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Mark Ellisman

TitleProfessor
InstitutionUniversity of California San Diego
DepartmentNeurosciences
Address9500 Gilman Drive #0608
La Jolla CA 92093
Phone858-534-2251
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    Collapse Research 
    Collapse Research Activities and Funding
    From microscale structure to population coding of normal and learned behavior
    NIH/NINDS R01NS104911Sep 25, 2017 - Jul 31, 2022
    Role: Co-Principal Investigator
    FEI TITAN HALO 300kV INTERMEDIATE VOLTAGE ELECTRON MICROSCOPE
    NIH S10OD021784Apr 1, 2017 - Mar 31, 2018
    Role: Principal Investigator
    Imaging local and global chromatin structure as a 3D continuum within the nucleus
    NIH/NIDA U01DA047731Sep 30, 2015 - Jun 30, 2020
    Role: Co-Principal Investigator
    Imaging local and global chromatin structure as a 3D continuum within the nucleus
    NIH/NIBIB U01EB021247Sep 30, 2015 - Jun 30, 2020
    Role: Principal Investigator
    CRCNS: Deciphering the Dynamical Multi-Scale Structure-Function Relation of Dendritic Spines
    NIH/NIDA R01DA038896Jul 1, 2014 - Jun 30, 2019
    Role: Principal Investigator
    Transcellular Degradation of Mitochondria in the Central Nervous System
    NIH/NEI R01EY022680Sep 1, 2012 - Jun 30, 2016
    Role: Principal Investigator
    SLASH: SCALABLE LARGE ANALYTIC SEGMENTATION HYBRID
    NIH/NINDS R01NS075314May 1, 2011 - Apr 30, 2015
    Role: Principal Investigator
    SERIAL BLOCK-FACE SCANNER FOR MESO-SCALE BIOLOGICAL IMAGING
    NIH/NCRR S10RR027385Dec 24, 2009 - Dec 23, 2011
    Role: Principal Investigator
    New Probe and Methods for Correlated LM & EM
    NIH/NIGMS R01GM086197Sep 30, 2008 - Apr 30, 2021
    Role: Co-Principal Investigator
    Support of and Extensions to the Cell Image Library
    NIH/NIGMS R01GM082949Sep 30, 2007 - Jun 30, 2020
    Role: Principal Investigator
    A Replacement 300 Kv IVEM for Meso-scale 3D Data Acquisition at the NCMIR
    NIH/NCRR S10RR023026May 1, 2007 - Apr 30, 2008
    Role: Principal Investigator
    THE FOURTH INTERNATIONAL CONGRESS ON ELECTRON TOMOGRAPHY
    NIH/NIGMS R13GM077866Sep 1, 2006 - Aug 31, 2007
    Role: Principal Investigator
    National Alliance for Medical Image Computing (NAMIC)
    NIH U54EB005149Sep 17, 2004 - Jun 30, 2014
    Role: Co-Investigator
    BIOMEDICAL IMAGING RESEARCH NETWORK
    NIH/NCRR U24RR019701Jul 26, 2004 - Apr 30, 2010
    Role: Principal Investigator
    CRCNS: ASSEMBLING VISIBLE NEURONS FOR SIMULATION
    NIH/NINDS R01NS046068Sep 30, 2002 - Aug 31, 2007
    Role: Principal Investigator
    DETECTION AND MODELS OF TOXICANT EXPOSURE
    NIH/NIEHS P42ES010337Jul 1, 2000 - Mar 31, 2022
    Role: Co-Investigator
    PKA & PKC Targeting Mechanisms (Program Project)
    NIH/NIDDK P01DK054441Dec 15, 1998 - Mar 31, 2018
    Role: Co-Investigator
    DEVELOPMENT OF A 3D CELL-CENTERED NEURONAL DATABASE
    NIH/NIDCD R01DC003192Sep 30, 1997 - Jun 14, 2003
    Role: Principal Investigator
    IVEM and Image Analysis Resource
    NIH/NIGMS P41GM103412May 15, 1997 - Mar 31, 2019
    Role: Principal Investigator
    NATIONAL BIOMEDICAL COMPUTATION RESOURCE
    NIH P41RR008605Apr 15, 1994 - Apr 30, 2014
    Role: Co-Investigator
    UNIVERSITY OF CALIFORNIA, SAN DIEGO MBRS PROGRAM
    NIH S06GM047165Sep 20, 1991 - Apr 30, 2000
    Role: Co-Investigator
    High Performance Computing for Biomedical Research
    NIH P41RR006009Sep 1, 1990 - Jul 31, 2013
    Role: Co-Investigator
    Integrated Center for InVivo Microscopy
    NIH P41RR005959Sep 1, 1990 - Jun 30, 2013
    Role: Co-Investigator
    PACKAGING AND AXONAL TRANSPORT OF THREE MACROMOLECULES
    NIH/NINDS R01NS026739Aug 1, 1989 - Jul 31, 1997
    Role: Principal Investigator
    DYNAMICS OF SIGNAL TRANSDUCTION IN NEURONS
    NIH/NINDS R01NS027177Apr 1, 1989 - Dec 31, 2017
    Role: Principal Investigator
    IVEM and Image Analysis Resource
    NIH/NCRR P41RR004050Dec 12, 1988 - Mar 31, 2014
    Role: Principal Investigator
    DYNAMICS OF MEMBRANE ORGANIZATION AT NODE OF RANVIER
    NIH/NINDS R01NS014718Jul 1, 1978 - Apr 30, 2008
    Role: Principal Investigator

    Collapse Bibliographic 
    Collapse Publications
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help.
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    1. Haberl MG, Churas C, Tindall L, Boassa D, Phan S, Bushong EA, Madany M, Akay R, Deerinck TJ, Peltier ST, Ellisman MH. CDeep3M-Plug-and-Play cloud-based deep learning for image segmentation. Nat Methods. 2018 Sep; 15(9):677-680. PMID: 30171236.
      View in: PubMed
    2. Zerbi V, Ielacqua GD, Markicevic M, Haberl MG, Ellisman MH, A-Bhaskaran A, Frick A, Rudin M, Wenderoth N. Dysfunctional Autism Risk Genes Cause Circuit-Specific Connectivity Deficits With Distinct Developmental Trajectories. Cereb Cortex. 2018 Jul 01; 28(7):2495-2506. PMID: 29901787.
      View in: PubMed
    3. Katchalski T, Case T, Kim KY, Ramachandra R, Bushong EA, Deerinck TJ, Haberl MG, Mackey MR, Peltier S, Castillon GA, Fujikawa N, Lawrence AR, Ellisman MH. Iron-specific Signal Separation from within Heavy Metal Stained Biological Samples Using X-Ray Microtomography with Polychromatic Source and Energy-Integrating Detectors. Sci Rep. 2018 May 15; 8(1):7553. PMID: 29765060.
      View in: PubMed
    4. Tsang TK, Bushong EA, Boassa D, Hu J, Romoli B, Phan S, Dulcis D, Su CY, Ellisman MH. High-quality ultrastructural preservation using cryofixation for 3D electron microscopy of genetically labeled tissues. Elife. 2018 May 11; 7. PMID: 29749931.
      View in: PubMed
    5. McGlynn SE, Chadwick GL, O'Neill A, Mackey M, Thor A, Deerinck TJ, Ellisman MH, Orphan VJ. Subgroup characteristics of marine methane-oxidizing ANME-2 archaea and their syntrophic partners revealed by integrated multimodal analytical microscopy. Appl Environ Microbiol. 2018 Apr 06. PMID: 29625978.
      View in: PubMed
    6. Shim MS, Kim KY, Bu JH, Nam HS, Jeong SW, Park TL, Ellisman MH, Weinreb RN, Ju WK. Elevated intracellular cAMP exacerbates vulnerability to oxidative stress in optic nerve head astrocytes. Cell Death Dis. 2018 Feb 19; 9(3):285. PMID: 29459737.
      View in: PubMed
    7. Lee JK, Enciso GA, Boassa D, Chander CN, Lou TH, Pairawan SS, Guo MC, Wan FYM, Ellisman MH, Sütterlin C, Tan M. Replication-dependent size reduction precedes differentiation in Chlamydia trachomatis. Nat Commun. 2018 01 03; 9(1):45. PMID: 29298975.
      View in: PubMed
    8. Zhao H, Perkins GA, Yao H, Callacondo D, Appenzeller O, Ellisman M, La Spada AR, Haddad GG. MITOCHONDRIAL DYSFUNCTION IN IPSC-DERIVED NEURONS OF SUBJECTS WITH CHRONIC MOUNTAIN SICKNESS. J Appl Physiol (1985). 2017 Dec 21. PMID: 29357502.
      View in: PubMed
    9. Petersen MA, Ryu JK, Chang KJ, Etxeberria A, Bardehle S, Mendiola AS, Kamau-Devers W, Fancy SPJ, Thor A, Bushong EA, Baeza-Raja B, Syme CA, Wu MD, Rios Coronado PE, Meyer-Franke A, Yahn S, Pous L, Lee JK, Schachtrup C, Lassmann H, Huang EJ, Han MH, Absinta M, Reich DS, Ellisman MH, Rowitch DH, Chan JR, Akassoglou K. Fibrinogen Activates BMP Signaling in Oligodendrocyte Progenitor Cells and Inhibits Remyelination after Vascular Damage. Neuron. 2017 Dec 06; 96(5):1003-1012.e7. PMID: 29103804.
      View in: PubMed
    10. Churas C, Perez AJ, Hakozaki H, Wong W, Lee D, Peltier ST, Ellisman MH. Probability Map Viewer: near real-time probability map generator of serial block electron microscopy collections. Bioinformatics. 2017 Oct 01; 33(19):3145-3147. PMID: 28957496.
      View in: PubMed
    11. Vollnhals F, Audinot JN, Wirtz T, Mercier-Bonin M, Fourquaux I, Schroeppel B, Kraushaar U, Lev-Ram V, Ellisman MH, Eswara S. Correlative Microscopy Combining Secondary Ion Mass Spectrometry and Electron Microscopy: Comparison of Intensity-Hue-Saturation and Laplacian Pyramid Methods for Image Fusion. Anal Chem. 2017 Oct 17; 89(20):10702-10710. PMID: 28901122.
      View in: PubMed
    12. Sastri M, Darshi M, Mackey M, Ramachandra R, Ju S, Phan S, Adams S, Stein K, Douglas CR, Kim JJ, Ellisman MH, Taylor SS, Perkins GA. Sub-mitochondrial localization of the genetic-tagged mitochondrial intermembrane space-bridging components Mic19, Mic60 and Sam50. J Cell Sci. 2017 Oct 01; 130(19):3248-3260. PMID: 28808085.
      View in: PubMed
    13. Martell JD, Deerinck TJ, Lam SS, Ellisman MH, Ting AY. Electron microscopy using the genetically encoded APEX2 tag in cultured mammalian cells. Nat Protoc. 2017 Sep; 12(9):1792-1816. PMID: 28796234.
      View in: PubMed
    14. Noma K, Goncharov A, Ellisman MH, Jin Y. Microtubule-dependent ribosome localization in C. elegans neurons. Elife. 2017 Aug 02; 6. PMID: 28767038.
      View in: PubMed
    15. Ou HD, Phan S, Deerinck TJ, Thor A, Ellisman MH, O'Shea CC. ChromEMT: Visualizing 3D chromatin structure and compaction in interphase and mitotic cells. Science. 2017 07 28; 357(6349). PMID: 28751582.
      View in: PubMed
    16. Solga AC, Toonen JA, Pan Y, Cimino PJ, Ma Y, Castillon GA, Gianino SM, Ellisman MH, Lee DY, Gutmann DH. The cell of origin dictates the temporal course of neurofibromatosis-1 (Nf1) low-grade glioma formation. Oncotarget. 2017 Jul 18; 8(29):47206-47215. PMID: 28525381.
      View in: PubMed
    17. Koehler CL, Perkins GA, Ellisman MH, Jones DL. Pink1 and Parkin regulate Drosophila intestinal stem cell proliferation during stress and aging. J Cell Biol. 2017 08 07; 216(8):2315-2327. PMID: 28663346.
      View in: PubMed
    18. Goo MS, Sancho L, Slepak N, Boassa D, Deerinck TJ, Ellisman MH, Bloodgood BL, Patrick GN. Activity-dependent trafficking of lysosomes in dendrites and dendritic spines. J Cell Biol. 2017 08 07; 216(8):2499-2513. PMID: 28630145.
      View in: PubMed
    19. Sando R, Bushong E, Zhu Y, Huang M, Considine C, Phan S, Ju S, Uytiepo M, Ellisman M, Maximov A. Assembly of Excitatory Synapses in the Absence of Glutamatergic Neurotransmission. Neuron. 2017 Apr 19; 94(2):312-321.e3. PMID: 28426966.
      View in: PubMed
    20. Wan X, Katchalski T, Churas C, Ghosh S, Phan S, Lawrence A, Hao Y, Zhou Z, Chen R, Chen Y, Zhang F, Ellisman MH. Electron tomography simulator with realistic 3D phantom for evaluation of acquisition, alignment and reconstruction methods. J Struct Biol. 2017 05; 198(2):103-115. PMID: 28392451.
      View in: PubMed
    21. Falkenberg CV, Azeloglu EU, Stothers M, Deerinck TJ, Chen Y, He JC, Ellisman MH, Hone JC, Iyengar R, Loew LM. Fragility of foot process morphology in kidney podocytes arises from chaotic spatial propagation of cytoskeletal instability. PLoS Comput Biol. 2017 Mar; 13(3):e1005433. PMID: 28301477.
      View in: PubMed
    22. Han S, Udeshi ND, Deerinck TJ, Svinkina T, Ellisman MH, Carr SA, Ting AY. Proximity Biotinylation as a Method for Mapping Proteins Associated with mtDNA in Living Cells. Cell Chem Biol. 2017 Mar 16; 24(3):404-414. PMID: 28238724.
      View in: PubMed
    23. Cao M, Wu Y, Ashrafi G, McCartney AJ, Wheeler H, Bushong EA, Boassa D, Ellisman MH, Ryan TA, De Camilli P. Parkinson Sac Domain Mutation in Synaptojanin 1 Impairs Clathrin Uncoating at Synapses and Triggers Dystrophic Changes in Dopaminergic Axons. Neuron. 2017 Feb 22; 93(4):882-896.e5. PMID: 28231468.
      View in: PubMed
    24. de Vivo L, Bellesi M, Marshall W, Bushong EA, Ellisman MH, Tononi G, Cirelli C. Ultrastructural evidence for synaptic scaling across the wake/sleep cycle. Science. 2017 02 03; 355(6324):507-510. PMID: 28154076.
      View in: PubMed
    25. Hammerling BC, Najor RH, Cortez MQ, Shires SE, Leon LJ, Gonzalez ER, Boassa D, Phan S, Thor A, Jimenez RE, Li H, Kitsis RN, Dorn Ii GW, Sadoshima J, Ellisman MH, Gustafsson ÅB. A Rab5 endosomal pathway mediates Parkin-dependent mitochondrial clearance. Nat Commun. 2017 Jan 30; 8:14050. PMID: 28134239.
      View in: PubMed
    26. Ilouz R, Lev-Ram V, Bushong EA, Stiles TL, Friedmann-Morvinski D, Douglas C, Goldberg JL, Ellisman MH, Taylor SS. Isoform-specific subcellular localization and function of protein kinase A identified by mosaic imaging of mouse brain. Elife. 2017 01 12; 6. PMID: 28079521.
      View in: PubMed
    27. Pipkin JE, Bushong EA, Ellisman MH, Kristan WB. Patterns and distribution of presynaptic and postsynaptic elements within serial electron microscopic reconstructions of neuronal arbors from the medicinal leech Hirudo verbana. J Comp Neurol. 2016 Dec 15; 524(18):3677-3695. PMID: 27636374.
      View in: PubMed
    28. Gillies AR, Chapman MA, Bushong EA, Deerinck TJ, Ellisman MH, Lieber RL. High resolution three-dimensional reconstruction of fibrotic skeletal muscle extracellular matrix. J Physiol. 2017 Feb 15; 595(4):1159-1171. PMID: 27859324.
      View in: PubMed
    29. Yin X, Kidd GJ, Ohno N, Perkins GA, Ellisman MH, Bastian C, Brunet S, Baltan S, Trapp BD. Proteolipid protein-deficient myelin promotes axonal mitochondrial dysfunction via altered metabolic coupling. J Cell Biol. 2016 Nov 21; 215(4):531-542. PMID: 27872255.
      View in: PubMed
    30. Adams SR, Mackey MR, Ramachandra R, Palida Lemieux SF, Steinbach P, Bushong EA, Butko MT, Giepmans BNG, Ellisman MH, Tsien RY. Multicolor Electron Microscopy for Simultaneous Visualization of Multiple Molecular Species. Cell Chem Biol. 2016 Nov 17; 23(11):1417-1427. PMID: 27818300.
      View in: PubMed
    31. Bouwer JC, Deerinck TJ, Bushong E, Astakhov V, Ramachandra R, Peltier ST, Ellisman MH. Deceleration of probe beam by stage bias potential improves resolution of serial block-face scanning electron microscopic images. Adv Struct Chem Imaging. 2017; 2(1):11. PMID: 27695667.
      View in: PubMed
    32. Hu B, Arpag S, Zhang X, Möbius W, Werner H, Sosinsky G, Ellisman M, Zhang Y, Hamilton A, Chernoff J, Li J. Tuning PAK Activity to Rescue Abnormal Myelin Permeability in HNPP. PLoS Genet. 2016 Sep; 12(9):e1006290. PMID: 27583434; PMCID: PMC5008806.
    33. Loh KH, Stawski PS, Draycott AS, Udeshi ND, Lehrman EK, Wilton DK, Svinkina T, Deerinck TJ, Ellisman MH, Stevens B, Carr SA, Ting AY. Proteomic Analysis of Unbounded Cellular Compartments: Synaptic Clefts. Cell. 2016 Aug 25; 166(5):1295-1307.e21. PMID: 27565350.
      View in: PubMed
    34. Phan S, Boassa D, Nguyen P, Wan X, Lanman J, Lawrence A, Ellisman MH. 3D reconstruction of biological structures: automated procedures for alignment and reconstruction of multiple tilt series in electron tomography. Adv Struct Chem Imaging. 2017; 2:8. PMID: 27547706.
      View in: PubMed
    35. Martell JD, Yamagata M, Deerinck TJ, Phan S, Kwa CG, Ellisman MH, Sanes JR, Ting AY. A split horseradish peroxidase for the detection of intercellular protein-protein interactions and sensitive visualization of synapses. Nat Biotechnol. 2016 07; 34(7):774-80. PMID: 27240195; PMCID: PMC4942342 [Available on 11/30/16].
    36. Ou HD, Deerinck TJ, Bushong E, Ellisman MH, O'Shea CC. Corrigendum to 'Visualizing viral protein structures in cells using genetic probes for correlated light and electron microscopy' [Methods 90 (2015) 39-48]. Methods. 2016 Jul 15; 104:206. PMID: 27221672.
      View in: PubMed
    37. Ngo JT, Adams SR, Deerinck TJ, Boassa D, Rodriguez-Rivera F, Palida SF, Bertozzi CR, Ellisman MH, Tsien RY. Click-EM for imaging metabolically tagged nonprotein biomolecules. Nat Chem Biol. 2016 06; 12(6):459-65. PMID: 27110681; PMCID: PMC4871776 [Available on 10/25/16].
    38. Moss J, Gebara E, Bushong EA, Sánchez-Pascual I, O'Laoi R, El M'Ghari I, Kocher-Braissant J, Ellisman MH, Toni N. Fine processes of Nestin-GFP-positive radial glia-like stem cells in the adult dentate gyrus ensheathe local synapses and vasculature. Proc Natl Acad Sci U S A. 2016 May 03; 113(18):E2536-45. PMID: 27091993; PMCID: PMC4983830 [Available on 11/03/16].
    39. Hutchison CA, Chuang RY, Noskov VN, Assad-Garcia N, Deerinck TJ, Ellisman MH, Gill J, Kannan K, Karas BJ, Ma L, Pelletier JF, Qi ZQ, Richter RA, Strychalski EA, Sun L, Suzuki Y, Tsvetanova B, Wise KS, Smith HO, Glass JI, Merryman C, Gibson DG, Venter JC. Design and synthesis of a minimal bacterial genome. Science. 2016 Mar 25; 351(6280):aad6253. PMID: 27013737.
      View in: PubMed
    40. Jung JY, Naleway SE, Yaraghi NA, Herrera S, Sherman VR, Bushong EA, Ellisman MH, Kisailus D, McKittrick J. Structural analysis of the tongue and hyoid apparatus in a woodpecker. Acta Biomater. 2016 06; 37:1-13. PMID: 27000554.
      View in: PubMed
    41. Zhong Z, Umemura A, Sanchez-Lopez E, Liang S, Shalapour S, Wong J, He F, Boassa D, Perkins G, Ali SR, McGeough MD, Ellisman MH, Seki E, Gustafsson AB, Hoffman HM, Diaz-Meco MT, Moscat J, Karin M. NF-?B Restricts Inflammasome Activation via Elimination of Damaged Mitochondria. Cell. 2016 Feb 25; 164(5):896-910. PMID: 26919428; PMCID: PMC4769378 [Available on 02/25/17].
    42. Rubio-Marrero EN, Vincelli G, Jeffries CM, Shaikh TR, Pakos IS, Ranaivoson FM, von Daake S, Demeler B, De Jaco A, Perkins G, Ellisman MH, Trewhella J, Comoletti D. Structural Characterization of the Extracellular Domain of CASPR2 and Insights into Its Association with the Novel Ligand Contactin1. J Biol Chem. 2016 Mar 11; 291(11):5788-802. PMID: 26721881; PMCID: PMC4786715 [Available on 03/11/17].
    43. Antonucci L, Fagman JB, Kim JY, Todoric J, Gukovsky I, Mackey M, Ellisman MH, Karin M. Basal autophagy maintains pancreatic acinar cell homeostasis and protein synthesis and prevents ER stress. Proc Natl Acad Sci U S A. 2015 Nov 10; 112(45):E6166-74. PMID: 26512112; PMCID: PMC4653219.
    44. Solga AC, Pong WW, Kim KY, Cimino PJ, Toonen JA, Walker J, Wylie T, Magrini V, Griffith M, Griffith OL, Ly A, Ellisman MH, Mardis ER, Gutmann DH. RNA Sequencing of Tumor-Associated Microglia Reveals Ccl5 as a Stromal Chemokine Critical for Neurofibromatosis-1 Glioma Growth. Neoplasia. 2015 Oct; 17(10):776-88. PMID: 26585233; PMCID: PMC4656811.
    45. Rajagopal V, Bass G, Walker CG, Crossman DJ, Petzer A, Hickey A, Siekmann I, Hoshijima M, Ellisman MH, Crampin EJ, Soeller C. Examination of the Effects of Heterogeneous Organization of RyR Clusters, Myofibrils and Mitochondria on Ca2+ Release Patterns in Cardiomyocytes. PLoS Comput Biol. 2015 Sep; 11(9):e1004417. PMID: 26335304; PMCID: PMC4559435.
    46. Komin N, Moein M, Ellisman MH, Skupin A. Multiscale Modeling Indicates That Temperature Dependent [Ca2+]i Spiking in Astrocytes Is Quantitatively Consistent with Modulated SERCA Activity. Neural Plast. 2015; 2015:683490. PMID: 26347125; PMCID: PMC4539483.
    47. Mills EA, Davis CH, Bushong EA, Boassa D, Kim KY, Ellisman MH, Marsh-Armstrong N. Astrocytes phagocytose focal dystrophies from shortening myelin segments in the optic nerve of Xenopus laevis at metamorphosis. Proc Natl Acad Sci U S A. 2015 Aug 18; 112(33):10509-14. PMID: 26240339; PMCID: PMC4547286.
    48. Schachtrup C, Ryu JK, Mammadzada K, Khan AS, Carlton PM, Perez A, Christian F, Le Moan N, Vagena E, Baeza-Raja B, Rafalski V, Chan JP, Nitschke R, Houslay MD, Ellisman MH, Wyss-Coray T, Palop JJ, Akassoglou K. Nuclear pore complex remodeling by p75(NTR) cleavage controls TGF-ß signaling and astrocyte functions. Nat Neurosci. 2015 Aug; 18(8):1077-80. PMID: 26120963; PMCID: PMC4878404.
    49. Ou HD, Deerinck TJ, Bushong E, Ellisman MH, O'Shea CC. Visualizing viral protein structures in cells using genetic probes for correlated light and electron microscopy. Methods. 2015 Nov 15; 90:39-48. PMID: 26066760; PMCID: PMC4655137 [Available on 11/15/16].
    50. Palida SF, Butko MT, Ngo JT, Mackey MR, Gross LA, Ellisman MH, Tsien RY. PKM?, but not PKC?, is rapidly synthesized and degraded at the neuronal synapse. J Neurosci. 2015 May 20; 35(20):7736-49. PMID: 25995463; PMCID: PMC4438124.
    51. Karas BJ, Diner RE, Lefebvre SC, McQuaid J, Phillips AP, Noddings CM, Brunson JK, Valas RE, Deerinck TJ, Jablanovic J, Gillard JT, Beeri K, Ellisman MH, Glass JI, Hutchison CA, Smith HO, Venter JC, Allen AE, Dupont CL, Weyman PD. Designer diatom episomes delivered by bacterial conjugation. Nat Commun. 2015 Apr 21; 6:6925. PMID: 25897682; PMCID: PMC4411287.
    52. Kim D, Deerinck TJ, Sigal YM, Babcock HP, Ellisman MH, Zhuang X. Correlative stochastic optical reconstruction microscopy and electron microscopy. PLoS One. 2015; 10(4):e0124581. PMID: 25874453; PMCID: PMC4398493.
    53. Jones C, Liu T, Cohan NW, Ellisman M, Tasdizen T. Efficient semi-automatic 3D segmentation for neuron tracing in electron microscopy images. J Neurosci Methods. 2015 May 15; 246:13-21. PMID: 25769273; PMCID: PMC4398646.
    54. Boassa D, Nguyen P, Hu J, Ellisman MH, Sosinsky GE. Pannexin2 oligomers localize in the membranes of endosomal vesicles in mammalian cells while Pannexin1 channels traffic to the plasma membrane. Front Cell Neurosci. 2014; 8:468. PMID: 25698922; PMCID: PMC4313697.
    55. Ju WK, Kim KY, Noh YH, Hoshijima M, Lukas TJ, Ellisman MH, Weinreb RN, Perkins GA. Increased mitochondrial fission and volume density by blocking glutamate excitotoxicity protect glaucomatous optic nerve head astrocytes. Glia. 2015 May; 63(5):736-53. PMID: 25557093; PMCID: PMC4373968.
    56. Lam SS, Martell JD, Kamer KJ, Deerinck TJ, Ellisman MH, Mootha VK, Ting AY. Directed evolution of APEX2 for electron microscopy and proximity labeling. Nat Methods. 2015 Jan; 12(1):51-4. PMID: 25419960; PMCID: PMC4296904.
    57. Bushong EA, Johnson DD, Kim KY, Terada M, Hatori M, Peltier ST, Panda S, Merkle A, Ellisman MH. X-ray microscopy as an approach to increasing accuracy and efficiency of serial block-face imaging for correlated light and electron microscopy of biological specimens. Microsc Microanal. 2015 Feb; 21(1):231-8. PMID: 25392009; PMCID: PMC4415271.
    58. Perez AJ, Seyedhosseini M, Deerinck TJ, Bushong EA, Panda S, Tasdizen T, Ellisman MH. A workflow for the automatic segmentation of organelles in electron microscopy image stacks. Front Neuroanat. 2014; 8:126. PMID: 25426032; PMCID: PMC4224098.
    59. Liu DS, Nivón LG, Richter F, Goldman PJ, Deerinck TJ, Yao JZ, Richardson D, Phipps WS, Ye AZ, Ellisman MH, Drennan CL, Baker D, Ting AY. Computational design of a red fluorophore ligase for site-specific protein labeling in living cells. Proc Natl Acad Sci U S A. 2014 Oct 28; 111(43):E4551-9. PMID: 25313043; PMCID: PMC4217414.
    60. Gillies AR, Bushong EA, Deerinck TJ, Ellisman MH, Lieber RL. Three-dimensional reconstruction of skeletal muscle extracellular matrix ultrastructure. Microsc Microanal. 2014 Dec; 20(6):1835-40. PMID: 25275291; PMCID: PMC4267978.
    61. Patwardhan A, Ashton A, Brandt R, Butcher S, Carzaniga R, Chiu W, Collinson L, Doux P, Duke E, Ellisman MH, Franken E, Grünewald K, Heriche JK, Koster A, Kühlbrandt W, Lagerstedt I, Larabell C, Lawson CL, Saibil HR, Sanz-García E, Subramaniam S, Verkade P, Swedlow JR, Kleywegt GJ. A 3D cellular context for the macromolecular world. Nat Struct Mol Biol. 2014 Oct; 21(10):841-5. PMID: 25289590.
      View in: PubMed
    62. Cleyrat C, Darehshouri A, Steinkamp MP, Vilaine M, Boassa D, Ellisman MH, Hermouet S, Wilson BS. Mpl traffics to the cell surface through conventional and unconventional routes. Traffic. 2014 Sep; 15(9):961-82. PMID: 24931576; PMCID: PMC4141020.
    63. Inokuchi-Shimizu S, Park EJ, Roh YS, Yang L, Zhang B, Song J, Liang S, Pimienta M, Taniguchi K, Wu X, Asahina K, Lagakos W, Mackey MR, Akira S, Ellisman MH, Sears DD, Olefsky JM, Karin M, Brenner DA, Seki E. TAK1-mediated autophagy and fatty acid oxidation prevent hepatosteatosis and tumorigenesis. J Clin Invest. 2014 Aug; 124(8):3566-78. PMID: 24983318; PMCID: PMC4109552.
    64. Davis CH, Kim KY, Bushong EA, Mills EA, Boassa D, Shih T, Kinebuchi M, Phan S, Zhou Y, Bihlmeyer NA, Nguyen JV, Jin Y, Ellisman MH, Marsh-Armstrong N. Transcellular degradation of axonal mitochondria. Proc Natl Acad Sci U S A. 2014 Jul 01; 111(26):9633-8. PMID: 24979790; PMCID: PMC4084443.
    65. Shen H, Huang E, Das T, Xu H, Ellisman M, Liu Z. TIRF microscopy with ultra-short penetration depth. Opt Express. 2014 May 05; 22(9):10728-34. PMID: 24921774.
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    69. Ramachandra R, Bouwer JC, Mackey MR, Bushong E, Peltier ST, Xuong NH, Ellisman MH. Improving signal to noise in labeled biological specimens using energy-filtered TEM of sections with a drift correction strategy and a direct detection device. Microsc Microanal. 2014 Jun; 20(3):706-14. PMID: 24641915; PMCID: PMC4178974.
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    71. Chen R, Wan X, Altintas I, Wang J, Crawl D, Phan S, Lawrence A, Ellisman M. EPiK-a Workflow for Electron Tomography in Kepler. Procedia Comput Sci. 2014; 20:2295-2305. PMID: 25621086.
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    72. Kittelmann M, Hegermann J, Goncharov A, Taru H, Ellisman MH, Richmond JE, Jin Y, Eimer S. Liprin-a/SYD-2 determines the size of dense projections in presynaptic active zones in C. elegans. J Cell Biol. 2013 Dec 09; 203(5):849-63. PMID: 24322429; PMCID: PMC3857474.
    73. Engene N, Paul VJ, Byrum T, Gerwick WH, Thor A, Ellisman MH. Five chemically rich species of tropical marine cyanobacteria of the genus Okeania gen. nov. (Oscillatoriales, Cyanoprokaryota). J Phycol. 2013 Dec; 49(6):1095-106. PMID: 27007630.
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    75. Yin S, Xue J, Sun H, Wen B, Wang Q, Perkins G, Zhao HW, Ellisman MH, Hsiao YH, Yin L, Xie Y, Hou G, Zi J, Lin L, Haddad GG, Zhou D, Liu S. Quantitative evaluation of the mitochondrial proteomes of Drosophila melanogaster adapted to extreme oxygen conditions. PLoS One. 2013; 8(9):e74011. PMID: 24069262; PMCID: PMC3771901.
    76. Liu T, Seyedhosseini M, Ellisman M, Tasdizen T. WATERSHED MERGE FOREST CLASSIFICATION FOR ELECTRON MICROSCOPY IMAGE STACK SEGMENTATION. Proc IEEE Int Conf Comput Vis. 2013 Sep; 2013:4069-4073. PMID: 25484631.
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    78. Holcomb PS, Hoffpauir BK, Hoyson MC, Jackson DR, Deerinck TJ, Marrs GS, Dehoff M, Wu J, Ellisman MH, Spirou GA. Synaptic inputs compete during rapid formation of the calyx of Held: a new model system for neural development. J Neurosci. 2013 Aug 07; 33(32):12954-69. PMID: 23926251; PMCID: PMC3735879.
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    83. Pamenter ME, Perkins GA, Gu XQ, Ellisman MH, Haddad GG. DIDS (4,4-diisothiocyanatostilbenedisulphonic acid) induces apoptotic cell death in a hippocampal neuronal cell line and is not neuroprotective against ischemic stress. PLoS One. 2013; 8(4):e60804. PMID: 23577164; PMCID: PMC3618322.
    84. Orita S, Henry K, Mantuano E, Yamauchi K, De Corato A, Ishikawa T, Feltri ML, Wrabetz L, Gaultier A, Pollack M, Ellisman M, Takahashi K, Gonias SL, Campana WM. Schwann cell LRP1 regulates remak bundle ultrastructure and axonal interactions to prevent neuropathic pain. J Neurosci. 2013 Mar 27; 33(13):5590-602. PMID: 23536074; PMCID: PMC3837698.
    85. Zhao Y, Temperton B, Thrash JC, Schwalbach MS, Vergin KL, Landry ZC, Ellisman M, Deerinck T, Sullivan MB, Giovannoni SJ. Abundant SAR11 viruses in the ocean. Nature. 2013 Feb 21; 494(7437):357-60. PMID: 23407494.
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    90. Jones C, Sayedhosseini M, Ellisman M, Tasdizen T. Neuron Segmentation in Electron Microscopy Images Using Partial Differential Equations. Proc IEEE Int Symp Biomed Imaging. 2013; 2013:1457-1460. PMID: 25143802.
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    95. Kujjo LL, Acton BM, Perkins GA, Ellisman MH, D'Estaing SG, Casper RF, Jurisicova A, Perez GI. Ceramide and its transport protein (CERT) contribute to deterioration of mitochondrial structure and function in aging oocytes. Mech Ageing Dev. 2013 Jan-Feb; 134(1-2):43-52. PMID: 23246342.
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    97. Liu T, Jurrus E, Seyedhosseini M, Ellisman M, Tasdizen T. Watershed Merge Tree Classification for Electron Microscopy Image Segmentation. Proc IAPR Int Conf Pattern Recogn. 2012 Nov; 2012:133-137. PMID: 25485310.
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    99. Butko MT, Yang J, Geng Y, Kim HJ, Jeon NL, Shu X, Mackey MR, Ellisman MH, Tsien RY, Lin MZ. Fluorescent and photo-oxidizing TimeSTAMP tags track protein fates in light and electron microscopy. Nat Neurosci. 2012 Dec; 15(12):1742-51. PMID: 23103964; PMCID: PMC3509268.
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    101. Friedmann-Morvinski D, Bushong EA, Ke E, Soda Y, Marumoto T, Singer O, Ellisman MH, Verma IM. Dedifferentiation of neurons and astrocytes by oncogenes can induce gliomas in mice. Science. 2012 Nov 23; 338(6110):1080-4. PMID: 23087000; PMCID: PMC3595315.
    102. Ou HD, Kwiatkowski W, Deerinck TJ, Noske A, Blain KY, Land HS, Soria C, Powers CJ, May AP, Shu X, Tsien RY, Fitzpatrick JA, Long JA, Ellisman MH, Choe S, O'Shea CC. A structural basis for the assembly and functions of a viral polymer that inactivates multiple tumor suppressors. Cell. 2012 Oct 12; 151(2):304-19. PMID: 23063122; PMCID: PMC3681303.
    103. Lee D, Kim KY, Noh YH, Chai S, Lindsey JD, Ellisman MH, Weinreb RN, Ju WK. Brimonidine blocks glutamate excitotoxicity-induced oxidative stress and preserves mitochondrial transcription factor a in ischemic retinal injury. PLoS One. 2012; 7(10):e47098. PMID: 23056591; PMCID: PMC3467218.
    104. Perkins G, Hsiao YH, Yin S, Tjong J, Tran MT, Lau J, Xue J, Liu S, Ellisman MH, Zhou D. Ultrastructural modifications in the mitochondria of hypoxia-adapted Drosophila melanogaster. PLoS One. 2012; 7(9):e45344. PMID: 23028948; PMCID: PMC3446896.
    105. Lee JH, Budanov AV, Talukdar S, Park EJ, Park HL, Park HW, Bandyopadhyay G, Li N, Aghajan M, Jang I, Wolfe AM, Perkins GA, Ellisman MH, Bier E, Scadeng M, Foretz M, Viollet B, Olefsky J, Karin M. Maintenance of metabolic homeostasis by Sestrin2 and Sestrin3. Cell Metab. 2012 Sep 05; 16(3):311-21. PMID: 22958918; PMCID: PMC3687365.
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    107. Burette AC, Lesperance T, Crum J, Martone M, Volkmann N, Ellisman MH, Weinberg RJ. Electron tomographic analysis of synaptic ultrastructure. J Comp Neurol. 2012 Aug 15; 520(12):2697-711. PMID: 22684938; PMCID: PMC3856703.
    108. Falivelli G, De Jaco A, Favaloro FL, Kim H, Wilson J, Dubi N, Ellisman MH, Abrahams BS, Taylor P, Comoletti D. Inherited genetic variants in autism-related CNTNAP2 show perturbed trafficking and ATF6 activation. Hum Mol Genet. 2012 Nov 01; 21(21):4761-73. PMID: 22872700; PMCID: PMC3471401.
    109. Phan S, Lawrence A, Molina T, Lanman J, Berlanga M, Terada M, Kulungowski A, Obayashi J, Ellisman M. TxBR montage reconstruction for large field electron tomography. J Struct Biol. 2012 Oct; 180(1):154-64. PMID: 22749959.
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    110. Hatori M, Vollmers C, Zarrinpar A, DiTacchio L, Bushong EA, Gill S, Leblanc M, Chaix A, Joens M, Fitzpatrick JA, Ellisman MH, Panda S. Time-restricted feeding without reducing caloric intake prevents metabolic diseases in mice fed a high-fat diet. Cell Metab. 2012 Jun 06; 15(6):848-60. PMID: 22608008; PMCID: PMC3491655.
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    113. Davalos D, Ryu JK, Merlini M, Baeten KM, Le Moan N, Petersen MA, Deerinck TJ, Smirnoff DS, Bedard C, Hakozaki H, Gonias Murray S, Ling JB, Lassmann H, Degen JL, Ellisman MH, Akassoglou K. Fibrinogen-induced perivascular microglial clustering is required for the development of axonal damage in neuroinflammation. Nat Commun. 2012; 3:1227. PMID: 23187627; PMCID: PMC3514498.
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    116. Kett LR, Boassa D, Ho CC, Rideout HJ, Hu J, Terada M, Ellisman M, Dauer WT. LRRK2 Parkinson disease mutations enhance its microtubule association. Hum Mol Genet. 2012 Feb 15; 21(4):890-9. PMID: 22080837; PMCID: PMC3263991.
    117. Yamaguchi R, Janssen E, Perkins G, Ellisman M, Kitada S, Reed JC. Efficient elimination of cancer cells by deoxyglucose-ABT-263/737 combination therapy. PLoS One. 2011; 6(9):e24102. PMID: 21949692; PMCID: PMC3176271.
    118. Milazzo AC, Cheng A, Moeller A, Lyumkis D, Jacovetty E, Polukas J, Ellisman MH, Xuong NH, Carragher B, Potter CS. Initial evaluation of a direct detection device detector for single particle cryo-electron microscopy. J Struct Biol. 2011 Dec; 176(3):404-8. PMID: 21933715; PMCID: PMC3210420.
    119. Foo LC, Allen NJ, Bushong EA, Ventura PB, Chung WS, Zhou L, Cahoy JD, Daneman R, Zong H, Ellisman MH, Barres BA. Development of a method for the purification and culture of rodent astrocytes. Neuron. 2011 Sep 08; 71(5):799-811. PMID: 21903074; PMCID: PMC3172573.
    120. Williams ME, Wilke SA, Daggett A, Davis E, Otto S, Ravi D, Ripley B, Bushong EA, Ellisman MH, Klein G, Ghosh A. Cadherin-9 regulates synapse-specific differentiation in the developing hippocampus. Neuron. 2011 Aug 25; 71(4):640-55. PMID: 21867881.
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    122. Engene N, Rottacker EC, Kaštovský J, Byrum T, Choi H, Ellisman MH, Komárek J, Gerwick WH. Moorea producens gen. nov., sp. nov. and Moorea bouillonii comb. nov., tropical marine cyanobacteria rich in bioactive secondary metabolites. Int J Syst Evol Microbiol. 2012 May; 62(Pt 5):1171-8. PMID: 21724952; PMCID: PMC3542135.
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    126. Engene N, Choi H, Esquenazi E, Rottacker EC, Ellisman MH, Dorrestein PC, Gerwick WH. Underestimated biodiversity as a major explanation for the perceived rich secondary metabolite capacity of the cyanobacterial genus Lyngbya. Environ Microbiol. 2011 Jun; 13(6):1601-10. PMID: 21477107; PMCID: PMC3131211.
    127. Shu X, Lev-Ram V, Deerinck TJ, Qi Y, Ramko EB, Davidson MW, Jin Y, Ellisman MH, Tsien RY. A genetically encoded tag for correlated light and electron microscopy of intact cells, tissues, and organisms. PLoS Biol. 2011 Apr; 9(4):e1001041. PMID: 21483721; PMCID: PMC3071375.
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    129. Song W, Chen J, Petrilli A, Liot G, Klinglmayr E, Zhou Y, Poquiz P, Tjong J, Pouladi MA, Hayden MR, Masliah E, Ellisman M, Rouiller I, Schwarzenbacher R, Bossy B, Perkins G, Bossy-Wetzel E. Mutant huntingtin binds the mitochondrial fission GTPase dynamin-related protein-1 and increases its enzymatic activity. Nat Med. 2011 Mar; 17(3):377-82. PMID: 21336284; PMCID: PMC3051025.
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    131. Nguyen JV, Soto I, Kim KY, Bushong EA, Oglesby E, Valiente-Soriano FJ, Yang Z, Davis CH, Bedont JL, Son JL, Wei JO, Buchman VL, Zack DJ, Vidal-Sanz M, Ellisman MH, Marsh-Armstrong N. Myelination transition zone astrocytes are constitutively phagocytic and have synuclein dependent reactivity in glaucoma. Proc Natl Acad Sci U S A. 2011 Jan 18; 108(3):1176-81. PMID: 21199938.
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    133. Gaietta GM, Deerinck TJ, Ellisman MH. Fluorescence photoconversion of biarsenical-labeled cells for correlated electron microscopy (EM). Cold Spring Harb Protoc. 2011 Jan 01; 2011(1):pdb.prot5548. PMID: 21205848.
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    135. Gaietta GM, Deerinck TJ, Ellisman MH. Labeling tetracysteine-tagged proteins with biarsenical dyes for live cell imaging. Cold Spring Harb Protoc. 2011 Jan 01; 2011(1):pdb.prot5547. PMID: 21205847.
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    137. Price DL, Rockenstein E, Ubhi K, Phung V, MacLean-Lewis N, Askay D, Cartier A, Spencer B, Patrick C, Desplats P, Ellisman MH, Masliah E. Alterations in mGluR5 expression and signaling in Lewy body disease and in transgenic models of alpha-synucleinopathy--implications for excitotoxicity. PLoS One. 2010 Nov 16; 5(11):e14020. PMID: 21103359; PMCID: PMC2982819.
    138. Darshi M, Mendiola VL, Mackey MR, Murphy AN, Koller A, Perkins GA, Ellisman MH, Taylor SS. ChChd3, an inner mitochondrial membrane protein, is essential for maintaining crista integrity and mitochondrial function. J Biol Chem. 2011 Jan 28; 286(4):2918-32. PMID: 21081504; PMCID: PMC3024787.
    139. Sun S, Chen J, Li W, Altintas I, Lin A, Peltier S, Stocks K, Allen EE, Ellisman M, Grethe J, Wooley J. Community cyberinfrastructure for Advanced Microbial Ecology Research and Analysis: the CAMERA resource. Nucleic Acids Res. 2011 Jan; 39(Database issue):D546-51. PMID: 21045053; PMCID: PMC3013694.
    140. Hoshijima M, Hayashi T, Jeon YE, Fu Z, Gu Y, Dalton ND, Ellisman MH, Xiao X, Powell FL, Ross J. Delta-sarcoglycan gene therapy halts progression of cardiac dysfunction, improves respiratory failure, and prolongs life in myopathic hamsters. Circ Heart Fail. 2011 Jan; 4(1):89-97. PMID: 21036890; PMCID: PMC3742303.
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    142. Xia K, Xiong H, Shin Y, Wang D, Deerinck T, Takahashi H, Ellisman MH, Lipton SA, Tong G, Descalzi G, Zhang D, Zhuo M, Zhang Z. Roles of KChIP1 in the regulation of GABA-mediated transmission and behavioral anxiety. Mol Brain. 2010 Aug 02; 3:23. PMID: 20678225; PMCID: PMC2927585.
    143. Ju WK, Kim KY, Duong-Polk KX, Lindsey JD, Ellisman MH, Weinreb RN. Increased optic atrophy type 1 expression protects retinal ganglion cells in a mouse model of glaucoma. Mol Vis. 2010 Jul 15; 16:1331-42. PMID: 20664796; PMCID: PMC2905637.
    144. De Jaco A, Lin MZ, Dubi N, Comoletti D, Miller MT, Camp S, Ellisman M, Butko MT, Tsien RY, Taylor P. Neuroligin trafficking deficiencies arising from mutations in the alpha/beta-hydrolase fold protein family. J Biol Chem. 2010 Sep 10; 285(37):28674-82. PMID: 20615874; PMCID: PMC2937894.
    145. Perkins GA, Ellisman MH. Mitochondrial configurations in peripheral nerve suggest differential ATP production. J Struct Biol. 2011 Jan; 173(1):117-27. PMID: 20600951; PMCID: PMC3078762.
    146. Kim CE, Perez A, Perkins G, Ellisman MH, Dauer WT. A molecular mechanism underlying the neural-specific defect in torsinA mutant mice. Proc Natl Acad Sci U S A. 2010 May 25; 107(21):9861-6. PMID: 20457914; PMCID: PMC2906867.
    147. Milazzo AC, Moldovan G, Lanman J, Jin L, Bouwer JC, Klienfelder S, Peltier ST, Ellisman MH, Kirkland AI, Xuong NH. Characterization of a direct detection device imaging camera for transmission electron microscopy. Ultramicroscopy. 2010 Jun; 110(7):744-7. PMID: 20382479; PMCID: PMC2923635.
    148. Lee JH, Budanov AV, Park EJ, Birse R, Kim TE, Perkins GA, Ocorr K, Ellisman MH, Bodmer R, Bier E, Karin M. Sestrin as a feedback inhibitor of TOR that prevents age-related pathologies. Science. 2010 Mar 05; 327(5970):1223-8. PMID: 20203043; PMCID: PMC2866632.
    149. Fitzpatrick K, Skasko M, Deerinck TJ, Crum J, Ellisman MH, Guatelli J. Direct restriction of virus release and incorporation of the interferon-induced protein BST-2 into HIV-1 particles. PLoS Pathog. 2010 Mar 05; 6(3):e1000701. PMID: 20221443; PMCID: PMC2832767.
    150. Shanks NF, Maruo T, Farina AN, Ellisman MH, Nakagawa T. Contribution of the global subunit structure and stargazin on the maturation of AMPA receptors. J Neurosci. 2010 Feb 17; 30(7):2728-40. PMID: 20164357; PMCID: PMC2842908.
    151. Bowman GR, Comolli LR, Gaietta GM, Fero M, Hong SH, Jones Y, Lee JH, Downing KH, Ellisman MH, McAdams HH, Shapiro L. Caulobacter PopZ forms a polar subdomain dictating sequential changes in pole composition and function. Mol Microbiol. 2010 Apr; 76(1):173-89. PMID: 20149103; PMCID: PMC2935252.
    152. Perkins GA, Tjong J, Brown JM, Poquiz PH, Scott RT, Kolson DR, Ellisman MH, Spirou GA. The micro-architecture of mitochondria at active zones: electron tomography reveals novel anchoring scaffolds and cristae structured for high-rate metabolism. J Neurosci. 2010 Jan 20; 30(3):1015-26. PMID: 20089910; PMCID: PMC2829299.
    153. West JB, Fu Z, Deerinck TJ, Mackey MR, Obayashi JT, Ellisman MH. Structure-function studies of blood and air capillaries in chicken lung using 3D electron microscopy. Respir Physiol Neurobiol. 2010 Feb 28; 170(2):202-9. PMID: 20038456; PMCID: PMC2821748.
    154. Ragsdale EJ, Ngo PT, Crum J, Ellisman MH, Baldwin JG. Comparative, three-dimensional anterior sensory reconstruction of Aphelenchus avenae (nematoda: Tylenchomorpha). J Comp Neurol. 2009 Dec 10; 517(5):616-32. PMID: 19824103.
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    155. Hauser J, Ellisman M, Steinau HU, Stefan E, Dudda M, Hauser M. Ultrasound enhanced endocytotic activity of human fibroblasts. Ultrasound Med Biol. 2009 Dec; 35(12):2084-92. PMID: 19828232.
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    157. Perkins G, Bossy-Wetzel E, Ellisman MH. New insights into mitochondrial structure during cell death. Exp Neurol. 2009 Aug; 218(2):183-92. PMID: 19464290; PMCID: PMC2712651.
    158. Hegedus B, Hughes FW, Garbow JR, Gianino S, Banerjee D, Kim K, Ellisman MH, Brantley MA, Gutmann DH. Optic nerve dysfunction in a mouse model of neurofibromatosis-1 optic glioma. J Neuropathol Exp Neurol. 2009 May; 68(5):542-51. PMID: 19525901; PMCID: PMC2746323.
    159. Hayashi T, Martone ME, Yu Z, Thor A, Doi M, Holst MJ, Ellisman MH, Hoshijima M. Three-dimensional electron microscopy reveals new details of membrane systems for Ca2+ signaling in the heart. J Cell Sci. 2009 Apr 01; 122(Pt 7):1005-13. PMID: 19295127; PMCID: PMC2720931.
    160. Garcia ML, Rao MV, Fujimoto J, Garcia VB, Shah SB, Crum J, Gotow T, Uchiyama Y, Ellisman M, Calcutt NA, Cleveland DW. Phosphorylation of highly conserved neurofilament medium KSP repeats is not required for myelin-dependent radial axonal growth. J Neurosci. 2009 Feb 04; 29(5):1277-84. PMID: 19193875; PMCID: PMC2782950.
    161. Shawkey MD, Saranathan V, Pálsdóttir H, Crum J, Ellisman MH, Auer M, Prum RO. Electron tomography, three-dimensional Fourier analysis and colour prediction of a three-dimensional amorphous biophotonic nanostructure. J R Soc Interface. 2009 Apr 06; 6 Suppl 2:S213-20. PMID: 19158016; PMCID: PMC2706473.
    162. Ju WK, Kim KY, Lindsey JD, Angert M, Patel A, Scott RT, Liu Q, Crowston JG, Ellisman MH, Perkins GA, Weinreb RN. Elevated hydrostatic pressure triggers release of OPA1 and cytochrome C, and induces apoptotic cell death in differentiated RGC-5 cells. Mol Vis. 2009; 15:120-34. PMID: 19169378; PMCID: PMC2629709.
    163. Bumbarger DJ, Wijeratne S, Carter C, Crum J, Ellisman MH, Baldwin JG. Three-dimensional reconstruction of the amphid sensilla in the microbial feeding nematode, Acrobeles complexus (Nematoda: Rhabditida). J Comp Neurol. 2009 Jan 10; 512(2):271-81. PMID: 19003904; PMCID: PMC2750866.
    164. Buccigrossi R, Ellisman M, Grethe J, Haselgrove C, Kennedy DN, Martone M, Preuss N, Reynolds K, Sullivan M, Turner J, Wagner K. The Neuroimaging Informatics Tools and Resources Clearinghouse (NITRC). AMIA Annu Symp Proc. 2008 Nov 06; 1000. PMID: 18999128.
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    165. Ju WK, Kim KY, Angert M, Duong-Polk KX, Lindsey JD, Ellisman MH, Weinreb RN. Memantine blocks mitochondrial OPA1 and cytochrome c release and subsequent apoptotic cell death in glaucomatous retina. Invest Ophthalmol Vis Sci. 2009 Feb; 50(2):707-16. PMID: 18936150; PMCID: PMC2678967.
    166. Ragsdale EJ, Crum J, Ellisman MH, Baldwin JG. Three-dimensional reconstruction of the stomatostylet and anterior epidermis in the nematode Aphelenchus avenae (Nematoda: Aphelenchidae) with implications for the evolution of plant parasitism. J Morphol. 2008 Oct; 269(10):1181-96. PMID: 18570305; PMCID: PMC2730191.
    167. Sen D, Deerinck TJ, Ellisman MH, Parker I, Cahalan MD. Quantum dots for tracking dendritic cells and priming an immune response in vitro and in vivo. PLoS One. 2008 Sep 29; 3(9):e3290. PMID: 18820727; PMCID: PMC2538605.
    168. Yu Z, Holst MJ, Hayashi T, Bajaj CL, Ellisman MH, McCammon JA, Hoshijima M. Three-dimensional geometric modeling of membrane-bound organelles in ventricular myocytes: bridging the gap between microscopic imaging and mathematical simulation. J Struct Biol. 2008 Dec; 164(3):304-13. PMID: 18835449; PMCID: PMC2790379.
    169. Yamaguchi R, Lartigue L, Perkins G, Scott RT, Dixit A, Kushnareva Y, Kuwana T, Ellisman MH, Newmeyer DD. Opa1-mediated cristae opening is Bax/Bak and BH3 dependent, required for apoptosis, and independent of Bak oligomerization. Mol Cell. 2008 Aug 22; 31(4):557-69. PMID: 18691924; PMCID: PMC2636708.
    170. Lopreore CL, Bartol TM, Coggan JS, Keller DX, Sosinsky GE, Ellisman MH, Sejnowski TJ. Computational modeling of three-dimensional electrodiffusion in biological systems: application to the node of Ranvier. Biophys J. 2008 Sep 15; 95(6):2624-35. PMID: 18556758; PMCID: PMC2527256.
    171. Ju WK, Kim KY, Lindsey JD, Angert M, Duong-Polk KX, Scott RT, Kim JJ, Kukhmazov I, Ellisman MH, Perkins GA, Weinreb RN. Intraocular pressure elevation induces mitochondrial fission and triggers OPA1 release in glaucomatous optic nerve. Invest Ophthalmol Vis Sci. 2008 Nov; 49(11):4903-11. PMID: 18469184; PMCID: PMC2688012.
    172. Capani F, Saraceno E, Boti VR, Aon-Bertolino L, Fernández JC, Gato F, Kruse MS, Krause MS, Giraldez L, Ellisman MH, Coirini H. A tridimensional view of the organization of actin filaments in the central nervous system by use of fluorescent photooxidation. Biocell. 2008 Apr; 32(1):1-8. PMID: 18669318.
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    173. Marko M, Ellisman M, Medalia O. The 4th International Conference on Electron Tomography. J Struct Biol. 2008 Mar; 161(3):219. PMID: 19255594.
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    174. Garduño E, Wong-Barnum M, Volkmann N, Ellisman MH. Segmentation of electron tomographic data sets using fuzzy set theory principles. J Struct Biol. 2008 Jun; 162(3):368-79. PMID: 18358741; PMCID: PMC2494597.
    175. Saini V, Martyshkin DV, Mirov SB, Perez A, Perkins G, Ellisman MH, Towner VD, Wu H, Pereboeva L, Borovjagin A, Curiel DT, Everts M. An adenoviral platform for selective self-assembly and targeted delivery of nanoparticles. Small. 2008 Feb; 4(2):262-9. PMID: 18200644.
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    176. Davalos D, Lee JK, Smith WB, Brinkman B, Ellisman MH, Zheng B, Akassoglou K. Stable in vivo imaging of densely populated glia, axons and blood vessels in the mouse spinal cord using two-photon microscopy. J Neurosci Methods. 2008 Mar 30; 169(1):1-7. PMID: 18192022; PMCID: PMC2647134.
    177. Ultanir SK, Kim JE, Hall BJ, Deerinck T, Ellisman M, Ghosh A. Regulation of spine morphology and spine density by NMDA receptor signaling in vivo. Proc Natl Acad Sci U S A. 2007 Dec 04; 104(49):19553-8. PMID: 18048342; PMCID: PMC2148327.
    178. Jin L, Milazzo AC, Kleinfelder S, Li S, Leblanc P, Duttweiler F, Bouwer JC, Peltier ST, Ellisman MH, Xuong NH. Applications of direct detection device in transmission electron microscopy. J Struct Biol. 2008 Mar; 161(3):352-8. PMID: 18054249; PMCID: PMC2359769.
    179. Perkins GA, Sosinsky GE, Ghassemzadeh S, Perez A, Jones Y, Ellisman MH. Electron tomographic analysis of cytoskeletal cross-bridges in the paranodal region of the node of Ranvier in peripheral nerves. J Struct Biol. 2008 Mar; 161(3):469-80. PMID: 18096402; PMCID: PMC2346545.
    180. Martone ME, Tran J, Wong WW, Sargis J, Fong L, Larson S, Lamont SP, Gupta A, Ellisman MH. The cell centered database project: an update on building community resources for managing and sharing 3D imaging data. J Struct Biol. 2008 Mar; 161(3):220-31. PMID: 18054501; PMCID: PMC2367257.
    181. Lanman J, Crum J, Deerinck TJ, Gaietta GM, Schneemann A, Sosinsky GE, Ellisman MH, Johnson JE. Visualizing flock house virus infection in Drosophila cells with correlated fluorescence and electron microscopy. J Struct Biol. 2008 Mar; 161(3):439-46. PMID: 17998167; PMCID: PMC2408891.
    182. Sosinsky GE, Crum J, Jones YZ, Lanman J, Smarr B, Terada M, Martone ME, Deerinck TJ, Johnson JE, Ellisman MH. The combination of chemical fixation procedures with high pressure freezing and freeze substitution preserves highly labile tissue ultrastructure for electron tomography applications. J Struct Biol. 2008 Mar; 161(3):359-71. PMID: 17962040; PMCID: PMC2459253.
    183. Kopek BG, Perkins G, Miller DJ, Ellisman MH, Ahlquist P. Three-dimensional analysis of a viral RNA replication complex reveals a virus-induced mini-organelle. PLoS Biol. 2007 Sep; 5(9):e220. PMID: 17696647; PMCID: PMC1945040.
    184. Martin BR, Deerinck TJ, Ellisman MH, Taylor SS, Tsien RY. Isoform-specific PKA dynamics revealed by dye-triggered aggregation and DAKAP1alpha-mediated localization in living cells. Chem Biol. 2007 Sep; 14(9):1031-42. PMID: 17884635.
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    185. Sun MG, Williams J, Munoz-Pinedo C, Perkins GA, Brown JM, Ellisman MH, Green DR, Frey TG. Correlated three-dimensional light and electron microscopy reveals transformation of mitochondria during apoptosis. Nat Cell Biol. 2007 Sep; 9(9):1057-65. PMID: 17721514.
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    186. Bumbarger DJ, Crum J, Ellisman MH, Baldwin JG. Three-dimensional fine structural reconstruction of the nose sensory structures of Acrobeles complexus compared to Caenorhabditis elegans (Nematoda: Rhabditida). J Morphol. 2007 Aug; 268(8):649-63. PMID: 17514723.
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    187. Chang SY, Zagha E, Kwon ES, Ozaita A, Bobik M, Martone ME, Ellisman MH, Heintz N, Rudy B. Distribution of Kv3.3 potassium channel subunits in distinct neuronal populations of mouse brain. J Comp Neurol. 2007 Jun 20; 502(6):953-72. PMID: 17444489.
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    188. Johnson JE, Perkins GA, Giddabasappa A, Chaney S, Xiao W, White AD, Brown JM, Waggoner J, Ellisman MH, Fox DA. Spatiotemporal regulation of ATP and Ca2+ dynamics in vertebrate rod and cone ribbon synapses. Mol Vis. 2007 Jun 15; 13:887-919. PMID: 17653034; PMCID: PMC2774461.
    189. Toni N, Teng EM, Bushong EA, Aimone JB, Zhao C, Consiglio A, van Praag H, Martone ME, Ellisman MH, Gage FH. Synapse formation on neurons born in the adult hippocampus. Nat Neurosci. 2007 Jun; 10(6):727-34. PMID: 17486101.
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    190. Bielas SL, Serneo FF, Chechlacz M, Deerinck TJ, Perkins GA, Allen PB, Ellisman MH, Gleeson JG. Spinophilin facilitates dephosphorylation of doublecortin by PP1 to mediate microtubule bundling at the axonal wrist. Cell. 2007 May 04; 129(3):579-91. PMID: 17482550; PMCID: PMC1920181.
    191. Ju WK, Liu Q, Kim KY, Crowston JG, Lindsey JD, Agarwal N, Ellisman MH, Perkins GA, Weinreb RN. Elevated hydrostatic pressure triggers mitochondrial fission and decreases cellular ATP in differentiated RGC-5 cells. Invest Ophthalmol Vis Sci. 2007 May; 48(5):2145-51. PMID: 17460273.
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    192. Pezzoli K, Tukey R, Sarabia H, Zaslavsky I, Miranda ML, Suk WA, Lin A, Ellisman M. The NIEHS Environmental Health Sciences Data Resource Portal: placing advanced technologies in service to vulnerable communities. Environ Health Perspect. 2007 Apr; 115(4):564-71. PMID: 17450225; PMCID: PMC1852670.
    193. Bencheikh-Latmani R, Obraztsova A, Mackey MR, Ellisman MH, Tebo BM. Toxicity of Cr(lll) to Shewanella sp. strain MR-4 during Cr(VI) reduction. Environ Sci Technol. 2007 Jan 01; 41(1):214-20. PMID: 17265950.
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    194. Xuong NH, Jin L, Kleinfelder S, Li S, Leblanc P, Duttweiler F, Bouwer JC, Peltier ST, Milazzo AC, Ellisman M. Future directions for camera systems in electron microscopy. Methods Cell Biol. 2007; 79:721-39. PMID: 17327181.
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    195. Bouwer JC, Mackey MR, Lawrence A, Deerinck TJ, Jones YZ, Terada M, Martone ME, Peltier ST, Ellisman MH. The application of energy-filtered electron microscopy to tomography of thick, selectively stained biological samples. Methods Cell Biol. 2007; 79:643-60. PMID: 17327179.
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    196. Sosinsky GE, Giepmans BN, Deerinck TJ, Gaietta GM, Ellisman MH. Markers for correlated light and electron microscopy. Methods Cell Biol. 2007; 79:575-91. PMID: 17327175.
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    197. Deerinck TJ, Giepmans BN, Smarr BL, Martone ME, Ellisman MH. Light and electron microscopic localization of multiple proteins using quantum dots. Methods Mol Biol. 2007; 374:43-53. PMID: 17237528.
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    198. Gaietta GM, Giepmans BN, Deerinck TJ, Smith WB, Ngan L, Llopis J, Adams SR, Tsien RY, Ellisman MH. Golgi twins in late mitosis revealed by genetically encoded tags for live cell imaging and correlated electron microscopy. Proc Natl Acad Sci U S A. 2006 Nov 21; 103(47):17777-82. PMID: 17101980; PMCID: PMC1635977.
    199. Wilhelmsson U, Bushong EA, Price DL, Smarr BL, Phung V, Terada M, Ellisman MH, Pekny M. Redefining the concept of reactive astrocytes as cells that remain within their unique domains upon reaction to injury. Proc Natl Acad Sci U S A. 2006 Nov 14; 103(46):17513-8. PMID: 17090684; PMCID: PMC1859960.
    200. Bumbarger DJ, Crum J, Ellisman MH, Baldwin JG. Three-dimensional reconstruction of the nose epidermal cells in the microbial feeding nematode, Acrobeles complexus (Nematoda: Rhabditida). J Morphol. 2006 Nov; 267(11):1257-72. PMID: 16710857.
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    201. Yuan H, Gerencser AA, Liot G, Lipton SA, Ellisman M, Perkins GA, Bossy-Wetzel E. Mitochondrial fission is an upstream and required event for bax foci formation in response to nitric oxide in cortical neurons. Cell Death Differ. 2007 Mar; 14(3):462-71. PMID: 17053808.
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    202. Barsoum MJ, Yuan H, Gerencser AA, Liot G, Kushnareva Y, Gräber S, Kovacs I, Lee WD, Waggoner J, Cui J, White AD, Bossy B, Martinou JC, Youle RJ, Lipton SA, Ellisman MH, Perkins GA, Bossy-Wetzel E. Nitric oxide-induced mitochondrial fission is regulated by dynamin-related GTPases in neurons. EMBO J. 2006 Aug 23; 25(16):3900-11. PMID: 16874299; PMCID: PMC1553198.
    203. Giepmans BN, Adams SR, Ellisman MH, Tsien RY. The fluorescent toolbox for assessing protein location and function. Science. 2006 Apr 14; 312(5771):217-24. PMID: 16614209.
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    204. Lawrence A, Bouwer JC, Perkins G, Ellisman MH. Transform-based backprojection for volume reconstruction of large format electron microscope tilt series. J Struct Biol. 2006 May; 154(2):144-67. PMID: 16542854.
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    205. De Jaco A, Comoletti D, Kovarik Z, Gaietta G, Radic Z, Lockridge O, Ellisman MH, Taylor P. A mutation linked with autism reveals a common mechanism of endoplasmic reticulum retention for the alpha,beta-hydrolase fold protein family. J Biol Chem. 2006 Apr 07; 281(14):9667-76. PMID: 16434405.
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    206. Frey TG, Perkins GA, Ellisman MH. Electron tomography of membrane-bound cellular organelles. Annu Rev Biophys Biomol Struct. 2006; 35:199-224. PMID: 16689634.
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    207. Price DL, Chow SK, Maclean NA, Hakozaki H, Peltier S, Martone ME, Ellisman MH. High-resolution large-scale mosaic imaging using multiphoton microscopy to characterize transgenic mouse models of human neurological disorders. Neuroinformatics. 2006; 4(1):65-80. PMID: 16595859.
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    208. De Jaco A, Kovarik Z, Comoletti D, Jennings LL, Gaietta G, Ellisman MH, Taylor P. A single mutation near the C-terminus in alpha/beta hydrolase fold protein family causes a defect in protein processing. Chem Biol Interact. 2005 Dec 15; 157-158:371-2. PMID: 16429495.
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    209. Ouyang Y, Wong M, Capani F, Rensing N, Lee CS, Liu Q, Neusch C, Martone ME, Wu JY, Yamada K, Ellisman MH, Choi DW. Transient decrease in F-actin may be necessary for translocation of proteins into dendritic spines. Eur J Neurosci. 2005 Dec; 22(12):2995-3005. PMID: 16367766; PMCID: PMC2286827.
    210. Zhang SL, Yu Y, Roos J, Kozak JA, Deerinck TJ, Ellisman MH, Stauderman KA, Cahalan MD. STIM1 is a Ca2+ sensor that activates CRAC channels and migrates from the Ca2+ store to the plasma membrane. Nature. 2005 Oct 06; 437(7060):902-5. PMID: 16208375; PMCID: PMC1618826.
    211. Giepmans BN, Deerinck TJ, Smarr BL, Jones YZ, Ellisman MH. Correlated light and electron microscopic imaging of multiple endogenous proteins using Quantum dots. Nat Methods. 2005 Oct; 2(10):743-9. PMID: 16179920.
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    212. Akiyama T, Teranishi Y, Nozaki K, Kato S, Shimojo S, Peltier ST, Lin A, Molina T, Yang G, Lee D, Ellisman M, Naito S, Koike A, Matsumoto S, Yoshida K, Mori H. Scientific Grid activities and PKI deployment in the Cybermedia Center, Osaka University. J Clin Monit Comput. 2005 Oct; 19(4-5):279-94. PMID: 16328943.
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    213. Coggan JS, Bartol TM, Esquenazi E, Stiles JR, Lamont S, Martone ME, Berg DK, Ellisman MH, Sejnowski TJ. Evidence for ectopic neurotransmission at a neuronal synapse. Science. 2005 Jul 15; 309(5733):446-51. PMID: 16020730; PMCID: PMC2915764.
    214. Weis BK, Balshaw D, Barr JR, Brown D, Ellisman M, Lioy P, Omenn G, Potter JD, Smith MT, Sohn L, Suk WA, Sumner S, Swenberg J, Walt DR, Watkins S, Thompson C, Wilson SH. Personalized exposure assessment: promising approaches for human environmental health research. Environ Health Perspect. 2005 Jul; 113(7):840-8. PMID: 16002370; PMCID: PMC1257643.
    215. Milazzo AC, Leblanc P, Duttweiler F, Jin L, Bouwer JC, Peltier S, Ellisman M, Bieser F, Matis HS, Wieman H, Denes P, Kleinfelder S, Xuong NH. Active pixel sensor array as a detector for electron microscopy. Ultramicroscopy. 2005 Sep; 104(2):152-9. PMID: 15890445.
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    216. Hoffmann C, Gaietta G, Bünemann M, Adams SR, Oberdorff-Maass S, Behr B, Vilardaga JP, Tsien RY, Ellisman MH, Lohse MJ. A FlAsH-based FRET approach to determine G protein-coupled receptor activation in living cells. Nat Methods. 2005 Mar; 2(3):171-6. PMID: 15782185.
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    217. Grethe JS, Baru C, Gupta A, James M, Ludaescher B, Martone ME, Papadopoulos PM, Peltier ST, Rajasekar A, Santini S, Zaslavsky IN, Ellisman MH. Biomedical informatics research network: building a national collaboratory to hasten the derivation of new understanding and treatment of disease. Stud Health Technol Inform. 2005; 112:100-9. PMID: 15923720.
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    218. Sosinsky GE, Deerinck TJ, Greco R, Buitenhuys CH, Bartol TM, Ellisman MH. Development of a model for microphysiological simulations: small nodes of ranvier from peripheral nerves of mice reconstructed by electron tomography. Neuroinformatics. 2005; 3(2):133-62. PMID: 15988042.
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    219. Bouwer JC, Mackey MR, Lawrence A, Deerinck TJ, Jones YZ, Terada M, Martone ME, Peltier S, Ellisman MH. Automated most-probable loss tomography of thick selectively stained biological specimens with quantitative measurement of resolution improvement. J Struct Biol. 2004 Dec; 148(3):297-306. PMID: 15522778.
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    220. Bobik M, Ellisman MH, Rudy B, Martone ME. Potassium channel subunit Kv3.2 and the water channel aquaporin-4 are selectively localized to cerebellar pinceau. Brain Res. 2004 Nov 12; 1026(2):168-78. PMID: 15488478.
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    221. Wiseman PW, Brown CM, Webb DJ, Hebert B, Johnson NL, Squier JA, Ellisman MH, Horwitz AF. Spatial mapping of integrin interactions and dynamics during cell migration by image correlation microscopy. J Cell Sci. 2004 Nov 01; 117(Pt 23):5521-34. PMID: 15479718.
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    222. Bubulya PA, Prasanth KV, Deerinck TJ, Gerlich D, Beaudouin J, Ellisman MH, Ellenberg J, Spector DL. Hypophosphorylated SR splicing factors transiently localize around active nucleolar organizing regions in telophase daughter nuclei. J Cell Biol. 2004 Oct 11; 167(1):51-63. PMID: 15479736; PMCID: PMC2172523.
    223. Perkins GA, Ellisman MH, Fox DA. The structure-function correlates of mammalian rod and cone photoreceptor mitochondria: observations and unanswered questions. Mitochondrion. 2004 Sep; 4(5-6):695-703. PMID: 16120425.
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    224. Ricci JE, Muñoz-Pinedo C, Fitzgerald P, Bailly-Maitre B, Perkins GA, Yadava N, Scheffler IE, Ellisman MH, Green DR. Disruption of mitochondrial function during apoptosis is mediated by caspase cleavage of the p75 subunit of complex I of the electron transport chain. Cell. 2004 Jun 11; 117(6):773-86. PMID: 15186778.
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    225. Slikker W, Pogge A, Walker R, Chatziiannou A, Charles C, Ellisman M. Neuroimaging: strategies to illuminate environment-disease linkages. Session II. Summary and research needs. Neurotoxicology. 2004 Jun; 25(4):501-2. PMID: 15183002.
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    226. Wilhelmsson U, Li L, Pekna M, Berthold CH, Blom S, Eliasson C, Renner O, Bushong E, Ellisman M, Morgan TE, Pekny M. Absence of glial fibrillary acidic protein and vimentin prevents hypertrophy of astrocytic processes and improves post-traumatic regeneration. J Neurosci. 2004 May 26; 24(21):5016-21. PMID: 15163694.
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    227. Comoletti D, De Jaco A, Jennings LL, Flynn RE, Gaietta G, Tsigelny I, Ellisman MH, Taylor P. The Arg451Cys-neuroligin-3 mutation associated with autism reveals a defect in protein processing. J Neurosci. 2004 May 19; 24(20):4889-93. PMID: 15152050.
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    228. Hama K, Arii T, Katayama E, Marton M, Ellisman MH. Tri-dimensional morphometric analysis of astrocytic processes with high voltage electron microscopy of thick Golgi preparations. J Neurocytol. 2004 May; 33(3):277-85. PMID: 15475683.
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    229. Martone ME, Gupta A, Ellisman MH. E-neuroscience: challenges and triumphs in integrating distributed data from molecules to brains. Nat Neurosci. 2004 May; 7(5):467-72. PMID: 15114360.
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    230. Bushong EA, Martone ME, Ellisman MH. Maturation of astrocyte morphology and the establishment of astrocyte domains during postnatal hippocampal development. Int J Dev Neurosci. 2004 Apr; 22(2):73-86. PMID: 15036382.
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    231. Ju W, Morishita W, Tsui J, Gaietta G, Deerinck TJ, Adams SR, Garner CC, Tsien RY, Ellisman MH, Malenka RC. Activity-dependent regulation of dendritic synthesis and trafficking of AMPA receptors. Nat Neurosci. 2004 Mar; 7(3):244-53. PMID: 14770185.
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    232. Bossy-Wetzel E, Talantova MV, Lee WD, Schölzke MN, Harrop A, Mathews E, Götz T, Han J, Ellisman MH, Perkins GA, Lipton SA. Crosstalk between nitric oxide and zinc pathways to neuronal cell death involving mitochondrial dysfunction and p38-activated K+ channels. Neuron. 2004 Feb 05; 41(3):351-65. PMID: 14766175.
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    233. Casanova H, Berman F, Bartol T, Gokcay E, Sejnowski T, Birnbaum A, Dongarra J, Miller M, Ellisman M, Faerman M, Obertelli G, Wolski R, Pomerantz S, Stiles J. THE VIRTUAL INSTRUMENT: SUPPORT FOR GRID-ENABLED MCELL SIMULATIONS. Int J High Perform Comput Appl. 2004 Feb 01; 18(1):3-17. PMID: 20689618.
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    234. Garcia ML, Lobsiger CS, Shah SB, Deerinck TJ, Crum J, Young D, Ward CM, Crawford TO, Gotow T, Uchiyama Y, Ellisman MH, Calcutt NA, Cleveland DW. NF-M is an essential target for the myelin-directed "outside-in" signaling cascade that mediates radial axonal growth. J Cell Biol. 2003 Dec 08; 163(5):1011-20. PMID: 14662745; PMCID: PMC2173620.
    235. Fomina AF, Deerinck TJ, Ellisman MH, Cahalan MD. Regulation of membrane trafficking and subcellular organization of endocytic compartments revealed with FM1-43 in resting and activated human T cells. Exp Cell Res. 2003 Nov 15; 291(1):150-66. PMID: 14597416; PMCID: PMC2749753.
    236. Mironov AA, Mironov AA, Beznoussenko GV, Trucco A, Lupetti P, Smith JD, Geerts WJ, Koster AJ, Burger KN, Martone ME, Deerinck TJ, Ellisman MH, Luini A. ER-to-Golgi carriers arise through direct en bloc protrusion and multistage maturation of specialized ER exit domains. Dev Cell. 2003 Oct; 5(4):583-94. PMID: 14536060.
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    237. Middleton SS, Latmani RB, Mackey MR, Ellisman MH, Tebo BM, Criddle CS. Cometabolism of Cr(VI) by Shewanella oneidensis MR-1 produces cell-associated reduced chromium and inhibits growth. Biotechnol Bioeng. 2003 Sep 20; 83(6):627-37. PMID: 12889027.
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    238. Balboa MA, Shirai Y, Gaietta G, Ellisman MH, Balsinde J, Dennis EA. Localization of group V phospholipase A2 in caveolin-enriched granules in activated P388D1 macrophage-like cells. J Biol Chem. 2003 Nov 28; 278(48):48059-65. PMID: 12963740.
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    239. Viirre E, Ellisman M. Vertigo in virtual reality with haptics: case report. Cyberpsychol Behav. 2003 Aug; 6(4):429-31. PMID: 14511456.
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    240. Bushong EA, Martone ME, Ellisman MH. Examination of the relationship between astrocyte morphology and laminar boundaries in the molecular layer of adult dentate gyrus. J Comp Neurol. 2003 Jul 21; 462(2):241-51. PMID: 12794746.
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    241. Sosinsky GE, Gaietta GM, Hand G, Deerinck TJ, Han A, Mackey M, Adams SR, Bouwer J, Tsien RY, Ellisman MH. Tetracysteine genetic tags complexed with biarsenical ligands as a tool for investigating gap junction structure and dynamics. Cell Commun Adhes. 2003 Jul-Dec; 10(4-6):181-6. PMID: 14681013.
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    242. Gaietta GM, Yoder EJ, Deerinck T, Kinder K, Hanono A, Han A, Wu C, Ellisman MH. 5-HT2a receptors in rat sciatic nerves and Schwann cell cultures. J Neurocytol. 2003 May; 32(4):373-80. PMID: 14724380.
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    243. Chang L, Jones Y, Ellisman MH, Goldstein LS, Karin M. JNK1 is required for maintenance of neuronal microtubules and controls phosphorylation of microtubule-associated proteins. Dev Cell. 2003 Apr; 4(4):521-33. PMID: 12689591.
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    244. Perkins GA, Ellisman MH, Fox DA. Three-dimensional analysis of mouse rod and cone mitochondrial cristae architecture: bioenergetic and functional implications. Mol Vis. 2003 Mar 11; 9:60-73. PMID: 12632036.
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    245. He L, Perkins GA, Poblenz AT, Harris JB, Hung M, Ellisman MH, Fox DA. Bcl-xL overexpression blocks bax-mediated mitochondrial contact site formation and apoptosis in rod photoreceptors of lead-exposed mice. Proc Natl Acad Sci U S A. 2003 Feb 04; 100(3):1022-7. PMID: 12540825; PMCID: PMC298719.
    246. Martone ME, Zhang S, Gupta A, Qian X, He H, Price DL, Wong M, Santini S, Ellisman MH. The cell-centered database: a database for multiscale structural and protein localization data from light and electron microscopy. Neuroinformatics. 2003; 1(4):379-95. PMID: 15043222.
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    247. Price DL, Ludwig JW, Mi H, Schwarz TL, Ellisman MH. Distribution of rSlo Ca2+-activated K+ channels in rat astrocyte perivascular endfeet. Brain Res. 2002 Nov 29; 956(2):183-93. PMID: 12445685.
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    248. Lenzi D, Crum J, Ellisman MH, Roberts WM. Depolarization redistributes synaptic membrane and creates a gradient of vesicles on the synaptic body at a ribbon synapse. Neuron. 2002 Nov 14; 36(4):649-59. PMID: 12441054.
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    249. Kuwana T, Mackey MR, Perkins G, Ellisman MH, Latterich M, Schneiter R, Green DR, Newmeyer DD. Bid, Bax, and lipids cooperate to form supramolecular openings in the outer mitochondrial membrane. Cell. 2002 Nov 01; 111(3):331-42. PMID: 12419244.
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    250. Gustafsson JS, Birinyi A, Crum J, Ellisman M, Brodin L, Shupliakov O. Ultrastructural organization of lamprey reticulospinal synapses in three dimensions. J Comp Neurol. 2002 Aug 19; 450(2):167-82. PMID: 12124761.
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    251. Gaietta G, Deerinck TJ, Adams SR, Bouwer J, Tour O, Laird DW, Sosinsky GE, Tsien RY, Ellisman MH. Multicolor and electron microscopic imaging of connexin trafficking. Science. 2002 Apr 19; 296(5567):503-7. PMID: 11964472.
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    252. Fernández JJ, Lawrence AF, Roca J, García I, Ellisman MH, Carazo JM. High-performance electron tomography of complex biological specimens. J Struct Biol. 2002 Apr-May; 138(1-2):6-20. PMID: 12160697.
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    253. Martone ME, Gupta A, Wong M, Qian X, Sosinsky G, Ludäscher B, Ellisman MH. A cell-centered database for electron tomographic data. J Struct Biol. 2002 Apr-May; 138(1-2):145-55. PMID: 12160711.
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    254. Shoop RD, Esquenazi E, Yamada N, Ellisman MH, Berg DK. Ultrastructure of a somatic spine mat for nicotinic signaling in neurons. J Neurosci. 2002 Feb 01; 22(3):748-56. PMID: 11826104.
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    255. Xia B, Hoyte K, Kammesheidt A, Deerinck T, Ellisman M, Martin PT. Overexpression of the CT GalNAc transferase in skeletal muscle alters myofiber growth, neuromuscular structure, and laminin expression. Dev Biol. 2002 Feb 01; 242(1):58-73. PMID: 11795940.
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    256. Bushong EA, Martone ME, Jones YZ, Ellisman MH. Protoplasmic astrocytes in CA1 stratum radiatum occupy separate anatomical domains. J Neurosci. 2002 Jan 01; 22(1):183-92. PMID: 11756501.
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    257. Keller SH, Lindstrom J, Ellisman M, Taylor P. Adjacent basic amino acid residues recognized by the COP I complex and ubiquitination govern endoplasmic reticulum to cell surface trafficking of the nicotinic acetylcholine receptor alpha-Subunit. J Biol Chem. 2001 May 25; 276(21):18384-91. PMID: 11279119.
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    258. Cirulli V, Beattie GM, Klier G, Ellisman M, Ricordi C, Quaranta V, Frasier F, Ishii JK, Hayek A, Salomon DR. Expression and function of alpha(v)beta(3) and alpha(v)beta(5) integrins in the developing pancreas: roles in the adhesion and migration of putative endocrine progenitor cells. J Cell Biol. 2000 Sep 18; 150(6):1445-60. PMID: 10995448; PMCID: PMC2150716.
    259. Lin W, Sanchez HB, Deerinck T, Morris JK, Ellisman M, Lee KF. Aberrant development of motor axons and neuromuscular synapses in erbB2-deficient mice. Proc Natl Acad Sci U S A. 2000 Feb 01; 97(3):1299-304. PMID: 10655525; PMCID: PMC15603.
    260. Li ZW, Chu W, Hu Y, Delhase M, Deerinck T, Ellisman M, Johnson R, Karin M. The IKKbeta subunit of IkappaB kinase (IKK) is essential for nuclear factor kappaB activation and prevention of apoptosis. J Exp Med. 1999 Jun 07; 189(11):1839-45. PMID: 10359587; PMCID: PMC2193082.
    261. Hu Y, Baud V, Delhase M, Zhang P, Deerinck T, Ellisman M, Johnson R, Karin M. Abnormal morphogenesis but intact IKK activation in mice lacking the IKKalpha subunit of IkappaB kinase. Science. 1999 Apr 09; 284(5412):316-20. PMID: 10195896.
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    262. Cirulli V, Crisa L, Beattie GM, Mally MI, Lopez AD, Fannon A, Ptasznik A, Inverardi L, Ricordi C, Deerinck T, Ellisman M, Reisfeld RA, Hayek A. KSA antigen Ep-CAM mediates cell-cell adhesion of pancreatic epithelial cells: morphoregulatory roles in pancreatic islet development. J Cell Biol. 1998 Mar 23; 140(6):1519-34. PMID: 9508783; PMCID: PMC2132663.
    263. Sekirnjak C, Martone ME, Weiser M, Deerinck T, Bueno E, Rudy B, Ellisman M. Subcellular localization of the K+ channel subunit Kv3.1b in selected rat CNS neurons. Brain Res. 1997 Aug 22; 766(1-2):173-87. PMID: 9359601.
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    264. Perkins G, Renken C, Martone ME, Young SJ, Ellisman M, Frey T. Electron tomography of neuronal mitochondria: three-dimensional structure and organization of cristae and membrane contacts. J Struct Biol. 1997 Aug; 119(3):260-72. PMID: 9245766.
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    265. Simon FR, Leffert HL, Ellisman M, Iwahashi M, Deerinck T, Fortune J, Morales D, Dahl R, Sutherland E. Hepatic Na(+)-K(+)-ATPase enzyme activity correlates with polarized beta-subunit expression. Am J Physiol. 1995 Jul; 269(1 Pt 1):C69-84. PMID: 7631761.
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    266. Weiser M, Bueno E, Sekirnjak C, Martone ME, Baker H, Hillman D, Chen S, Thornhill W, Ellisman M, Rudy B. The potassium channel subunit KV3.1b is localized to somatic and axonal membranes of specific populations of CNS neurons. J Neurosci. 1995 Jun; 15(6):4298-314. PMID: 7790912.
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    267. Tobias ML, Kelley DB, Ellisman M. A sex difference in synaptic efficacy at the laryngeal neuromuscular junction of Xenopus laevis. J Neurosci. 1995 Mar; 15(3 Pt 1):1660-8. PMID: 7891126; PMCID: PMC3493209.
    268. Masliah E, Mallory M, Deerinck T, DeTeresa R, Lamont S, Miller A, Terry RD, Carragher B, Ellisman M. Re-evaluation of the structural organization of neuritic plaques in Alzheimer's disease. J Neuropathol Exp Neurol. 1993 Nov; 52(6):619-32. PMID: 8229081.
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    269. Takizawa PA, Yucel JK, Veit B, Faulkner DJ, Deerinck T, Soto G, Ellisman M, Malhotra V. Complete vesiculation of Golgi membranes and inhibition of protein transport by a novel sea sponge metabolite, ilimaquinone. Cell. 1993 Jun 18; 73(6):1079-90. PMID: 8513494.
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    270. Masliah E, Ellisman M, Carragher B, Mallory M, Young S, Hansen L, DeTeresa R, Terry RD. Three-dimensional analysis of the relationship between synaptic pathology and neuropil threads in Alzheimer disease. J Neuropathol Exp Neurol. 1992 Jul; 51(4):404-14. PMID: 1619440.
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    271. Dollé P, Castrillo JL, Theill LE, Deerinck T, Ellisman M, Karin M. Expression of GHF-1 protein in mouse pituitaries correlates both temporally and spatially with the onset of growth hormone gene activity. Cell. 1990 Mar 09; 60(5):809-20. PMID: 1690079.
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    272. Bodner M, Castrillo JL, Theill LE, Deerinck T, Ellisman M, Karin M. The pituitary-specific transcription factor GHF-1 is a homeobox-containing protein. Cell. 1988 Nov 04; 55(3):505-18. PMID: 2902927.
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    273. Anholt R, Fredkin DR, Deerinck T, Ellisman M, Montal M, Lindstrom J. Incorporation of acetylcholine receptors into liposomes. Vesicle structure and acetylcholine receptor function. J Biol Chem. 1982 Jun 25; 257(12):7122-34. PMID: 7085620.
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