Mark Ellisman

Title(s)Professor, Neurosciences
SchoolVc-health Sciences-schools
Address9500 Gilman Drive #
La Jolla CA 92093
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    Collapse Research 
    Collapse Research Activities and Funding
    Reversing Microglial Inflammarafts and Mitochondrial Dysfunction in Alzheimer's Disease
    NIH/NIA R01 AG081037Dec 1, 2022 - Nov 30, 2027
    Role: Co-PI MPI award
    Description: New studies may suggest new therapeutic approaches to treatment of Alzheimer's disease
    In vivo imaging of mitochondria structure and function in therapy resistant lung tumors
    NIH/NCI R01 CA267721Jul 31, 2022 - Jun 30, 2027
    Role: Co-Investigator
    Description: Under this subcontract NCMIR staff carry out correlated microscopy of lung tumor samples first imaged using newly developed PET ligands which target mitochondria at UCLA followed by x-ray and 3D EM.
    Scalable electron tomography for connectomics
    NIH/NIMH RF 1MH129261Jul 1, 2022 - Jul 31, 2025
    Role: Co-PI (Dual PI - MPI award)
    Description: The goal of this proposal is to understand the organizational principles and connectivity of cell types in the cerebellum.
    Effect of Methadone on the Developmental Properties of Human Brain Organoids
    NIH/NIDA R01 DA053372May 1, 2022 - Feb 28, 2027
    Role: Co-Investigator
    Description: The goals of this project are to study the effect of opioids, namely methadone, on the formation and development of the human brain in the fetus during pregnancy when pregnant women are using or abusing methadone and to understand the mechanisms by which deleterious effects happen as a result of methadone use/abuse in order to counter them and mitigate the impairment induced by opioids on fetal brain integrity.
    National Center for Microscopy and Imaging Research: A BRAIN Technology Integration and Dissemination Resource
    NIH U24NS120055Feb 1, 2021 - Dec 31, 2025
    Role: Principal Investigator
    Circadian Structural Plasticity in Central Pacemakers
    NIH R01NS108934Sep 30, 2020 - Jun 30, 2025
    Role: Co-Principal Investigator
    The complex interaction between Alzheimer drivers and aging
    NIH/NIA R01 AG062479Sep 1, 2020 - Aug 31, 2024
    Role: Co-Investigator
    Description: This research aims to differentiate aging from Alzheimer disease (AD) processes by analyzing brains housed at the University of Antioquia, Medellin Colombia derived from patients with early onset AD due to the E280A mutation in PSEN1. A detailed analysis will be conducted to investigate mechanisms that lead to early onset genetic AD including inflammatory features, damage of the vasculature and impairments of exchange between the nucleus and the cytoplasm at the cellular level.
    Advancing Multi-Color EM via Direct Detector-enabled 4D-STEM
    NIH R01GM138780Sep 1, 2020 - Aug 31, 2024
    Role: Principal Investigator
    NeuroNex2: Enabling Indentification and Impact of Synaptic Weight in Functional Networks
    NSF NSF 2014862Aug 1, 2020 - Jul 31, 2025
    Role: Co-Investigator - I am one of 4 subgroup leads
    Description: This NeuroNex2 Network assembles world experts to study synapses from molecules to behavior, to answer this fundamental and ambitious question: What constitutes synaptic weight, and what role does it play in shaping neural circuits? Synaptic weight is hypothesized to involve the differential composition and co-occurrence of key proteins and subcellular resources.
    The National Center for Microscopy and Imaging Research, a Community-wide Scientific Resource
    NIH R24GM137200May 1, 2020 - Apr 30, 2023
    Role: Principal Investigator
    Transcriptional control of synaptic plasticity by class IIa HDACs
    NIH NINDS R01 NS087026Apr 1, 2020 - Mar 31, 2025
    Role: Co-I
    Description: The goal of this project is to elucidate the molecular mechanisms of experience-dependent plasticity of neural circuits essential for learning and memory.
    3D Reconstruction and Analysis of Alzheimer's Patient Biopsy Samples to Map and Quantify Hallmarks of Pathogenesis and Vulnerability
    NIH R01AG065549Mar 1, 2020 - Dec 31, 2024
    Role: Principal Investigator
    Fibrinogen and vascular cognitive impairment: mechanisms, imaging, therapeutics
    NIH/NIA R01AG064926Aug 1, 2019 - Apr 30, 2024
    Role: Co-Principal Investigator
    Fibrinogen and vascular cognitive impairment: mechanisms, imaging, therapeutics
    NIH RF1AG064926Aug 1, 2019 - Mar 31, 2024
    Role: Co-Principal Investigator
    The Nanoscale Connectome of the Cochlear Nucleus
    NIH R01DC015901Apr 1, 2019 - Mar 31, 2024
    Role: Co-Principal Investigator
    From microscale structure to population coding of normal and learned behavior
    NIH R01NS104911Sep 25, 2017 - Jul 31, 2022
    Role: Co-Principal Investigator
    NIH S10OD021784Apr 1, 2017 - Mar 31, 2018
    Role: Principal Investigator
    Imaging local and global chromatin structure as a 3D continuum within the nucleus
    NIH U01DA047731Sep 30, 2015 - Jun 30, 2021
    Role: Co-Principal Investigator
    Imaging local and global chromatin structure as a 3D continuum within the nucleus
    NIH U01EB021247Sep 30, 2015 - Jun 30, 2020
    Role: Principal Investigator
    CRCNS: Deciphering the Dynamical Multi-Scale Structure-Function Relation of Dendritic Spines
    NIH R01DA038896Jul 1, 2014 - Jun 30, 2021
    Role: Principal Investigator
    Transcellular Degradation of Mitochondria in the Central Nervous System
    NIH R01EY022680Sep 1, 2012 - Jun 30, 2016
    Role: Principal Investigator
    NIH R01NS075314May 1, 2011 - Apr 30, 2016
    Role: Principal Investigator
    NIH S10RR027385Dec 24, 2009 - Dec 23, 2011
    Role: Principal Investigator
    New Probe and Methods for Correlated LM & EM
    NIH R01GM086197Sep 30, 2008 - Apr 30, 2021
    Role: Co-Principal Investigator
    Support of and Extensions to the Cell Image Library
    NIH R01GM082949Sep 30, 2007 - Jun 30, 2021
    Role: Principal Investigator
    A Replacement 300 Kv IVEM for Meso-scale 3D Data Acquisition at the NCMIR
    NIH S10RR023026May 1, 2007 - Apr 30, 2008
    Role: Principal Investigator
    NIH R13GM077866Sep 1, 2006 - Aug 31, 2007
    Role: Principal Investigator
    National Alliance for Medical Image Computing (NAMIC)
    NIH U54EB005149Sep 17, 2004 - Jun 30, 2014
    Role: Co-Investigator
    NIH U24RR019701Jul 26, 2004 - Apr 30, 2010
    Role: Principal Investigator
    NIH R01NS046068Sep 30, 2002 - Aug 31, 2007
    Role: Principal Investigator
    NIH P42ES010337Jul 1, 2000 - Mar 31, 2022
    Role: Co-Investigator
    PKA & PKC Targeting Mechanisms (Program Project)
    NIH P01DK054441Dec 15, 1998 - Mar 31, 2019
    Role: Co-Investigator
    NIH R01DC003192Sep 30, 1997 - Jun 14, 2003
    Role: Principal Investigator
    IVEM and Image Analysis Resource
    NIH P41GM103412May 15, 1997 - Mar 31, 2020
    Role: Principal Investigator
    NIH P41RR008605Apr 15, 1994 - Apr 30, 2014
    Role: Co-Investigator
    NIH S06GM047165Sep 20, 1991 - Apr 30, 2000
    Role: Co-Investigator
    High Performance Computing for Biomedical Research
    NIH P41RR006009Sep 1, 1990 - Jul 31, 2013
    Role: Co-Investigator
    Integrated Center for InVivo Microscopy
    NIH P41RR005959Sep 1, 1990 - Jun 30, 2013
    Role: Co-Investigator
    NIH R01NS026739Aug 1, 1989 - Jul 31, 1997
    Role: Principal Investigator
    NIH R01NS027177Apr 1, 1989 - Dec 31, 2019
    Role: Principal Investigator
    IVEM and Image Analysis Resource
    NIH P41RR004050Dec 12, 1988 - Mar 31, 2014
    Role: Principal Investigator
    NIH R01NS014718Jul 1, 1978 - Apr 30, 2008
    Role: Principal Investigator

    Collapse Bibliographic 
    Collapse Publications
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Scalable electron tomography for connectomics. bioRxiv. 2024 Jun 06. Kuan AT, Phan S, Kim KY, Mackey M, Kim M, Peltier ST, Ellisman M, Lee WA. PMID: 38895398; PMCID: PMC11185748.
      View in: PubMed   Mentions:
    2. Synaptic architecture of a memory engram in the mouse hippocampus. bioRxiv. 2024 Apr 25. Uytiepo M, Zhu Y, Bushong E, Polli F, Chou K, Zhao E, Kim C, Luu D, Chang L, Quach T, Haberl M, Patapoutian L, Beutter E, Zhang W, Dong B, McCue E, Ellisman M, Maximov A. PMID: 38712256; PMCID: PMC11071366.
      View in: PubMed   Mentions:
    3. Mesoscale Metabolic Channeling Revealed by Multimodal Microscopy. Res Sq. 2024 Apr 17. E Drigo RA, Habashy A, Acree C, Kim KY, Deerinck T, Patterson E, Lantier L, McGuinness O, Ellisman M. PMID: 38699373; PMCID: PMC11065083.
      View in: PubMed   Mentions:
    4. An inner mitochondrial membrane microprotein from the SLC35A4 upstream ORF regulates cellular metabolism. J Mol Biol. 2024 Apr 03; 168559. Rocha AL, Pai V, Perkins G, Chang T, Ma J, Chu Q, Vaughan JM, Diedrich JK, Ellisman MH, Saghatelian A. PMID: 38580077.
      View in: PubMed   Mentions:    Fields:    Translation:HumansCells
    5. AIBP controls TLR4 inflammarafts and mitochondrial dysfunction in a mouse model of Alzheimer's disease. bioRxiv. 2024 Mar 27. Kim YS, Choi SH, Kim KY, Navia-Pelaez JM, Perkins GA, Choi S, Kim J, Nazarenkov N, Rissman RA, Ju WK, Ellisman MH, Miller YI. PMID: 38586011; PMCID: PMC10996524.
      View in: PubMed   Mentions:
    6. New rabies viral resources for multi-scale neural circuit mapping. Mol Psychiatry. 2024 Feb 14. Bouin A, Wu G, Koyuncu OO, Ye Q, Kim KY, Wu MY, Tong L, Chen L, Phan S, Mackey MR, Ramachandra R, Ellisman MH, Holmes TC, Semler BL, Xu X. PMID: 38355784.
      View in: PubMed   Mentions:    Fields:    
    7. Retrolaminar Demyelination of Structurally Intact Axons in Nonhuman Primate Experimental Glaucoma. Invest Ophthalmol Vis Sci. 2024 Feb 01; 65(2):36. Chaudhary P, Lockwood H, Stowell C, Bushong E, Reynaud J, Yang H, Gardiner SK, Wiliams G, Williams I, Ellisman M, Marsh-Armstrong N, Burgoyne C. PMID: 38407858; PMCID: PMC10902877.
      View in: PubMed   Mentions:    Fields:    Translation:AnimalsCells
    8. Glioma-Induced Alterations in Excitatory Neurons are Reversed by mTOR Inhibition. bioRxiv. 2024 Jan 21. Goldberg AR, Dovas A, Torres D, Sharma SD, Mela A, Merricks EM, Olabarria M, Shokooh LA, Zhao HT, Kotidis C, Calvaresi P, Viswanathan A, Banu MA, Razavilar A, Sudhakar TD, Saxena A, Chokran C, Humala N, Mahajan A, Xu W, Metz JB, Chen C, Bushong EA, Boassa D, Ellisman MH, Hillman EMC, McKhann GM, Gill BJA, Rosenfeld SS, Schevon CA, Bruce JN, Sims PA, Peterka DS, Canoll P. PMID: 38293120; PMCID: PMC10827113.
      View in: PubMed   Mentions:
    9. Microbially induced precipitation of silica by anaerobic methane-oxidizing consortia and implications for microbial fossil preservation. Proc Natl Acad Sci U S A. 2023 Dec 19; 120(51):e2302156120. Osorio-Rodriguez D, Metcalfe KS, McGlynn SE, Yu H, Dekas AE, Ellisman M, Deerinck T, Aristilde L, Grotzinger JP, Orphan VJ. PMID: 38079551; PMCID: PMC10743459.
      View in: PubMed   Mentions:    Fields:    Translation:Cells
    10. Proximal Molecular Probe Transfer (PROMPT), a new approach for identifying sites of protein/nucleic acid interaction in cells by correlated light and electron microscopy. Sci Rep. 2023 12 05; 13(1):21462. Castillon GA, Phan S, Hu J, Boassa D, Adams SR, Ellisman MH. PMID: 38052818; PMCID: PMC10697944.
      View in: PubMed   Mentions:    Fields:    Translation:Cells
    11. Perineuronal nets and the neuronal extracellular matrix can be imaged by genetically encoded labeling of HAPLN1 in vitro and in vivo. bioRxiv. 2023 Nov 30. Lemieux SP, Lev-Ram V, Tsien RY, Ellisman MH. PMID: 38076839; PMCID: PMC10705503.
      View in: PubMed   Mentions:
    12. Cristae formation is a mechanical buckling event controlled by the inner mitochondrial membrane lipidome. EMBO J. 2023 Dec 11; 42(24):e114054. Venkatraman K, Lee CT, Garcia GC, Mahapatra A, Milshteyn D, Perkins G, Kim KY, Pasolli HA, Phan S, Lippincott-Schwartz J, Ellisman MH, Rangamani P, Budin I. PMID: 37933600; PMCID: PMC10711667.
      View in: PubMed   Mentions: 5     Fields:    Translation:AnimalsCells
    13. Astrocyte ensheathment of calyx-forming axons of the auditory brainstem precedes accelerated expression of myelin genes and myelination by oligodendrocytes. J Comp Neurol. 2024 Feb; 532(2):e25552. Heller DT, Kolson DR, Brandebura AN, Amick EM, Wan J, Ramadan J, Holcomb PS, Liu S, Deerinck TJ, Ellisman MH, Qian J, Mathers PH, Spirou GA. PMID: 37916792; PMCID: PMC10922096.
      View in: PubMed   Mentions: 2     Fields:    Translation:AnimalsCells
    14. Fe-TAMLs as a new class of small molecule peroxidase probes for correlated light and electron microscopy. bioRxiv. 2023 Oct 04. Adams SR, Mackey MR, Ramachandra R, Deerinck TJ, Castillon GA, Phan S, Hu J, Boassa D, Ngo JT, Ellisman MH. PMID: 37662194; PMCID: PMC10473768.
      View in: PubMed   Mentions:
    15. Proximal Molecular Probe Transfer (PROMPT), a new approach for identifying sites of protein/nucleic acid interaction in cells by correlated light and electron microscopy. bioRxiv. 2023 Sep 25. Castillon GA, Phan S, Hu J, Boassa D, Adams SR, Ellisman MH. PMID: 37808832; PMCID: PMC10557592.
      View in: PubMed   Mentions:
    16. Caloric restriction promotes beta cell longevity and delays aging and senescence by enhancing cell identity and homeostasis mechanisms. Res Sq. 2023 Sep 20. Dos Santos C, Shrestha S, Cottam M, Perkins G, Lev-Ram V, Roy B, Acree C, Kim KY, Deerinck T, Cutler M, Dean D, Cartailler JP, MacDonald PE, Hetzer M, Ellisman M, Drigo RAE. PMID: 37790446; PMCID: PMC10543285.
      View in: PubMed   Mentions:
    17. Mechanistic multiscale modelling of energy metabolism in human astrocytes reveals the impact of morphology changes in Alzheimer's Disease. PLoS Comput Biol. 2023 09; 19(9):e1011464. Farina S, Voorsluijs V, Fixemer S, Bouvier DS, Claus S, Ellisman MH, Bordas SPA, Skupin A. PMID: 37729344; PMCID: PMC10545114.
      View in: PubMed   Mentions:    Fields:    Translation:HumansCells
    18. Enhanced mitochondrial buffering prevents Ca2+ overload in naked mole-rat brain. J Physiol. 2023 Sep 05. Cheng H, Perkins GA, Ju S, Kim K, Ellisman MH, Pamenter ME. PMID: 37668020; PMCID: PMC10912373.
      View in: PubMed   Mentions:    Fields:    
    19. Cristae formation is a mechanical buckling event controlled by the inner membrane lipidome. bioRxiv. 2023 Sep 02. Venkatraman K, Lee CT, Garcia GC, Mahapatra A, Milshteyn D, Perkins G, Kim KY, Pasolli HA, Phan S, Lippincott-Schwartz J, Ellisman MH, Rangamani P, Budin I. PMID: 36993370; PMCID: PMC10054968.
      View in: PubMed   Mentions:
    20. Caloric restriction promotes beta cell longevity and delays aging and senescence by enhancing cell identity and homeostasis mechanisms. bioRxiv. 2023 Aug 24. Dos Santos C, Shrestha S, Cottam M, Perkins G, Lev-Ram V, Roy B, Acree C, Kim KY, Deerinck T, Cutler M, Dean D, Cartailler JP, MacDonald PE, Hetzer M, Ellisman M, E Drigo RA. PMID: 37662336; PMCID: PMC10473730.
      View in: PubMed   Mentions:
    21. Ultrastructure of Synaptic Connectivity within Subregions of the Suprachiasmatic Nucleus Revealed by a Genetically Encoded Tag and Serial Blockface Electron Microscopy. eNeuro. 2023 08; 10(8). Calligaro H, Shoghi A, Chen X, Kim KY, Yu HL, Khov B, Finander B, Le H, Ellisman MH, Panda S. PMID: 37500494; PMCID: PMC10449486.
      View in: PubMed   Mentions:    Fields:    Translation:AnimalsCells
    22. Photoreceptor disc incisures form as an adaptive mechanism ensuring the completion of disc enclosure. Elife. 2023 07 14; 12. Lewis TR, Phan S, Castillo CM, Kim KY, Coppenrath K, Thomas W, Hao Y, Skiba NP, Horb ME, Ellisman MH, Arshavsky VY. PMID: 37449984; PMCID: PMC10361718.
      View in: PubMed   Mentions: 3     Fields:    Translation:AnimalsCells
    23. Spatial and functional arrangement of Ebola virus polymerase inside phase-separated viral factories. Nat Commun. 2023 07 13; 14(1):4159. Fang J, Castillon G, Phan S, McArdle S, Hariharan C, Adams A, Ellisman MH, Deniz AA, Saphire EO. PMID: 37443171; PMCID: PMC10345124.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansCells
    24. Three-Dimensional Ultrastructure of the Normal Rod Photoreceptor Synapse and Degenerative Changes Induced by Retinal Detachment. J Neurosci. 2023 07 26; 43(30):5468-5482. Torten G, Fisher SK, Linberg KA, Luna G, Perkins G, Ellisman MH, Williams DS. PMID: 37414561; PMCID: PMC10376940.
      View in: PubMed   Mentions: 1     Fields:    Translation:AnimalsCells
    25. High-resolution volumetric imaging constrains compartmental models to explore synaptic integration and temporal processing by cochlear nucleus globular bushy cells. Elife. 2023 06 08; 12. Spirou GA, Kersting M, Carr S, Razzaq B, Yamamoto Alves Pinto C, Dawson M, Ellisman MH, Manis PB. PMID: 37288824; PMCID: PMC10435236.
      View in: PubMed   Mentions: 1     Fields:    Translation:AnimalsCells
    26. Glaucoma-associated Optineurin mutations increase transmitophagy in a vertebrate optic nerve. bioRxiv. 2023 May 30. Jeong Y, Davis CO, Muscarella AM, Deshpande V, Kim KY, Ellisman MH, Marsh-Armstrong N. PMID: 37398269; PMCID: PMC10312487.
      View in: PubMed   Mentions:
    27. TorsinA is essential for the timing and localization of neuronal nuclear pore complex biogenesis. bioRxiv. 2023 Apr 27. Kim S, Phan S, Shaw TR, Ellisman MH, Veatch SL, Barmada SJ, Pappas SS, Dauer WT. PMID: 37162852; PMCID: PMC10168336.
      View in: PubMed   Mentions:
    28. Do perineuronal nets stabilize the engram of a synaptic circuit? bioRxiv. 2023 Apr 09. Lev-Ram V, Lemieux SP, Deerinck TJ, Bushong EA, Toyama BH, Perez A, Pritchard DR, Park SKR, McClatchy DB, Savas JN, Taylor SS, Ellisman MH, Yates J, Tsien RY. PMID: 37066274; PMCID: PMC10104172.
      View in: PubMed   Mentions:
    29. Photoreceptor disc incisures form as an adaptive mechanism ensuring the completion of disc enclosure. bioRxiv. 2023 Apr 07. Lewis TR, Phan S, Castillo CM, Kim KY, Coppenrath K, Thomas W, Hao Y, Skiba NP, Horb ME, Ellisman MH, Arshavsky VY. PMID: 37066355; PMCID: PMC10104153.
      View in: PubMed   Mentions:
    30. Spatial mapping of mitochondrial networks and bioenergetics in lung cancer. Nature. 2023 03; 615(7953):712-719. Han M, Bushong EA, Segawa M, Tiard A, Wong A, Brady MR, Momcilovic M, Wolf DM, Zhang R, Petcherski A, Madany M, Xu S, Lee JT, Poyurovsky MV, Olszewski K, Holloway T, Gomez A, John MS, Dubinett SM, Koehler CM, Shirihai OS, Stiles L, Lisberg A, Soatto S, Sadeghi S, Ellisman MH, Shackelford DB. PMID: 36922590; PMCID: PMC10033418.
      View in: PubMed   Mentions: 15     Fields:    Translation:HumansCells
    31. A Cristae-Like Microcompartment in Desulfobacterota. mBio. 2022 12 20; 13(6):e0161322. McGlynn SE, Perkins G, Sim MS, Mackey M, Deerinck TJ, Thor A, Phan S, Ballard D, Ellisman MH, Orphan VJ. PMID: 36321837; PMCID: PMC9764997.
      View in: PubMed   Mentions:    Fields:    Translation:AnimalsCells
    32. Microvesicle release from inner segments of healthy photoreceptors is a conserved phenomenon in mammalian species. Dis Model Mech. 2022 11 01; 15(12). Lewis TR, Phan S, Kim KY, Jha I, Castillo CM, Ding JD, Sajdak BS, Merriman DK, Ellisman MH, Arshavsky VY. PMID: 36420970; PMCID: PMC9796728.
      View in: PubMed   Mentions: 2     Fields:    Translation:HumansAnimalsCells
    33. A Uniform and Isotropic Cytoskeletal Tiling Fills Dendritic Spines. eNeuro. 2022 Sep-Oct; 9(5). Eberhardt F, Bushong EA, Phan S, Peltier S, Monteagudo-Mesas P, Weinkauf T, Herz AVM, Stemmler M, Ellisman M. PMID: 36216507; PMCID: PMC9617608.
      View in: PubMed   Mentions: 2     Fields:    Translation:AnimalsCells
    34. Defining the ultrastructure of the hematopoietic stem cell niche by correlative light and electron microscopy. Elife. 2022 08 09; 11. Agarwala S, Kim KY, Phan S, Ju S, Kong YE, Castillon GA, Bushong EA, Ellisman MH, Tamplin OJ. PMID: 35943143; PMCID: PMC9391045.
      View in: PubMed   Mentions: 3     Fields:    Translation:AnimalsCells
    35. Distinct tau neuropathology and cellular profiles of an APOE3 Christchurch homozygote protected against autosomal dominant Alzheimer's dementia. Acta Neuropathol. 2022 09; 144(3):589-601. Sepulveda-Falla D, Sanchez JS, Almeida MC, Boassa D, Acosta-Uribe J, Vila-Castelar C, Ramirez-Gomez L, Baena A, Aguillon D, Villalba-Moreno ND, Littau JL, Villegas A, Beach TG, White CL, Ellisman M, Krasemann S, Glatzel M, Johnson KA, Sperling RA, Reiman EM, Arboleda-Velasquez JF, Kosik KS, Lopera F, Quiroz YT. PMID: 35838824; PMCID: PMC9381462.
      View in: PubMed   Mentions: 23     Fields:    Translation:Humans
    36. Unconventional tonicity-regulated nuclear trafficking of NFAT5 mediated by KPNB1, XPOT and RUVBL2. J Cell Sci. 2022 07 01; 135(13). Cheung CY, Huang TT, Chow N, Zhang S, Zhao Y, Chau MP, Chan WC, Wong CCL, Boassa D, Phan S, Ellisman MH, Yates JR, Xu S, Yu Z, Zhang Y, Zhang R, Ng LL, Ko BCB. PMID: 35635291; PMCID: PMC9377714.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansAnimalsCells
    37. Learning binds new inputs into functional synaptic clusters via spinogenesis. Nat Neurosci. 2022 06; 25(6):726-737. Hedrick NG, Lu Z, Bushong E, Singhi S, Nguyen P, Magaña Y, Jilani S, Lim BK, Ellisman M, Komiyama T. PMID: 35654957.
      View in: PubMed   Mentions: 17     Fields:    Translation:AnimalsCells
    38. A combined EM and proteomic analysis places HIV-1 Vpu at the crossroads of retromer and ESCRT complexes: PTPN23 is a Vpu-cofactor. PLoS Pathog. 2021 11; 17(11):e1009409. Stoneham CA, Langer S, De Jesus PD, Wozniak JM, Lapek J, Deerinck T, Thor A, Pache L, Chanda SK, Gonzalez DJ, Ellisman M, Guatelli J. PMID: 34843601; PMCID: PMC8659692.
      View in: PubMed   Mentions:    Fields:    Translation:HumansCells
    39. Isolation and reconstruction of cardiac mitochondria from SBEM images using a deep learning-based method. J Struct Biol. 2022 03; 214(1):107806. Hatano A, Someya M, Tanaka H, Sakakima H, Izumi S, Hoshijima M, Ellisman M, McCulloch AD. PMID: 34742833.
      View in: PubMed   Mentions: 2     Fields:    Translation:Cells
    40. Morphological principles of neuronal mitochondria. J Comp Neurol. 2022 04; 530(6):886-902. Mendelsohn R, Garcia GC, Bartol TM, Lee CT, Khandelwal P, Liu E, Spencer DJ, Husar A, Bushong EA, Phan S, Perkins G, Ellisman MH, Skupin A, Sejnowski TJ, Rangamani P. PMID: 34608995; PMCID: PMC8831469.
      View in: PubMed   Mentions: 7     Fields:    Translation:AnimalsCells
    41. Identification of long-lived proteins in the mitochondria reveals increased stability of the electron transport chain. Dev Cell. 2021 11 08; 56(21):2952-2965.e9. Krishna S, Arrojo E Drigo R, Capitanio JS, Ramachandra R, Ellisman M, Hetzer MW. PMID: 34715012; PMCID: PMC8664086.
      View in: PubMed   Mentions: 14     Fields:    Translation:AnimalsCells
    42. SARS-CoV-2 spike protein induces abnormal inflammatory blood clots neutralized by fibrin immunotherapy. bioRxiv. 2021 Oct 13. Ryu JK, Sozmen EG, Dixit K, Montano M, Matsui Y, Liu Y, Helmy E, Deerinck TJ, Yan Z, Schuck R, Acevedo RM, Spencer CM, Thomas R, Pico AR, Zamvil SS, Lynch KL, Ellisman MH, Greene WC, Akassoglou K. PMID: 34671772; PMCID: PMC8528086.
      View in: PubMed   Mentions: 1  
    43. Clathrin packets move in slow axonal transport and deliver functional payloads to synapses. Neuron. 2021 09 15; 109(18):2884-2901.e7. Ganguly A, Sharma R, Boyer NP, Wernert F, Phan S, Boassa D, Parra L, Das U, Caillol G, Han X, Yates JR, Ellisman MH, Leterrier C, Roy S. PMID: 34534453; PMCID: PMC8457040.
      View in: PubMed   Mentions: 7     Fields:    Translation:AnimalsCells
    44. BMP receptor blockade overcomes extrinsic inhibition of remyelination and restores neurovascular homeostasis. Brain. 2021 09 04; 144(8):2291-2301. Petersen MA, Tognatta R, Meyer-Franke A, Bushong EA, Mendiola AS, Yan Z, Muthusamy A, Merlini M, Meza-Acevedo R, Cabriga B, Zhou Y, Thomas R, Ryu JK, Lassmann H, Ellisman MH, Akassoglou K. PMID: 34426831; PMCID: PMC8418337.
      View in: PubMed   Mentions: 10     Fields:    Translation:AnimalsCells
    45. Systematic morphological and morphometric analysis of identified olfactory receptor neurons in Drosophila melanogaster. Elife. 2021 08 23; 10. Nava Gonzales C, McKaughan Q, Bushong EA, Cauwenberghs K, Ng R, Madany M, Ellisman MH, Su CY. PMID: 34423777; PMCID: PMC8410077.
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    46. Spatially resolved correlative microscopy and microbial identification reveal dynamic depth- and mineral-dependent anabolic activity in salt marsh sediment. Environ Microbiol. 2021 08; 23(8):4756-4777. Marlow J, Spietz R, Kim KY, Ellisman M, Girguis P, Hatzenpichler R. PMID: 34346142; PMCID: PMC8456820.
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    47. Elemental mapping of labelled biological specimens at intermediate energy loss in an energy-filtered TEM acquired using a direct detection device. J Microsc. 2021 08; 283(2):127-144. Ramachandra R, Mackey MR, Hu J, Peltier ST, Xuong NH, Ellisman MH, Adams SR. PMID: 33844293; PMCID: PMC8316382.
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    48. Nanoscale 3D EM reconstructions reveal intrinsic mechanisms of structural diversity of chemical synapses. Cell Rep. 2021 04 06; 35(1):108953. Zhu Y, Uytiepo M, Bushong E, Haberl M, Beutter E, Scheiwe F, Zhang W, Chang L, Luu D, Chui B, Ellisman M, Maximov A. PMID: 33826888; PMCID: PMC8354523.
      View in: PubMed   Mentions: 9     Fields:    Translation:AnimalsCells
    49. Genetic requirements for cell division in a genomically minimal cell. Cell. 2021 04 29; 184(9):2430-2440.e16. Pelletier JF, Sun L, Wise KS, Assad-Garcia N, Karas BJ, Deerinck TJ, Ellisman MH, Mershin A, Gershenfeld N, Chuang RY, Glass JI, Strychalski EA. PMID: 33784496.
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    50. Publisher Correction: Chromothripsis drives the evolution of gene amplification in cancer. Nature. 2021 Mar; 591(7850):E19. Shoshani O, Brunner SF, Yaeger R, Ly P, Nechemia-Arbely Y, Kim DH, Fang R, Castillon GA, Yu M, Li JSZ, Sun Y, Ellisman MH, Ren B, Campbell PJ, Cleveland DW. PMID: 33649505.
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    51. Activation of NF-κB and p300/CBP potentiates cancer chemoimmunotherapy through induction of MHC-I antigen presentation. Proc Natl Acad Sci U S A. 2021 02 23; 118(8). Zhou Y, Bastian IN, Long MD, Dow M, Li W, Liu T, Ngu RK, Antonucci L, Huang JY, Phung QT, Zhao XH, Banerjee S, Lin XJ, Wang H, Dang B, Choi S, Karin D, Su H, Ellisman MH, Jamieson C, Bosenberg M, Cheng Z, Haybaeck J, Kenner L, Fisch KM, Bourgon R, Hernandez G, Lill JR, Liu S, Carter H, Mellman I, Karin M, Shalapour S. PMID: 33602823; PMCID: PMC7923353.
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    52. Anatomy and activity patterns in a multifunctional motor neuron and its surrounding circuits. Elife. 2021 02 15; 10. Ashaber M, Tomina Y, Kassraian P, Bushong EA, Kristan WB, Ellisman MH, Wagenaar DA. PMID: 33587033; PMCID: PMC7954528.
      View in: PubMed   Mentions: 4     Fields:    Translation:AnimalsCells
    53. Genetic Probe for Visualizing Glutamatergic Synapses and Vesicles by 3D Electron Microscopy. ACS Chem Neurosci. 2021 02 17; 12(4):626-639. Steinkellner T, Madany M, Haberl MG, Zell V, Li C, Hu J, Mackey M, Ramachandra R, Adams S, Ellisman MH, Hnasko TS, Boassa D. PMID: 33522227; PMCID: PMC7899175.
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    54. Chromothripsis drives the evolution of gene amplification in cancer. Nature. 2021 03; 591(7848):137-141. Shoshani O, Brunner SF, Yaeger R, Ly P, Nechemia-Arbely Y, Kim DH, Fang R, Castillon GA, Yu M, Li JSZ, Sun Y, Ellisman MH, Ren B, Campbell PJ, Cleveland DW. PMID: 33361815; PMCID: PMC7933129.
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    55. Microglial Gi-dependent dynamics regulate brain network hyperexcitability. Nat Neurosci. 2021 01; 24(1):19-23. Merlini M, Rafalski VA, Ma K, Kim KY, Bushong EA, Rios Coronado PE, Yan Z, Mendiola AS, Sozmen EG, Ryu JK, Haberl MG, Madany M, Sampson DN, Petersen MA, Bardehle S, Tognatta R, Dean T, Acevedo RM, Cabriga B, Thomas R, Coughlin SR, Ellisman MH, Palop JJ, Akassoglou K. PMID: 33318667; PMCID: PMC8118167.
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    56. Two types of somatic spines provide sites for intercellular signaling during calyx of Held growth and maturation. Synapse. 2021 03; 75(3):e22189. Jackson D, Holcomb P, Ellisman M, Spirou G. PMID: 33025635.
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    57. AIBP protects retinal ganglion cells against neuroinflammation and mitochondrial dysfunction in glaucomatous neurodegeneration. Redox Biol. 2020 10; 37:101703. Choi SH, Kim KY, Perkins GA, Phan S, Edwards G, Xia Y, Kim J, Skowronska-Krawczyk D, Weinreb RN, Ellisman MH, Miller YI, Ju WK. PMID: 32896719; PMCID: PMC7484594.
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    58. Rational Design of Bioavailable Photosensitizers for Manipulation and Imaging of Biological Systems. Cell Chem Biol. 2020 08 20; 27(8):1063-1072.e7. Binns TC, Ayala AX, Grimm JB, Tkachuk AN, Castillon GA, Phan S, Zhang L, Brown TA, Liu Z, Adams SR, Ellisman MH, Koyama M, Lavis LD. PMID: 32698018; PMCID: PMC7483975.
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    59. C. elegans MAGU-2/Mpp5 homolog regulates epidermal phagocytosis and synapse density. J Neurogenet. 2020 Sep-Dec; 34(3-4):298-306. Cherra SJ, Goncharov A, Boassa D, Ellisman M, Jin Y. PMID: 32366143; PMCID: PMC7609615.
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    60. Toric Spines at a Site of Learning. eNeuro. 2020 Jan/Feb; 7(1). Sanculi D, Pannoni KE, Bushong EA, Crump M, Sung M, Popat V, Zaher C, Hicks E, Song A, Mofakham N, Li P, Antzoulatos EG, Fioravante D, Ellisman MH, DeBello WM. PMID: 31822521; PMCID: PMC6944481.
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    61. Photoreceptor disc membranes are formed through an Arp2/3-dependent lamellipodium-like mechanism. Proc Natl Acad Sci U S A. 2019 Dec 26; 116(52):27043-27052. Spencer WJ, Lewis TR, Phan S, Cady MA, Serebrovskaya EO, Schneider NF, Kim KY, Cameron LA, Skiba NP, Ellisman MH, Arshavsky VY. PMID: 31843915; PMCID: PMC6936530.
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    62. Mitochondrial morphology provides a mechanism for energy buffering at synapses. Sci Rep. 2019 12 04; 9(1):18306. Garcia GC, Bartol TM, Phan S, Bushong EA, Perkins G, Sejnowski TJ, Ellisman MH, Skupin A. PMID: 31797946; PMCID: PMC6893035.
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    63. Sparse force-bearing bridges between neighboring synaptic vesicles. Brain Struct Funct. 2019 Dec; 224(9):3263-3276. Wesseling JF, Phan S, Bushong EA, Siksou L, Marty S, Pérez-Otaño I, Ellisman M. PMID: 31667576; PMCID: PMC6875159.
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    64. Correction to Directed Evolution of Split APEX2 Peroxidase. ACS Chem Biol. 2019 Dec 20; 14(12):2942. Han Y, Branon TC, Martell JD, Boassa D, Shechner D, Ellisman MH, Ting A. PMID: 31657543.
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    65. Synaptic Specializations of Melanopsin-Retinal Ganglion Cells in Multiple Brain Regions Revealed by Genetic Label for Light and Electron Microscopy. Cell Rep. 2019 10 15; 29(3):628-644.e6. Kim KY, Rios LC, Le H, Perez AJ, Phan S, Bushong EA, Deerinck TJ, Liu YH, Ellisman MA, Lev-Ram V, Ju S, Panda SA, Yoon S, Hirayama M, Mure LS, Hatori M, Ellisman MH, Panda S. PMID: 31618632; PMCID: PMC7045601.
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    66. Author Correction: Structural basis for delta cell paracrine regulation in pancreatic islets. Nat Commun. 2019 Sep 11; 10(1):4218. E Drigo RA, Jacob S, García-Prieto CF, Zheng X, Fukuda M, Nhu HTT, Stelmashenko O, Peçanha FLM, Rodriguez-Diaz R, Bushong E, Deerinck T, Phan S, Ali Y, Leibiger I, Chua M, Boudier T, Song SH, Graf M, Augustine GJ, Ellisman MH, Berggren PO. PMID: 31511521; PMCID: PMC6739466.
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    67. Two Pathways for the Activity-Dependent Growth and Differentiation of Synaptic Boutons in Drosophila. eNeuro. 2019 Jul/Aug; 6(4). Vasin A, Sabeva N, Torres C, Phan S, Bushong EA, Ellisman MH, Bykhovskaia M. PMID: 31387877; PMCID: PMC6709223.
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    68. Structural basis for delta cell paracrine regulation in pancreatic islets. Nat Commun. 2019 08 16; 10(1):3700. Arrojo E Drigo R, Jacob S, García-Prieto CF, Zheng X, Fukuda M, Nhu HTT, Stelmashenko O, Peçanha FLM, Rodriguez-Diaz R, Bushong E, Deerinck T, Phan S, Ali Y, Leibiger I, Chua M, Boudier T, Song SH, Graf M, Augustine GJ, Ellisman MH, Berggren PO. PMID: 31420552; PMCID: PMC6697679.
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    69. Class IIa HDACs regulate learning and memory through dynamic experience-dependent repression of transcription. Nat Commun. 2019 08 02; 10(1):3469. Zhu Y, Huang M, Bushong E, Phan S, Uytiepo M, Beutter E, Boemer D, Tsui K, Ellisman M, Maximov A. PMID: 31375688; PMCID: PMC6677776.
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    70. Split-miniSOG for Spatially Detecting Intracellular Protein-Protein Interactions by Correlated Light and Electron Microscopy. Cell Chem Biol. 2019 10 17; 26(10):1407-1416.e5. Boassa D, Lemieux SP, Lev-Ram V, Hu J, Xiong Q, Phan S, Mackey M, Ramachandra R, Peace RE, Adams SR, Ellisman MH, Ngo JT. PMID: 31378710; PMCID: PMC6800643.
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    71. The dynamic switch mechanism that leads to activation of LRRK2 is embedded in the DFGψ motif in the kinase domain. Proc Natl Acad Sci U S A. 2019 07 23; 116(30):14979-14988. Schmidt SH, Knape MJ, Boassa D, Mumdey N, Kornev AP, Ellisman MH, Taylor SS, Herberg FW. PMID: 31292254; PMCID: PMC6660771.
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    72. PRCD is essential for high-fidelity photoreceptor disc formation. Proc Natl Acad Sci U S A. 2019 06 25; 116(26):13087-13096. Spencer WJ, Ding JD, Lewis TR, Yu C, Phan S, Pearring JN, Kim KY, Thor A, Mathew R, Kalnitsky J, Hao Y, Travis AM, Biswas SK, Lo WK, Besharse JC, Ellisman MH, Saban DR, Burns ME, Arshavsky VY. PMID: 31189593; PMCID: PMC6601265.
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    73. Age Mosaicism across Multiple Scales in Adult Tissues. Cell Metab. 2019 08 06; 30(2):343-351.e3. Arrojo E Drigo R, Lev-Ram V, Tyagi S, Ramachandra R, Deerinck T, Bushong E, Phan S, Orphan V, Lechene C, Ellisman MH, Hetzer MW. PMID: 31178361; PMCID: PMC7289515.
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    74. Asymmetric ephaptic inhibition between compartmentalized olfactory receptor neurons. Nat Commun. 2019 04 05; 10(1):1560. Zhang Y, Tsang TK, Bushong EA, Chu LA, Chiang AS, Ellisman MH, Reingruber J, Su CY. PMID: 30952860; PMCID: PMC6451019.
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    75. Adipocyte lipolysis affects Perilipin 5 and cristae organization at the cardiac lipid droplet-mitochondrial interface. Sci Rep. 2019 03 18; 9(1):4734. Varghese M, Kimler VA, Ghazi FR, Rathore GK, Perkins GA, Ellisman MH, Granneman JG. PMID: 30894648; PMCID: PMC6426865.
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    76. Directed Evolution of Split APEX2 Peroxidase. ACS Chem Biol. 2019 04 19; 14(4):619-635. Han Y, Branon TC, Martell JD, Boassa D, Shechner D, Ellisman MH, Ting A. PMID: 30848125; PMCID: PMC6548188.
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    77. Visualization of long-lived proteins reveals age mosaicism within nuclei of postmitotic cells. J Cell Biol. 2019 02 04; 218(2):433-444. Toyama BH, Arrojo E Drigo R, Lev-Ram V, Ramachandra R, Deerinck TJ, Lechene C, Ellisman MH, Hetzer MW. PMID: 30552100; PMCID: PMC6363465.
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    78. Verifying, Challenging, and Discovering New Synapses Among Fully EM-Reconstructed Neurons in the Leech Ganglion. Front Neuroanat. 2018; 12:95. Pipkin JE, Bushong EA, Ellisman MH, Kristan WB. PMID: 30487738; PMCID: PMC6246621.
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    79. Fibrin-targeting immunotherapy protects against neuroinflammation and neurodegeneration. Nat Immunol. 2018 11; 19(11):1212-1223. Ryu JK, Rafalski VA, Meyer-Franke A, Adams RA, Poda SB, Rios Coronado PE, Pedersen LØ, Menon V, Baeten KM, Sikorski SL, Bedard C, Hanspers K, Bardehle S, Mendiola AS, Davalos D, Machado MR, Chan JP, Plastira I, Petersen MA, Pfaff SJ, Ang KK, Hallenbeck KK, Syme C, Hakozaki H, Ellisman MH, Swanson RA, Zamvil SS, Arkin MR, Zorn SH, Pico AR, Mucke L, Freedman SB, Stavenhagen JB, Nelson RB, Akassoglou K. PMID: 30323343; PMCID: PMC6317891.
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    80. Nano-structural analysis of engrafted human induced pluripotent stem cell-derived cardiomyocytes in mouse hearts using a genetic-probe APEX2. Biochem Biophys Res Commun. 2018 11 10; 505(4):1251-1256. Hatani T, Funakoshi S, Deerinck TJ, Bushong EA, Kimura T, Takeshima H, Ellisman MH, Hoshijima M, Yoshida Y. PMID: 30333092; PMCID: PMC7478876.
      View in: PubMed   Mentions: 3     Fields:    Translation:HumansAnimalsCells
    81. CDeep3M-Plug-and-Play cloud-based deep learning for image segmentation. Nat Methods. 2018 09; 15(9):677-680. Haberl MG, Churas C, Tindall L, Boassa D, Phan S, Bushong EA, Madany M, Akay R, Deerinck TJ, Peltier ST, Ellisman MH. PMID: 30171236; PMCID: PMC6548193.
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    82. Dysfunctional Autism Risk Genes Cause Circuit-Specific Connectivity Deficits With Distinct Developmental Trajectories. Cereb Cortex. 2018 07 01; 28(7):2495-2506. Zerbi V, Ielacqua GD, Markicevic M, Haberl MG, Ellisman MH, A-Bhaskaran A, Frick A, Rudin M, Wenderoth N. PMID: 29901787; PMCID: PMC5998961.
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    83. Subgroup Characteristics of Marine Methane-Oxidizing ANME-2 Archaea and Their Syntrophic Partners as Revealed by Integrated Multimodal Analytical Microscopy. Appl Environ Microbiol. 2018 06 01; 84(11). McGlynn SE, Chadwick GL, O'Neill A, Mackey M, Thor A, Deerinck TJ, Ellisman MH, Orphan VJ. PMID: 29625978; PMCID: PMC5960974.
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    84. Iron-specific Signal Separation from within Heavy Metal Stained Biological Samples Using X-Ray Microtomography with Polychromatic Source and Energy-Integrating Detectors. Sci Rep. 2018 05 15; 8(1):7553. Katchalski T, Case T, Kim KY, Ramachandra R, Bushong EA, Deerinck TJ, Haberl MG, Mackey MR, Peltier S, Castillon GA, Fujikawa N, Lawrence AR, Ellisman MH. PMID: 29765060; PMCID: PMC5953933.
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    85. High-quality ultrastructural preservation using cryofixation for 3D electron microscopy of genetically labeled tissues. Elife. 2018 05 11; 7. Tsang TK, Bushong EA, Boassa D, Hu J, Romoli B, Phan S, Dulcis D, Su CY, Ellisman MH. PMID: 29749931; PMCID: PMC5988420.
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    86. Elevated intracellular cAMP exacerbates vulnerability to oxidative stress in optic nerve head astrocytes. Cell Death Dis. 2018 02 19; 9(3):285. Shim MS, Kim KY, Bu JH, Nam HS, Jeong SW, Park TL, Ellisman MH, Weinreb RN, Ju WK. PMID: 29459737; PMCID: PMC5833440.
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    87. Replication-dependent size reduction precedes differentiation in Chlamydia trachomatis. Nat Commun. 2018 01 03; 9(1):45. Lee JK, Enciso GA, Boassa D, Chander CN, Lou TH, Pairawan SS, Guo MC, Wan FYM, Ellisman MH, Sütterlin C, Tan M. PMID: 29298975; PMCID: PMC5752669.
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    88. Mitochondrial dysfunction in iPSC-derived neurons of subjects with chronic mountain sickness. J Appl Physiol (1985). 2018 09 01; 125(3):832-840. Zhao H, Perkins G, Yao H, Callacondo D, Appenzeller O, Ellisman M, La Spada AR, Haddad GG. PMID: 29357502; PMCID: PMC6734077.
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    89. High-performance serial block-face SEM of nonconductive biological samples enabled by focal gas injection-based charge compensation. J Microsc. 2018 05; 270(2):142-149. Deerinck TJ, Shone TM, Bushong EA, Ramachandra R, Peltier ST, Ellisman MH. PMID: 29194648; PMCID: PMC5910240.
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    90. Fibrinogen Activates BMP Signaling in Oligodendrocyte Progenitor Cells and Inhibits Remyelination after Vascular Damage. Neuron. 2017 Dec 06; 96(5):1003-1012.e7. Petersen MA, Ryu JK, Chang KJ, Etxeberria A, Bardehle S, Mendiola AS, Kamau-Devers W, Fancy SPJ, Thor A, Bushong EA, Baeza-Raja B, Syme CA, Wu MD, Rios Coronado PE, Meyer-Franke A, Yahn S, Pous L, Lee JK, Schachtrup C, Lassmann H, Huang EJ, Han MH, Absinta M, Reich DS, Ellisman MH, Rowitch DH, Chan JR, Akassoglou K. PMID: 29103804; PMCID: PMC5851281.
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    91. Probability Map Viewer: near real-time probability map generator of serial block electron microscopy collections. Bioinformatics. 2017 Oct 01; 33(19):3145-3147. Churas C, Perez AJ, Hakozaki H, Wong W, Lee D, Peltier ST, Ellisman MH. PMID: 28957496; PMCID: PMC5870650.
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    92. Correlative Microscopy Combining Secondary Ion Mass Spectrometry and Electron Microscopy: Comparison of Intensity-Hue-Saturation and Laplacian Pyramid Methods for Image Fusion. Anal Chem. 2017 10 17; 89(20):10702-10710. Vollnhals F, Audinot JN, Wirtz T, Mercier-Bonin M, Fourquaux I, Schroeppel B, Kraushaar U, Lev-Ram V, Ellisman MH, Eswara S. PMID: 28901122.
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    93. Sub-mitochondrial localization of the genetic-tagged mitochondrial intermembrane space-bridging components Mic19, Mic60 and Sam50. J Cell Sci. 2017 Oct 01; 130(19):3248-3260. Sastri M, Darshi M, Mackey M, Ramachandra R, Ju S, Phan S, Adams S, Stein K, Douglas CR, Kim JJ, Ellisman MH, Taylor SS, Perkins GA. PMID: 28808085; PMCID: PMC5665436.
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    94. Electron microscopy using the genetically encoded APEX2 tag in cultured mammalian cells. Nat Protoc. 2017 Sep; 12(9):1792-1816. Martell JD, Deerinck TJ, Lam SS, Ellisman MH, Ting AY. PMID: 28796234; PMCID: PMC5851282.
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    95. Microtubule-dependent ribosome localization in C. elegans neurons. Elife. 2017 08 02; 6. Noma K, Goncharov A, Ellisman MH, Jin Y. PMID: 28767038; PMCID: PMC5577916.
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    96. ChromEMT: Visualizing 3D chromatin structure and compaction in interphase and mitotic cells. Science. 2017 07 28; 357(6349). Ou HD, Phan S, Deerinck TJ, Thor A, Ellisman MH, O'Shea CC. PMID: 28751582; PMCID: PMC5646685.
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    97. The cell of origin dictates the temporal course of neurofibromatosis-1 (Nf1) low-grade glioma formation. Oncotarget. 2017 Jul 18; 8(29):47206-47215. Solga AC, Toonen JA, Pan Y, Cimino PJ, Ma Y, Castillon GA, Gianino SM, Ellisman MH, Lee DY, Gutmann DH. PMID: 28525381; PMCID: PMC5564557.
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    98. Pink1 and Parkin regulate Drosophila intestinal stem cell proliferation during stress and aging. J Cell Biol. 2017 08 07; 216(8):2315-2327. Koehler CL, Perkins GA, Ellisman MH, Jones DL. PMID: 28663346; PMCID: PMC5551703.
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    99. Activity-dependent trafficking of lysosomes in dendrites and dendritic spines. J Cell Biol. 2017 08 07; 216(8):2499-2513. Goo MS, Sancho L, Slepak N, Boassa D, Deerinck TJ, Ellisman MH, Bloodgood BL, Patrick GN. PMID: 28630145; PMCID: PMC5551717.
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    100. Assembly of Excitatory Synapses in the Absence of Glutamatergic Neurotransmission. Neuron. 2017 Apr 19; 94(2):312-321.e3. Sando R, Bushong E, Zhu Y, Huang M, Considine C, Phan S, Ju S, Uytiepo M, Ellisman M, Maximov A. PMID: 28426966; PMCID: PMC5521186.
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    101. Electron tomography simulator with realistic 3D phantom for evaluation of acquisition, alignment and reconstruction methods. J Struct Biol. 2017 05; 198(2):103-115. Wan X, Katchalski T, Churas C, Ghosh S, Phan S, Lawrence A, Hao Y, Zhou Z, Chen R, Chen Y, Zhang F, Ellisman MH. PMID: 28392451; PMCID: PMC5773259.
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    102. Fragility of foot process morphology in kidney podocytes arises from chaotic spatial propagation of cytoskeletal instability. PLoS Comput Biol. 2017 03; 13(3):e1005433. Falkenberg CV, Azeloglu EU, Stothers M, Deerinck TJ, Chen Y, He JC, Ellisman MH, Hone JC, Iyengar R, Loew LM. PMID: 28301477; PMCID: PMC5373631.
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    103. Proximity Biotinylation as a Method for Mapping Proteins Associated with mtDNA in Living Cells. Cell Chem Biol. 2017 Mar 16; 24(3):404-414. Han S, Udeshi ND, Deerinck TJ, Svinkina T, Ellisman MH, Carr SA, Ting AY. PMID: 28238724; PMCID: PMC5886301.
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    104. Parkinson Sac Domain Mutation in Synaptojanin 1 Impairs Clathrin Uncoating at Synapses and Triggers Dystrophic Changes in Dopaminergic Axons. Neuron. 2017 Feb 22; 93(4):882-896.e5. Cao M, Wu Y, Ashrafi G, McCartney AJ, Wheeler H, Bushong EA, Boassa D, Ellisman MH, Ryan TA, De Camilli P. PMID: 28231468; PMCID: PMC5340420.
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    105. Ultrastructural evidence for synaptic scaling across the wake/sleep cycle. Science. 2017 02 03; 355(6324):507-510. de Vivo L, Bellesi M, Marshall W, Bushong EA, Ellisman MH, Tononi G, Cirelli C. PMID: 28154076; PMCID: PMC5313037.
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    106. A Rab5 endosomal pathway mediates Parkin-dependent mitochondrial clearance. Nat Commun. 2017 01 30; 8:14050. Hammerling BC, Najor RH, Cortez MQ, Shires SE, Leon LJ, Gonzalez ER, Boassa D, Phan S, Thor A, Jimenez RE, Li H, Kitsis RN, Dorn GW, Sadoshima J, Ellisman MH, Gustafsson ÅB. PMID: 28134239; PMCID: PMC5290275.
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    107. Isoform-specific subcellular localization and function of protein kinase A identified by mosaic imaging of mouse brain. Elife. 2017 01 12; 6. Ilouz R, Lev-Ram V, Bushong EA, Stiles TL, Friedmann-Morvinski D, Douglas C, Goldberg JL, Ellisman MH, Taylor SS. PMID: 28079521; PMCID: PMC5300705.
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    108. Patterns and distribution of presynaptic and postsynaptic elements within serial electron microscopic reconstructions of neuronal arbors from the medicinal leech Hirudo verbana. J Comp Neurol. 2016 12 15; 524(18):3677-3695. Pipkin JE, Bushong EA, Ellisman MH, Kristan WB. PMID: 27636374; PMCID: PMC5063717.
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    109. High resolution three-dimensional reconstruction of fibrotic skeletal muscle extracellular matrix. J Physiol. 2017 02 15; 595(4):1159-1171. Gillies AR, Chapman MA, Bushong EA, Deerinck TJ, Ellisman MH, Lieber RL. PMID: 27859324; PMCID: PMC5309386.
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    110. Proteolipid protein-deficient myelin promotes axonal mitochondrial dysfunction via altered metabolic coupling. J Cell Biol. 2016 Nov 21; 215(4):531-542. Yin X, Kidd GJ, Ohno N, Perkins GA, Ellisman MH, Bastian C, Brunet S, Baltan S, Trapp BD. PMID: 27872255; PMCID: PMC5119941.
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    111. Multicolor Electron Microscopy for Simultaneous Visualization of Multiple Molecular Species. Cell Chem Biol. 2016 Nov 17; 23(11):1417-1427. Adams SR, Mackey MR, Ramachandra R, Palida Lemieux SF, Steinbach P, Bushong EA, Butko MT, Giepmans BNG, Ellisman MH, Tsien RY. PMID: 27818300; PMCID: PMC5127401.
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    112. Deceleration of probe beam by stage bias potential improves resolution of serial block-face scanning electron microscopic images. Adv Struct Chem Imaging. 2017; 2(1):11. Bouwer JC, Deerinck TJ, Bushong E, Astakhov V, Ramachandra R, Peltier ST, Ellisman MH. PMID: 27695667; PMCID: PMC5025511.
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    113. Tuning PAK Activity to Rescue Abnormal Myelin Permeability in HNPP. PLoS Genet. 2016 09; 12(9):e1006290. Hu B, Arpag S, Zhang X, Möbius W, Werner H, Sosinsky G, Ellisman M, Zhang Y, Hamilton A, Chernoff J, Li J. PMID: 27583434; PMCID: PMC5008806.
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    114. Consequences of excessive plasticity in the hippocampus induced by perinatal asphyxia. Exp Neurol. 2016 Dec; 286:116-123. Saraceno GE, Caceres LG, Guelman LR, Castilla R, Udovin LD, Ellisman MH, Brocco MA, Capani F. PMID: 27578426.
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    115. Proteomic Analysis of Unbounded Cellular Compartments: Synaptic Clefts. Cell. 2016 Aug 25; 166(5):1295-1307.e21. Loh KH, Stawski PS, Draycott AS, Udeshi ND, Lehrman EK, Wilton DK, Svinkina T, Deerinck TJ, Ellisman MH, Stevens B, Carr SA, Ting AY. PMID: 27565350; PMCID: PMC5167540.
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    116. 3D reconstruction of biological structures: automated procedures for alignment and reconstruction of multiple tilt series in electron tomography. Adv Struct Chem Imaging. 2017; 2:8. Phan S, Boassa D, Nguyen P, Wan X, Lanman J, Lawrence A, Ellisman MH. PMID: 27547706; PMCID: PMC4972035.
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    117. A split horseradish peroxidase for the detection of intercellular protein-protein interactions and sensitive visualization of synapses. Nat Biotechnol. 2016 07; 34(7):774-80. Martell JD, Yamagata M, Deerinck TJ, Phan S, Kwa CG, Ellisman MH, Sanes JR, Ting AY. PMID: 27240195; PMCID: PMC4942342.
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    118. Corrigendum to 'Visualizing viral protein structures in cells using genetic probes for correlated light and electron microscopy' [Methods 90 (2015) 39-48]. Methods. 2016 Jul 15; 104:206. Ou HD, Deerinck TJ, Bushong E, Ellisman MH, O'Shea CC. PMID: 27221672.
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    119. Click-EM for imaging metabolically tagged nonprotein biomolecules. Nat Chem Biol. 2016 06; 12(6):459-65. Ngo JT, Adams SR, Deerinck TJ, Boassa D, Rodriguez-Rivera F, Palida SF, Bertozzi CR, Ellisman MH, Tsien RY. PMID: 27110681; PMCID: PMC4871776.
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    120. Fine processes of Nestin-GFP-positive radial glia-like stem cells in the adult dentate gyrus ensheathe local synapses and vasculature. Proc Natl Acad Sci U S A. 2016 May 03; 113(18):E2536-45. Moss J, Gebara E, Bushong EA, Sánchez-Pascual I, O'Laoi R, El M'Ghari I, Kocher-Braissant J, Ellisman MH, Toni N. PMID: 27091993; PMCID: PMC4983830.
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    121. Design and synthesis of a minimal bacterial genome. Science. 2016 Mar 25; 351(6280):aad6253. Hutchison CA, Chuang RY, Noskov VN, Assad-Garcia N, Deerinck TJ, Ellisman MH, Gill J, Kannan K, Karas BJ, Ma L, Pelletier JF, Qi ZQ, Richter RA, Strychalski EA, Sun L, Suzuki Y, Tsvetanova B, Wise KS, Smith HO, Glass JI, Merryman C, Gibson DG, Venter JC. PMID: 27013737.
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    122. Structural analysis of the tongue and hyoid apparatus in a woodpecker. Acta Biomater. 2016 06; 37:1-13. Jung JY, Naleway SE, Yaraghi NA, Herrera S, Sherman VR, Bushong EA, Ellisman MH, Kisailus D, McKittrick J. PMID: 27000554; PMCID: PMC5063634.
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    123. NF-κB Restricts Inflammasome Activation via Elimination of Damaged Mitochondria. Cell. 2016 Feb 25; 164(5):896-910. Zhong Z, Umemura A, Sanchez-Lopez E, Liang S, Shalapour S, Wong J, He F, Boassa D, Perkins G, Ali SR, McGeough MD, Ellisman MH, Seki E, Gustafsson AB, Hoffman HM, Diaz-Meco MT, Moscat J, Karin M. PMID: 26919428; PMCID: PMC4769378.
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    124. Structural Characterization of the Extracellular Domain of CASPR2 and Insights into Its Association with the Novel Ligand Contactin1. J Biol Chem. 2016 Mar 11; 291(11):5788-5802. Rubio-Marrero EN, Vincelli G, Jeffries CM, Shaikh TR, Pakos IS, Ranaivoson FM, von Daake S, Demeler B, De Jaco A, Perkins G, Ellisman MH, Trewhella J, Comoletti D. PMID: 26721881; PMCID: PMC4786715.
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    125. Basal autophagy maintains pancreatic acinar cell homeostasis and protein synthesis and prevents ER stress. Proc Natl Acad Sci U S A. 2015 Nov 10; 112(45):E6166-74. Antonucci L, Fagman JB, Kim JY, Todoric J, Gukovsky I, Mackey M, Ellisman MH, Karin M. PMID: 26512112; PMCID: PMC4653219.
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    126. RNA Sequencing of Tumor-Associated Microglia Reveals Ccl5 as a Stromal Chemokine Critical for Neurofibromatosis-1 Glioma Growth. Neoplasia. 2015 Oct; 17(10):776-88. Solga AC, Pong WW, Kim KY, Cimino PJ, Toonen JA, Walker J, Wylie T, Magrini V, Griffith M, Griffith OL, Ly A, Ellisman MH, Mardis ER, Gutmann DH. PMID: 26585233; PMCID: PMC4656811.
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    127. Examination of the Effects of Heterogeneous Organization of RyR Clusters, Myofibrils and Mitochondria on Ca2+ Release Patterns in Cardiomyocytes. PLoS Comput Biol. 2015 Sep; 11(9):e1004417. Rajagopal V, Bass G, Walker CG, Crossman DJ, Petzer A, Hickey A, Siekmann I, Hoshijima M, Ellisman MH, Crampin EJ, Soeller C. PMID: 26335304; PMCID: PMC4559435.
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    128. DRP1 inhibition rescues retinal ganglion cells and their axons by preserving mitochondrial integrity in a mouse model of glaucoma. Cell Death Dis. 2015 Aug 06; 6:e1839. Kim KY, Perkins GA, Shim MS, Bushong E, Alcasid N, Ju S, Ellisman MH, Weinreb RN, Ju WK. PMID: 26247724; PMCID: PMC4558491.
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    129. Multiscale Modeling Indicates That Temperature Dependent [Ca2+]i Spiking in Astrocytes Is Quantitatively Consistent with Modulated SERCA Activity. Neural Plast. 2015; 2015:683490. Komin N, Moein M, Ellisman MH, Skupin A. PMID: 26347125; PMCID: PMC4539483.
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    130. Astrocytes phagocytose focal dystrophies from shortening myelin segments in the optic nerve of Xenopus laevis at metamorphosis. Proc Natl Acad Sci U S A. 2015 Aug 18; 112(33):10509-14. Mills EA, Davis CH, Bushong EA, Boassa D, Kim KY, Ellisman MH, Marsh-Armstrong N. PMID: 26240339; PMCID: PMC4547286.
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    131. Nuclear pore complex remodeling by p75(NTR) cleavage controls TGF-β signaling and astrocyte functions. Nat Neurosci. 2015 Aug; 18(8):1077-80. Schachtrup C, Ryu JK, Mammadzada K, Khan AS, Carlton PM, Perez A, Christian F, Le Moan N, Vagena E, Baeza-Raja B, Rafalski V, Chan JP, Nitschke R, Houslay MD, Ellisman MH, Wyss-Coray T, Palop JJ, Akassoglou K. PMID: 26120963; PMCID: PMC4878404.
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    132. Visualizing viral protein structures in cells using genetic probes for correlated light and electron microscopy. Methods. 2015 Nov 15; 90:39-48. Ou HD, Deerinck TJ, Bushong E, Ellisman MH, O'Shea CC. PMID: 26066760; PMCID: PMC4655137.
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    133. PKMζ, but not PKCλ, is rapidly synthesized and degraded at the neuronal synapse. J Neurosci. 2015 May 20; 35(20):7736-49. Palida SF, Butko MT, Ngo JT, Mackey MR, Gross LA, Ellisman MH, Tsien RY. PMID: 25995463; PMCID: PMC4438124.
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    134. Designer diatom episomes delivered by bacterial conjugation. Nat Commun. 2015 Apr 21; 6:6925. Karas BJ, Diner RE, Lefebvre SC, McQuaid J, Phillips AP, Noddings CM, Brunson JK, Valas RE, Deerinck TJ, Jablanovic J, Gillard JT, Beeri K, Ellisman MH, Glass JI, Hutchison CA, Smith HO, Venter JC, Allen AE, Dupont CL, Weyman PD. PMID: 25897682; PMCID: PMC4411287.
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    135. Correlative stochastic optical reconstruction microscopy and electron microscopy. PLoS One. 2015; 10(4):e0124581. Kim D, Deerinck TJ, Sigal YM, Babcock HP, Ellisman MH, Zhuang X. PMID: 25874453; PMCID: PMC4398493.
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    136. Efficient semi-automatic 3D segmentation for neuron tracing in electron microscopy images. J Neurosci Methods. 2015 May 15; 246:13-21. Jones C, Liu T, Cohan NW, Ellisman M, Tasdizen T. PMID: 25769273; PMCID: PMC4398646.
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    137. Pannexin2 oligomers localize in the membranes of endosomal vesicles in mammalian cells while Pannexin1 channels traffic to the plasma membrane. Front Cell Neurosci. 2014; 8:468. Boassa D, Nguyen P, Hu J, Ellisman MH, Sosinsky GE. PMID: 25698922; PMCID: PMC4313697.
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    138. Increased mitochondrial fission and volume density by blocking glutamate excitotoxicity protect glaucomatous optic nerve head astrocytes. Glia. 2015 May; 63(5):736-53. Ju WK, Kim KY, Noh YH, Hoshijima M, Lukas TJ, Ellisman MH, Weinreb RN, Perkins GA. PMID: 25557093; PMCID: PMC4373968.
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    139. Directed evolution of APEX2 for electron microscopy and proximity labeling. Nat Methods. 2015 Jan; 12(1):51-4. Lam SS, Martell JD, Kamer KJ, Deerinck TJ, Ellisman MH, Mootha VK, Ting AY. PMID: 25419960; PMCID: PMC4296904.
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    140. X-ray microscopy as an approach to increasing accuracy and efficiency of serial block-face imaging for correlated light and electron microscopy of biological specimens. Microsc Microanal. 2015 Feb; 21(1):231-8. Bushong EA, Johnson DD, Kim KY, Terada M, Hatori M, Peltier ST, Panda S, Merkle A, Ellisman MH. PMID: 25392009; PMCID: PMC4415271.
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    141. A workflow for the automatic segmentation of organelles in electron microscopy image stacks. Front Neuroanat. 2014; 8:126. Perez AJ, Seyedhosseini M, Deerinck TJ, Bushong EA, Panda S, Tasdizen T, Ellisman MH. PMID: 25426032; PMCID: PMC4224098.
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    142. Computational design of a red fluorophore ligase for site-specific protein labeling in living cells. Proc Natl Acad Sci U S A. 2014 Oct 28; 111(43):E4551-9. Liu DS, Nivón LG, Richter F, Goldman PJ, Deerinck TJ, Yao JZ, Richardson D, Phipps WS, Ye AZ, Ellisman MH, Drennan CL, Baker D, Ting AY. PMID: 25313043; PMCID: PMC4217414.
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    143. Three-dimensional reconstruction of skeletal muscle extracellular matrix ultrastructure. Microsc Microanal. 2014 Dec; 20(6):1835-40. Gillies AR, Bushong EA, Deerinck TJ, Ellisman MH, Lieber RL. PMID: 25275291; PMCID: PMC4267978.
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    144. A 3D cellular context for the macromolecular world. Nat Struct Mol Biol. 2014 Oct; 21(10):841-5. Patwardhan A, Ashton A, Brandt R, Butcher S, Carzaniga R, Chiu W, Collinson L, Doux P, Duke E, Ellisman MH, Franken E, Grünewald K, Heriche JK, Koster A, Kühlbrandt W, Lagerstedt I, Larabell C, Lawson CL, Saibil HR, Sanz-García E, Subramaniam S, Verkade P, Swedlow JR, Kleywegt GJ. PMID: 25289590; PMCID: PMC4346196.
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    145. Mpl traffics to the cell surface through conventional and unconventional routes. Traffic. 2014 Sep; 15(9):961-82. Cleyrat C, Darehshouri A, Steinkamp MP, Vilaine M, Boassa D, Ellisman MH, Hermouet S, Wilson BS. PMID: 24931576; PMCID: PMC4141020.
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    146. TAK1-mediated autophagy and fatty acid oxidation prevent hepatosteatosis and tumorigenesis. J Clin Invest. 2014 Aug; 124(8):3566-78. Inokuchi-Shimizu S, Park EJ, Roh YS, Yang L, Zhang B, Song J, Liang S, Pimienta M, Taniguchi K, Wu X, Asahina K, Lagakos W, Mackey MR, Akira S, Ellisman MH, Sears DD, Olefsky JM, Karin M, Brenner DA, Seki E. PMID: 24983318; PMCID: PMC4109552.
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    147. Transcellular degradation of axonal mitochondria. Proc Natl Acad Sci U S A. 2014 Jul 01; 111(26):9633-8. Davis CH, Kim KY, Bushong EA, Mills EA, Boassa D, Shih T, Kinebuchi M, Phan S, Zhou Y, Bihlmeyer NA, Nguyen JV, Jin Y, Ellisman MH, Marsh-Armstrong N. PMID: 24979790; PMCID: PMC4084443.
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    148. Cerium oxide nanoparticles protect against Aβ-induced mitochondrial fragmentation and neuronal cell death. Cell Death Differ. 2014 Oct; 21(10):1622-32. Dowding JM, Song W, Bossy K, Karakoti A, Kumar A, Kim A, Bossy B, Seal S, Ellisman MH, Perkins G, Self WT, Bossy-Wetzel E. PMID: 24902900; PMCID: PMC4158687.
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    149. TIRF microscopy with ultra-short penetration depth. Opt Express. 2014 May 05; 22(9):10728-34. Shen H, Huang E, Das T, Xu H, Ellisman M, Liu Z. PMID: 24921774.
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    150. Conditions and constraints for astrocyte calcium signaling in the hippocampal mossy fiber pathway. Neuron. 2014 Apr 16; 82(2):413-29. Haustein MD, Kracun S, Lu XH, Shih T, Jackson-Weaver O, Tong X, Xu J, Yang XW, O'Dell TJ, Marvin JS, Ellisman MH, Bushong EA, Looger LL, Khakh BS. PMID: 24742463; PMCID: PMC4086217.
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    151. Vitrification of Tokuyasu-style immuno-labelled sections for correlative cryo light microscopy and cryo electron tomography. J Struct Biol. 2014 May; 186(2):273-82. Bos E, Hussaarts L, van Weering JR, Ellisman MH, de Wit H, Koster AJ. PMID: 24704216.
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    152. Coenzyme Q10 ameliorates oxidative stress and prevents mitochondrial alteration in ischemic retinal injury. Apoptosis. 2014 Apr; 19(4):603-14. Lee D, Kim KY, Shim MS, Kim SY, Ellisman MH, Weinreb RN, Ju WK. PMID: 24337820; PMCID: PMC3938850.
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    153. Improving signal to noise in labeled biological specimens using energy-filtered TEM of sections with a drift correction strategy and a direct detection device. Microsc Microanal. 2014 Jun; 20(3):706-14. Ramachandra R, Bouwer JC, Mackey MR, Bushong E, Peltier ST, Xuong NH, Ellisman MH. PMID: 24641915; PMCID: PMC4178974.
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    154. Specific disruption of hippocampal mossy fiber synapses in a mouse model of familial Alzheimer's disease. PLoS One. 2014; 9(1):e84349. Wilke SA, Raam T, Antonios JK, Bushong EA, Koo EH, Ellisman MH, Ghosh A. PMID: 24454724; PMCID: PMC3890281.
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    155. EPiK-a Workflow for Electron Tomography in Kepler. Procedia Comput Sci. 2014; 20:2295-2305. Chen R, Wan X, Altintas I, Wang J, Crawl D, Phan S, Lawrence A, Ellisman M. PMID: 25621086; PMCID: PMC4304086.
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    156. Liprin-α/SYD-2 determines the size of dense projections in presynaptic active zones in C. elegans. J Cell Biol. 2013 Dec 09; 203(5):849-63. Kittelmann M, Hegermann J, Goncharov A, Taru H, Ellisman MH, Richmond JE, Jin Y, Eimer S. PMID: 24322429; PMCID: PMC3857474.
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    157. Five chemically rich species of tropical marine cyanobacteria of the genus Okeania gen. nov. (Oscillatoriales, Cyanoprokaryota). J Phycol. 2013 Dec; 49(6):1095-106. Engene N, Paul VJ, Byrum T, Gerwick WH, Thor A, Ellisman MH. PMID: 27007630.
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    158. Inhibition of oxidative stress by coenzyme Q10 increases mitochondrial mass and improves bioenergetic function in optic nerve head astrocytes. Cell Death Dis. 2013 Oct 03; 4:e820. Noh YH, Kim KY, Shim MS, Choi SH, Choi S, Ellisman MH, Weinreb RN, Perkins GA, Ju WK. PMID: 24091663; PMCID: PMC3824651.
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    159. Quantitative proteomic and functional analysis of liver mitochondria from high fat diet (HFD) diabetic mice. Mol Cell Proteomics. 2013 Dec; 12(12):3744-58. Guo Y, Darshi M, Ma Y, Perkins GA, Shen Z, Haushalter KJ, Saito R, Chen A, Lee YS, Patel HH, Briggs SP, Ellisman MH, Olefsky JM, Taylor SS. PMID: 24030101; PMCID: PMC3861721.
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    160. Quantitative evaluation of the mitochondrial proteomes of Drosophila melanogaster adapted to extreme oxygen conditions. PLoS One. 2013; 8(9):e74011. Yin S, Xue J, Sun H, Wen B, Wang Q, Perkins G, Zhao HW, Ellisman MH, Hsiao YH, Yin L, Xie Y, Hou G, Zi J, Lin L, Haddad GG, Zhou D, Liu S. PMID: 24069262; PMCID: PMC3771901.
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    161. WATERSHED MERGE FOREST CLASSIFICATION FOR ELECTRON MICROSCOPY IMAGE STACK SEGMENTATION. Proc IEEE Int Conf Comput Vis. 2013 Sep; 2013:4069-4073. Liu T, Seyedhosseini M, Ellisman M, Tasdizen T. PMID: 25484631; PMCID: PMC4255959.
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    162. Molecular composition and ultrastructure of the caveolar coat complex. PLoS Biol. 2013; 11(8):e1001640. Ludwig A, Howard G, Mendoza-Topaz C, Deerinck T, Mackey M, Sandin S, Ellisman MH, Nichols BJ. PMID: 24013648; PMCID: PMC3754886.
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    163. Synaptic inputs compete during rapid formation of the calyx of Held: a new model system for neural development. J Neurosci. 2013 Aug 07; 33(32):12954-69. Holcomb PS, Hoffpauir BK, Hoyson MC, Jackson DR, Deerinck TJ, Marrs GS, Dehoff M, Wu J, Ellisman MH, Spirou GA. PMID: 23926251; PMCID: PMC3735879.
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    164. Nanoscale distribution of ryanodine receptors and caveolin-3 in mouse ventricular myocytes: dilation of t-tubules near junctions. Biophys J. 2013 Jun 04; 104(11):L22-4. Wong J, Baddeley D, Bushong EA, Yu Z, Ellisman MH, Hoshijima M, Soeller C. PMID: 23746531; PMCID: PMC3672889.
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    165. The cell-autonomous role of excitatory synaptic transmission in the regulation of neuronal structure and function. Neuron. 2013 May 08; 78(3):433-9. Lu W, Bushong EA, Shih TP, Ellisman MH, Nicoll RA. PMID: 23664612; PMCID: PMC3666354.
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    166. Imaging calcium microdomains within entire astrocyte territories and endfeet with GCaMPs expressed using adeno-associated viruses. J Gen Physiol. 2013 May; 141(5):633-47. Shigetomi E, Bushong EA, Haustein MD, Tong X, Jackson-Weaver O, Kracun S, Xu J, Sofroniew MV, Ellisman MH, Khakh BS. PMID: 23589582; PMCID: PMC3639581.
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    167. DP2: Distributed 3D image segmentation using micro-labor workforce. Bioinformatics. 2013 May 15; 29(10):1359-60. Giuly RJ, Kim KY, Ellisman MH. PMID: 23574738; PMCID: PMC3654713.
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    168. DIDS (4,4-diisothiocyanatostilbenedisulphonic acid) induces apoptotic cell death in a hippocampal neuronal cell line and is not neuroprotective against ischemic stress. PLoS One. 2013; 8(4):e60804. Pamenter ME, Perkins GA, Gu XQ, Ellisman MH, Haddad GG. PMID: 23577164; PMCID: PMC3618322.
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    169. Schwann cell LRP1 regulates remak bundle ultrastructure and axonal interactions to prevent neuropathic pain. J Neurosci. 2013 Mar 27; 33(13):5590-602. Orita S, Henry K, Mantuano E, Yamauchi K, De Corato A, Ishikawa T, Feltri ML, Wrabetz L, Gaultier A, Pollack M, Ellisman M, Takahashi K, Gonias SL, Campana WM. PMID: 23536074; PMCID: PMC3837698.
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    170. Abundant SAR11 viruses in the ocean. Nature. 2013 Feb 21; 494(7437):357-60. Zhao Y, Temperton B, Thrash JC, Schwalbach MS, Vergin KL, Landry ZC, Ellisman M, Deerinck T, Sullivan MB, Giovannoni SJ. PMID: 23407494.
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    171. Mapping the subcellular distribution of α-synuclein in neurons using genetically encoded probes for correlated light and electron microscopy: implications for Parkinson's disease pathogenesis. J Neurosci. 2013 Feb 06; 33(6):2605-15. Boassa D, Berlanga ML, Yang MA, Terada M, Hu J, Bushong EA, Hwang M, Masliah E, George JM, Ellisman MH. PMID: 23392688; PMCID: PMC3711410.
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    172. Construction of a polarized neuron. J Physiol. 2013 Jul 01; 591(13):3145-50. Holcomb PS, Deerinck TJ, Ellisman MH, Spirou GA. PMID: 23339176; PMCID: PMC3717217.
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    173. Deconstructing complexity: serial block-face electron microscopic analysis of the hippocampal mossy fiber synapse. J Neurosci. 2013 Jan 09; 33(2):507-22. Wilke SA, Antonios JK, Bushong EA, Badkoobehi A, Malek E, Hwang M, Terada M, Ellisman MH, Ghosh A. PMID: 23303931; PMCID: PMC3756657.
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    174. Semi-automated neuron boundary detection and nonbranching process segmentation in electron microscopy images. Neuroinformatics. 2013 Jan; 11(1):5-29. Jurrus E, Watanabe S, Giuly RJ, Paiva AR, Ellisman MH, Jorgensen EM, Tasdizen T. PMID: 22644867; PMCID: PMC3914654.
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    175. SEGMENTATION OF MITOCHONDRIA IN ELECTRON MICROSCOPY IMAGES USING ALGEBRAIC CURVES. Proc IEEE Int Symp Biomed Imaging. 2013; 2013:860-863. Seyedhosseini M, Ellisman MH, Tasdizen T. PMID: 25132915; PMCID: PMC4134132.
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    176. Semi-Automatic Neuron Segmentation in Electron Microscopy Images Via Sparse Labeling. Proc IEEE Int Symp Biomed Imaging. 2013; 2013:1304-1307. Jones C, Liu T, Ellisman M, Tasdizen T. PMID: 25143801; PMCID: PMC4136520.
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    177. Neuron Segmentation in Electron Microscopy Images Using Partial Differential Equations. Proc IEEE Int Symp Biomed Imaging. 2013; 2013:1457-1460. Jones C, Sayedhosseini M, Ellisman M, Tasdizen T. PMID: 25143802; PMCID: PMC4136503.
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    178. Bcl-xL-mediated remodeling of rod and cone synaptic mitochondria after postnatal lead exposure: electron microscopy, tomography and oxygen consumption. Mol Vis. 2012; 18:3029-48. Perkins GA, Scott R, Perez A, Ellisman MH, Johnson JE, Fox DA. PMID: 23288995; PMCID: PMC3534145.
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    179. Autophagy and apoptosis are differentially induced in neurons and astrocytes treated with an in vitro mimic of the ischemic penumbra. PLoS One. 2012; 7(12):e51469. Pamenter ME, Perkins GA, McGinness AK, Gu XQ, Ellisman MH, Haddad GG. PMID: 23251543; PMCID: PMC3520810.
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    180. Ceramide and its transport protein (CERT) contribute to deterioration of mitochondrial structure and function in aging oocytes. Mech Ageing Dev. 2013 Jan-Feb; 134(1-2):43-52. Kujjo LL, Acton BM, Perkins GA, Ellisman MH, D'Estaing SG, Casper RF, Jurisicova A, Perez GI. PMID: 23246342.
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    181. The cell: an image library-CCDB: a curated repository of microscopy data. Nucleic Acids Res. 2013 Jan; 41(Database issue):D1241-50. Orloff DN, Iwasa JH, Martone ME, Ellisman MH, Kane CM. PMID: 23203874; PMCID: PMC3531121.
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    182. Loss of OPA1 disturbs cellular calcium homeostasis and sensitizes for excitotoxicity. Cell Death Differ. 2013 Feb; 20(2):353-65. Kushnareva YE, Gerencser AA, Bossy B, Ju WK, White AD, Waggoner J, Ellisman MH, Perkins G, Bossy-Wetzel E. PMID: 23138851; PMCID: PMC3554330.
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    183. Watershed Merge Tree Classification for Electron Microscopy Image Segmentation. Proc IAPR Int Conf Pattern Recogn. 2012 Nov; 2012:133-137. Liu T, Jurrus E, Seyedhosseini M, Ellisman M, Tasdizen T. PMID: 25485310; PMCID: PMC4256108.
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    184. A small novel A-kinase anchoring protein (AKAP) that localizes specifically protein kinase A-regulatory subunit I (PKA-RI) to the plasma membrane. J Biol Chem. 2012 Dec 21; 287(52):43789-97. Burgers PP, Ma Y, Margarucci L, Mackey M, van der Heyden MA, Ellisman M, Scholten A, Taylor SS, Heck AJ. PMID: 23115245; PMCID: PMC3527963.
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    185. Fluorescent and photo-oxidizing TimeSTAMP tags track protein fates in light and electron microscopy. Nat Neurosci. 2012 Dec; 15(12):1742-51. Butko MT, Yang J, Geng Y, Kim HJ, Jeon NL, Shu X, Mackey MR, Ellisman MH, Tsien RY, Lin MZ. PMID: 23103964; PMCID: PMC3509268.
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    186. Engineered ascorbate peroxidase as a genetically encoded reporter for electron microscopy. Nat Biotechnol. 2012 Nov; 30(11):1143-8. Martell JD, Deerinck TJ, Sancak Y, Poulos TL, Mootha VK, Sosinsky GE, Ellisman MH, Ting AY. PMID: 23086203; PMCID: PMC3699407.
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    187. Dedifferentiation of neurons and astrocytes by oncogenes can induce gliomas in mice. Science. 2012 Nov 23; 338(6110):1080-4. Friedmann-Morvinski D, Bushong EA, Ke E, Soda Y, Marumoto T, Singer O, Ellisman MH, Verma IM. PMID: 23087000; PMCID: PMC3595315.
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    188. A structural basis for the assembly and functions of a viral polymer that inactivates multiple tumor suppressors. Cell. 2012 Oct 12; 151(2):304-19. Ou HD, Kwiatkowski W, Deerinck TJ, Noske A, Blain KY, Land HS, Soria C, Powers CJ, May AP, Shu X, Tsien RY, Fitzpatrick JA, Long JA, Ellisman MH, Choe S, O'Shea CC. PMID: 23063122; PMCID: PMC3681303.
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    189. Brimonidine blocks glutamate excitotoxicity-induced oxidative stress and preserves mitochondrial transcription factor a in ischemic retinal injury. PLoS One. 2012; 7(10):e47098. Lee D, Kim KY, Noh YH, Chai S, Lindsey JD, Ellisman MH, Weinreb RN, Ju WK. PMID: 23056591; PMCID: PMC3467218.
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    190. Ultrastructural modifications in the mitochondria of hypoxia-adapted Drosophila melanogaster. PLoS One. 2012; 7(9):e45344. Perkins G, Hsiao YH, Yin S, Tjong J, Tran MT, Lau J, Xue J, Liu S, Ellisman MH, Zhou D. PMID: 23028948; PMCID: PMC3446896.
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    191. Maintenance of metabolic homeostasis by Sestrin2 and Sestrin3. Cell Metab. 2012 Sep 05; 16(3):311-21. Lee JH, Budanov AV, Talukdar S, Park EJ, Park HL, Park HW, Bandyopadhyay G, Li N, Aghajan M, Jang I, Wolfe AM, Perkins GA, Ellisman MH, Bier E, Scadeng M, Foretz M, Viollet B, Olefsky J, Karin M. PMID: 22958918; PMCID: PMC3687365.
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    192. DIDS prevents ischemic membrane degradation in cultured hippocampal neurons by inhibiting matrix metalloproteinase release. PLoS One. 2012; 7(8):e43995. Pamenter ME, Ryu J, Hua ST, Perkins GA, Mendiola VL, Gu XQ, Ellisman MH, Haddad GG. PMID: 22937143; PMCID: PMC3427179.
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    193. Electron tomographic analysis of synaptic ultrastructure. J Comp Neurol. 2012 Aug 15; 520(12):2697-711. Burette AC, Lesperance T, Crum J, Martone M, Volkmann N, Ellisman MH, Weinberg RJ. PMID: 22684938; PMCID: PMC3856703.
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    194. Inherited genetic variants in autism-related CNTNAP2 show perturbed trafficking and ATF6 activation. Hum Mol Genet. 2012 Nov 01; 21(21):4761-73. Falivelli G, De Jaco A, Favaloro FL, Kim H, Wilson J, Dubi N, Ellisman MH, Abrahams BS, Taylor P, Comoletti D. PMID: 22872700; PMCID: PMC3471401.
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    195. TxBR montage reconstruction for large field electron tomography. J Struct Biol. 2012 Oct; 180(1):154-64. Phan S, Lawrence A, Molina T, Lanman J, Berlanga M, Terada M, Kulungowski A, Obayashi J, Ellisman M. PMID: 22749959.
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    196. Time-restricted feeding without reducing caloric intake prevents metabolic diseases in mice fed a high-fat diet. Cell Metab. 2012 Jun 06; 15(6):848-60. Hatori M, Vollmers C, Zarrinpar A, DiTacchio L, Bushong EA, Gill S, Leblanc M, Chaix A, Joens M, Fitzpatrick JA, Ellisman MH, Panda S. PMID: 22608008; PMCID: PMC3491655.
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    197. Striated organelle, a cytoskeletal structure positioned to modulate hair-cell transduction. Proc Natl Acad Sci U S A. 2012 Mar 20; 109(12):4473-8. Vranceanu F, Perkins GA, Terada M, Chidavaenzi RL, Ellisman MH, Lysakowski A. PMID: 22396594; PMCID: PMC3311375.
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    198. Method: automatic segmentation of mitochondria utilizing patch classification, contour pair classification, and automatically seeded level sets. BMC Bioinformatics. 2012 Feb 09; 13:29. Giuly RJ, Martone ME, Ellisman MH. PMID: 22321695; PMCID: PMC3293777.
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    199. Picking faces out of a crowd: genetic labels for identification of proteins in correlated light and electron microscopy imaging. Methods Cell Biol. 2012; 111:139-55. Ellisman MH, Deerinck TJ, Shu X, Sosinsky GE. PMID: 22857927; PMCID: PMC3532940.
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    200. Fibrinogen-induced perivascular microglial clustering is required for the development of axonal damage in neuroinflammation. Nat Commun. 2012; 3:1227. Davalos D, Ryu JK, Merlini M, Baeten KM, Le Moan N, Petersen MA, Deerinck TJ, Smirnoff DS, Bedard C, Hakozaki H, Gonias Murray S, Ling JB, Lassmann H, Degen JL, Ellisman MH, Akassoglou K. PMID: 23187627; PMCID: PMC3514498.
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    201. Prototype of Kepler Processing Workflows For Microscopy And Neuroinformatics. Procedia Comput Sci. 2012; 9:1595-1603. Astakhov V, Bandrowski A, Gupta A, Kulungowski AW, Grethe JS, Bouwer J, Molina T, Rowley V, Penticoff S, Terada M, Wong W, Hakozaki H, Kwon O, Martone ME, Ellisman M. PMID: 28479932; PMCID: PMC5415345.
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    202. A new vicious cycle involving glutamate excitotoxicity, oxidative stress and mitochondrial dynamics. Cell Death Dis. 2011 Dec 08; 2:e240. Nguyen D, Alavi MV, Kim KY, Kang T, Scott RT, Noh YH, Lindsey JD, Wissinger B, Ellisman MH, Weinreb RN, Perkins GA, Ju WK. PMID: 22158479; PMCID: PMC3252734.
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    203. LRRK2 Parkinson disease mutations enhance its microtubule association. Hum Mol Genet. 2012 Feb 15; 21(4):890-9. Kett LR, Boassa D, Ho CC, Rideout HJ, Hu J, Terada M, Ellisman M, Dauer WT. PMID: 22080837; PMCID: PMC3263991.
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    204. Efficient elimination of cancer cells by deoxyglucose-ABT-263/737 combination therapy. PLoS One. 2011; 6(9):e24102. Yamaguchi R, Janssen E, Perkins G, Ellisman M, Kitada S, Reed JC. PMID: 21949692; PMCID: PMC3176271.
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    205. Initial evaluation of a direct detection device detector for single particle cryo-electron microscopy. J Struct Biol. 2011 Dec; 176(3):404-8. Milazzo AC, Cheng A, Moeller A, Lyumkis D, Jacovetty E, Polukas J, Ellisman MH, Xuong NH, Carragher B, Potter CS. PMID: 21933715; PMCID: PMC3210420.
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    206. Development of a method for the purification and culture of rodent astrocytes. Neuron. 2011 Sep 08; 71(5):799-811. Foo LC, Allen NJ, Bushong EA, Ventura PB, Chung WS, Zhou L, Cahoy JD, Daneman R, Zong H, Ellisman MH, Barres BA. PMID: 21903074; PMCID: PMC3172573.
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    207. Cadherin-9 regulates synapse-specific differentiation in the developing hippocampus. Neuron. 2011 Aug 25; 71(4):640-55. Williams ME, Wilke SA, Daggett A, Davis E, Otto S, Ravi D, Ripley B, Bushong EA, Ellisman MH, Klein G, Ghosh A. PMID: 21867881; PMCID: PMC3272880.
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    208. Multiple clusters of release sites formed by individual thalamic afferents onto cortical interneurons ensure reliable transmission. Neuron. 2011 Jul 14; 71(1):180-94. Bagnall MW, Hull C, Bushong EA, Ellisman MH, Scanziani M. PMID: 21745647; PMCID: PMC3271052.
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    209. Moorea producens gen. nov., sp. nov. and Moorea bouillonii comb. nov., tropical marine cyanobacteria rich in bioactive secondary metabolites. Int J Syst Evol Microbiol. 2012 May; 62(Pt 5):1171-1178. Engene N, Rottacker EC, Kaštovský J, Byrum T, Choi H, Ellisman MH, Komárek J, Gerwick WH. PMID: 21724952; PMCID: PMC3542135.
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    210. A selective inhibitor of drp1, mdivi-1, increases retinal ganglion cell survival in acute ischemic mouse retina. Invest Ophthalmol Vis Sci. 2011 Apr; 52(5):2837-43. Park SW, Kim KY, Lindsey JD, Dai Y, Heo H, Nguyen DH, Ellisman MH, Weinreb RN, Ju WK. PMID: 21372007; PMCID: PMC3088566.
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    211. Isoform-specific targeting of PKA to multivesicular bodies. J Cell Biol. 2011 Apr 18; 193(2):347-63. Day ME, Gaietta GM, Sastri M, Koller A, Mackey MR, Scott JD, Perkins GA, Ellisman MH, Taylor SS. PMID: 21502359; PMCID: PMC3080257.
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    212. Inducible nitric oxide synthase-mediated alteration of mitochondrial OPA1 expression in ocular hypertensive rats. Invest Ophthalmol Vis Sci. 2011 Apr 16; 52(5):2468-76. Dai Y, Weinreb RN, Kim KY, Nguyen D, Park S, Sun X, Lindsey JD, Ellisman MH, Ju WK. PMID: 21220562; PMCID: PMC3088543.
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    213. Underestimated biodiversity as a major explanation for the perceived rich secondary metabolite capacity of the cyanobacterial genus Lyngbya. Environ Microbiol. 2011 Jun; 13(6):1601-10. Engene N, Choi H, Esquenazi E, Rottacker EC, Ellisman MH, Dorrestein PC, Gerwick WH. PMID: 21477107; PMCID: PMC3131211.
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    214. A genetically encoded tag for correlated light and electron microscopy of intact cells, tissues, and organisms. PLoS Biol. 2011 Apr; 9(4):e1001041. Shu X, Lev-Ram V, Deerinck TJ, Qi Y, Ramko EB, Davidson MW, Jin Y, Ellisman MH, Tsien RY. PMID: 21483721; PMCID: PMC3071375.
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    215. Multiscale imaging characterization of dopamine transporter knockout mice reveals regional alterations in spine density of medium spiny neurons. Brain Res. 2011 May 16; 1390:41-9. Berlanga ML, Price DL, Phung BS, Giuly R, Terada M, Yamada N, Cyr M, Caron MG, Laakso A, Martone ME, Ellisman MH. PMID: 21439946; PMCID: PMC3104025.
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    216. Three-dimensional reconstruction of serial mouse brain sections: solution for flattening high-resolution large-scale mosaics. Front Neuroanat. 2011; 5:17. Berlanga ML, Phan S, Bushong EA, Wu S, Kwon O, Phung BS, Lamont S, Terada M, Tasdizen T, Martone ME, Ellisman MH. PMID: 21629828; PMCID: PMC3096995.
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    217. Mutant huntingtin binds the mitochondrial fission GTPase dynamin-related protein-1 and increases its enzymatic activity. Nat Med. 2011 Mar; 17(3):377-82. Song W, Chen J, Petrilli A, Liot G, Klinglmayr E, Zhou Y, Poquiz P, Tjong J, Pouladi MA, Hayden MR, Masliah E, Ellisman M, Rouiller I, Schwarzenbacher R, Bossy B, Perkins G, Bossy-Wetzel E. PMID: 21336284; PMCID: PMC3051025.
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    218. Investigating synapse formation and function using human pluripotent stem cell-derived neurons. Proc Natl Acad Sci U S A. 2011 Feb 15; 108(7):3005-10. Kim JE, O'Sullivan ML, Sanchez CA, Hwang M, Israel MA, Brennand K, Deerinck TJ, Goldstein LS, Gage FH, Ellisman MH, Ghosh A. PMID: 21278334; PMCID: PMC3041068.
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    219. Myelination transition zone astrocytes are constitutively phagocytic and have synuclein dependent reactivity in glaucoma. Proc Natl Acad Sci U S A. 2011 Jan 18; 108(3):1176-81. Nguyen JV, Soto I, Kim KY, Bushong EA, Oglesby E, Valiente-Soriano FJ, Yang Z, Davis CH, Bedont JL, Son JL, Wei JO, Buchman VL, Zack DJ, Vidal-Sanz M, Ellisman MH, Marsh-Armstrong N. PMID: 21199938; PMCID: PMC3024691.
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    220. Correlated live cell light and electron microscopy using tetracysteine tags and biarsenicals. Cold Spring Harb Protoc. 2011 Jan 01; 2011(1):pdb.top94. Gaietta GM, Deerinck TJ, Ellisman MH. PMID: 21205860.
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    221. Fluorescence photoconversion of biarsenical-labeled cells for correlated electron microscopy (EM). Cold Spring Harb Protoc. 2011 Jan 01; 2011(1):pdb.prot5548. Gaietta GM, Deerinck TJ, Ellisman MH. PMID: 21205848.
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    222. Labeling tetracysteine-tagged proteins with biarsenical dyes for live cell imaging. Cold Spring Harb Protoc. 2011 Jan 01; 2011(1):pdb.prot5547. Gaietta GM, Deerinck TJ, Ellisman MH. PMID: 21205847.
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    223. Detection of neuron membranes in electron microscopy images using multi-scale context and radon-like features. Med Image Comput Comput Assist Interv. 2011; 14(Pt 1):670-7. Seyedhosseini M, Kumar R, Jurrus E, Giuly R, Ellisman M, Pfister H, Tasdizen T. PMID: 22003676; PMCID: PMC3343875.
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    224. Spiers Memorial Lecture. Breeding and building molecular spies. Faraday Discuss. 2011; 149:9; discussion 63-77. Shu X, Lev-Ram V, Olson ES, Aguilera TA, Jiang T, Whitney M, Crisp JL, Steinbach P, Deerinck T, Ellisman MH, Ellies LG, Nguyen QT, Tsien RY. PMID: 21413170.
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    225. Mitochondrial rejuvenation after induced pluripotency. PLoS One. 2010 Nov 23; 5(11):e14095. Suhr ST, Chang EA, Tjong J, Alcasid N, Perkins GA, Goissis MD, Ellisman MH, Perez GI, Cibelli JB. PMID: 21124794; PMCID: PMC2991355.
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    226. Alterations in mGluR5 expression and signaling in Lewy body disease and in transgenic models of alpha-synucleinopathy--implications for excitotoxicity. PLoS One. 2010 Nov 16; 5(11):e14020. Price DL, Rockenstein E, Ubhi K, Phung V, MacLean-Lewis N, Askay D, Cartier A, Spencer B, Patrick C, Desplats P, Ellisman MH, Masliah E. PMID: 21103359; PMCID: PMC2982819.
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    227. ChChd3, an inner mitochondrial membrane protein, is essential for maintaining crista integrity and mitochondrial function. J Biol Chem. 2011 Jan 28; 286(4):2918-32. Darshi M, Mendiola VL, Mackey MR, Murphy AN, Koller A, Perkins GA, Ellisman MH, Taylor SS. PMID: 21081504; PMCID: PMC3024787.
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    228. Community cyberinfrastructure for Advanced Microbial Ecology Research and Analysis: the CAMERA resource. Nucleic Acids Res. 2011 Jan; 39(Database issue):D546-51. Sun S, Chen J, Li W, Altintas I, Lin A, Peltier S, Stocks K, Allen EE, Ellisman M, Grethe J, Wooley J. PMID: 21045053; PMCID: PMC3013694.
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    229. Delta-sarcoglycan gene therapy halts progression of cardiac dysfunction, improves respiratory failure, and prolongs life in myopathic hamsters. Circ Heart Fail. 2011 Jan; 4(1):89-97. Hoshijima M, Hayashi T, Jeon YE, Fu Z, Gu Y, Dalton ND, Ellisman MH, Xiao X, Powell FL, Ross J. PMID: 21036890; PMCID: PMC3742303.
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    230. Fluorescent labeling of tetracysteine-tagged proteins in intact cells. Nat Protoc. 2010 Sep; 5(10):1666-77. Hoffmann C, Gaietta G, Zürn A, Adams SR, Terrillon S, Ellisman MH, Tsien RY, Lohse MJ. PMID: 20885379; PMCID: PMC3086663.
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    231. Roles of KChIP1 in the regulation of GABA-mediated transmission and behavioral anxiety. Mol Brain. 2010 Aug 02; 3:23. Xia K, Xiong H, Shin Y, Wang D, Deerinck T, Takahashi H, Ellisman MH, Lipton SA, Tong G, Descalzi G, Zhang D, Zhuo M, Zhang Z. PMID: 20678225; PMCID: PMC2927585.
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    232. Increased optic atrophy type 1 expression protects retinal ganglion cells in a mouse model of glaucoma. Mol Vis. 2010 Jul 15; 16:1331-42. Ju WK, Kim KY, Duong-Polk KX, Lindsey JD, Ellisman MH, Weinreb RN. PMID: 20664796; PMCID: PMC2905637.
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    233. Neuroligin trafficking deficiencies arising from mutations in the alpha/beta-hydrolase fold protein family. J Biol Chem. 2010 Sep 10; 285(37):28674-82. De Jaco A, Lin MZ, Dubi N, Comoletti D, Miller MT, Camp S, Ellisman M, Butko MT, Tsien RY, Taylor P. PMID: 20615874; PMCID: PMC2937894.
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    234. Mitochondrial configurations in peripheral nerve suggest differential ATP production. J Struct Biol. 2011 Jan; 173(1):117-27. Perkins GA, Ellisman MH. PMID: 20600951; PMCID: PMC3078762.
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    235. Ultrastructural characterization of the optic pathway in a mouse model of neurofibromatosis-1 optic glioma. Neuroscience. 2010 Sep 29; 170(1):178-88. Kim KY, Ju WK, Hegedus B, Gutmann DH, Ellisman MH. PMID: 20600672; PMCID: PMC2926211.
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    236. A molecular mechanism underlying the neural-specific defect in torsinA mutant mice. Proc Natl Acad Sci U S A. 2010 May 25; 107(21):9861-6. Kim CE, Perez A, Perkins G, Ellisman MH, Dauer WT. PMID: 20457914; PMCID: PMC2906867.
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    237. Characterization of a direct detection device imaging camera for transmission electron microscopy. Ultramicroscopy. 2010 Jun; 110(7):744-7. Milazzo AC, Moldovan G, Lanman J, Jin L, Bouwer JC, Klienfelder S, Peltier ST, Ellisman MH, Kirkland AI, Xuong NH. PMID: 20382479; PMCID: PMC2923635.
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    238. Sestrin as a feedback inhibitor of TOR that prevents age-related pathologies. Science. 2010 Mar 05; 327(5970):1223-8. Lee JH, Budanov AV, Park EJ, Birse R, Kim TE, Perkins GA, Ocorr K, Ellisman MH, Bodmer R, Bier E, Karin M. PMID: 20203043; PMCID: PMC2866632.
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    239. Direct restriction of virus release and incorporation of the interferon-induced protein BST-2 into HIV-1 particles. PLoS Pathog. 2010 Mar 05; 6(3):e1000701. Fitzpatrick K, Skasko M, Deerinck TJ, Crum J, Ellisman MH, Guatelli J. PMID: 20221443; PMCID: PMC2832767.
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    240. Contribution of the global subunit structure and stargazin on the maturation of AMPA receptors. J Neurosci. 2010 Feb 17; 30(7):2728-40. Shanks NF, Maruo T, Farina AN, Ellisman MH, Nakagawa T. PMID: 20164357; PMCID: PMC2842908.
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    241. Caulobacter PopZ forms a polar subdomain dictating sequential changes in pole composition and function. Mol Microbiol. 2010 Apr; 76(1):173-89. Bowman GR, Comolli LR, Gaietta GM, Fero M, Hong SH, Jones Y, Lee JH, Downing KH, Ellisman MH, McAdams HH, Shapiro L. PMID: 20149103; PMCID: PMC2935252.
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    242. The micro-architecture of mitochondria at active zones: electron tomography reveals novel anchoring scaffolds and cristae structured for high-rate metabolism. J Neurosci. 2010 Jan 20; 30(3):1015-26. Perkins GA, Tjong J, Brown JM, Poquiz PH, Scott RT, Kolson DR, Ellisman MH, Spirou GA. PMID: 20089910; PMCID: PMC2829299.
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    243. Structure-function studies of blood and air capillaries in chicken lung using 3D electron microscopy. Respir Physiol Neurobiol. 2010 Feb 28; 170(2):202-9. West JB, Fu Z, Deerinck TJ, Mackey MR, Obayashi JT, Ellisman MH. PMID: 20038456; PMCID: PMC2821748.
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    244. Comparative, three-dimensional anterior sensory reconstruction of Aphelenchus avenae (nematoda: Tylenchomorpha). J Comp Neurol. 2009 Dec 10; 517(5):616-32. Ragsdale EJ, Ngo PT, Crum J, Ellisman MH, Baldwin JG. PMID: 19824103.
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    245. Ultrasound enhanced endocytotic activity of human fibroblasts. Ultrasound Med Biol. 2009 Dec; 35(12):2084-92. Hauser J, Ellisman M, Steinau HU, Stefan E, Dudda M, Hauser M. PMID: 19828232.
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    246. The OptIPuter microscopy demonstrator: enabling science through a transatlantic lightpath. Philos Trans A Math Phys Eng Sci. 2009 Jul 13; 367(1898):2645-53. Ellisman M, Hutton T, Kirkland A, Lin A, Lin C, Molina T, Peltier S, Singh R, Tang K, Trefethen AE, Wallom DC, Xiong X. PMID: 19487201; PMCID: PMC3268213.
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    247. New insights into mitochondrial structure during cell death. Exp Neurol. 2009 Aug; 218(2):183-92. Perkins G, Bossy-Wetzel E, Ellisman MH. PMID: 19464290; PMCID: PMC2712651.
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    248. Optic nerve dysfunction in a mouse model of neurofibromatosis-1 optic glioma. J Neuropathol Exp Neurol. 2009 May; 68(5):542-51. Hegedus B, Hughes FW, Garbow JR, Gianino S, Banerjee D, Kim K, Ellisman MH, Brantley MA, Gutmann DH. PMID: 19525901; PMCID: PMC2746323.
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    249. Three-dimensional electron microscopy reveals new details of membrane systems for Ca2+ signaling in the heart. J Cell Sci. 2009 Apr 01; 122(Pt 7):1005-13. Hayashi T, Martone ME, Yu Z, Thor A, Doi M, Holst MJ, Ellisman MH, Hoshijima M. PMID: 19295127; PMCID: PMC2720931.
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    250. Phosphorylation of highly conserved neurofilament medium KSP repeats is not required for myelin-dependent radial axonal growth. J Neurosci. 2009 Feb 04; 29(5):1277-84. Garcia ML, Rao MV, Fujimoto J, Garcia VB, Shah SB, Crum J, Gotow T, Uchiyama Y, Ellisman M, Calcutt NA, Cleveland DW. PMID: 19193875; PMCID: PMC2782950.
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    251. Electron tomography, three-dimensional Fourier analysis and colour prediction of a three-dimensional amorphous biophotonic nanostructure. J R Soc Interface. 2009 Apr 06; 6 Suppl 2:S213-20. Shawkey MD, Saranathan V, Pálsdóttir H, Crum J, Ellisman MH, Auer M, Prum RO. PMID: 19158016; PMCID: PMC2706473.
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    252. Elevated hydrostatic pressure triggers release of OPA1 and cytochrome C, and induces apoptotic cell death in differentiated RGC-5 cells. Mol Vis. 2009; 15:120-34. Ju WK, Kim KY, Lindsey JD, Angert M, Patel A, Scott RT, Liu Q, Crowston JG, Ellisman MH, Perkins GA, Weinreb RN. PMID: 19169378; PMCID: PMC2629709.
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    253. Three-dimensional reconstruction of the amphid sensilla in the microbial feeding nematode, Acrobeles complexus (Nematoda: Rhabditida). J Comp Neurol. 2009 Jan 10; 512(2):271-81. Bumbarger DJ, Wijeratne S, Carter C, Crum J, Ellisman MH, Baldwin JG. PMID: 19003904; PMCID: PMC2750866.
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    254. The Neuroimaging Informatics Tools and Resources Clearinghouse (NITRC). AMIA Annu Symp Proc. 2008 Nov 06; 1000. Buccigrossi R, Ellisman M, Grethe J, Haselgrove C, Kennedy DN, Martone M, Preuss N, Reynolds K, Sullivan M, Turner J, Wagner K. PMID: 18999128.
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    255. Memantine blocks mitochondrial OPA1 and cytochrome c release and subsequent apoptotic cell death in glaucomatous retina. Invest Ophthalmol Vis Sci. 2009 Feb; 50(2):707-16. Ju WK, Kim KY, Angert M, Duong-Polk KX, Lindsey JD, Ellisman MH, Weinreb RN. PMID: 18936150; PMCID: PMC2678967.
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    256. Three-dimensional reconstruction of the stomatostylet and anterior epidermis in the nematode Aphelenchus avenae (Nematoda: Aphelenchidae) with implications for the evolution of plant parasitism. J Morphol. 2008 Oct; 269(10):1181-96. Ragsdale EJ, Crum J, Ellisman MH, Baldwin JG. PMID: 18570305; PMCID: PMC2730191.
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    257. Quantum dots for tracking dendritic cells and priming an immune response in vitro and in vivo. PLoS One. 2008 Sep 29; 3(9):e3290. Sen D, Deerinck TJ, Ellisman MH, Parker I, Cahalan MD. PMID: 18820727; PMCID: PMC2538605.
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    258. Three-dimensional geometric modeling of membrane-bound organelles in ventricular myocytes: bridging the gap between microscopic imaging and mathematical simulation. J Struct Biol. 2008 Dec; 164(3):304-13. Yu Z, Holst MJ, Hayashi T, Bajaj CL, Ellisman MH, McCammon JA, Hoshijima M. PMID: 18835449; PMCID: PMC2790379.
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    259. Opa1-mediated cristae opening is Bax/Bak and BH3 dependent, required for apoptosis, and independent of Bak oligomerization. Mol Cell. 2008 Aug 22; 31(4):557-569. Yamaguchi R, Lartigue L, Perkins G, Scott RT, Dixit A, Kushnareva Y, Kuwana T, Ellisman MH, Newmeyer DD. PMID: 18691924; PMCID: PMC2636708.
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    260. Computational modeling of three-dimensional electrodiffusion in biological systems: application to the node of Ranvier. Biophys J. 2008 Sep 15; 95(6):2624-35. Lopreore CL, Bartol TM, Coggan JS, Keller DX, Sosinsky GE, Ellisman MH, Sejnowski TJ. PMID: 18556758; PMCID: PMC2527256.
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    261. Intraocular pressure elevation induces mitochondrial fission and triggers OPA1 release in glaucomatous optic nerve. Invest Ophthalmol Vis Sci. 2008 Nov; 49(11):4903-11. Ju WK, Kim KY, Lindsey JD, Angert M, Duong-Polk KX, Scott RT, Kim JJ, Kukhmazov I, Ellisman MH, Perkins GA, Weinreb RN. PMID: 18469184; PMCID: PMC2688012.
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    262. A tridimensional view of the organization of actin filaments in the central nervous system by use of fluorescent photooxidation. Biocell. 2008 Apr; 32(1):1-8. Capani F, Saraceno E, Boti VR, Aon-Bertolino L, Fernández JC, Gato F, Kruse MS, Krause MS, Giraldez L, Ellisman MH, Coirini H. PMID: 18669318.
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    263. The 4th International Conference on Electron Tomography. J Struct Biol. 2008 Mar; 161(3):219. Marko M, Ellisman M, Medalia O. PMID: 19255594; PMCID: PMC2289908.
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    264. Segmentation of electron tomographic data sets using fuzzy set theory principles. J Struct Biol. 2008 Jun; 162(3):368-79. Garduño E, Wong-Barnum M, Volkmann N, Ellisman MH. PMID: 18358741; PMCID: PMC2494597.
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    265. An adenoviral platform for selective self-assembly and targeted delivery of nanoparticles. Small. 2008 Feb; 4(2):262-9. Saini V, Martyshkin DV, Mirov SB, Perez A, Perkins G, Ellisman MH, Towner VD, Wu H, Pereboeva L, Borovjagin A, Curiel DT, Everts M. PMID: 18200644.
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    266. Regulation of spine morphology and spine density by NMDA receptor signaling in vivo. Proc Natl Acad Sci U S A. 2007 Dec 04; 104(49):19553-8. Ultanir SK, Kim JE, Hall BJ, Deerinck T, Ellisman M, Ghosh A. PMID: 18048342; PMCID: PMC2148327.
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    267. Stable in vivo imaging of densely populated glia, axons and blood vessels in the mouse spinal cord using two-photon microscopy. J Neurosci Methods. 2008 Mar 30; 169(1):1-7. Davalos D, Lee JK, Smith WB, Brinkman B, Ellisman MH, Zheng B, Akassoglou K. PMID: 18192022; PMCID: PMC2647134.
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    268. Applications of direct detection device in transmission electron microscopy. J Struct Biol. 2008 Mar; 161(3):352-8. Jin L, Milazzo AC, Kleinfelder S, Li S, Leblanc P, Duttweiler F, Bouwer JC, Peltier ST, Ellisman MH, Xuong NH. PMID: 18054249; PMCID: PMC2359769.
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    269. Electron tomographic analysis of cytoskeletal cross-bridges in the paranodal region of the node of Ranvier in peripheral nerves. J Struct Biol. 2008 Mar; 161(3):469-80. Perkins GA, Sosinsky GE, Ghassemzadeh S, Perez A, Jones Y, Ellisman MH. PMID: 18096402; PMCID: PMC2346545.
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    270. The cell centered database project: an update on building community resources for managing and sharing 3D imaging data. J Struct Biol. 2008 Mar; 161(3):220-31. Martone ME, Tran J, Wong WW, Sargis J, Fong L, Larson S, Lamont SP, Gupta A, Ellisman MH. PMID: 18054501; PMCID: PMC2367257.
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    271. Visualizing flock house virus infection in Drosophila cells with correlated fluorescence and electron microscopy. J Struct Biol. 2008 Mar; 161(3):439-46. Lanman J, Crum J, Deerinck TJ, Gaietta GM, Schneemann A, Sosinsky GE, Ellisman MH, Johnson JE. PMID: 17998167; PMCID: PMC2408891.
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    272. The combination of chemical fixation procedures with high pressure freezing and freeze substitution preserves highly labile tissue ultrastructure for electron tomography applications. J Struct Biol. 2008 Mar; 161(3):359-71. Sosinsky GE, Crum J, Jones YZ, Lanman J, Smarr B, Terada M, Martone ME, Deerinck TJ, Johnson JE, Ellisman MH. PMID: 17962040; PMCID: PMC2459253.
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    273. Isoform-specific PKA dynamics revealed by dye-triggered aggregation and DAKAP1alpha-mediated localization in living cells. Chem Biol. 2007 Sep; 14(9):1031-42. Martin BR, Deerinck TJ, Ellisman MH, Taylor SS, Tsien RY. PMID: 17884635.
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    274. Three-dimensional analysis of a viral RNA replication complex reveals a virus-induced mini-organelle. PLoS Biol. 2007 Sep; 5(9):e220. Kopek BG, Perkins G, Miller DJ, Ellisman MH, Ahlquist P. PMID: 17696647; PMCID: PMC1945040.
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    275. Correlated three-dimensional light and electron microscopy reveals transformation of mitochondria during apoptosis. Nat Cell Biol. 2007 Sep; 9(9):1057-65. Sun MG, Williams J, Munoz-Pinedo C, Perkins GA, Brown JM, Ellisman MH, Green DR, Frey TG. PMID: 17721514.
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    276. Three-dimensional fine structural reconstruction of the nose sensory structures of Acrobeles complexus compared to Caenorhabditis elegans (Nematoda: Rhabditida). J Morphol. 2007 Aug; 268(8):649-63. Bumbarger DJ, Crum J, Ellisman MH, Baldwin JG. PMID: 17514723.
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    277. Distribution of Kv3.3 potassium channel subunits in distinct neuronal populations of mouse brain. J Comp Neurol. 2007 Jun 20; 502(6):953-72. Chang SY, Zagha E, Kwon ES, Ozaita A, Bobik M, Martone ME, Ellisman MH, Heintz N, Rudy B. PMID: 17444489.
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    278. Spatiotemporal regulation of ATP and Ca2+ dynamics in vertebrate rod and cone ribbon synapses. Mol Vis. 2007 Jun 15; 13:887-919. Johnson JE, Perkins GA, Giddabasappa A, Chaney S, Xiao W, White AD, Brown JM, Waggoner J, Ellisman MH, Fox DA. PMID: 17653034; PMCID: PMC2774461.
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    279. Synapse formation on neurons born in the adult hippocampus. Nat Neurosci. 2007 Jun; 10(6):727-34. Toni N, Teng EM, Bushong EA, Aimone JB, Zhao C, Consiglio A, van Praag H, Martone ME, Ellisman MH, Gage FH. PMID: 17486101.
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    280. Spinophilin facilitates dephosphorylation of doublecortin by PP1 to mediate microtubule bundling at the axonal wrist. Cell. 2007 May 04; 129(3):579-91. Bielas SL, Serneo FF, Chechlacz M, Deerinck TJ, Perkins GA, Allen PB, Ellisman MH, Gleeson JG. PMID: 17482550; PMCID: PMC1920181.
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    281. Elevated hydrostatic pressure triggers mitochondrial fission and decreases cellular ATP in differentiated RGC-5 cells. Invest Ophthalmol Vis Sci. 2007 May; 48(5):2145-51. Ju WK, Liu Q, Kim KY, Crowston JG, Lindsey JD, Agarwal N, Ellisman MH, Perkins GA, Weinreb RN. PMID: 17460273.
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    282. The NIEHS Environmental Health Sciences Data Resource Portal: placing advanced technologies in service to vulnerable communities. Environ Health Perspect. 2007 Apr; 115(4):564-71. Pezzoli K, Tukey R, Sarabia H, Zaslavsky I, Miranda ML, Suk WA, Lin A, Ellisman M. PMID: 17450225; PMCID: PMC1852670.
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    283. The application of energy-filtered electron microscopy to tomography of thick, selectively stained biological samples. Methods Cell Biol. 2007; 79:643-60. Bouwer JC, Mackey MR, Lawrence A, Deerinck TJ, Jones YZ, Terada M, Martone ME, Peltier ST, Ellisman MH. PMID: 17327179.
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    284. Future directions for camera systems in electron microscopy. Methods Cell Biol. 2007; 79:721-39. Xuong NH, Jin L, Kleinfelder S, Li S, Leblanc P, Duttweiler F, Bouwer JC, Peltier ST, Milazzo AC, Ellisman M. PMID: 17327181.
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    285. Toxicity of Cr(lll) to Shewanella sp. strain MR-4 during Cr(VI) reduction. Environ Sci Technol. 2007 Jan 01; 41(1):214-20. Bencheikh-Latmani R, Obraztsova A, Mackey MR, Ellisman MH, Tebo BM. PMID: 17265950.
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    286. Light and electron microscopic localization of multiple proteins using quantum dots. Methods Mol Biol. 2007; 374:43-53. Deerinck TJ, Giepmans BN, Smarr BL, Martone ME, Ellisman MH. PMID: 17237528.
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    287. Markers for correlated light and electron microscopy. Methods Cell Biol. 2007; 79:575-91. Sosinsky GE, Giepmans BN, Deerinck TJ, Gaietta GM, Ellisman MH. PMID: 17327175.
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    288. Golgi twins in late mitosis revealed by genetically encoded tags for live cell imaging and correlated electron microscopy. Proc Natl Acad Sci U S A. 2006 Nov 21; 103(47):17777-82. Gaietta GM, Giepmans BN, Deerinck TJ, Smith WB, Ngan L, Llopis J, Adams SR, Tsien RY, Ellisman MH. PMID: 17101980; PMCID: PMC1635977.
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    289. Redefining the concept of reactive astrocytes as cells that remain within their unique domains upon reaction to injury. Proc Natl Acad Sci U S A. 2006 Nov 14; 103(46):17513-8. Wilhelmsson U, Bushong EA, Price DL, Smarr BL, Phung V, Terada M, Ellisman MH, Pekny M. PMID: 17090684; PMCID: PMC1859960.
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    290. Three-dimensional reconstruction of the nose epidermal cells in the microbial feeding nematode, Acrobeles complexus (Nematoda: Rhabditida). J Morphol. 2006 Nov; 267(11):1257-72. Bumbarger DJ, Crum J, Ellisman MH, Baldwin JG. PMID: 16710857.
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    291. Mitochondrial fission is an upstream and required event for bax foci formation in response to nitric oxide in cortical neurons. Cell Death Differ. 2007 Mar; 14(3):462-71. Yuan H, Gerencser AA, Liot G, Lipton SA, Ellisman M, Perkins GA, Bossy-Wetzel E. PMID: 17053808.
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    292. Genetic variance modifies apoptosis susceptibility in mature oocytes via alterations in DNA repair capacity and mitochondrial ultrastructure. Cell Death Differ. 2007 Mar; 14(3):524-33. Perez GI, Acton BM, Jurisicova A, Perkins GA, White A, Brown J, Trbovich AM, Kim MR, Fissore R, Xu J, Ahmady A, D'Estaing SG, Li H, Kagawa W, Kurumizaka H, Yokoyama S, Okada H, Mak TW, Ellisman MH, Casper RF, Tilly JL. PMID: 17039249.
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    293. Mitochondria frozen with trehalose retain a number of biological functions and preserve outer membrane integrity. Cell Death Differ. 2007 Mar; 14(3):616-24. Yamaguchi R, Andreyev A, Murphy AN, Perkins GA, Ellisman MH, Newmeyer DD. PMID: 16977331.
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    294. Nitric oxide-induced mitochondrial fission is regulated by dynamin-related GTPases in neurons. EMBO J. 2006 Aug 23; 25(16):3900-11. Barsoum MJ, Yuan H, Gerencser AA, Liot G, Kushnareva Y, Gräber S, Kovacs I, Lee WD, Waggoner J, Cui J, White AD, Bossy B, Martinou JC, Youle RJ, Lipton SA, Ellisman MH, Perkins GA, Bossy-Wetzel E. PMID: 16874299; PMCID: PMC1553198.
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    295. Automated microscopy system for mosaic acquisition and processing. J Microsc. 2006 May; 222(Pt 2):76-84. Chow SK, Hakozaki H, Price DL, MacLean NA, Deerinck TJ, Bouwer JC, Martone ME, Peltier ST, Ellisman MH. PMID: 16774516.
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    296. The fluorescent toolbox for assessing protein location and function. Science. 2006 Apr 14; 312(5771):217-24. Giepmans BN, Adams SR, Ellisman MH, Tsien RY. PMID: 16614209.
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    297. Transform-based backprojection for volume reconstruction of large format electron microscope tilt series. J Struct Biol. 2006 May; 154(2):144-67. Lawrence A, Bouwer JC, Perkins G, Ellisman MH. PMID: 16542854.
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    298. A mutation linked with autism reveals a common mechanism of endoplasmic reticulum retention for the alpha,beta-hydrolase fold protein family. J Biol Chem. 2006 Apr 07; 281(14):9667-76. De Jaco A, Comoletti D, Kovarik Z, Gaietta G, Radic Z, Lockridge O, Ellisman MH, Taylor P. PMID: 16434405.
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    299. High-resolution large-scale mosaic imaging using multiphoton microscopy to characterize transgenic mouse models of human neurological disorders. Neuroinformatics. 2006; 4(1):65-80. Price DL, Chow SK, Maclean NA, Hakozaki H, Peltier S, Martone ME, Ellisman MH. PMID: 16595859.
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    300. Electron tomography of membrane-bound cellular organelles. Annu Rev Biophys Biomol Struct. 2006; 35:199-224. Frey TG, Perkins GA, Ellisman MH. PMID: 16689634.
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    301. A single mutation near the C-terminus in alpha/beta hydrolase fold protein family causes a defect in protein processing. Chem Biol Interact. 2005 Dec 15; 157-158:371-2. De Jaco A, Kovarik Z, Comoletti D, Jennings LL, Gaietta G, Ellisman MH, Taylor P. PMID: 16429495.
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    302. Transient decrease in F-actin may be necessary for translocation of proteins into dendritic spines. Eur J Neurosci. 2005 Dec; 22(12):2995-3005. Ouyang Y, Wong M, Capani F, Rensing N, Lee CS, Liu Q, Neusch C, Martone ME, Wu JY, Yamada K, Ellisman MH, Choi DW. PMID: 16367766; PMCID: PMC2286827.
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    303. STIM1 is a Ca2+ sensor that activates CRAC channels and migrates from the Ca2+ store to the plasma membrane. Nature. 2005 Oct 06; 437(7060):902-5. Zhang SL, Yu Y, Roos J, Kozak JA, Deerinck TJ, Ellisman MH, Stauderman KA, Cahalan MD. PMID: 16208375; PMCID: PMC1618826.
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    304. Correlated light and electron microscopic imaging of multiple endogenous proteins using Quantum dots. Nat Methods. 2005 Oct; 2(10):743-9. Giepmans BN, Deerinck TJ, Smarr BL, Jones YZ, Ellisman MH. PMID: 16179920.
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    305. Scientific Grid activities and PKI deployment in the Cybermedia Center, Osaka University. J Clin Monit Comput. 2005 Oct; 19(4-5):279-94. Akiyama T, Teranishi Y, Nozaki K, Kato S, Shimojo S, Peltier ST, Lin A, Molina T, Yang G, Lee D, Ellisman M, Naito S, Koike A, Matsumoto S, Yoshida K, Mori H. PMID: 16328943.
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    306. Evidence for ectopic neurotransmission at a neuronal synapse. Science. 2005 Jul 15; 309(5733):446-51. Coggan JS, Bartol TM, Esquenazi E, Stiles JR, Lamont S, Martone ME, Berg DK, Ellisman MH, Sejnowski TJ. PMID: 16020730; PMCID: PMC2915764.
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    307. Personalized exposure assessment: promising approaches for human environmental health research. Environ Health Perspect. 2005 Jul; 113(7):840-8. Weis BK, Balshaw D, Barr JR, Brown D, Ellisman M, Lioy P, Omenn G, Potter JD, Smith MT, Sohn L, Suk WA, Sumner S, Swenberg J, Walt DR, Watkins S, Thompson C, Wilson SH. PMID: 16002370; PMCID: PMC1257643.
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    308. Active pixel sensor array as a detector for electron microscopy. Ultramicroscopy. 2005 Sep; 104(2):152-9. Milazzo AC, Leblanc P, Duttweiler F, Jin L, Bouwer JC, Peltier S, Ellisman M, Bieser F, Matis HS, Wieman H, Denes P, Kleinfelder S, Xuong NH. PMID: 15890445.
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    309. A FlAsH-based FRET approach to determine G protein-coupled receptor activation in living cells. Nat Methods. 2005 Mar; 2(3):171-6. Hoffmann C, Gaietta G, Bünemann M, Adams SR, Oberdorff-Maass S, Behr B, Vilardaga JP, Tsien RY, Ellisman MH, Lohse MJ. PMID: 15782185.
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    310. Biomedical informatics research network: building a national collaboratory to hasten the derivation of new understanding and treatment of disease. Stud Health Technol Inform. 2005; 112:100-9. Grethe JS, Baru C, Gupta A, James M, Ludaescher B, Martone ME, Papadopoulos PM, Peltier ST, Rajasekar A, Santini S, Zaslavsky IN, Ellisman MH. PMID: 15923720.
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    311. Development of a model for microphysiological simulations: small nodes of ranvier from peripheral nerves of mice reconstructed by electron tomography. Neuroinformatics. 2005; 3(2):133-62. Sosinsky GE, Deerinck TJ, Greco R, Buitenhuys CH, Bartol TM, Ellisman MH. PMID: 15988042.
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    312. Automated most-probable loss tomography of thick selectively stained biological specimens with quantitative measurement of resolution improvement. J Struct Biol. 2004 Dec; 148(3):297-306. Bouwer JC, Mackey MR, Lawrence A, Deerinck TJ, Jones YZ, Terada M, Martone ME, Peltier S, Ellisman MH. PMID: 15522778.
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    313. Potassium channel subunit Kv3.2 and the water channel aquaporin-4 are selectively localized to cerebellar pinceau. Brain Res. 2004 Nov 12; 1026(2):168-78. Bobik M, Ellisman MH, Rudy B, Martone ME. PMID: 15488478.
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    314. Spatial mapping of integrin interactions and dynamics during cell migration by image correlation microscopy. J Cell Sci. 2004 Nov 01; 117(Pt 23):5521-34. Wiseman PW, Brown CM, Webb DJ, Hebert B, Johnson NL, Squier JA, Ellisman MH, Horwitz AF. PMID: 15479718.
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    315. Hypophosphorylated SR splicing factors transiently localize around active nucleolar organizing regions in telophase daughter nuclei. J Cell Biol. 2004 Oct 11; 167(1):51-63. Bubulya PA, Prasanth KV, Deerinck TJ, Gerlich D, Beaudouin J, Ellisman MH, Ellenberg J, Spector DL. PMID: 15479736; PMCID: PMC2172523.
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    316. The structure-function correlates of mammalian rod and cone photoreceptor mitochondria: observations and unanswered questions. Mitochondrion. 2004 Sep; 4(5-6):695-703. Perkins GA, Ellisman MH, Fox DA. PMID: 16120425.
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    317. Disruption of mitochondrial function during apoptosis is mediated by caspase cleavage of the p75 subunit of complex I of the electron transport chain. Cell. 2004 Jun 11; 117(6):773-86. Ricci JE, Muñoz-Pinedo C, Fitzgerald P, Bailly-Maitre B, Perkins GA, Yadava N, Scheffler IE, Ellisman MH, Green DR. PMID: 15186778.
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    318. Neuroimaging: strategies to illuminate environment-disease linkages. Session II. Summary and research needs. Neurotoxicology. 2004 Jun; 25(4):501-2. Slikker W, Pogge A, Walker R, Chatziiannou A, Charles C, Ellisman M. PMID: 15183002.
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    319. Absence of glial fibrillary acidic protein and vimentin prevents hypertrophy of astrocytic processes and improves post-traumatic regeneration. J Neurosci. 2004 May 26; 24(21):5016-21. Wilhelmsson U, Li L, Pekna M, Berthold CH, Blom S, Eliasson C, Renner O, Bushong E, Ellisman M, Morgan TE, Pekny M. PMID: 15163694; PMCID: PMC6729371.
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    320. The Arg451Cys-neuroligin-3 mutation associated with autism reveals a defect in protein processing. J Neurosci. 2004 May 19; 24(20):4889-93. Comoletti D, De Jaco A, Jennings LL, Flynn RE, Gaietta G, Tsigelny I, Ellisman MH, Taylor P. PMID: 15152050; PMCID: PMC6729460.
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    321. E-neuroscience: challenges and triumphs in integrating distributed data from molecules to brains. Nat Neurosci. 2004 May; 7(5):467-72. Martone ME, Gupta A, Ellisman MH. PMID: 15114360.
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    322. Tri-dimensional morphometric analysis of astrocytic processes with high voltage electron microscopy of thick Golgi preparations. J Neurocytol. 2004 May; 33(3):277-85. Hama K, Arii T, Katayama E, Marton M, Ellisman MH. PMID: 15475683.
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    323. Maturation of astrocyte morphology and the establishment of astrocyte domains during postnatal hippocampal development. Int J Dev Neurosci. 2004 Apr; 22(2):73-86. Bushong EA, Martone ME, Ellisman MH. PMID: 15036382.
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    324. Activity-dependent regulation of dendritic synthesis and trafficking of AMPA receptors. Nat Neurosci. 2004 Mar; 7(3):244-53. Ju W, Morishita W, Tsui J, Gaietta G, Deerinck TJ, Adams SR, Garner CC, Tsien RY, Ellisman MH, Malenka RC. PMID: 14770185.
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    325. Crosstalk between nitric oxide and zinc pathways to neuronal cell death involving mitochondrial dysfunction and p38-activated K+ channels. Neuron. 2004 Feb 05; 41(3):351-65. Bossy-Wetzel E, Talantova MV, Lee WD, Schölzke MN, Harrop A, Mathews E, Götz T, Han J, Ellisman MH, Perkins GA, Lipton SA. PMID: 14766175.
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    326. THE VIRTUAL INSTRUMENT: SUPPORT FOR GRID-ENABLED MCELL SIMULATIONS. Int J High Perform Comput Appl. 2004 Feb 01; 18(1):3-17. Casanova H, Berman F, Bartol T, Gokcay E, Sejnowski T, Birnbaum A, Dongarra J, Miller M, Ellisman M, Faerman M, Obertelli G, Wolski R, Pomerantz S, Stiles J. PMID: 20689618; PMCID: PMC2916200.
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    327. NF-M is an essential target for the myelin-directed "outside-in" signaling cascade that mediates radial axonal growth. J Cell Biol. 2003 Dec 08; 163(5):1011-20. Garcia ML, Lobsiger CS, Shah SB, Deerinck TJ, Crum J, Young D, Ward CM, Crawford TO, Gotow T, Uchiyama Y, Ellisman MH, Calcutt NA, Cleveland DW. PMID: 14662745; PMCID: PMC2173620.
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    328. Regulation of membrane trafficking and subcellular organization of endocytic compartments revealed with FM1-43 in resting and activated human T cells. Exp Cell Res. 2003 Nov 15; 291(1):150-66. Fomina AF, Deerinck TJ, Ellisman MH, Cahalan MD. PMID: 14597416; PMCID: PMC2749753.
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    329. ER-to-Golgi carriers arise through direct en bloc protrusion and multistage maturation of specialized ER exit domains. Dev Cell. 2003 Oct; 5(4):583-94. Mironov AA, Mironov AA, Beznoussenko GV, Trucco A, Lupetti P, Smith JD, Geerts WJ, Koster AJ, Burger KN, Martone ME, Deerinck TJ, Ellisman MH, Luini A. PMID: 14536060.
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    330. Cometabolism of Cr(VI) by Shewanella oneidensis MR-1 produces cell-associated reduced chromium and inhibits growth. Biotechnol Bioeng. 2003 Sep 20; 83(6):627-37. Middleton SS, Latmani RB, Mackey MR, Ellisman MH, Tebo BM, Criddle CS. PMID: 12889027.
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    331. Localization of group V phospholipase A2 in caveolin-enriched granules in activated P388D1 macrophage-like cells. J Biol Chem. 2003 Nov 28; 278(48):48059-65. Balboa MA, Shirai Y, Gaietta G, Ellisman MH, Balsinde J, Dennis EA. PMID: 12963740.
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    332. Vertigo in virtual reality with haptics: case report. Cyberpsychol Behav. 2003 Aug; 6(4):429-31. Viirre E, Ellisman M. PMID: 14511456.
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    333. Examination of the relationship between astrocyte morphology and laminar boundaries in the molecular layer of adult dentate gyrus. J Comp Neurol. 2003 Jul 21; 462(2):241-51. Bushong EA, Martone ME, Ellisman MH. PMID: 12794746.
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    334. Tetracysteine genetic tags complexed with biarsenical ligands as a tool for investigating gap junction structure and dynamics. Cell Commun Adhes. 2003 Jul-Dec; 10(4-6):181-6. Sosinsky GE, Gaietta GM, Hand G, Deerinck TJ, Han A, Mackey M, Adams SR, Bouwer J, Tsien RY, Ellisman MH. PMID: 14681013.
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    335. 5-HT2a receptors in rat sciatic nerves and Schwann cell cultures. J Neurocytol. 2003 May; 32(4):373-80. Gaietta GM, Yoder EJ, Deerinck T, Kinder K, Hanono A, Han A, Wu C, Ellisman MH. PMID: 14724380.
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    336. JNK1 is required for maintenance of neuronal microtubules and controls phosphorylation of microtubule-associated proteins. Dev Cell. 2003 Apr; 4(4):521-33. Chang L, Jones Y, Ellisman MH, Goldstein LS, Karin M. PMID: 12689591.
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    337. Three-dimensional analysis of mouse rod and cone mitochondrial cristae architecture: bioenergetic and functional implications. Mol Vis. 2003 Mar 11; 9:60-73. Perkins GA, Ellisman MH, Fox DA. PMID: 12632036.
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    338. Bcl-xL overexpression blocks bax-mediated mitochondrial contact site formation and apoptosis in rod photoreceptors of lead-exposed mice. Proc Natl Acad Sci U S A. 2003 Feb 04; 100(3):1022-7. He L, Perkins GA, Poblenz AT, Harris JB, Hung M, Ellisman MH, Fox DA. PMID: 12540825; PMCID: PMC298719.
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    339. The cell-centered database: a database for multiscale structural and protein localization data from light and electron microscopy. Neuroinformatics. 2003; 1(4):379-95. Martone ME, Zhang S, Gupta A, Qian X, He H, Price DL, Wong M, Santini S, Ellisman MH. PMID: 15043222.
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    340. Distribution of rSlo Ca2+-activated K+ channels in rat astrocyte perivascular endfeet. Brain Res. 2002 Nov 29; 956(2):183-93. Price DL, Ludwig JW, Mi H, Schwarz TL, Ellisman MH. PMID: 12445685.
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    341. Depolarization redistributes synaptic membrane and creates a gradient of vesicles on the synaptic body at a ribbon synapse. Neuron. 2002 Nov 14; 36(4):649-59. Lenzi D, Crum J, Ellisman MH, Roberts WM. PMID: 12441054.
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    342. Bid, Bax, and lipids cooperate to form supramolecular openings in the outer mitochondrial membrane. Cell. 2002 Nov 01; 111(3):331-42. Kuwana T, Mackey MR, Perkins G, Ellisman MH, Latterich M, Schneiter R, Green DR, Newmeyer DD. PMID: 12419244.
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    343. Ultrastructural organization of lamprey reticulospinal synapses in three dimensions. J Comp Neurol. 2002 Aug 19; 450(2):167-82. Gustafsson JS, Birinyi A, Crum J, Ellisman M, Brodin L, Shupliakov O. PMID: 12124761.
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    344. Differential subcellular localization of the two alternatively spliced isoforms of the Kv3.1 potassium channel subunit in brain. J Neurophysiol. 2002 Jul; 88(1):394-408. Ozaita A, Martone ME, Ellisman MH, Rudy B. PMID: 12091563.
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    345. Multicolor and electron microscopic imaging of connexin trafficking. Science. 2002 Apr 19; 296(5567):503-7. Gaietta G, Deerinck TJ, Adams SR, Bouwer J, Tour O, Laird DW, Sosinsky GE, Tsien RY, Ellisman MH. PMID: 11964472.
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    346. A cell-centered database for electron tomographic data. J Struct Biol. 2002 Apr-May; 138(1-2):145-55. Martone ME, Gupta A, Wong M, Qian X, Sosinsky G, Ludäscher B, Ellisman MH. PMID: 12160711.
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    347. High-performance electron tomography of complex biological specimens. J Struct Biol. 2002 Apr-May; 138(1-2):6-20. Fernández JJ, Lawrence AF, Roca J, García I, Ellisman MH, Carazo JM. PMID: 12160697.
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    348. Ultrastructure of a somatic spine mat for nicotinic signaling in neurons. J Neurosci. 2002 Feb 01; 22(3):748-56. Shoop RD, Esquenazi E, Yamada N, Ellisman MH, Berg DK. PMID: 11826104; PMCID: PMC6758519.
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    349. Overexpression of the CT GalNAc transferase in skeletal muscle alters myofiber growth, neuromuscular structure, and laminin expression. Dev Biol. 2002 Feb 01; 242(1):58-73. Xia B, Hoyte K, Kammesheidt A, Deerinck T, Ellisman M, Martin PT. PMID: 11795940.
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    350. Protoplasmic astrocytes in CA1 stratum radiatum occupy separate anatomical domains. J Neurosci. 2002 Jan 01; 22(1):183-92. Bushong EA, Martone ME, Jones YZ, Ellisman MH. PMID: 11756501; PMCID: PMC6757596.
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    351. Filamentous actin is concentrated in specific subpopulations of neuronal and glial structures in rat central nervous system. Brain Res. 2001 Dec 27; 923(1-2):1-11. Capani F, Ellisman MH, Martone ME. PMID: 11743966.
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    352. Membrane architecture of mitochondria in neurons of the central nervous system. J Neurosci Res. 2001 Dec 01; 66(5):857-65. Perkins GA, Renken CW, Frey TG, Ellisman MH. PMID: 11746412.
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    353. Phalloidin-eosin followed by photo-oxidation: a novel method for localizing F-actin at the light and electron microscopic levels. J Histochem Cytochem. 2001 Nov; 49(11):1351-61. Capani F, Deerinck TJ, Ellisman MH, Bushong E, Bobik M, Martone ME. PMID: 11668188.
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    354. PKA, PKC, and AKAP localization in and around the neuromuscular junction. BMC Neurosci. 2001; 2:17. Perkins GA, Wang L, Huang LJ, Humphries K, Yao VJ, Martone M, Deerinck TJ, Barraclough DM, Violin JD, Smith D, Newton A, Scott JD, Taylor SS, Ellisman MH. PMID: 11716788; PMCID: PMC59892.
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    355. Selective localization of high concentrations of F-actin in subpopulations of dendritic spines in rat central nervous system: a three-dimensional electron microscopic study. J Comp Neurol. 2001 Jun 25; 435(2):156-70. Capani F, Martone ME, Deerinck TJ, Ellisman MH. PMID: 11391638.
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    356. Cloning and mitochondrial localization of full-length D-AKAP2, a protein kinase A anchoring protein. Proc Natl Acad Sci U S A. 2001 Mar 13; 98(6):3220-5. Wang L, Sunahara RK, Krumins A, Perkins G, Crochiere ML, Mackey M, Bell S, Ellisman MH, Taylor SS. PMID: 11248059; PMCID: PMC30634.
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    357. Adjacent basic amino acid residues recognized by the COP I complex and ubiquitination govern endoplasmic reticulum to cell surface trafficking of the nicotinic acetylcholine receptor alpha-Subunit. J Biol Chem. 2001 May 25; 276(21):18384-91. Keller SH, Lindstrom J, Ellisman M, Taylor P. PMID: 11279119.
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    358. Specific labeling of connexin43 in NRK cells using tyramide-based signal amplification and fluorescence photooxidation. Microsc Res Tech. 2001 Feb 01; 52(3):331-43. Hand GM, Martone ME, Stelljes A, Ellisman MH, Sosinsky GE. PMID: 11180624.
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    359. Synaptically driven calcium transients via nicotinic receptors on somatic spines. J Neurosci. 2001 Feb 01; 21(3):771-81. Shoop RD, Chang KT, Ellisman MH, Berg DK. PMID: 11157063; PMCID: PMC6762332.
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    360. Electron tomography of mitochondria after the arrest of protein import associated with Tom19 depletion. Eur J Cell Biol. 2001 Feb; 80(2):139-50. Perkins GA, Renken CW, van der Klei IJ, Ellisman MH, Neupert W, Frey TG. PMID: 11302518.
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    361. Digital imaging in transmission electron microscopy. J Microsc. 2000 Oct; 200(Pt 1):1-13. Fan GY, Ellisman MH. PMID: 11012823.
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    362. Two-photon image correlation spectroscopy and image cross-correlation spectroscopy. J Microsc. 2000 Oct; 200(Pt 1):14-25. Wiseman PW, Squier JA, Ellisman MH, Wilson KR. PMID: 11012824.
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    363. Expression and function of alpha(v)beta(3) and alpha(v)beta(5) integrins in the developing pancreas: roles in the adhesion and migration of putative endocrine progenitor cells. J Cell Biol. 2000 Sep 18; 150(6):1445-60. Cirulli V, Beattie GM, Klier G, Ellisman M, Ricordi C, Quaranta V, Frasier F, Ishii JK, Hayek A, Salomon DR. PMID: 10995448; PMCID: PMC2150716.
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    364. Fission and uncoating of synaptic clathrin-coated vesicles are perturbed by disruption of interactions with the SH3 domain of endophilin. Neuron. 2000 Aug; 27(2):301-12. Gad H, Ringstad N, Löw P, Kjaerulff O, Gustafsson J, Wenk M, Di Paolo G, Nemoto Y, Crun J, Ellisman MH, De Camilli P, Shupliakov O, Brodin L. PMID: 10985350.
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    365. Multiport-readout frame-transfer 5 megapixel CCD imaging system for TEM applications. Ultramicroscopy. 2000 Jul; 84(1-2):75-84. Fan GY, Peltier S, Lamont S, Dunkelberger DG, Burke BE, Ellisman MH. PMID: 10896142.
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    366. International telemicroscopy with a 3 MV ultrahigh voltage electron microscope. Ultramicroscopy. 2000 May; 83(1-2):93-101. Takaoka A, Yoshida K, Mori H, Hayashi S, Young SJ, Ellisman MH. PMID: 10805395.
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    367. A specific activation of the mitogen-activated protein kinase kinase 1 (MEK1) is required for Golgi fragmentation during mitosis. J Cell Biol. 2000 Apr 17; 149(2):331-9. Colanzi A, Deerinck TJ, Ellisman MH, Malhotra V. PMID: 10769026; PMCID: PMC2175149.
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    368. Subcellular localization and PKC-dependent regulation of the human lysophospholipase A/acyl-protein thioesterase in WISH cells. Biochim Biophys Acta. 2000 Apr 12; 1484(2-3):207-14. Wang A, Johnson CA, Jones Y, Ellisman MH, Dennis EA. PMID: 10760470.
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    369. Aberrant development of motor axons and neuromuscular synapses in erbB2-deficient mice. Proc Natl Acad Sci U S A. 2000 Feb 01; 97(3):1299-304. Lin W, Sanchez HB, Deerinck T, Morris JK, Ellisman M, Lee KF. PMID: 10655525; PMCID: PMC15603.
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    370. Alterations of hippocampal postsynaptic densities following transient ischemia. Hippocampus. 2000; 10(5):610-6. Martone ME, Hu BR, Ellisman MH. PMID: 11075832.
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    371. Morphological adaptation of the peptidergic innervation to chronic hypoxia in the rat carotid body. Adv Exp Med Biol. 2000; 475:623-30. Matsuda H, Kusakabe T, Hayashida Y, Powell FL, Ellisman MH, Kawakami T, Takenaka T. PMID: 10849702.
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    372. Human cord blood progenitors sustain thymic T-cell development and a novel form of angiogenesis. Blood. 1999 Dec 01; 94(11):3928-40. Crisa L, Cirulli V, Smith KA, Ellisman MH, Torbett BE, Salomon DR. PMID: 10572110.
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    373. Localization of a passively transferred human recombinant monoclonal antibody to herpes simplex virus glycoprotein D to infected nerve fibers and sensory neurons in vivo. J Virol. 1999 Oct; 73(10):8817-23. Sanna PP, Deerinck TJ, Ellisman MH. PMID: 10482637; PMCID: PMC112904.
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    374. The IKKbeta subunit of IkappaB kinase (IKK) is essential for nuclear factor kappaB activation and prevention of apoptosis. J Exp Med. 1999 Jun 07; 189(11):1839-45. Li ZW, Chu W, Hu Y, Delhase M, Deerinck T, Ellisman M, Johnson R, Karin M. PMID: 10359587; PMCID: PMC2193082.
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    375. NH2-Terminal targeting motifs direct dual specificity A-kinase-anchoring protein 1 (D-AKAP1) to either mitochondria or endoplasmic reticulum. J Cell Biol. 1999 May 31; 145(5):951-9. Huang LJ, Wang L, Ma Y, Durick K, Perkins G, Deerinck TJ, Ellisman MH, Taylor SS. PMID: 10352013; PMCID: PMC2133123.
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    376. Video-rate scanning two-photon excitation fluorescence microscopy and ratio imaging with cameleons. Biophys J. 1999 May; 76(5):2412-20. Fan GY, Fujisaki H, Miyawaki A, Tsay RK, Tsien RY, Ellisman MH. PMID: 10233058; PMCID: PMC1300213.
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    377. Abnormal morphogenesis but intact IKK activation in mice lacking the IKKalpha subunit of IkappaB kinase. Science. 1999 Apr 09; 284(5412):316-20. Hu Y, Baud V, Delhase M, Zhang P, Deerinck T, Ellisman M, Johnson R, Karin M. PMID: 10195896.
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    378. Web-based telemicroscopy. J Struct Biol. 1999 Apr-May; 125(2-3):235-45. Hadida-Hassan M, Young SJ, Peltier ST, Wong M, Lamont S, Ellisman MH. PMID: 10222280.
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    379. Identification and localization of Ca(2+)-activated K+ channels in rat sciatic nerve. Glia. 1999 Apr; 26(2):166-75. Mi H, Harris-Warrick RM, Deerinck TJ, Inman I, Ellisman MH, Schwarz TL. PMID: 10384881.
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    380. The Electron Microscopy Outreach Program: A Web-based resource for research and education. J Struct Biol. 1999 Apr-May; 125(2-3):246-52. Sosinsky GE, Baker TS, Hand G, Ellisman MH. PMID: 10222281.
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    381. Modification of postsynaptic densities after transient cerebral ischemia: a quantitative and three-dimensional ultrastructural study. J Neurosci. 1999 Mar 15; 19(6):1988-97. Martone ME, Jones YZ, Young SJ, Ellisman MH, Zivin JA, Hu BR. PMID: 10066252; PMCID: PMC6782552.
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    382. Persistent phosphorylation of cyclic AMP responsive element-binding protein and activating transcription factor-2 transcription factors following transient cerebral ischemia in rat brain. Neuroscience. 1999 Mar; 89(2):437-52. Hu BR, Fux CM, Martone ME, Zivin JA, Ellisman MH. PMID: 10077326.
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    383. The distribution of ganglioside-like moieties in peripheral nerves. Brain. 1999 Mar; 122 ( Pt 3):449-60. Sheikh KA, Deerinck TJ, Ellisman MH, Griffin JW. PMID: 10094254.
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    384. Cellular and subcellular distribution of the calcium-binding protein NCS-1 in the central nervous system of the rat. Cell Tissue Res. 1999 Mar; 295(3):395-407. Martone ME, Edelmann VM, Ellisman MH, Nef P. PMID: 10022960.
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    385. Neuronal acetylcholine receptors with alpha7 subunits are concentrated on somatic spines for synaptic signaling in embryonic chick ciliary ganglia. J Neurosci. 1999 Jan 15; 19(2):692-704. Shoop RD, Martone ME, Yamada N, Ellisman MH, Berg DK. PMID: 9880590; PMCID: PMC6782210.
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    386. Synaptic vesicle populations in saccular hair cells reconstructed by electron tomography. J Neurosci. 1999 Jan 01; 19(1):119-32. Lenzi D, Runyeon JW, Crum J, Ellisman MH, Roberts WM. PMID: 9870944; PMCID: PMC6782356.
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    387. Subcellular localization of mRNA in neuronal cells. Contributions of high-resolution in situ hybridization techniques. Mol Neurobiol. 1998 Dec; 18(3):227-46. Martone ME, Pollock JA, Ellisman MH. PMID: 10206470.
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    388. The perinucleolar compartment and transcription. J Cell Biol. 1998 Oct 05; 143(1):35-47. Huang S, Deerinck TJ, Ellisman MH, Spector DL. PMID: 9763419; PMCID: PMC2132804.
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    389. Electron tomography of mitochondria from brown adipocytes reveals crista junctions. J Bioenerg Biomembr. 1998 Oct; 30(5):431-42. Perkins GA, Song JY, Tarsa L, Deerinck TJ, Ellisman MH, Frey TG. PMID: 9932646.
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    390. Hypoxic adaptation of the peptidergic innervation in the rat carotid body. Brain Res. 1998 Sep 28; 806(2):165-74. Kusakabe T, Hayashida Y, Matsuda H, Gono Y, Powell FL, Ellisman MH, Kawakami T, Takenaka T. PMID: 9739132.
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    391. Development and characterization of monoclonal antibodies specific to the serotonin 5-HT2A receptor. J Histochem Cytochem. 1998 Jul; 46(7):811-24. Wu C, Yoder EJ, Shih J, Chen K, Dias P, Shi L, Ji XD, Wei J, Conner JM, Kumar S, Ellisman MH, Singh SK. PMID: 9632740.
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    392. KSA antigen Ep-CAM mediates cell-cell adhesion of pancreatic epithelial cells: morphoregulatory roles in pancreatic islet development. J Cell Biol. 1998 Mar 23; 140(6):1519-34. Cirulli V, Crisa L, Beattie GM, Mally MI, Lopez AD, Fannon A, Ptasznik A, Inverardi L, Ricordi C, Deerinck T, Ellisman M, Reisfeld RA, Hayek A. PMID: 9508783; PMCID: PMC2132663.
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    393. Specific interaction of HTLV tax protein and a human type IV neuronal intermediate filament protein. Proc Natl Acad Sci U S A. 1998 Jan 20; 95(2):702-7. Reddy TR, Li X, Jones Y, Ellisman MH, Ching GY, Liem RK, Wong-Staal F. PMID: 9435256; PMCID: PMC18484.
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    394. Assembly of proteins to postsynaptic densities after transient cerebral ischemia. J Neurosci. 1998 Jan 15; 18(2):625-33. Hu BR, Park M, Martone ME, Fischer WH, Ellisman MH, Zivin JA. PMID: 9425004; PMCID: PMC6792532.
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    395. ASIC-based event-driven 2D digital electron counter for TEM imaging. Ultramicroscopy. 1998 Jan; 70(3):107-13. Fan GY, Datte P, Beuville E, Beche JF, Millaud J, Downing KH, Burkard FT, Ellisman MH, Xuong NH. PMID: 9499588.
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    396. Potassium channel distribution, clustering, and function in remyelinating rat axons. J Neurosci. 1998 Jan 01; 18(1):36-47. Rasband MN, Trimmer JS, Schwarz TL, Levinson SR, Ellisman MH, Schachner M, Shrager P. PMID: 9412484; PMCID: PMC6793423.
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    397. Electron tomography of large, multicomponent biological structures. J Struct Biol. 1997 Dec; 120(3):219-27. Perkins GA, Renken CW, Song JY, Frey TG, Young SJ, Lamont S, Martone ME, Lindsey S, Ellisman MH. PMID: 9441927.
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    398. Differential distribution and subcellular localization of ryanodine receptor isoforms in the chicken cerebellum during development. Brain Res. 1997 Nov 14; 775(1-2):52-62. Ouyang Y, Martone ME, Deerinck TJ, Airey JA, Sutko JL, Ellisman MH. PMID: 9439828.
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    399. Immunolocalization of the receptor tyrosine kinase EphA4 in the adult rat central nervous system. Brain Res. 1997 Oct 17; 771(2):238-50. Martone ME, Holash JA, Bayardo A, Pasquale EB, Ellisman MH. PMID: 9401744.
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    400. Subcellular localization of the K+ channel subunit Kv3.1b in selected rat CNS neurons. Brain Res. 1997 Aug 22; 766(1-2):173-87. Sekirnjak C, Martone ME, Weiser M, Deerinck T, Bueno E, Rudy B, Ellisman M. PMID: 9359601.
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    401. Electron tomography of neuronal mitochondria: three-dimensional structure and organization of cristae and membrane contacts. J Struct Biol. 1997 Aug; 119(3):260-72. Perkins G, Renken C, Martone ME, Young SJ, Ellisman M, Frey T. PMID: 9245766.
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    402. Myosin I is associated with zymogen granule membranes in the rat pancreatic acinar cell. Gastroenterology. 1997 Aug; 113(2):649-58. Poucell-Hatton S, Perkins PS, Deerinck TJ, Ellisman MH, Hardison WG, Pandol SJ. PMID: 9247487.
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    403. Clustering of voltage-sensitive sodium channels on axons is independent of direct Schwann cell contact in the dystrophic mouse. J Neurosci. 1997 Jul 01; 17(13):5080-8. Deerinck TJ, Levinson SR, Bennett GV, Ellisman MH. PMID: 9185545; PMCID: PMC6573302.
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    404. The dynamic organization of the perinucleolar compartment in the cell nucleus. J Cell Biol. 1997 Jun 02; 137(5):965-74. Huang S, Deerinck TJ, Ellisman MH, Spector DL. PMID: 9166399; PMCID: PMC2136227.
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    405. A cellular cofactor for the constitutive transport element of type D retrovirus. Science. 1997 May 30; 276(5317):1412-5. Tang H, Gaietta GM, Fischer WH, Ellisman MH, Wong-Staal F. PMID: 9162007.
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    406. Distribution of inositol-1,4,5-trisphosphate and ryanodine receptors in rat neostriatum. Brain Res. 1997 May 09; 756(1-2):9-21. Martone ME, Alba SA, Edelman VM, Airey JA, Ellisman MH. PMID: 9187309.
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    407. Absence of cerebellar long-term depression in mice lacking neuronal nitric oxide synthase. Learn Mem. 1997 May-Jun; 4(1):169-77. Lev-Ram V, Nebyelul Z, Ellisman MH, Huang PL, Tsien RY. PMID: 10456061.
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    408. Serotonin receptors expressed by myelinating Schwann cells in rat sciatic nerve. Brain Res. 1997 Apr 11; 753(2):299-308. Yoder EJ, Tamir H, Ellisman MH. PMID: 9125415.
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    409. Visualization of the peroxisomal compartment in living mammalian cells: dynamic behavior and association with microtubules. J Cell Biol. 1997 Jan 13; 136(1):71-80. Wiemer EA, Wenzel T, Deerinck TJ, Ellisman MH, Subramani S. PMID: 9008704; PMCID: PMC2132450.
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    410. The expression of serotonin receptors by cultured rat Schwann cells is a function of their differentiation: correlation with a quiescent myelinating phenotype. Mol Cell Neurosci. 1997; 8(5):303-10. Yoder EJ, Lee B, Ellisman MH. PMID: 9073393.
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    411. Translocation of RNA granules in living neurons. J Neurosci. 1996 Dec 15; 16(24):7812-20. Knowles RB, Sabry JH, Martone ME, Deerinck TJ, Ellisman MH, Bassell GJ, Kosik KS. PMID: 8987809; PMCID: PMC6579227.
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    412. Ultrastructural localization of dendritic messenger RNA in adult rat hippocampus. J Neurosci. 1996 Dec 01; 16(23):7437-46. Martone ME, Pollock JA, Jones YZ, Ellisman MH. PMID: 8922399; PMCID: PMC6579092.
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    413. Optimization of thin-foil based phosphor screens for CCD imaging in TEM in the voltage range of 80-400 kV. Ultramicroscopy. 1996 Nov; 66(1-2):11-9. Fan GY, Ellisman MH. PMID: 9134757.
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    414. Isoform-specific redistribution of protein kinase C in living cells. Biochim Biophys Acta. 1996 Aug 21; 1313(1):63-71. Godson C, Masliah E, Balboa MA, Ellisman MH, Insel PA. PMID: 8781551.
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    415. Direct modulation of calmodulin targets by the neuronal calcium sensor NCS-1. Proc Natl Acad Sci U S A. 1996 Aug 20; 93(17):9253-8. Schaad NC, De Castro E, Nef S, Hegi S, Hinrichsen R, Martone ME, Ellisman MH, Sikkink R, Rusnak F, Sygush J, Nef P. PMID: 8799187; PMCID: PMC38628.
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    416. Cell adhesion and migration are regulated at distinct stages of thymic T cell development: the roles of fibronectin, VLA4, and VLA5. J Exp Med. 1996 Jul 01; 184(1):215-28. Crisa L, Cirulli V, Ellisman MH, Ishii JK, Elices MJ, Salomon DR. PMID: 8691136; PMCID: PMC2192681.
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    417. Clusters of axonal Na+ channels adjacent to remyelinating Schwann cells. J Neurocytol. 1996 Jun; 25(6):403-12. Novakovic SD, Deerinck TJ, Levinson SR, Shrager P, Ellisman MH. PMID: 8835788.
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    418. 5-Hydroxytryptamine2A receptors on cultured rat Schwann cells. Glia. 1996 May; 17(1):15-27. Yoder EJ, Tamir H, Ellisman MH. PMID: 8723839.
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    419. In vivo calcineurin crystals formed using the baculovirus expression system. Microsc Res Tech. 1996 May 01; 34(1):77-86. Fan GY, Maldonado F, Zhang Y, Kincaid R, Ellisman MH, Gastinel LN. PMID: 8859891.
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    420. Inwardly rectifying K+ channels that may participate in K+ buffering are localized in microvilli of Schwann cells. J Neurosci. 1996 Apr 15; 16(8):2421-9. Mi H, Deerinck TJ, Jones M, Ellisman MH, Schwarz TL. PMID: 8786419; PMCID: PMC6578751.
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    421. A flexible environment for the visualization of three-dimensional biological structures. J Struct Biol. 1996 Jan-Feb; 116(1):113-9. Hessler D, Young SJ, Ellisman MH. PMID: 8742732.
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    422. Distribution of substance P and calcitonin gene-related peptide immunoreactive nerve fibers in the trachea of chronically hypoxic rats. Brain Res Bull. 1996; 39(6):335-9. Kusakabe T, Kawakami T, Powell FL, Ellisman MH, Sawada H, Takenaka T. PMID: 9138742.
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    423. Localization of human immunodeficiency virus Rev in transfected and virus-infected cells. AIDS Res Hum Retroviruses. 1995 Jul; 11(7):795-804. Luznik L, Martone ME, Kraus G, Zhang Y, Xu Y, Ellisman MH, Wong-Staal F. PMID: 7546906.
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    424. Hepatic Na(+)-K(+)-ATPase enzyme activity correlates with polarized beta-subunit expression. Am J Physiol. 1995 Jul; 269(1 Pt 1):C69-84. Simon FR, Leffert HL, Ellisman M, Iwahashi M, Deerinck T, Fortune J, Morales D, Dahl R, Sutherland E. PMID: 7631761.
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    425. The potassium channel subunit KV3.1b is localized to somatic and axonal membranes of specific populations of CNS neurons. J Neurosci. 1995 Jun; 15(6):4298-314. Weiser M, Bueno E, Sekirnjak C, Martone ME, Baker H, Hillman D, Chen S, Thornhill W, Ellisman M, Rudy B. PMID: 7790912; PMCID: PMC6577740.
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    426. Differential distribution of closely related potassium channels in rat Schwann cells. J Neurosci. 1995 May; 15(5 Pt 2):3761-74. Mi H, Deerinck TJ, Ellisman MH, Schwarz TL. PMID: 7751944; PMCID: PMC6578200.
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    427. Axonal activation-induced calcium transients in myelinating Schwann cells, sources, and mechanisms. J Neurosci. 1995 Apr; 15(4):2628-37. Lev-Ram V, Ellisman MH. PMID: 7722618; PMCID: PMC6577779.
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    428. A sex difference in synaptic efficacy at the laryngeal neuromuscular junction of Xenopus laevis. J Neurosci. 1995 Mar; 15(3 Pt 1):1660-8. Tobias ML, Kelley DB, Ellisman M. PMID: 7891126; PMCID: PMC3493209.
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    429. Conditions for electron tomographic data acquisition. J Electron Microsc (Tokyo). 1995 Feb; 44(1):15-21. Fan GY, Young SJ, Miller P, Ellisman MH. PMID: 7751829.
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    430. TTX-sensitive dendritic sodium channels underlie oscillatory discharge in a vertebrate sensory neuron. J Neurosci. 1994 Nov; 14(11 Pt 1):6453-71. Turner RW, Maler L, Deerinck T, Levinson SR, Ellisman MH. PMID: 7965050; PMCID: PMC6577230.
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    431. Stereoscopy by tilted illumination in transmission electron microscopy. Ultramicroscopy. 1994 Aug; 55(2):155-64. Fan GY, Ellisman MH. PMID: 7941099.
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    432. In vivo analysis of the stability and transport of nuclear poly(A)+ RNA. J Cell Biol. 1994 Aug; 126(4):877-99. Huang S, Deerinck TJ, Ellisman MH, Spector DL. PMID: 7519622; PMCID: PMC2120126.
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    433. Fluorescence photooxidation with eosin: a method for high resolution immunolocalization and in situ hybridization detection for light and electron microscopy. J Cell Biol. 1994 Aug; 126(4):901-10. Deerinck TJ, Martone ME, Lev-Ram V, Green DP, Tsien RY, Spector DL, Huang S, Ellisman MH. PMID: 7519623; PMCID: PMC2120127.
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    434. Performance of thin foil scintillating screen for transmission electron microscopy. Ultramicroscopy. 1994 Jul; 55(1):7-14. Fan GY, Dunkelberger DG, Ellisman MH. PMID: 7974848.
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    435. Serial section electron tomography: a method for three-dimensional reconstruction of large structures. Neuroimage. 1994 Jun; 1(3):230-43. Soto GE, Young SJ, Martone ME, Deerinck TJ, Lamont S, Carragher BO, Hama K, Ellisman MH. PMID: 9343574.
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    436. A 28 kDa sarcolemmal antigen in kidney principal cell basolateral membranes: relationship to orthogonal arrays and MIP26. J Cell Sci. 1994 Apr; 107 ( Pt 4):1083-94. Verbavatz JM, Van Hoek AN, Ma T, Sabolic I, Valenti G, Ellisman MH, Ausiello DA, Verkman AS, Brown D. PMID: 7520041.
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    437. Effects of chronic hypoxia on rat carotid body and toad carotid labyrinth glomus cells. Adv Exp Med Biol. 1994; 360:365-7. Powell FL, Kusakabe T, Ellisman MH. PMID: 7872121.
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    438. Telemicroscopy. Ultramicroscopy. 1993 Dec; 52(3-4):499-503. Fan GY, Mercurio PJ, Young SJ, Ellisman MH. PMID: 8116104.
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    439. Performance characteristics of radioluminescent fiber optics as electron scintillators. J Electron Microsc (Tokyo). 1993 Dec; 42(6):419-23. Fan GY, Bueno C, Dunkelberger D, Ellisman MH. PMID: 8176337.
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    440. Three-dimensional visualization of the smooth endoplasmic reticulum in Purkinje cell dendrites. J Neurosci. 1993 Nov; 13(11):4636-46. Martone ME, Zhang Y, Simpliciano VM, Carragher BO, Ellisman MH. PMID: 8229189; PMCID: PMC6576343.
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    441. Re-evaluation of the structural organization of neuritic plaques in Alzheimer's disease. J Neuropathol Exp Neurol. 1993 Nov; 52(6):619-32. Masliah E, Mallory M, Deerinck T, DeTeresa R, Lamont S, Miller A, Terry RD, Carragher B, Ellisman M. PMID: 8229081.
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    442. Ultrastructure of the glomus cells in the carotid body of chronically hypoxic rats: with special reference to the similarity of amphibian glomus cells. Anat Rec. 1993 Oct; 237(2):220-7. Kusakabe T, Powell FL, Ellisman MH. PMID: 8238973.
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    443. High-sensitivity lens-coupled slow-scan CCD camera for transmission electron microscopy. Ultramicroscopy. 1993 Sep; 52(1):21-9. Fan GY, Ellisman MH. PMID: 8266607.
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