Kathleen Fisch

Title(s)Assistant Adjunct Professor, Ob/Gyn & Reproductive sciences
SchoolVc-health Sciences-schools
Address9500 Gilman Drive #
La Jolla CA 92093
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    Collapse Biography 
    Collapse Education and Training
    University of California, BerkeleyB.A.Integrative Biology
    University of California, DavisPh.D.Ecology: Population Genetics

    Collapse Overview 
    Collapse Overview
    Kathleen Fisch, Ph.D. is an Assistant Professor in the Department of Obstetrics, Gynecology and Reproductive Sciences, in the Division of Maternal-Fetal Medicine. She serves as the Faculty Director of the Center for Computational Biology & Bioinformatics (CCBB) and as the Co-Director of the ACTRI Center for Excellence in Translational Immunogenomics (CETI). Dr. Fisch spearheads the development of a vibrant, leading edge vision for computational genomics, bioinformatics support and infrastructure at UCSD Health Sciences.

    Collapse Research 
    Collapse Research Activities and Funding
    Genomic Dissection of Placental Lesions in Preeclampsia
    NIH/NICHD R21HD110893Aug 1, 2023 - Jul 31, 2025
    Role: Principal Investigator
    Pregnant Female Reproductive Tissue Mapping Center
    NIH U54HD110347Aug 1, 2022 - Jul 31, 2026
    Role: Project Lead - Data Analysis Core
    Omics Data Generation Center (ODGC) for the Acute to Chronic Pain Signatures (A2CPS) Program
    NIH U54DA049115Sep 1, 2019 - Jul 31, 2023
    Role: Principal Investigator (MPI)
    UC San Diego Clinical and Translational Research Institute
    NIH 2UL1TR001442-06Aug 13, 2015 - Apr 30, 2025
    Role: Co-Investigator, Co-Director - Center for Excellence in Translational Immunogenomics (CETI)

    Collapse Bibliographic 
    Collapse Publications
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Response to Letter to the Editor: Comment on Article: Aspirin resistance in pregnancy is associated with reduced interleukin-2 concentration in maternal serum. Pregnancy Hypertens. 2024 Sep 20; 38:101161. Fisch KM. PMID: 39305542.
      View in: PubMed   Mentions:    Fields:    
    2. Inhibition of novel human-HPV hybrid ecDNA enhancers reduces oncogene expression and tumor growth in oropharyngeal cancer. Res Sq. 2024 Sep 05. Nakagawa T, Luebeck J, Zhu K, Lange JT, Sasik R, Phillips C, Sadat S, Javadzadeh S, Yang Q, Wang A, Pestonjamasp K, Rosenthal B, Fisch KM, Mischel P, Bafna V, Califano JA. PMID: 39281879; PMCID: PMC11398563.
      View in: PubMed   Mentions:
    3. RNA editing regulates host immune response and T cell homeostasis in SARS-CoV-2 infection. PLoS One. 2024; 19(8):e0307450. Huang M, Mark A, Pham J, Vera K, Saravia-Butler AM, Beheshti A, Jiang Q, Fisch KM. PMID: 39178184; PMCID: PMC11343423.
      View in: PubMed   Mentions:    Fields:    Translation:HumansCells
    4. Single-cell transcriptomics reveal differences between chorionic and basal plate cytotrophoblasts and trophoblast stem cells. bioRxiv. 2024 Jul 16. Morey R, Soncin F, Kallol S, Sah N, Manalo Z, Bui T, Slamecka J, Cheung VC, Pizzo D, Requena DF, Chang CW, Farah O, Kittle R, Meads M, Horii M, Fisch K, Parast MM. PMID: 39071344; PMCID: PMC11275976.
      View in: PubMed   Mentions:
    5. Comparative single-cell transcriptional and proteomic atlas of clinical-grade injectable mesenchymal source tissues. Sci Adv. 2024 Jul 12; 10(28):eadn2831. Ruoss S, Nasamran CA, Ball ST, Chen JL, Halter KN, Bruno KA, Whisenant TC, Parekh JN, Dorn SN, Esparza MC, Bremner SN, Fisch KM, Engler AJ, Ward SR. PMID: 38996032; PMCID: PMC11244553.
      View in: PubMed   Mentions:    Fields:    Translation:HumansCells
    6. PI3Kγ inhibition circumvents inflammation and vascular leak in SARS-CoV-2 and other infections. Sci Transl Med. 2024 Jul 03; 16(754):eadi6887. Shepard RM, Ghebremedhin A, Pratumchai I, Robinson SR, Betts C, Hu J, Sasik R, Fisch KM, Zak J, Chen H, Paradise M, Rivera J, Amjad M, Uchiyama S, Seo H, Campos AD, Dayao DA, Tzipori S, Piedra-Mora C, Das S, Hasteh F, Russo H, Sun X, Xu L, E Alexander LC, Duran JM, Odish M, Pretorius V, Kirchberger NC, Chin SM, Von Schalscha T, Cheresh D, Morrey JD, Alargova R, O'Connell B, Martinot TA, Patel SP, Nizet V, Martinot AJ, Coussens LM, Teijaro JR, Varner JA. PMID: 38959328; PMCID: PMC11272418.
      View in: PubMed   Mentions:    Fields:    Translation:HumansAnimalsCells
    7. The genomic landscape of Ménière's disease: a path to endolymphatic hydrops. BMC Genomics. 2024 Jun 28; 25(1):646. Fisch KM, Rosenthal SB, Mark A, Sasik R, Nasamran CA, Clifford R, Derebery MJ, Boussaty E, Jepsen K, Harris J, Friedman RA. PMID: 38943082; PMCID: PMC11212243.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansAnimals
    8. Aspirin resistance in pregnancy is associated with reduced interleukin-2 (IL-2) concentrations in maternal serum: Implications for aspirin prophylaxis for preeclampsia. Pregnancy Hypertens. 2024 Sep; 37:101131. Hernandez F, Chavez H, Goemans SL, Kirakosyan Y, Luevano CD, Canfield D, Laurent LC, Jacobs M, Woelkers D, Tarsa M, Gyamfi-Bannerman C, Fisch KM. PMID: 38851168.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    9. Comprehensive next-generation sequencing identifies novel putative pathogenic or likely pathogenic germline variants in patients with concurrent tubo-ovarian and endometrial serous and endometrioid carcinomas or precursors. Gynecol Oncol. 2024 08; 187:241-248. Aisagbonhi O, Ghlichloo I, Hong DS, Roma A, Fadare O, Eskander R, Saenz C, Fisch KM, Song W. PMID: 38833993.
      View in: PubMed   Mentions: 1     Fields:    Translation:Humans
    10. Cord Blood Adductomics Reveals Oxidative Stress Exposure Pathways of Bronchopulmonary Dysplasia. Antioxidants (Basel). 2024 Apr 20; 13(4). Lin ET, Bae Y, Birkett R, Sharma AM, Zhang R, Fisch KM, Funk W, Mestan KK. PMID: 38671941; PMCID: PMC11047351.
      View in: PubMed   Mentions: 1  
    11. Chronic villitis as a distinctive feature of placental injury in maternal SARS-CoV-2 infection. Am J Obstet Gynecol. 2024 Apr 03. Gabby LC, Jones CK, McIntyre BB, Manalo Z, Meads M, Pizzo DP, Diaz-Vigil J, Soncin F, Fisch KM, Ramos GA, Jacobs MB, Parast MM. PMID: 38580043.
      View in: PubMed   Mentions:    Fields:    
    12. Nuclear morphology is shaped by loop-extrusion programs. Nature. 2024 Mar; 627(8002):196-203. Patta I, Zand M, Lee L, Mishra S, Bortnick A, Lu H, Prusty A, McArdle S, Mikulski Z, Wang HY, Cheng CS, Fisch KM, Hu M, Murre C. PMID: 38355805; PMCID: PMC11052650.
      View in: PubMed   Mentions: 1     Fields:    Translation:Cells
    13. Malignant A-to-I RNA editing by ADAR1 drives T cell acute lymphoblastic leukemia relapse via attenuating dsRNA sensing. Cell Rep. 2024 Feb 27; 43(2):113704. Rivera M, Zhang H, Pham J, Isquith J, Zhou QJ, Balaian L, Sasik R, Enlund S, Mark A, Ma W, Holm F, Fisch KM, Kuo DJ, Jamieson C, Jiang Q. PMID: 38265938; PMCID: PMC10962356.
      View in: PubMed   Mentions:    Fields:    Translation:HumansCells
    14. Lipopolysaccharide-induced chronic inflammation increases female serum gonadotropins and shifts the pituitary transcriptomic landscape. Front Endocrinol (Lausanne). 2023; 14:1279878. Garcia C, Velez LM, Ujagar N, Del Mundo Z, Nguyen T, Fox C, Mark A, Fisch KM, Lawson MA, Duleba AJ, Seldin MM, Nicholas DA. PMID: 38260148; PMCID: PMC10801245.
      View in: PubMed   Mentions: 2     Fields:    Translation:AnimalsCells
    15. Genomic surveillance reveals dynamic shifts in the connectivity of COVID-19 epidemics. Cell. 2023 12 21; 186(26):5690-5704.e20. Matteson NL, Hassler GW, Kurzban E, Schwab MA, Perkins SA, Gangavarapu K, Levy JI, Parker E, Pride D, Hakim A, De Hoff P, Cheung W, Castro-Martinez A, Rivera A, Veder A, Rivera A, Wauer C, Holmes J, Wilson J, Ngo SN, Plascencia A, Lawrence ES, Smoot EW, Eisner ER, Tsai R, Chacón M, Baer NA, Seaver P, Salido RA, Aigner S, Ngo TT, Barber T, Ostrander T, Fielding-Miller R, Simmons EH, Zazueta OE, Serafin-Higuera I, Sanchez-Alavez M, Moreno-Camacho JL, García-Gil A, Murphy Schafer AR, McDonald E, Corrigan J, Malone JD, Stous S, Shah S, Moshiri N, Weiss A, Anderson C, Aceves CM, Spencer EG, Hufbauer EC, Lee JJ, King AJ, Ramesh KS, Nguyen KN, Saucedo K, Robles-Sikisaka R, Fisch KM, Gonias SL, Birmingham A, McDonald D, Karthikeyan S, Martin NK, Schooley RT, Negrete AJ, Reyna HJ, Chavez JR, Garcia ML, Cornejo-Bravo JM, Becker D, Isaksson M, Washington NL, Lee W, Garfein RS, Luna-Ruiz Esparza MA, Alcántar-Fernández J, Henson B, Jepsen K, Olivares-Flores B, Barrera-Badillo G, Lopez-Martínez I, Ramírez-González JE, Flores-León R, Kingsmore SF, Sanders A, Pradenas A, White B, Matthews G, Hale M, McLawhon RW, Reed SL, Winbush T, McHardy IH, Fielding RA, Nicholson L, Quigley MM, Harding A, Mendoza A, Bakhtar O, Browne SH, Olivas Flores J, Rincon Rodríguez DG, Gonzalez Ibarra M, Robles Ibarra LC, Arellano Vera BJ, Gonzalez Garcia J, Harvey-Vera A, Knight R, Laurent LC, Yeo GW, Wertheim JO, Ji X, Worobey M, Suchard MA, Andersen KG, Campos-Romero A, Wohl S, Zeller M. PMID: 38101407; PMCID: PMC10795731.
      View in: PubMed   Mentions: 2     Fields:    Translation:HumansCellsPHPublic Health
    16. Resident microbes shape the vaginal epithelial glycan landscape. Sci Transl Med. 2023 11 29; 15(724):eabp9599. Agarwal K, Choudhury B, Robinson LS, Morrill SR, Bouchibiti Y, Chilin-Fuentes D, Rosenthal SB, Fisch KM, Peipert JF, Lebrilla CB, Allsworth JE, Lewis AL, Lewis WG. PMID: 38019934; PMCID: PMC11419735.
      View in: PubMed   Mentions: 6     Fields:    Translation:HumansCells
    17. Defining the relationship of salivary gland malignancies to novel cell subpopulations in human salivary glands using single nucleus RNA-sequencing. Int J Cancer. 2024 Apr 15; 154(8):1492-1503. Nakagawa T, Santos J, Nasamran CA, Sen P, Sadat S, Monther A, Bendik J, Ebisumoto K, Hu J, Preissl S, Guo T, Vavinskaya V, Fisch KM, Califano JA. PMID: 37971144.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    18. High placental expression of FLT1, LEP, PHYHIP and IL3RA - In persons of African ancestry with severe preeclampsia. Placenta. 2023 12; 144:13-22. Aisagbonhi O, Bui T, Nasamran CA, St Louis H, Pizzo D, Meads M, Mulholland M, Magallanes C, Lamale-Smith L, Laurent LC, Morey R, Jacobs MB, Fisch KM, Horii M. PMID: 37949031; PMCID: PMC10843761.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    19. A Network Landscape of HPVOPC Reveals Methylation Alterations as Significant Drivers of Gene Expression via an Immune-Mediated GPCR Signal. Cancers (Basel). 2023 Sep 01; 15(17). Qualliotine JR, Nakagawa T, Rosenthal SB, Sadat S, Ballesteros-Merino C, Xu G, Mark A, Nasamran A, Gutkind JS, Fisch KM, Guo T, Fox BA, Khan Z, Molinolo AA, Califano JA. PMID: 37686653; PMCID: PMC10486378.
      View in: PubMed   Mentions:
    20. Predicting chronic postsurgical pain: current evidence and a novel program to develop predictive biomarker signatures. Pain. 2023 09 01; 164(9):1912-1926. Sluka KA, Wager TD, Sutherland SP, Labosky PA, Balach T, Bayman EO, Berardi G, Brummett CM, Burns J, Buvanendran A, Caffo B, Calhoun VD, Clauw D, Chang A, Coffey CS, Dailey DL, Ecklund D, Fiehn O, Fisch KM, Frey Law LA, Harris RE, Harte SE, Howard TD, Jacobs J, Jacobs JM, Jepsen K, Johnston N, Langefeld CD, Laurent LC, Lenzi R, Lindquist MA, Lokshin A, Kahn A, McCarthy RJ, Olivier M, Porter L, Qian WJ, Sankar CA, Satterlee J, Swensen AC, Vance CGT, Waljee J, Wandner LD, Williams DA, Wixson RL, Zhou XJ, A2CPS Consortium. PMID: 37326643; PMCID: PMC10436361.
      View in: PubMed   Mentions: 12     Fields:    Translation:Humans
    21. Variant STAT4 and Response to Ruxolitinib in an Autoinflammatory Syndrome. N Engl J Med. 2023 Jun 15; 388(24):2241-2252. Baghdassarian H, Blackstone SA, Clay OS, Philips R, Matthiasardottir B, Nehrebecky M, Hua VK, McVicar R, Liu Y, Tucker SM, Randazzo D, Deuitch N, Rosenzweig S, Mark A, Sasik R, Fisch KM, Pimpale Chavan P, Eren E, Watts NR, Ma CA, Gadina M, Schwartz DM, Sanyal A, Werner G, Murdock DR, Horita N, Chowdhury S, Dimmock D, Jepsen K, Remmers EF, Goldbach-Mansky R, Gahl WA, O'Shea JJ, Milner JD, Lewis NE, Chang J, Kastner DL, Torok K, Oda H, Putnam CD, Broderick L. PMID: 37256972; PMCID: PMC10392571.
      View in: PubMed   Mentions: 13     Fields:    
    22. Transcriptional time course after rotator cuff repair in 6 month old female rabbits. Front Physiol. 2023; 14:1164055. Vasquez-Bolanos LS, Gibbons MC, Ruoss S, Wu IT, Esparza MC, Fithian DC, Lane JG, Singh A, Nasamran CA, Fisch KM, Ward SR. PMID: 37228812; PMCID: PMC10203179.
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    23. Maladaptive lymphangiogenesis is associated with synovial iron accumulation and delayed clearance in factor VIII-deficient mice after induced hemarthrosis. J Thromb Haemost. 2023 09; 21(9):2390-2404. Cooke EJ, Joseph BC, Nasamran CA, Fisch KM, von Drygalski A. PMID: 37116753; PMCID: PMC10792547.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansAnimals
    24. Focal adhesion is associated with lithium response in bipolar disorder: evidence from a network-based multi-omics analysis. Mol Psychiatry. 2024 01; 29(1):6-19. Niemsiri V, Rosenthal SB, Nievergelt CM, Maihofer AX, Marchetto MC, Santos R, Shekhtman T, Alliey-Rodriguez N, Anand A, Balaraman Y, Berrettini WH, Bertram H, Burdick KE, Calabrese JR, Calkin CV, Conroy C, Coryell WH, DeModena A, Eyler LT, Feeder S, Fisher C, Frazier N, Frye MA, Gao K, Garnham J, Gershon ES, Goes FS, Goto T, Harrington GJ, Jakobsen P, Kamali M, Kelly M, Leckband SG, Lohoff FW, McCarthy MJ, McInnis MG, Craig D, Millett CE, Mondimore F, Morken G, Nurnberger JI, Donovan CO, Øedegaard KJ, Ryan K, Schinagle M, Shilling PD, Slaney C, Stapp EK, Stautland A, Tarwater B, Zandi PP, Alda M, Fisch KM, Gage FH, Kelsoe JR. PMID: 36991131; PMCID: PMC11078741.
      View in: PubMed   Mentions: 9     Fields:    Translation:HumansCells
    25. Detection and targeting of splicing deregulation in pediatric acute myeloid leukemia stem cells. Cell Rep Med. 2023 03 21; 4(3):100962. van der Werf I, Mondala PK, Steel SK, Balaian L, Ladel L, Mason CN, Diep RH, Pham J, Cloos J, Kaspers GJL, Chan WC, Mark A, La Clair JJ, Wentworth P, Fisch KM, Crews LA, Whisenant TC, Burkart MD, Donohoe ME, Jamieson CHM. PMID: 36889320; PMCID: PMC10040387.
      View in: PubMed   Mentions: 7     Fields:    Translation:HumansCells
    26. Sp3 is essential for normal lung morphogenesis and cell cycle progression during mouse embryonic development. Development. 2023 03 01; 150(5). McCoy AM, Lakhdari O, Shome S, Caoili K, Hernandez GE, Aghaeepour N, Butcher LD, Fisch K, Prince LS. PMID: 36762637; PMCID: PMC10110423.
      View in: PubMed   Mentions: 2     Fields:    Translation:AnimalsCells
    27. Safer at school early alert: an observational study of wastewater and surface monitoring to detect COVID-19 in elementary schools. Lancet Reg Health Am. 2023 Mar; 19:100449. Fielding-Miller R, Karthikeyan S, Gaines T, Garfein RS, Salido RA, Cantu VJ, Kohn L, Martin NK, Wynn A, Wijaya C, Flores M, Omaleki V, Majnoonian A, Gonzalez-Zuniga P, Nguyen M, Vo AV, Le T, Duong D, Hassani A, Tweeten S, Jepsen K, Henson B, Hakim A, Birmingham A, De Hoff P, Mark AM, Nasamran CA, Rosenthal SB, Moshiri N, Fisch KM, Humphrey G, Farmer S, Tubb HM, Valles T, Morris J, Kang J, Khaleghi B, Young C, Akel AD, Eilert S, Eno J, Curewitz K, Laurent LC, Rosing T, Knight R, SEARCH. PMID: 36844610; PMCID: PMC9939935.
      View in: PubMed   Mentions: 18  
    28. Mapping the common gene networks that underlie related diseases. Nat Protoc. 2023 Jun; 18(6):1745-1759. Rosenthal SB, Wright SN, Liu S, Churas C, Chilin-Fuentes D, Chen CH, Fisch KM, Pratt D, Kreisberg JF, Ideker T. PMID: 36653526; PMCID: PMC10257754.
      View in: PubMed   Mentions: 3     Fields:    Translation:Humans
    29. Modeling placental development and disease using human pluripotent stem cells. Placenta. 2023 09 26; 141:18-25. Morey R, Bui T, Fisch KM, Horii M. PMID: 36333266; PMCID: PMC10148925.
      View in: PubMed   Mentions: 3     Fields:    Translation:HumansAnimalsCells
    30. Chromatin Accessibility and Transcriptional Differences in Human Stem Cell-Derived Early-Stage Retinal Organoids. Cells. 2022 10 28; 11(21). Jones MK, Agarwal D, Mazo KW, Chopra M, Jurlina SL, Dash N, Xu Q, Ogata AR, Chow M, Hill AD, Kambli NK, Xu G, Sasik R, Birmingham A, Fisch KM, Weinreb RN, Enke RA, Skowronska-Krawczyk D, Wahlin KJ. PMID: 36359808; PMCID: PMC9657268.
      View in: PubMed   Mentions: 3     Fields:    Translation:HumansCells
    31. Interleukin-18 signaling promotes activation of hepatic stellate cells in mouse liver fibrosis. Hepatology. 2023 06 01; 77(6):1968-1982. Knorr J, Kaufmann B, Inzaugarat ME, Holtmann TM, Geisler L, Hundertmark J, Kohlhepp MS, Boosheri LM, Chilin-Fuentes DR, Birmingham A, Fisch KM, Schilling JD, Loosen SH, Trautwein C, Roderburg C, Demir M, Tacke F, Hoffman HM, Feldstein AE, Wree A. PMID: 36059147; PMCID: PMC9984672.
      View in: PubMed   Mentions: 15     Fields:    Translation:AnimalsCells
    32. Spatial transcriptomics tools allow for regional exploration of heterogeneous muscle pathology in the pre-clinical rabbit model of rotator cuff tear. J Orthop Surg Res. 2022 Oct 04; 17(1):440. Ruoss S, Esparza MC, Vasquez-Bolanos LS, Nasamran CA, Fisch KM, Engler AJ, Ward SR. PMID: 36195913; PMCID: PMC9531386.
      View in: PubMed   Mentions: 1     Fields:    Translation:AnimalsCells
    33. A Novel Hypomorphic Apex1 Mouse Model Implicates Apurinic/Apyrimidinic Endonuclease 1 in Oxidative DNA Damage Repair in Gastric Epithelial Cells. Antioxid Redox Signal. 2023 01; 38(1-3):183-197. Rios-Covian D, Butcher LD, Ablack AL, den Hartog G, Matsubara MT, Ly H, Oates AW, Xu G, Fisch KM, Ahrens ET, Toden S, Brown CC, Kim K, Le D, Eckmann L, Dhar B, Izumi T, Ernst PB, Crowe SE. PMID: 35754343; PMCID: PMC10039277.
      View in: PubMed   Mentions: 1     Fields:    Translation:AnimalsCells
    34. Wastewater sequencing reveals early cryptic SARS-CoV-2 variant transmission. Nature. 2022 09; 609(7925):101-108. Karthikeyan S, Levy JI, De Hoff P, Humphrey G, Birmingham A, Jepsen K, Farmer S, Tubb HM, Valles T, Tribelhorn CE, Tsai R, Aigner S, Sathe S, Moshiri N, Henson B, Mark AM, Hakim A, Baer NA, Barber T, Belda-Ferre P, Chacón M, Cheung W, Cresini ES, Eisner ER, Lastrella AL, Lawrence ES, Marotz CA, Ngo TT, Ostrander T, Plascencia A, Salido RA, Seaver P, Smoot EW, McDonald D, Neuhard RM, Scioscia AL, Satterlund AM, Simmons EH, Abelman DB, Brenner D, Bruner JC, Buckley A, Ellison M, Gattas J, Gonias SL, Hale M, Hawkins F, Ikeda L, Jhaveri H, Johnson T, Kellen V, Kremer B, Matthews G, McLawhon RW, Ouillet P, Park D, Pradenas A, Reed S, Riggs L, Sanders A, Sollenberger B, Song A, White B, Winbush T, Aceves CM, Anderson C, Gangavarapu K, Hufbauer E, Kurzban E, Lee J, Matteson NL, Parker E, Perkins SA, Ramesh KS, Robles-Sikisaka R, Schwab MA, Spencer E, Wohl S, Nicholson L, McHardy IH, Dimmock DP, Hobbs CA, Bakhtar O, Harding A, Mendoza A, Bolze A, Becker D, Cirulli ET, Isaksson M, Schiabor Barrett KM, Washington NL, Malone JD, Schafer AM, Gurfield N, Stous S, Fielding-Miller R, Garfein RS, Gaines T, Anderson C, Martin NK, Schooley R, Austin B, MacCannell DR, Kingsmore SF, Lee W, Shah S, McDonald E, Yu AT, Zeller M, Fisch KM, Longhurst C, Maysent P, Pride D, Khosla PK, Laurent LC, Yeo GW, Andersen KG, Knight R. PMID: 35798029; PMCID: PMC9433318.
      View in: PubMed   Mentions: 147     Fields:    Translation:HumansCellsPHPublic Health
    35. Nonalcoholic fatty liver disease risk and histologic severity are associated with genetic polymorphisms in children. Hepatology. 2023 01 01; 77(1):197-212. Goyal NP, Rosenthal SB, Nasamran C, Behling CA, Angeles JE, Fishbein MH, Harlow KE, Jain AK, Molleston JP, Newton KP, Ugalde-Nicalo P, Xanthankos SA, Yates K, Schork NJ, Fisch KM, Schwimmer JB, NASH Clinical Research Network. PMID: 35560106; PMCID: PMC9653518.
      View in: PubMed   Mentions: 3     Fields:    Translation:Humans
    36. Derivation of functional trophoblast stem cells from primed human pluripotent stem cells. Stem Cell Reports. 2022 06 14; 17(6):1303-1317. Soncin F, Morey R, Bui T, Requena DF, Cheung VC, Kallol S, Kittle R, Jackson MG, Farah O, Chousal J, Meads M, Pizzo D, Horii M, Fisch KM, Parast MM. PMID: 35594858; PMCID: PMC9214048.
      View in: PubMed   Mentions: 19     Fields:    Translation:HumansCells
    37. Multi-Site Observational Study to Assess Biomarkers for Susceptibility or Resilience to Chronic Pain: The Acute to Chronic Pain Signatures (A2CPS) Study Protocol. Front Med (Lausanne). 2022; 9:849214. Berardi G, Frey-Law L, Sluka KA, Bayman EO, Coffey CS, Ecklund D, Vance CGT, Dailey DL, Burns J, Buvanendran A, McCarthy RJ, Jacobs J, Zhou XJ, Wixson R, Balach T, Brummett CM, Clauw D, Colquhoun D, Harte SE, Harris RE, Williams DA, Chang AC, Waljee J, Fisch KM, Jepsen K, Laurent LC, Olivier M, Langefeld CD, Howard TD, Fiehn O, Jacobs JM, Dakup P, Qian WJ, Swensen AC, Lokshin A, Lindquist M, Caffo BS, Crainiceanu C, Zeger S, Kahn A, Wager T, Taub M, Ford J, Sutherland SP, Wandner LD. PMID: 35547202; PMCID: PMC9082267.
      View in: PubMed   Mentions: 1  
    38. The Host-Microbiome Response to Hyperbaric Oxygen Therapy in Ulcerative Colitis Patients. Cell Mol Gastroenterol Hepatol. 2022; 14(1):35-53. Gonzalez CG, Mills RH, Kordahi MC, Carrillo-Terrazas M, Secaira-Morocho H, Widjaja CE, Tsai MS, Mittal Y, Yee BA, Vargas F, Weldon K, Gauglitz JM, Delaroque C, Sauceda C, Rossitto LA, Ackermann G, Humphrey G, Swafford AD, Siegel CA, Buckey JC, Raffals LE, Sadler C, Lindholm P, Fisch KM, Valaseck M, Suriawinata A, Yeo GW, Ghosh P, Chang JT, Chu H, Dorrestein P, Zhu Q, Chassaing B, Knight R, Gonzalez DJ, Dulai PS. PMID: 35378331; PMCID: PMC9117812.
      View in: PubMed   Mentions: 9     Fields:    Translation:HumansAnimals
    39. The Lung Microenvironment Instructs Gene Transcription in Neonatal and Adult Alveolar Macrophages. J Immunol. 2022 04 15; 208(8):1947-1959. Honda A, Hoeksema MA, Sakai M, Lund SJ, Lakhdari O, Butcher LD, Rambaldo TC, Sekiya NM, Nasamran CA, Fisch KM, Sajti E, Glass CK, Prince LS. PMID: 35354612; PMCID: PMC9012679.
      View in: PubMed   Mentions: 4     Fields:    Translation:AnimalsCells
    40. The ViReflow pipeline enables user friendly large scale viral consensus genome reconstruction. Sci Rep. 2022 03 24; 12(1):5077. Moshiri N, Fisch KM, Birmingham A, DeHoff P, Yeo GW, Jepsen K, Laurent LC, Knight R. PMID: 35332213; PMCID: PMC8943356.
      View in: PubMed   Mentions: 5     Fields:    Translation:HumansCellsPHPublic Health
    41. Machine learning approach to predicting persistent opioid use following lower extremity joint arthroplasty. Reg Anesth Pain Med. 2022 05; 47(5):313-319. Gabriel RA, Harjai B, Prasad RS, Simpson S, Chu I, Fisch KM, Said ET. PMID: 35115414; PMCID: PMC8961772.
      View in: PubMed   Mentions: 9     Fields:    Translation:Humans
    42. Mutant Huntingtin Protein Interaction Map Implicates Dysregulation of Multiple Cellular Pathways in Neurodegeneration of Huntington's Disease. J Huntingtons Dis. 2022; 11(3):243-267. Podvin S, Rosenthal SB, Poon W, Wei E, Fisch KM, Hook V. PMID: 35871359; PMCID: PMC9484122.
      View in: PubMed   Mentions: 7     Fields:    Translation:HumansAnimals
    43. Extrachromosomal DNA in HPV-Mediated Oropharyngeal Cancer Drives Diverse Oncogene Transcription. Clin Cancer Res. 2021 12 15; 27(24):6772-6786. Pang J, Nguyen N, Luebeck J, Ball L, Finegersh A, Ren S, Nakagawa T, Flagg M, Sadat S, Mischel PS, Xu G, Fisch K, Guo T, Cahill G, Panuganti B, Bafna V, Califano J. PMID: 34548317; PMCID: PMC8710294.
      View in: PubMed   Mentions: 19     Fields:    Translation:HumansCells
    44. Resurgence of SARS-CoV-2 Infection in a Highly Vaccinated Health System Workforce. N Engl J Med. 2021 09 30; 385(14):1330-1332. Keehner J, Horton LE, Binkin NJ, Laurent LC, SEARCH Alliance, Pride D, Longhurst CA, Abeles SR, Torriani FJ. PMID: 34469645; PMCID: PMC8451183.
      View in: PubMed   Mentions: 94     Fields:    Translation:HumansCellsPHPublic Health
    45. A convergent molecular network underlying autism and congenital heart disease. Cell Syst. 2021 11 17; 12(11):1094-1107.e6. Rosenthal SB, Willsey HR, Xu Y, Mei Y, Dea J, Wang S, Curtis C, Sempou E, Khokha MK, Chi NC, Willsey AJ, Fisch KM, Ideker T. PMID: 34411509; PMCID: PMC8602730.
      View in: PubMed   Mentions: 13     Fields:    Translation:Humans
    46. Transcriptional Time Course After Rotator Cuff Tear. Front Physiol. 2021; 12:707116. Vasquez-Bolanos LS, Gibbons MC, Ruoss S, Wu IT, Vargas-Vila M, Hyman SA, Esparza MC, Fithian DC, Lane JG, Singh A, Nasamran CA, Fisch KM, Ward SR. PMID: 34421646; PMCID: PMC8378535.
      View in: PubMed   Mentions: 3  
    47. Transient genomic instability drives tumorigenesis through accelerated clonal evolution. Genes Dev. 2021 08 01; 35(15-16):1093-1108. Shoshani O, Bakker B, de Haan L, Tijhuis AE, Wang Y, Kim DH, Maldonado M, Demarest MA, Artates J, Zhengyu O, Mark A, Wardenaar R, Sasik R, Spierings DCJ, Vitre B, Fisch K, Foijer F, Cleveland DW. PMID: 34266887; PMCID: PMC8336898.
      View in: PubMed   Mentions: 36     Fields:    Translation:AnimalsCells
    48. Extremes of age are associated with differences in the expression of selected pattern recognition receptor genes and ACE2, the receptor for SARS-CoV-2: implications for the epidemiology of COVID-19 disease. BMC Med Genomics. 2021 05 24; 14(1):138. Bickler SW, Cauvi DM, Fisch KM, Prieto JM, Sykes AG, Thangarajah H, Lazar DA, Ignacio RC, Gerstmann DR, Ryan AF, Bickler PE, De Maio A. PMID: 34030677; PMCID: PMC8142073.
      View in: PubMed   Mentions: 10     Fields:    Translation:HumansCells
    49. NASA GeneLab RNA-seq consensus pipeline: standardized processing of short-read RNA-seq data. iScience. 2021 Apr 23; 24(4):102361. Overbey EG, Saravia-Butler AM, Zhang Z, Rathi KS, Fogle H, da Silveira WA, Barker RJ, Bass JJ, Beheshti A, Berrios DC, Blaber EA, Cekanaviciute E, Costa HA, Davin LB, Fisch KM, Gebre SG, Geniza M, Gilbert R, Gilroy S, Hardiman G, Herranz R, Kidane YH, Kruse CPS, Lee MD, Liefeld T, Lewis NG, McDonald JT, Meller R, Mishra T, Perera IY, Ray S, Reinsch SS, Rosenthal SB, Strong M, Szewczyk NJ, Tahimic CGT, Taylor DM, Vandenbrink JP, Villacampa A, Weging S, Wolverton C, Wyatt SE, Zea L, Costes SV, Galazka JM. PMID: 33870146; PMCID: PMC8044432.
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    50. Strategies to Identify Mesenchymal Stromal Cells in Minimally Manipulated Human Bone Marrow Aspirate Concentrate Lack Consensus. Am J Sports Med. 2021 04; 49(5):1313-1322. Ruoss S, Walker JT, Nasamran CA, Fisch KM, Paez CJ, Parekh JN, Ball ST, Chen JL, Ahmed SS, Ward SR. PMID: 33646886; PMCID: PMC8409176.
      View in: PubMed   Mentions: 6     Fields:    Translation:HumansCells
    51. Activation of NF-κB and p300/CBP potentiates cancer chemoimmunotherapy through induction of MHC-I antigen presentation. Proc Natl Acad Sci U S A. 2021 02 23; 118(8). Zhou Y, Bastian IN, Long MD, Dow M, Li W, Liu T, Ngu RK, Antonucci L, Huang JY, Phung QT, Zhao XH, Banerjee S, Lin XJ, Wang H, Dang B, Choi S, Karin D, Su H, Ellisman MH, Jamieson C, Bosenberg M, Cheng Z, Haybaeck J, Kenner L, Fisch KM, Bourgon R, Hernandez G, Lill JR, Liu S, Carter H, Mellman I, Karin M, Shalapour S. PMID: 33602823; PMCID: PMC7923353.
      View in: PubMed   Mentions: 43     Fields:    Translation:HumansAnimalsCells
    52. Differential blood DNA methylation across Lewy body dementias. Alzheimers Dement (Amst). 2021; 13(1):e12156. Nasamran CA, Sachan ANS, Mott J, Kuras YI, Scherzer CR, Study HB, Ricciardelli E, Jepsen K, Edland SD, Fisch KM, Desplats P. PMID: 33665346; PMCID: PMC7896631.
      View in: PubMed   Mentions: 8  
    53. Inflammation-driven deaminase deregulation fuels human pre-leukemia stem cell evolution. Cell Rep. 2021 01 26; 34(4):108670. Jiang Q, Isquith J, Ladel L, Mark A, Holm F, Mason C, He Y, Mondala P, Oliver I, Pham J, Ma W, Reynoso E, Ali S, Morris IJ, Diep R, Nasamran C, Xu G, Sasik R, Rosenthal SB, Birmingham A, Coso S, Pineda G, Crews L, Donohoe ME, Venter JC, Whisenant T, Mesa RA, Alexandrov LB, Fisch KM, Jamieson C. PMID: 33503434; PMCID: PMC8477897.
      View in: PubMed   Mentions: 12     Fields:    Translation:HumansCells
    54. Comprehensive Multi-omics Analysis Reveals Mitochondrial Stress as a Central Biological Hub for Spaceflight Impact. Cell. 2020 11 25; 183(5):1185-1201.e20. da Silveira WA, Fazelinia H, Rosenthal SB, Laiakis EC, Kim MS, Meydan C, Kidane Y, Rathi KS, Smith SM, Stear B, Ying Y, Zhang Y, Foox J, Zanello S, Crucian B, Wang D, Nugent A, Costa HA, Zwart SR, Schrepfer S, Elworth RAL, Sapoval N, Treangen T, MacKay M, Gokhale NS, Horner SM, Singh LN, Wallace DC, Willey JS, Schisler JC, Meller R, McDonald JT, Fisch KM, Hardiman G, Taylor D, Mason CE, Costes SV, Beheshti A. PMID: 33242417; PMCID: PMC7870178.
      View in: PubMed   Mentions: 137     Fields:    Translation:HumansAnimalsCells
    55. A New Era for Space Life Science: International Standards for Space Omics Processing. Patterns (N Y). 2020 Dec 11; 1(9):100148. Rutter L, Barker R, Bezdan D, Cope H, Costes SV, Degoricija L, Fisch KM, Gabitto MI, Gebre S, Giacomello S, Gilroy S, Green SJ, Mason CE, Reinsch SS, Szewczyk NJ, Taylor DM, Galazka JM, Herranz R, Muratani M. PMID: 33336201; PMCID: PMC7733874.
      View in: PubMed   Mentions: 23  
    56. Metabolomic profiles associated with a mouse model of antipsychotic-induced food intake and weight gain. Sci Rep. 2020 10 29; 10(1):18581. Zapata RC, Rosenthal SB, Fisch K, Dao K, Jain M, Osborn O. PMID: 33122657; PMCID: PMC7596057.
      View in: PubMed   Mentions: 5     Fields:    Translation:Animals
    57. HPV E2, E4, E5 drive alternative carcinogenic pathways in HPV positive cancers. Oncogene. 2020 10; 39(40):6327-6339. Ren S, Gaykalova DA, Guo T, Favorov AV, Fertig EJ, Tamayo P, Callejas-Valera JL, Allevato M, Gilardi M, Santos J, Fukusumi T, Sakai A, Ando M, Sadat S, Liu C, Xu G, Fisch KM, Wang Z, Molinolo AA, Gutkind JS, Ideker T, Koch WM, Califano JA. PMID: 32848210; PMCID: PMC7529583.
      View in: PubMed   Mentions: 45     Fields:    Translation:HumansAnimalsCells
    58. Aberrant expression of CPSF1 promotes head and neck squamous cell carcinoma via regulating alternative splicing. PLoS One. 2020; 15(5):e0233380. Sakai A, Ando M, Fukusumi T, Ren S, Liu C, Qualliotine J, Haft S, Sadat S, Saito Y, Guo TW, Xu G, Sasik R, Fisch KM, Gutkind JS, Fertig EJ, Molinolo AA, Califano JA. PMID: 32437477; PMCID: PMC7241804.
      View in: PubMed   Mentions: 9     Fields:    Translation:HumansCells
    59. Differential expression of nuclear genes encoding mitochondrial proteins from urban and rural populations in Morocco. Cell Stress Chaperones. 2020 11; 25(6):847-856. Bickler SW, Prieto JM, Cauvi DM, De Cos V, Nasamran C, Ameh E, Amin S, Nicholson S, Din H, Mocumbi AO, Noormahomed EV, Tellez-Isaias G, Fisch KM, De Maio A. PMID: 32319023; PMCID: PMC7591688.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansCells
    60. Single-Cell Transcriptomes Reveal a Complex Cellular Landscape in the Middle Ear and Differential Capacities for Acute Response to Infection. Front Genet. 2020; 11:358. Ryan AF, Nasamran CA, Pak K, Draf C, Fisch KM, Webster N, Kurabi A. PMID: 32351546; PMCID: PMC7174727.
      View in: PubMed   Mentions: 16  
    61. Increased Fibrogenic Gene Expression in Multifidus Muscles of Patients With Chronic Versus Acute Lumbar Spine Pathology. Spine (Phila Pa 1976). 2020 Feb 15; 45(4):E189-E195. Shahidi B, Fisch KM, Gibbons MC, Ward SR. PMID: 31513095; PMCID: PMC6994378.
      View in: PubMed   Mentions: 17     Fields:    Translation:Humans
    62. Rational genomic optimization of DNA detection for human papillomavirus type 16 in head and neck squamous cell carcinoma. Head Neck. 2020 04; 42(4):688-697. Saito Y, Favorov AV, Forman M, Ren S, Sakai A, Fukusumi T, Liu C, Sadat S, Ando M, Xu G, Khan Z, Pang J, Valsamakis A, Fisch KM, Califano JA. PMID: 31850594; PMCID: PMC7699136.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansCells
    63. FAK activity sustains intrinsic and acquired ovarian cancer resistance to platinum chemotherapy. Elife. 2019 09 03; 8. Diaz Osterman CJ, Ozmadenci D, Kleinschmidt EG, Taylor KN, Barrie AM, Jiang S, Bean LM, Sulzmaier FJ, Jean C, Tancioni I, Anderson K, Uryu S, Cordasco EA, Li J, Chen XL, Fu G, Ojalill M, Rappu P, Heino J, Mark AM, Xu G, Fisch KM, Kolev VN, Weaver DT, Pachter JA, Gyorffy B, McHale MT, Connolly DC, Molinolo A, Stupack DG, Schlaepfer DD. PMID: 31478830; PMCID: PMC6721800.
      View in: PubMed   Mentions: 64     Fields:    Translation:HumansAnimalsCells
    64. Mechanisms of vascular permeability and remodeling associated with hemarthrosis in factor VIII-deficient mice. J Thromb Haemost. 2019 11; 17(11):1815-1826. Cooke EJ, Wyseure T, Zhou JY, Gopal S, Nasamran CA, Fisch KM, Manon-Jensen T, Karsdal MA, Mosnier LO, von Drygalski A. PMID: 31301687; PMCID: PMC6824926.
      View in: PubMed   Mentions: 7     Fields:    Translation:Animals
    65. Integrating Gene and Protein Expression Reveals Perturbed Functional Networks in Alzheimer's Disease. Cell Rep. 2019 07 23; 28(4):1103-1116.e4. Canchi S, Raao B, Masliah D, Rosenthal SB, Sasik R, Fisch KM, De Jager PL, Bennett DA, Rissman RA. PMID: 31340147; PMCID: PMC7503200.
      View in: PubMed   Mentions: 43     Fields:    Translation:HumansCells
    66. Chromatin dysregulation and DNA methylation at transcription start sites associated with transcriptional repression in cancers. Nat Commun. 2019 05 16; 10(1):2188. Ando M, Saito Y, Xu G, Bui NQ, Medetgul-Ernar K, Pu M, Fisch K, Ren S, Sakai A, Fukusumi T, Liu C, Haft S, Pang J, Mark A, Gaykalova DA, Guo T, Favorov AV, Yegnasubramanian S, Fertig EJ, Ha P, Tamayo P, Yamasoba T, Ideker T, Messer K, Califano JA. PMID: 31097695; PMCID: PMC6522544.
      View in: PubMed   Mentions: 50     Fields:    Translation:HumansCells
    67. A Multiscale Map of the Stem Cell State in Pancreatic Adenocarcinoma. Cell. 2019 04 18; 177(3):572-586.e22. Lytle NK, Ferguson LP, Rajbhandari N, Gilroy K, Fox RG, Deshpande A, Schürch CM, Hamilton M, Robertson N, Lin W, Noel P, Wartenberg M, Zlobec I, Eichmann M, Galván JA, Karamitopoulou E, Gilderman T, Esparza LA, Shima Y, Spahn P, French R, Lewis NE, Fisch KM, Sasik R, Rosenthal SB, Kritzik M, Von Hoff D, Han H, Ideker T, Deshpande AJ, Lowy AM, Adams PD, Reya T. PMID: 30955884; PMCID: PMC6711371.
      View in: PubMed   Mentions: 68     Fields:    Translation:HumansAnimalsCells
    68. Mutation of chromatin regulators and focal hotspot alterations characterize human papillomavirus-positive oropharyngeal squamous cell carcinoma. Cancer. 2019 07 15; 125(14):2423-2434. Haft S, Ren S, Xu G, Mark A, Fisch K, Guo TW, Khan Z, Pang J, Ando M, Liu C, Sakai A, Fukusumi T, Califano JA. PMID: 30933315; PMCID: PMC6602825.
      View in: PubMed   Mentions: 19     Fields:    Translation:HumansCells
    69. DNA methylation changes associated with Parkinson's disease progression: outcomes from the first longitudinal genome-wide methylation analysis in blood. Epigenetics. 2019 04; 14(4):365-382. Henderson-Smith A, Fisch KM, Hua J, Liu G, Ricciardelli E, Jepsen K, Huentelman M, Stalberg G, Edland SD, Scherzer CR, Dunckley T, Desplats P. PMID: 30871403; PMCID: PMC6557551.
      View in: PubMed   Mentions: 39     Fields:    Translation:HumansCells
    70. On entropy and information in gene interaction networks. Bioinformatics. 2019 03 01; 35(5):815-822. Wallace ZS, Rosenthal SB, Fisch KM, Ideker T, Sasik R. PMID: 30102349; PMCID: PMC7245360.
      View in: PubMed   Mentions: 9     Fields:    Translation:Humans
    71. Variations in HPV function are associated with survival in squamous cell carcinoma. JCI Insight. 2019 Jan 10; 4(1). Gleber-Netto FO, Rao X, Guo T, Xi Y, Gao M, Shen L, Erikson K, Kalu NN, Ren S, Xu G, Fisch KM, Akagi K, Seiwert T, Gillison M, Frederick MJ, Johnson FM, Wang J, Myers JN, Califano J, Skinner HD, Pickering CR. PMID: 30626753; PMCID: PMC6485353.
      View in: PubMed   Mentions: 42     Fields:    
    72. Biological Interpretation of Complex Genomic Data. Methods Mol Biol. 2019; 1908:61-71. Fisch KM. PMID: 30649721; PMCID: PMC7269365.
      View in: PubMed   Mentions: 1     Fields:    Translation:Humans
    73. A Conservation Hatchery Population of Delta Smelt Shows Evidence of Genetic Adaptation to Captivity After 9 Generations. J Hered. 2018 08 24; 109(6):689-699. Finger AJ, Mahardja B, Fisch KM, Benjamin A, Lindberg J, Ellison L, Ghebremariam T, Hung TC, May B. PMID: 30016452.
      View in: PubMed   Mentions: 7     Fields:    Translation:Animals
    74. Efficient population-scale variant analysis and prioritization with VAPr. Bioinformatics. 2018 08 15; 34(16):2843-2845. Birmingham A, Mark AM, Mazzaferro C, Xu G, Fisch KM. PMID: 29659724; PMCID: PMC6084604.
      View in: PubMed   Mentions: 1     Fields:    
    75. Identification of transcription factors responsible for dysregulated networks in human osteoarthritis cartilage by global gene expression analysis. Osteoarthritis Cartilage. 2018 11; 26(11):1531-1538. Fisch KM, Gamini R, Alvarez-Garcia O, Akagi R, Saito M, Muramatsu Y, Sasho T, Koziol JA, Su AI, Lotz MK. PMID: 30081074; PMCID: PMC6245598.
      View in: PubMed   Mentions: 111     Fields:    Translation:Humans
    76. Characterization of Alternative Splicing Events in HPV-Negative Head and Neck Squamous Cell Carcinoma Identifies an Oncogenic DOCK5 Variant. Clin Cancer Res. 2018 10 15; 24(20):5123-5132. Liu C, Guo T, Xu G, Sakai A, Ren S, Fukusumi T, Ando M, Sadat S, Saito Y, Khan Z, Fisch KM, Califano J. PMID: 29945995; PMCID: PMC6440699.
      View in: PubMed   Mentions: 21     Fields:    Translation:HumansCells
    77. Map of synthetic rescue interactions for the Fanconi anemia DNA repair pathway identifies USP48. Nat Commun. 2018 06 11; 9(1):2280. Velimezi G, Robinson-Garcia L, Muñoz-Martínez F, Wiegant WW, Ferreira da Silva J, Owusu M, Moder M, Wiedner M, Rosenthal SB, Fisch KM, Moffat J, Menche J, van Attikum H, Jackson SP, Loizou JI. PMID: 29891926; PMCID: PMC5996029.
      View in: PubMed   Mentions: 24     Fields:    Translation:HumansCells
    78. Heterogeneous muscle gene expression patterns in patients with massive rotator cuff tears. PLoS One. 2018; 13(1):e0190439. Gibbons MC, Fisch KM, Pichika R, Cheng T, Engler AJ, Schenk S, Lane JG, Singh A, Ward SR. PMID: 29293645; PMCID: PMC5749784.
      View in: PubMed   Mentions: 6     Fields:    Translation:Humans
    79. Interactive network visualization in Jupyter notebooks: visJS2jupyter. Bioinformatics. 2018 01 01; 34(1):126-128. Rosenthal SB, Len J, Webster M, Gary A, Birmingham A, Fisch KM. PMID: 28968701; PMCID: PMC6075087.
      View in: PubMed   Mentions: 7     Fields:    Translation:HumansCells
    80. Non-coding Transcription Instructs Chromatin Folding and Compartmentalization to Dictate Enhancer-Promoter Communication and T Cell Fate. Cell. 2017 Sep 21; 171(1):103-119.e18. Isoda T, Moore AJ, He Z, Chandra V, Aida M, Denholtz M, Piet van Hamburg J, Fisch KM, Chang AN, Fahl SP, Wiest DL, Murre C. PMID: 28938112; PMCID: PMC5621651.
      View in: PubMed   Mentions: 166     Fields:    Translation:AnimalsCells
    81. Proteasome activity regulates CD8+ T lymphocyte metabolism and fate specification. J Clin Invest. 2017 Oct 02; 127(10):3609-3623. Widjaja CE, Olvera JG, Metz PJ, Phan AT, Savas JN, de Bruin G, Leestemaker Y, Berkers CR, de Jong A, Florea BI, Fisch K, Lopez J, Kim SH, Garcia DA, Searles S, Bui JD, Chang AN, Yates JR, Goldrath AW, Overkleeft HS, Ovaa H, Chang JT. PMID: 28846070; PMCID: PMC5617668.
      View in: PubMed   Mentions: 27     Fields:    Translation:AnimalsCells
    82. Interaction Landscape of Inherited Polymorphisms with Somatic Events in Cancer. Cancer Discov. 2017 04; 7(4):410-423. Carter H, Marty R, Hofree M, Gross AM, Jensen J, Fisch KM, Wu X, DeBoever C, Van Nostrand EL, Song Y, Wheeler E, Kreisberg JF, Lippman SM, Yeo GW, Gutkind JS, Ideker T. PMID: 28188128; PMCID: PMC5460679.
      View in: PubMed   Mentions: 75     Fields:    Translation:HumansCells
    83. Selective Whole-Genome Amplification Is a Robust Method That Enables Scalable Whole-Genome Sequencing of Plasmodium vivax from Unprocessed Clinical Samples. mBio. 2017 02 07; 8(1). Cowell AN, Loy DE, Sundararaman SA, Valdivia H, Fisch K, Lescano AG, Baldeviano GC, Durand S, Gerbasi V, Sutherland CJ, Nolder D, Vinetz JM, Hahn BH, Winzeler EA. PMID: 28174312; PMCID: PMC5296604.
      View in: PubMed   Mentions: 37     Fields:    Translation:HumansAnimals
    84. Dysregulated circadian rhythm pathway in human osteoarthritis: NR1D1 and BMAL1 suppression alters TGF-β signaling in chondrocytes. Osteoarthritis Cartilage. 2017 06; 25(6):943-951. Akagi R, Akatsu Y, Fisch KM, Alvarez-Garcia O, Teramura T, Muramatsu Y, Saito M, Sasho T, Su AI, Lotz MK. PMID: 27884645; PMCID: PMC5438901.
      View in: PubMed   Mentions: 40     Fields:    Translation:HumansCells
    85. Id3 Orchestrates Germinal Center B Cell Development. Mol Cell Biol. 2016 10 15; 36(20):2543-52. Chen S, Miyazaki M, Chandra V, Fisch KM, Chang AN, Murre C. PMID: 27457619; PMCID: PMC5038142.
      View in: PubMed   Mentions: 17     Fields:    Translation:AnimalsCellsPHPublic Health
    86. Increased DNA Methylation and Reduced Expression of Transcription Factors in Human Osteoarthritis Cartilage. Arthritis Rheumatol. 2016 08; 68(8):1876-86. Alvarez-Garcia O, Fisch KM, Wineinger NE, Akagi R, Saito M, Sasho T, Su AI, Lotz MK. PMID: 26881698; PMCID: PMC4963260.
      View in: PubMed   Mentions: 36     Fields:    Translation:HumansCells
    87. Suppression of REDD1 in osteoarthritis cartilage, a novel mechanism for dysregulated mTOR signaling and defective autophagy. Osteoarthritis Cartilage. 2016 09; 24(9):1639-47. Alvarez-Garcia O, Olmer M, Akagi R, Akasaki Y, Fisch KM, Shen T, Su AI, Lotz MK. PMID: 27118398; PMCID: PMC4992644.
      View in: PubMed   Mentions: 26     Fields:    Translation:HumansAnimalsCells
    88. Downregulation of 26S proteasome catalytic activity promotes epithelial-mesenchymal transition. Oncotarget. 2016 Apr 19; 7(16):21527-41. Banno A, Garcia DA, van Baarsel ED, Metz PJ, Fisch K, Widjaja CE, Kim SH, Lopez J, Chang AN, Geurink PP, Florea BI, Overkleeft HS, Ovaa H, Bui JD, Yang J, Chang JT. PMID: 26930717; PMCID: PMC5008303.
      View in: PubMed   Mentions: 21     Fields:    Translation:HumansAnimalsCells
    89. OncoRep: an n-of-1 reporting tool to support genome-guided treatment for breast cancer patients using RNA-sequencing. BMC Med Genomics. 2015 May 21; 8:24. Meißner T, Fisch KM, Gioia L, Su AI. PMID: 25989980; PMCID: PMC4494802.
      View in: PubMed   Mentions: 5     Fields:    Translation:Humans
    90. Omics Pipe: a community-based framework for reproducible multi-omics data analysis. Bioinformatics. 2015 Jun 01; 31(11):1724-8. Fisch KM, Meißner T, Gioia L, Ducom JC, Carland TM, Loguercio S, Su AI. PMID: 25637560; PMCID: PMC4443682.
      View in: PubMed   Mentions: 32     Fields:    Translation:Humans
    91. Fish hatchery genetic management techniques: Integrating Theory with Implementation. North American Journal of Aquaculture: HaMAR Special Section. 2015; 3(77):343-357. Fisch, K., Kozfkay, C., Ivy, J., Ryder, O., R. Waples.
    92. Spawning behavior of cultured delta smelt (Hypomesus transpacificus) in a conservation hatchery. North American Journal of Aquaculture. 2015; 3(77):255-266. LaCava, M., Fisch, K., Nagel, M., Lindberg, J., May, B., Finger, A.
    93. Oxidative stress diverts tRNA synthetase to nucleus for protection against DNA damage. Mol Cell. 2014 Oct 23; 56(2):323-332. Wei N, Shi Y, Truong LN, Fisch KM, Xu T, Gardiner E, Fu G, Hsu YO, Kishi S, Su AI, Wu X, Yang XL. PMID: 25284223; PMCID: PMC4224670.
      View in: PubMed   Mentions: 37     Fields:    Translation:HumansAnimalsCells
    94. Hybridization between delta smelt and two other species within the family Osmeridae in the San Francisco Bay-Delta. Conservation Genetics. 2014; (15):489-494. Fisch, K., Mahardja, B., Burton, R., May, B.
    95. Aquaculture methods for a genetically managed population of endangered delta smelt. North American Journal of Aquaculture. 2013; 2(75):186-196. Lindberg, J., Tigan, G., Ellison, L., Rettinghouse, T., Nagel, M., Fisch, K.
    96. Evaluating the performance of captive breeding techniques for conservation hatcheries: a case study of the delta smelt captive breeding program. J Hered. 2013 Jan-Feb; 104(1):92-104. Fisch KM, Ivy JA, Burton RS, May B. PMID: 23125405.
      View in: PubMed   Mentions: 6     Fields:    Translation:AnimalsCells
    97. Population genetics and conservation implications for the endangered delta smelt in the San Francisco Bay-Delta. Conservation Genetics. 2011; 6(12):1421-1434. Fisch, K., Henderson, J., Burton, R., May, B.
    98. Conservation of native Bay-Delta fishes: past experience and future considerations for artificial propagation of Chinook salmon, delta smelt, and green sturgeon. San Francisco Estuary & Watershed Science. 2011; 1(9):1-20. Israel, J., Fisch, K., Turner, T., Waples, R.
    99. Characterization of 24 microsatellite loci in delta smelt, Hypomesus transpacificus, and their cross-species amplification in two other smelt species of the Osmeridae family. Mol Ecol Resour. 2009 Jan; 9(1):405-8. Fisch KM, Petersen JL, Baerwald MR, Pedroia JK, May B. PMID: 21564663.
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