Thomas Whisenant

TitleComputational Data Science Researcher
InstitutionUniversity of California San Diego
Address9500 Gilman Drive #0681
La Jolla CA 92093
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help.
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    1. Friedewald JJ, Kurian SM, Heilman RL, Whisenant T, Poggio ED, Marsh C, Baliga P, Odim J, Brown MM, Ikle DN, Armstrong BD, Charette JI, Brietigam SS, Sustento-Reodica N, Zhao L, Kandpal M, Salomon DR, Abecassis MM. Development and Clinical validity of a novel blood-based molecular biomarker for sub-clinical acute rejection following kidney transplant. Am J Transplant. 2018 Jul 09. PMID: 29985559.
      View in: PubMed
    2. Kurian SM, Whisenant T, Mathew JM, Miller J, Leventhal JR. Transcriptomic studies in tolerance: Lessons learned and the path forward. Hum Immunol. 2018 May; 79(5):395-401. PMID: 29481826.
      View in: PubMed
    3. Kurian SM, Whisenant T, Mas V, Heilman R, Abecassis M, Salomon DR, Moss A, Kaplan B. Biomarker Guidelines for High-Dimensional Genomic Studies in Transplantation: Adding Method to the Madness. Transplantation. 2017 03; 101(3):457-463. PMID: 28212255.
      View in: PubMed
    4. Whisenant T. Gene expression profiling of U2AF2 dependent RNA-protein interactions during CD4 + T cell activation. Genom Data. 2017 Mar; 11:77-80. PMID: 28050347.
      View in: PubMed
    5. Kurian SM, Novais M, Whisenant T, Gelbart T, Buxbaum JN, Kelly JW, Coelho T, Salomon DR. Peripheral Blood Cell Gene Expression Diagnostic for Identifying Symptomatic Transthyretin Amyloidosis Patients: Male and Female Specific Signatures. Theranostics. 2016; 6(11):1792-809. PMID: 27570551; PMCID: PMC4997237.
    6. Jones KD, Gelbart T, Whisenant T, Waalen J, Mondala TS, Iklé DN, Salomon DR, Bennett RM, Kurian SM. Genome-wide expression profiling in the peripheral blood of patients with fibromyalgia. Clin Exp Rheumatol. 2016 Mar-Apr; 34(2 Suppl 96):S89-98. PMID: 27157394; PMCID: PMC4888802.
    7. Whisenant T, Peralta ER, Aarreberg LD, Gao NJ, Head SR, Ordoukhanian P, Williamson JR, Salomon DR. The Activation-Induced Assembly of an RNA/Protein Interactome Centered on the Splicing Factor U2AF2 Regulates Gene Expression in Human CD4 T Cells. PLoS One. 2015; 10(12):e0144409. PMID: 26641092; PMCID: PMC4671683.
    8. Prencipe G, Caiello I, Cherqui S, Whisenant T, Petrini S, Emma F, De Benedetti F. Inflammasome activation by cystine crystals: implications for the pathogenesis of cystinosis. J Am Soc Nephrol. 2014 Jun; 25(6):1163-9. PMID: 24525029; PMCID: PMC4033370.
    9. Head SR, Komori HK, LaMere SA, Whisenant T, Van Nieuwerburgh F, Salomon DR, Ordoukhanian P. Library construction for next-generation sequencing: overviews and challenges. Biotechniques. 2014; 56(2):61-4, 66, 68, passim. PMID: 24502796; PMCID: PMC4351865.
    10. Gordon EA, Whisenant T, Zeller M, Kaake RM, Gordon WM, Krotee P, Patel V, Huang L, Baldi P, Bardwell L. Combining docking site and phosphosite predictions to find new substrates: identification of smoothelin-like-2 (SMTNL2) as a c-Jun N-terminal kinase (JNK) substrate. Cell Signal. 2013 Dec; 25(12):2518-29. PMID: 23981301; PMCID: PMC4132694.
    11. Whisenant T, Ho DT, Benz RW, Rogers JS, Kaake RM, Gordon EA, Huang L, Baldi P, Bardwell L. Computational prediction and experimental verification of new MAP kinase docking sites and substrates including Gli transcription factors. PLoS Comput Biol. 2010 Aug 26; 6(8). PMID: 20865152; PMCID: PMC2928751.
    12. Compani B, Su T, Chang I, Cheng J, Shah KH, Whisenant T, Dou Y, Bergmann A, Cheong R, Wold B, Bardwell L, Levchenko A, Baldi P, Mjolsness E. A scalable and integrative system for pathway bioinformatics and systems biology. Adv Exp Med Biol. 2010; 680:523-34. PMID: 20865537; PMCID: PMC3021415.
    13. Comelli EM, Sutton-Smith M, Yan Q, Amado M, Panico M, Gilmartin T, Whisenant T, Lanigan CM, Head SR, Goldberg D, Morris HR, Dell A, Paulson JC. Activation of murine CD4+ and CD8+ T lymphocytes leads to dramatic remodeling of N-linked glycans. J Immunol. 2006 Aug 15; 177(4):2431-40. PMID: 16888005.
      View in: PubMed
    14. Comelli EM, Head SR, Gilmartin T, Whisenant T, Haslam SM, North SJ, Wong NK, Kudo T, Narimatsu H, Esko JD, Drickamer K, Dell A, Paulson JC. A focused microarray approach to functional glycomics: transcriptional regulation of the glycome. Glycobiology. 2006 Feb; 16(2):117-31. PMID: 16237199.
      View in: PubMed
    15. Flechner SM, Kurian SM, Solez K, Cook DJ, Burke JT, Rollin H, Hammond JA, Whisenant T, Lanigan CM, Head SR, Salomon DR. De novo kidney transplantation without use of calcineurin inhibitors preserves renal structure and function at two years. Am J Transplant. 2004 Nov; 4(11):1776-85. PMID: 15476476.
      View in: PubMed
    16. Flechner SM, Kurian SM, Head SR, Sharp SM, Whisenant T, Zhang J, Chismar JD, Horvath S, Mondala T, Gilmartin T, Cook DJ, Kay SA, Walker JR, Salomon DR. Kidney transplant rejection and tissue injury by gene profiling of biopsies and peripheral blood lymphocytes. Am J Transplant. 2004 Sep; 4(9):1475-89. PMID: 15307835; PMCID: PMC2041877.
    17. Brown JR, Fuster MM, Whisenant T, Esko JD. Expression patterns of alpha 2,3-sialyltransferases and alpha 1,3-fucosyltransferases determine the mode of sialyl Lewis X inhibition by disaccharide decoys. J Biol Chem. 2003 Jun 27; 278(26):23352-9. PMID: 12686549.
      View in: PubMed
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