Ananda Goldrath

Title(s)Professor, Molecular Biology
SchoolVc-academic Affairs
Address9500 Gilman Drive #
La Jolla CA 92093
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    Collapse Research 
    Collapse Research Activities and Funding
    Molecular Determinants of Tissue-resident Memory T cell Fate in Acute and Chronic Infection
    NIH P01AI132122Jul 17, 2018 - Jun 30, 2023
    Role: Principal Investigator
    Mutagenic chain reaction-facilitated immunotherapy
    NIH R01AI131081Sep 9, 2016 - Aug 31, 2021
    Role: Principal Investigator
    Genetic screens for key transcriptional regulators of antiviral T cell immunity
    NIH U19AI109976Mar 1, 2014 - Feb 28, 2019
    Role: Co-Investigator
    Metabolic Regulation of T cell Immunity
    NIH R01AI096852Aug 1, 2012 - Jul 31, 2017
    Role: Principal Investigator
    Regulation of T cell immunity to viral infection
    NIH R01AI072117Dec 5, 2006 - Jun 30, 2023
    Role: Principal Investigator
    T cell maintenance: molecular mediators of T cell differentiation and survival
    NIH R01AI067545Dec 1, 2005 - Jun 30, 2022
    Role: Principal Investigator

    Collapse Bibliographic 
    Collapse Publications
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. T-bet deficiency and Hic1 induction override TGF-β-dependency in the formation of CD103+ intestine-resident memory CD8+ T cells. Cell Rep. 2024 Jun 25; 43(6):114258. Wang L, Mishra S, Fan KK, Quon S, Li G, Yu B, Liao W, Liu Y, Zhang X, Qiu Y, Li Y, Goldrath AW, Ma C, Zhang N. PMID: 38781073; PMCID: PMC11240284.
      View in: PubMed   Mentions:    Fields:    Translation:AnimalsCells
    2. Functional Diversity of Memory CD8 T Cells is Spatiotemporally Imprinted. bioRxiv. 2024 Mar 25. Reina-Campos M, Monell A, Ferry A, Luna V, Cheung KP, Galletti G, Scharping NE, Takehara KK, Quon S, Boland B, Lin YH, Wong WH, Indralingam CS, Yeo GW, Chang JT, Heeg M, Goldrath AW. PMID: 38585842; PMCID: PMC10996520.
      View in: PubMed   Mentions:
    3. Active maintenance of CD8+ T cell naivety through regulation of global genome architecture. Cell Rep. 2023 10 31; 42(10):113301. Russ BE, Barugahare A, Dakle P, Tsyganov K, Quon S, Yu B, Li J, Lee JKC, Olshansky M, He Z, Harrison PF, See M, Nussing S, Morey AE, Udupa VA, Bennett TJ, Kallies A, Murre C, Collas P, Powell D, Goldrath AW, Turner SJ. PMID: 37858463; PMCID: PMC10679840.
      View in: PubMed   Mentions: 2     Fields:    Translation:Cells
    4. Metabolic programs of T cell tissue residency empower tumour immunity. Nature. 2023 Sep; 621(7977):179-187. Reina-Campos M, Heeg M, Kennewick K, Mathews IT, Galletti G, Luna V, Nguyen Q, Huang H, Milner JJ, Hu KH, Vichaidit A, Santillano N, Boland BS, Chang JT, Jain M, Sharma S, Krummel MF, Chi H, Bensinger SJ, Goldrath AW. PMID: 37648857; PMCID: PMC11238873.
      View in: PubMed   Mentions: 15     Fields:    Translation:HumansAnimalsCells
    5. Insights into phenotypic and functional CD8+ TRM heterogeneity. Immunol Rev. 2023 07; 316(1):8-22. Heeg M, Goldrath AW. PMID: 37191051; PMCID: PMC10462388.
      View in: PubMed   Mentions: 7     Fields:    Translation:HumansCells
    6. Transcriptional programming of CD4+ TRM differentiation in viral infection balances effector- and memory-associated gene expression. Sci Immunol. 2023 05 12; 8(83):eabq7486. Nguyen QP, Takehara KK, Deng TZ, O'Shea S, Heeg M, Omilusik KD, Milner JJ, Quon S, Pipkin ME, Choi J, Crotty S, Goldrath AW. PMID: 37172104; PMCID: PMC10350289.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansCells
    7. Mll1 pioneers histone H3K4me3 deposition and promotes formation of CD8 + T stem cell memory. bioRxiv. 2023 Apr 15. Getzler AJ, Frederick MA, Milner JJ, Venables T, Diao H, Toma C, Nagaraja SD, Albao DS, Bélanger S, Tsuda SM, Kim J, Crotty S, Goldrath AW, Pipkin ME. PMID: 37090503; PMCID: PMC10120707.
      View in: PubMed   Mentions:
    8. DNA architectural protein CTCF facilitates subset-specific chromatin interactions to limit the formation of memory CD8+ T cells. Immunity. 2023 05 09; 56(5):959-978.e10. Quon S, Yu B, Russ BE, Tsyganov K, Nguyen H, Toma C, Heeg M, Hocker JD, Milner JJ, Crotty S, Pipkin ME, Turner SJ, Goldrath AW. PMID: 37040762; PMCID: PMC10265493.
      View in: PubMed   Mentions: 4     Fields:    Translation:HumansCells
    9. License to kill: Retinoic acid programs T cells for tissue residency. J Exp Med. 2023 05 01; 220(5). Heeg M, Goldrath AW. PMID: 36897330; PMCID: PMC10035436.
      View in: PubMed   Mentions: 1     Fields:    Translation:Cells
    10. Active maintenance of CD8+ T cell naïvety through regulation of global genome architecture. bioRxiv. 2023 Feb 27. Russ BE, Tsyganov K, Quon S, Yu B, Li J, Lee JKC, Olshansky M, He Z, Harrison PF, Barugahare A, See M, Nussing S, Morey AE, Udupa VA, Bennett TJ, Kallies A, Murre C, Collas P, Powell D, Goldrath AW, Turner SJ. PMID: 36909629; PMCID: PMC10002700.
      View in: PubMed   Mentions:
    11. Small intestine and colon tissue-resident memory CD8+ T cells exhibit molecular heterogeneity and differential dependence on Eomes. Immunity. 2023 01 10; 56(1):207-223.e8. Lin YH, Duong HG, Limary AE, Kim ES, Hsu P, Patel SA, Wong WH, Indralingam CS, Liu YC, Yao P, Chiang NR, Vandenburgh SA, Anderson TR, Olvera JG, Ferry A, Takehara KK, Jin W, Tsai MS, Yeo GW, Goldrath AW, Chang JT. PMID: 36580919; PMCID: PMC9904390.
      View in: PubMed   Mentions: 14     Fields:    Translation:Cells
    12. Systems-level identification of key transcription factors in immune cell specification. PLoS Comput Biol. 2022 09; 18(9):e1010116. Liu C, Omilusik K, Toma C, Kurd NS, Chang JT, Goldrath AW, Wang W. PMID: 36156073; PMCID: PMC9536753.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansAnimals
    13. Id3 expression identifies CD4+ memory Th1 cells. Proc Natl Acad Sci U S A. 2022 07 19; 119(29):e2204254119. Shaw LA, Deng TZ, Omilusik KD, Takehara KK, Nguyen QP, Goldrath AW. PMID: 35858332; PMCID: PMC9303986.
      View in: PubMed   Mentions: 7     Fields:    Translation:AnimalsCells
    14. Tissue-resident memory CD8+ T cells possess unique transcriptional, epigenetic and functional adaptations to different tissue environments. Nat Immunol. 2022 07; 23(7):1121-1131. Crowl JT, Heeg M, Ferry A, Milner JJ, Omilusik KD, Toma C, He Z, Chang JT, Goldrath AW. PMID: 35761084; PMCID: PMC10041538.
      View in: PubMed   Mentions: 63     Fields:    Translation:AnimalsCells
    15. The ImmGen consortium OpenSource T cell project. Nat Immunol. 2022 05; 23(5):643-644. Zemmour D, Goldrath A, Kronenberg M, Kang J, Benoist C. PMID: 35469020.
      View in: PubMed   Mentions: 2     Fields:    Translation:Cells
    16. Allelic variation in class I HLA determines CD8+ T cell repertoire shape and cross-reactive memory responses to SARS-CoV-2. Sci Immunol. 2022 01 21; 7(67):eabk3070. Francis JM, Leistritz-Edwards D, Dunn A, Tarr C, Lehman J, Dempsey C, Hamel A, Rayon V, Liu G, Wang Y, Wille M, Durkin M, Hadley K, Sheena A, Roscoe B, Ng M, Rockwell G, Manto M, Gienger E, Nickerson J, MGH COVID-19 Collection and Processing Team, Moarefi A, Noble M, Malia T, Bardwell PD, Gordon W, Swain J, Skoberne M, Sauer K, Harris T, Goldrath AW, Shalek AK, Coyle AJ, Benoist C, Pregibon DC. PMID: 34793243; PMCID: PMC9017864.
      View in: PubMed   Mentions: 43     Fields:    Translation:HumansCells
    17. Ubiquitin Specific Protease 1 Expression and Function in T Cell Immunity. J Immunol. 2021 09 01; 207(5):1377-1387. Omilusik KD, Nadjsombati MS, Yoshida TM, Shaw LA, Goulding J, Goldrath AW. PMID: 34380645; PMCID: PMC8387442.
      View in: PubMed   Mentions: 3     Fields:    Translation:AnimalsCellsPHPublic Health
    18. Bromodomain protein BRD4 directs and sustains CD8 T cell differentiation during infection. J Exp Med. 2021 08 02; 218(8). Milner JJ, Toma C, Quon S, Omilusik K, Scharping NE, Dey A, Reina-Campos M, Nguyen H, Getzler AJ, Diao H, Yu B, Delpoux A, Yoshida TM, Li D, Qi J, Vincek A, Hedrick SM, Egawa T, Zhou MM, Crotty S, Ozato K, Pipkin ME, Goldrath AW. PMID: 34037670; PMCID: PMC8160575.
      View in: PubMed   Mentions: 12     Fields:    Translation:AnimalsCells
    19. CD8+ T cell metabolism in infection and cancer. Nat Rev Immunol. 2021 11; 21(11):718-738. Reina-Campos M, Scharping NE, Goldrath AW. PMID: 33981085; PMCID: PMC8806153.
      View in: PubMed   Mentions: 144     Fields:    Translation:HumansAnimalsCells
    20. Uncoupling of macrophage inflammation from self-renewal modulates host recovery from respiratory viral infection. Immunity. 2021 06 08; 54(6):1200-1218.e9. Zhu B, Wu Y, Huang S, Zhang R, Son YM, Li C, Cheon IS, Gao X, Wang M, Chen Y, Zhou X, Nguyen Q, Phan AT, Behl S, Taketo MM, Mack M, Shapiro VS, Zeng H, Ebihara H, Mullon JJ, Edell ES, Reisenauer JS, Demirel N, Kern RM, Chakraborty R, Cui W, Kaplan MH, Zhou X, Goldrath AW, Sun J. PMID: 33951416; PMCID: PMC8192557.
      View in: PubMed   Mentions: 44     Fields:    Translation:HumansCells
    21. Hypoxia-inducible factor activity promotes antitumor effector function and tissue residency by CD8+ T cells. J Clin Invest. 2021 04 01; 131(7). Liikanen I, Lauhan C, Quon S, Omilusik K, Phan AT, Bartrolí LB, Ferry A, Goulding J, Chen J, Scott-Browne JP, Yustein JT, Scharping NE, Witherden DA, Goldrath AW. PMID: 33792560; PMCID: PMC8011896.
      View in: PubMed   Mentions: 51     Fields:    Translation:AnimalsCells
    22. Delineation of a molecularly distinct terminally differentiated memory CD8 T cell population. Proc Natl Acad Sci U S A. 2020 10 13; 117(41):25667-25678. Milner JJ, Nguyen H, Omilusik K, Reina-Campos M, Tsai M, Toma C, Delpoux A, Boland BS, Hedrick SM, Chang JT, Goldrath AW. PMID: 32978300; PMCID: PMC7568335.
      View in: PubMed   Mentions: 50     Fields:    Translation:HumansAnimalsCells
    23. Heterogeneity and clonal relationships of adaptive immune cells in ulcerative colitis revealed by single-cell analyses. Sci Immunol. 2020 08 21; 5(50). Boland BS, He Z, Tsai MS, Olvera JG, Omilusik KD, Duong HG, Kim ES, Limary AE, Jin W, Milner JJ, Yu B, Patel SA, Louis TL, Tysl T, Kurd NS, Bortnick A, Quezada LK, Kanbar JN, Miralles A, Huylebroeck D, Valasek MA, Dulai PS, Singh S, Lu LF, Bui JD, Murre C, Sandborn WJ, Goldrath AW, Yeo GW, Chang JT. PMID: 32826341; PMCID: PMC7733868.
      View in: PubMed   Mentions: 98     Fields:    Translation:HumansAnimalsCells
    24. Bcl-6 is the nexus transcription factor of T follicular helper cells via repressor-of-repressor circuits. Nat Immunol. 2020 07; 21(7):777-789. Choi J, Diao H, Faliti CE, Truong J, Rossi M, Bélanger S, Yu B, Goldrath AW, Pipkin ME, Crotty S. PMID: 32572238; PMCID: PMC7449381.
      View in: PubMed   Mentions: 59     Fields:    Translation:HumansAnimalsCells
    25. Heterogenous Populations of Tissue-Resident CD8+ T Cells Are Generated in Response to Infection and Malignancy. Immunity. 2020 05 19; 52(5):808-824.e7. Milner JJ, Toma C, He Z, Kurd NS, Nguyen QP, McDonald B, Quezada L, Widjaja CE, Witherden DA, Crowl JT, Shaw LA, Yeo GW, Chang JT, Omilusik KD, Goldrath AW. PMID: 32433949; PMCID: PMC7784612.
      View in: PubMed   Mentions: 112     Fields:    Translation:AnimalsCells
    26. Early precursors and molecular determinants of tissue-resident memory CD8+ T lymphocytes revealed by single-cell RNA sequencing. Sci Immunol. 2020 05 15; 5(47). Kurd NS, He Z, Louis TL, Milner JJ, Omilusik KD, Jin W, Tsai MS, Widjaja CE, Kanbar JN, Olvera JG, Tysl T, Quezada LK, Boland BS, Huang WJ, Murre C, Goldrath AW, Yeo GW, Chang JT. PMID: 32414833; PMCID: PMC7341730.
      View in: PubMed   Mentions: 90     Fields:    Translation:HumansAnimalsCells
    27. Reinvigorating NIH Grant Peer Review. Immunity. 2020 01 14; 52(1):1-3. Crotty S, Blish C, Cadwell K, Chi H, Goldrath A, Green D, Kaech SM, Krummel M, Pepper M, Rothlin CV, Wherry EJ, Once-a-Year Pledge Supporters. PMID: 31940266.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    28. Universal Principled Review: A Community-Driven Method to Improve Peer Review. Cell. 2019 Dec 12; 179(7):1441-1445. Krummel M, Blish C, Kuhns M, Cadwell K, Oberst A, Goldrath A, Ansel KM, Chi H, O'Connell R, Wherry EJ, Pepper M, Future Immunology Consortium. PMID: 31835023.
      View in: PubMed   Mentions: 3     Fields:    
    29. Antitumour T cells stand the test of time. Nature. 2019 12; 576(7787):392-393. Reina-Campos M, Goldrath AW. PMID: 31844255.
      View in: PubMed   Mentions: 2     Fields:    Translation:HumansCells
    30. Remembering to remember: T cell memory maintenance and plasticity. Curr Opin Immunol. 2019 06; 58:89-97. Omilusik KD, Goldrath AW. PMID: 31170601; PMCID: PMC6612439.
      View in: PubMed   Mentions: 33     Fields:    Translation:HumansAnimalsCells
    31. T-bet Transcription Factor Promotes Antibody-Secreting Cell Differentiation by Limiting the Inflammatory Effects of IFN-γ on B Cells. Immunity. 2019 05 21; 50(5):1172-1187.e7. Stone SL, Peel JN, Scharer CD, Risley CA, Chisolm DA, Schultz MD, Yu B, Ballesteros-Tato A, Wojciechowski W, Mousseau B, Misra RS, Hanidu A, Jiang H, Qi Z, Boss JM, Randall TD, Brodeur SR, Goldrath AW, Weinmann AS, Rosenberg AF, Lund FE. PMID: 31076359; PMCID: PMC6929688.
      View in: PubMed   Mentions: 61     Fields:    Translation:AnimalsCells
    32. Origins of CD4+ circulating and tissue-resident memory T-cells. Immunology. 2019 05; 157(1):3-12. Nguyen QP, Deng TZ, Witherden DA, Goldrath AW. PMID: 30897205; PMCID: PMC6459775.
      View in: PubMed   Mentions: 71     Fields:    Translation:HumansAnimalsCells
    33. The Transcription Factor Zfx Regulates Peripheral T Cell Self-Renewal and Proliferation. Front Immunol. 2018; 9:1482. Smith-Raska MR, Arenzana TL, D'Cruz LM, Khodadadi-Jamayran A, Tsirigos A, Goldrath AW, Reizis B. PMID: 30022979; PMCID: PMC6039547.
      View in: PubMed   Mentions: 5     Fields:    
    34. The Transcription Factor Runx3 Establishes Chromatin Accessibility of cis-Regulatory Landscapes that Drive Memory Cytotoxic T Lymphocyte Formation. Immunity. 2018 04 17; 48(4):659-674.e6. Wang D, Diao H, Getzler AJ, Rogal W, Frederick MA, Milner J, Yu B, Crotty S, Goldrath AW, Pipkin ME. PMID: 29669249; PMCID: PMC6750808.
      View in: PubMed   Mentions: 85     Fields:    Translation:HumansAnimalsCells
    35. Transcriptional programming of tissue-resident memory CD8+ T cells. Curr Opin Immunol. 2018 04; 51:162-169. Milner JJ, Goldrath AW. PMID: 29621697; PMCID: PMC5943164.
      View in: PubMed   Mentions: 69     Fields:    Translation:HumansAnimalsCells
    36. Sustained Id2 regulation of E proteins is required for terminal differentiation of effector CD8+ T cells. J Exp Med. 2018 03 05; 215(3):773-783. Omilusik KD, Nadjsombati MS, Shaw LA, Yu B, Milner JJ, Goldrath AW. PMID: 29440362; PMCID: PMC5839762.
      View in: PubMed   Mentions: 45     Fields:    Translation:AnimalsCells
    37. Erratum: Runx3 programs CD8+ T cell residency in non-lymphoid tissues and tumours. Nature. 2018 02 15; 554(7692):392. Milner JJ, Toma C, Yu B, Zhang K, Omilusik K, Phan AT, Wang D, Getzler AJ, Nguyen T, Crotty S, Wang W, Pipkin ME, Goldrath AW. PMID: 29320476.
      View in: PubMed   Mentions: 5     Fields:    
    38. Continuous activity of Foxo1 is required to prevent anergy and maintain the memory state of CD8+ T cells. J Exp Med. 2018 02 05; 215(2):575-594. Delpoux A, Michelini RH, Verma S, Lai CY, Omilusik KD, Utzschneider DT, Redwood AJ, Goldrath AW, Benedict CA, Hedrick SM. PMID: 29282254; PMCID: PMC5789410.
      View in: PubMed   Mentions: 45     Fields:    Translation:AnimalsCells
    39. The origins of memory T cells. Nature. 2017 12 21; 552(7685):337-339. Omilusik KD, Goldrath AW. PMID: 29293221.
      View in: PubMed   Mentions:    Fields:    Translation:HumansCells
    40. Runx3 programs CD8+ T cell residency in non-lymphoid tissues and tumours. Nature. 2017 12 14; 552(7684):253-257. Milner JJ, Toma C, Yu B, Zhang K, Omilusik K, Phan AT, Wang D, Getzler AJ, Nguyen T, Crotty S, Wang W, Pipkin ME, Goldrath AW. PMID: 29211713; PMCID: PMC5747964.
      View in: PubMed   Mentions: 320     Fields:    Translation:HumansAnimalsCells
    41. The origins of memory T cells. Nature. 2017 Dec; 552(7685):337-339. Omilusik KD, Goldrath AW. PMID: 32080617.
      View in: PubMed   Mentions: 10     Fields:    
    42. An HIF-1α/VEGF-A Axis in Cytotoxic T Cells Regulates Tumor Progression. Cancer Cell. 2017 11 13; 32(5):669-683.e5. Palazon A, Tyrakis PA, Macias D, Veliça P, Rundqvist H, Fitzpatrick S, Vojnovic N, Phan AT, Loman N, Hedenfalk I, Hatschek T, Lövrot J, Foukakis T, Goldrath AW, Bergh J, Johnson RS. PMID: 29136509; PMCID: PMC5691891.
      View in: PubMed   Mentions: 238     Fields:    Translation:HumansAnimalsCells
    43. Proteasome activity regulates CD8+ T lymphocyte metabolism and fate specification. J Clin Invest. 2017 Oct 02; 127(10):3609-3623. Widjaja CE, Olvera JG, Metz PJ, Phan AT, Savas JN, de Bruin G, Leestemaker Y, Berkers CR, de Jong A, Florea BI, Fisch K, Lopez J, Kim SH, Garcia DA, Searles S, Bui JD, Chang AN, Yates JR, Goldrath AW, Overkleeft HS, Ovaa H, Chang JT. PMID: 28846070; PMCID: PMC5617668.
      View in: PubMed   Mentions: 26     Fields:    Translation:AnimalsCells
    44. Erratum: Epigenetic landscapes reveal transcription factors that regulate CD8+ T cell differentiation. Nat Immunol. 2017 05 18; 18(6):705. Yu B, Zhang K, Milner JJ, Toma C, Chen R, Scott-Browne JP, Pereira RM, Crotty S, Chang JT, Pipkin ME, Wang W, Goldrath AW. PMID: 28518161.
      View in: PubMed   Mentions: 6     Fields:    
    45. Metabolic and Epigenetic Coordination of T Cell and Macrophage Immunity. Immunity. 2017 05 16; 46(5):714-729. Phan AT, Goldrath AW, Glass CK. PMID: 28514673; PMCID: PMC5505665.
      View in: PubMed   Mentions: 145     Fields:    Translation:HumansAnimalsCells
    46. Epigenetic landscapes reveal transcription factors that regulate CD8+ T cell differentiation. Nat Immunol. 2017 05; 18(5):573-582. Yu B, Zhang K, Milner JJ, Toma C, Chen R, Scott-Browne JP, Pereira RM, Crotty S, Chang JT, Pipkin ME, Wang W, Goldrath AW. PMID: 28288100; PMCID: PMC5395420.
      View in: PubMed   Mentions: 118     Fields:    Translation:AnimalsCells
    47. Early transcriptional and epigenetic regulation of CD8+ T cell differentiation revealed by single-cell RNA sequencing. Nat Immunol. 2017 04; 18(4):422-432. Kakaradov B, Arsenio J, Widjaja CE, He Z, Aigner S, Metz PJ, Yu B, Wehrens EJ, Lopez J, Kim SH, Zuniga EI, Goldrath AW, Chang JT, Yeo GW. PMID: 28218746; PMCID: PMC5360497.
      View in: PubMed   Mentions: 111     Fields:    Translation:AnimalsCells
    48. Constitutive Glycolytic Metabolism Supports CD8+ T Cell Effector Memory Differentiation during Viral Infection. Immunity. 2016 11 15; 45(5):1024-1037. Phan AT, Doedens AL, Palazon A, Tyrakis PA, Cheung KP, Johnson RS, Goldrath AW. PMID: 27836431; PMCID: PMC5130099.
      View in: PubMed   Mentions: 113     Fields:    Translation:AnimalsCells
    49. S-2-hydroxyglutarate regulates CD8+ T-lymphocyte fate. Nature. 2016 12 08; 540(7632):236-241. Tyrakis PA, Palazon A, Macias D, Lee KL, Phan AT, Veliça P, You J, Chia GS, Sim J, Doedens A, Abelanet A, Evans CE, Griffiths JR, Poellinger L, Goldrath AW, Johnson RS. PMID: 27798602; PMCID: PMC5149074.
      View in: PubMed   Mentions: 204     Fields:    Translation:AnimalsCells
    50. Oxygen Sensing by T Cells Establishes an Immunologically Tolerant Metastatic Niche. Cell. 2016 Aug 25; 166(5):1117-1131.e14. Clever D, Roychoudhuri R, Constantinides MG, Askenase MH, Sukumar M, Klebanoff CA, Eil RL, Hickman HD, Yu Z, Pan JH, Palmer DC, Phan AT, Goulding J, Gattinoni L, Goldrath AW, Belkaid Y, Restifo NP. PMID: 27565342; PMCID: PMC5548538.
      View in: PubMed   Mentions: 133     Fields:    Translation:AnimalsCells
    51. Molecular Programming of Tumor-Infiltrating CD8+ T Cells and IL15 Resistance. Cancer Immunol Res. 2016 09 02; 4(9):799-811. Doedens AL, Rubinstein MP, Gross ET, Best JA, Craig DH, Baker MK, Cole DJ, Bui JD, Goldrath AW. PMID: 27485135; PMCID: PMC5010943.
      View in: PubMed   Mentions: 16     Fields:    Translation:AnimalsCells
    52. Id2 reinforces TH1 differentiation and inhibits E2A to repress TFH differentiation. Nat Immunol. 2016 07; 17(7):834-43. Shaw LA, Bélanger S, Omilusik KD, Cho S, Scott-Browne JP, Nance JP, Goulding J, Lasorella A, Lu LF, Crotty S, Goldrath AW. PMID: 27213691; PMCID: PMC4915968.
      View in: PubMed   Mentions: 67     Fields:    Translation:AnimalsCells
    53. Id2 regulates hyporesponsive invariant natural killer T cells. Immunol Cell Biol. 2016 08; 94(7):640-5. Stradner MH, Cheung KP, Lasorella A, Goldrath AW, D'Cruz LM. PMID: 26880074; PMCID: PMC4980213.
      View in: PubMed   Mentions: 3     Fields:    Translation:AnimalsCells
    54. Single-Cell Gene Expression Analyses Reveal Heterogeneous Responsiveness of Fetal Innate Lymphoid Progenitors to Notch Signaling. Cell Rep. 2016 Feb 16; 14(6):1500-1516. Chea S, Schmutz S, Berthault C, Perchet T, Petit M, Burlen-Defranoux O, Goldrath AW, Rodewald HR, Cumano A, Golub R. PMID: 26832410.
      View in: PubMed   Mentions: 48     Fields:    Translation:AnimalsCells
    55. B-cell survival and development controlled by the coordination of NF-κB family members RelB and cRel. Blood. 2016 Mar 10; 127(10):1276-86. Almaden JV, Liu YC, Yang E, Otero DC, Birnbaum H, Davis-Turak J, Asagiri M, David M, Goldrath AW, Hoffmann A. PMID: 26773039; PMCID: PMC4786837.
      View in: PubMed   Mentions: 21     Fields:    Translation:AnimalsCells
    56. IL-2Rα mediates temporal regulation of IL-2 signaling and enhances immunotherapy. Sci Transl Med. 2015 Oct 28; 7(311):311ra170. Su EW, Moore CJ, Suriano S, Johnson CB, Songalia N, Patterson A, Neitzke DJ, Andrijauskaite K, Garrett-Mayer E, Mehrotra S, Paulos CM, Doedens AL, Goldrath AW, Li Z, Cole DJ, Rubinstein MP. PMID: 26511507; PMCID: PMC4805116.
      View in: PubMed   Mentions: 31     Fields:    Translation:AnimalsCells
    57. Transcriptional repressor ZEB2 promotes terminal differentiation of CD8+ effector and memory T cell populations during infection. J Exp Med. 2015 Nov 16; 212(12):2027-39. Omilusik KD, Best JA, Yu B, Goossens S, Weidemann A, Nguyen JV, Seuntjens E, Stryjewska A, Zweier C, Roychoudhuri R, Gattinoni L, Bird LM, Higashi Y, Kondoh H, Huylebroeck D, Haigh J, Goldrath AW. PMID: 26503445; PMCID: PMC4647262.
      View in: PubMed   Mentions: 114     Fields:    Translation:HumansAnimalsCells
    58. Hypoxia-inducible factors regulate T cell metabolism and function. Mol Immunol. 2015 Dec; 68(2 Pt C):527-35. Phan AT, Goldrath AW. PMID: 26298577; PMCID: PMC4679538.
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    59. ICOS coreceptor signaling inactivates the transcription factor FOXO1 to promote Tfh cell differentiation. Immunity. 2015 Feb 17; 42(2):239-251. Stone EL, Pepper M, Katayama CD, Kerdiles YM, Lai CY, Emslie E, Lin YC, Yang E, Goldrath AW, Li MO, Cantrell DA, Hedrick SM. PMID: 25692700; PMCID: PMC4334393.
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    60. ZEB2 drives immature T-cell lymphoblastic leukaemia development via enhanced tumour-initiating potential and IL-7 receptor signalling. Nat Commun. 2015 Jan 07; 6:5794. Goossens S, Radaelli E, Blanchet O, Durinck K, Van der Meulen J, Peirs S, Taghon T, Tremblay CS, Costa M, Farhang Ghahremani M, De Medts J, Bartunkova S, Haigh K, Schwab C, Farla N, Pieters T, Matthijssens F, Van Roy N, Best JA, Deswarte K, Bogaert P, Carmichael C, Rickard A, Suryani S, Bracken LS, Alserihi R, Canté-Barrett K, Haenebalcke L, Clappier E, Rondou P, Slowicka K, Huylebroeck D, Goldrath AW, Janzen V, McCormack MP, Lock RB, Curtis DJ, Harrison C, Berx G, Speleman F, Meijerink JP, Soulier J, Van Vlierberghe P, Haigh JJ. PMID: 25565005; PMCID: PMC4354161.
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    61. Molecular regulation of effector and memory T cell differentiation. Nat Immunol. 2014 Dec; 15(12):1104-15. Chang JT, Wherry EJ, Goldrath AW. PMID: 25396352; PMCID: PMC4386685.
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    62. The TCR's sensitivity to self peptide-MHC dictates the ability of naive CD8(+) T cells to respond to foreign antigens. Nat Immunol. 2015 Jan; 16(1):107-17. Fulton RB, Hamilton SE, Xing Y, Best JA, Goldrath AW, Hogquist KA, Jameson SC. PMID: 25419629; PMCID: PMC4270846.
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    63. HIF transcription factors, inflammation, and immunity. Immunity. 2014 Oct 16; 41(4):518-28. Palazon A, Goldrath AW, Nizet V, Johnson RS. PMID: 25367569; PMCID: PMC4346319.
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    64. E and Id proteins influence invariant NKT cell sublineage differentiation and proliferation. J Immunol. 2014 Mar 01; 192(5):2227-36. D'Cruz LM, Stradner MH, Yang CY, Goldrath AW. PMID: 24470501; PMCID: PMC3943952.
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    65. An effective approach to prevent immune rejection of human ESC-derived allografts. Cell Stem Cell. 2014 Jan 02; 14(1):121-30. Rong Z, Wang M, Hu Z, Stradner M, Zhu S, Kong H, Yi H, Goldrath A, Yang YG, Xu Y, Fu X. PMID: 24388175; PMCID: PMC4023958.
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    66. HIF isoforms in the skin differentially regulate systemic arterial pressure. Proc Natl Acad Sci U S A. 2013 Oct 22; 110(43):17570-5. Cowburn AS, Takeda N, Boutin AT, Kim JW, Sterling JC, Nakasaki M, Southwood M, Goldrath AW, Jamora C, Nizet V, Chilvers ER, Johnson RS. PMID: 24101470; PMCID: PMC3808605.
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    67. G-CSF/anti-G-CSF antibody complexes drive the potent recovery and expansion of CD11b+Gr-1+ myeloid cells without compromising CD8+ T cell immune responses. J Hematol Oncol. 2013 Oct 01; 6:75. Rubinstein MP, Salem ML, Doedens AL, Moore CJ, Chiuzan C, Rivell GL, Cole DJ, Goldrath AW. PMID: 24279871; PMCID: PMC3850648.
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    68. Remembering one's ID/E-ntity: E/ID protein regulation of T cell memory. Curr Opin Immunol. 2013 Oct; 25(5):660-6. Omilusik KD, Shaw LA, Goldrath AW. PMID: 24094885; PMCID: PMC3839785.
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    69. Hypoxia-inducible factors enhance the effector responses of CD8(+) T cells to persistent antigen. Nat Immunol. 2013 Nov; 14(11):1173-82. Doedens AL, Phan AT, Stradner MH, Fujimoto JK, Nguyen JV, Yang E, Johnson RS, Goldrath AW. PMID: 24076634; PMCID: PMC3977965.
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    70. IL-25 simultaneously elicits distinct populations of innate lymphoid cells and multipotent progenitor type 2 (MPPtype2) cells. J Exp Med. 2013 Aug 26; 210(9):1823-37. Saenz SA, Siracusa MC, Monticelli LA, Ziegler CG, Kim BS, Brestoff JR, Peterson LW, Wherry EJ, Goldrath AW, Bhandoola A, Artis D. PMID: 23960191; PMCID: PMC3754870.
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    71. Differentiation of CD8 memory T cells depends on Foxo1. J Exp Med. 2013 Jun 03; 210(6):1189-200. Hess Michelini R, Doedens AL, Goldrath AW, Hedrick SM. PMID: 23712431; PMCID: PMC3674697.
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    72. The transcriptional landscape of αβ T cell differentiation. Nat Immunol. 2013 Jun; 14(6):619-32. Mingueneau M, Kreslavsky T, Gray D, Heng T, Cruse R, Ericson J, Bendall S, Spitzer MH, Nolan GP, Kobayashi K, von Boehmer H, Mathis D, Benoist C, Immunological Genome Consortium, Best AJ, Knell J, Goldrath A, Joic V, Koller D, Shay T, Regev A, Cohen N, Brennan P, Brenner M, Kim F, Nageswara Rao T, Wagers A, Heng T, Ericson J, Rothamel K, Ortiz-Lopez A, Mathis D, Benoist C, Bezman NA, Sun JC, Min-Oo G, Kim CC, Lanier LL, Miller J, Brown B, Merad M, Gautier EL, Jakubzick C, Randolph GJ, Monach P, Blair DA, Dustin ML, Shinton SA, Hardy RR, Laidlaw D, Collins J, Gazit R, Rossi DJ, Malhotra N, Sylvia K, Kang J, Kreslavsky T, Fletcher A, Elpek K, Bellemare-Pelletier A, Malhotra D, Turley S. PMID: 23644507; PMCID: PMC3660436.
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    73. Identification of transcriptional regulators in the mouse immune system. Nat Immunol. 2013 Jun; 14(6):633-43. Jojic V, Shay T, Sylvia K, Zuk O, Sun X, Kang J, Regev A, Koller D, Immunological Genome Project Consortium, Best AJ, Knell J, Goldrath A, Joic V, Koller D, Shay T, Regev A, Cohen N, Brennan P, Brenner M, Kim F, Rao TN, Wagers A, Heng T, Ericson J, Rothamel K, Ortiz-Lopez A, Mathis D, Benoist C, Bezman NA, Sun JC, Min-Oo G, Kim CC, Lanier LL, Miller J, Brown B, Merad M, Gautier EL, Jakubzick C, Randolph GJ, Monach P, Blair DA, Dustin ML, Shinton SA, Hardy RR, Laidlaw D, Collins J, Gazit R, Rossi DJ, Malhotra N, Sylvia K, Kang J, Kreslavsky T, Fletcher A, Elpek K, Bellemarte-Pelletier A, Malhotra D, Turley S. PMID: 23624555; PMCID: PMC3690947.
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    74. Transcriptional insights into the CD8(+) T cell response to infection and memory T cell formation. Nat Immunol. 2013 Apr; 14(4):404-12. Best JA, Blair DA, Knell J, Yang E, Mayya V, Doedens A, Dustin ML, Goldrath AW, Immunological Genome Project Consortium. PMID: 23396170; PMCID: PMC3689652.
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    75. Id2 influences differentiation of killer cell lectin-like receptor G1(hi) short-lived CD8+ effector T cells. J Immunol. 2013 Feb 15; 190(4):1501-9. Knell J, Best JA, Lind NA, Yang E, D'Cruz LM, Goldrath AW. PMID: 23325888; PMCID: PMC3563862.
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    76. The signal transducers STAT5 and STAT3 control expression of Id2 and E2-2 during dendritic cell development. Blood. 2012 Nov 22; 120(22):4363-73. Li HS, Yang CY, Nallaparaju KC, Zhang H, Liu YJ, Goldrath AW, Watowich SS. PMID: 23033267; PMCID: PMC3507145.
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    77. FOXO transcription factors throughout T cell biology. Nat Rev Immunol. 2012 Sep; 12(9):649-61. Hedrick SM, Hess Michelini R, Doedens AL, Goldrath AW, Stone EL. PMID: 22918467; PMCID: PMC3875397.
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    78. Molecular definition of the identity and activation of natural killer cells. Nat Immunol. 2012 Oct; 13(10):1000-9. Bezman NA, Kim CC, Sun JC, Min-Oo G, Hendricks DW, Kamimura Y, Best JA, Goldrath AW, Lanier LL, Immunological Genome Project Consortium. PMID: 22902830; PMCID: PMC3572860.
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    79. Loss of E protein transcription factors E2A and HEB delays memory-precursor formation during the CD8+ T-cell immune response. Eur J Immunol. 2012 Aug; 42(8):2031-41. D'Cruz LM, Lind KC, Wu BB, Fujimoto JK, Goldrath AW. PMID: 22585759; PMCID: PMC3702188.
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    80. The transcriptional regulators Id2 and Id3 control the formation of distinct memory CD8+ T cell subsets. Nat Immunol. 2011 Nov 06; 12(12):1221-9. Yang CY, Best JA, Knell J, Yang E, Sheridan AD, Jesionek AK, Li HS, Rivera RR, Lind KC, D'Cruz LM, Watowich SS, Murre C, Goldrath AW. PMID: 22057289; PMCID: PMC3872000.
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    81. Innate lymphoid cells promote lung-tissue homeostasis after infection with influenza virus. Nat Immunol. 2011 Nov; 12(11):1045-54. Monticelli LA, Sonnenberg GF, Abt MC, Alenghat T, Ziegler CG, Doering TA, Angelosanto JM, Laidlaw BJ, Yang CY, Sathaliyawala T, Kubota M, Turner D, Diamond JM, Goldrath AW, Farber DL, Collman RG, Wherry EJ, Artis D. PMID: 21946417; PMCID: PMC3320042.
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    82. Mature natural killer cells with phenotypic and functional alterations accumulate upon sustained stimulation with IL-15/IL-15Ralpha complexes. Proc Natl Acad Sci U S A. 2010 Dec 14; 107(50):21647-52. Elpek KG, Rubinstein MP, Bellemare-Pelletier A, Goldrath AW, Turley SJ. PMID: 21098276; PMCID: PMC3003106.
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    83. Macrophage expression of hypoxia-inducible factor-1 alpha suppresses T-cell function and promotes tumor progression. Cancer Res. 2010 Oct 01; 70(19):7465-75. Doedens AL, Stockmann C, Rubinstein MP, Liao D, Zhang N, DeNardo DG, Coussens LM, Karin M, Goldrath AW, Johnson RS. PMID: 20841473; PMCID: PMC2948598.
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    84. Transcriptional regulation of NKT cell development and homeostasis. Curr Opin Immunol. 2010 Apr; 22(2):199-205. D'Cruz LM, Yang CY, Goldrath AW. PMID: 20171073; PMCID: PMC2854242.
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    85. An essential role for the transcription factor HEB in thymocyte survival, Tcra rearrangement and the development of natural killer T cells. Nat Immunol. 2010 Mar; 11(3):240-9. D'Cruz LM, Knell J, Fujimoto JK, Goldrath AW. PMID: 20154672; PMCID: PMC2993240.
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    86. Transcriptional regulator Id2 controls survival of hepatic NKT cells. Proc Natl Acad Sci U S A. 2009 Nov 17; 106(46):19461-6. Monticelli LA, Yang Y, Knell J, D'Cruz LM, Cannarile MA, Engel I, Kronenberg M, Goldrath AW. PMID: 19884494; PMCID: PMC2780802.
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    87. Memory-like CD8+ T cells generated during homeostatic proliferation defer to antigen-experienced memory cells. J Immunol. 2009 Sep 01; 183(5):3364-72. Cheung KP, Yang E, Goldrath AW. PMID: 19675163; PMCID: PMC2866069.
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    88. Surviving the crash: transitioning from effector to memory CD8+ T cell. Semin Immunol. 2009 Apr; 21(2):92-8. D'Cruz LM, Rubinstein MP, Goldrath AW. PMID: 19269192; PMCID: PMC2671236.
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    89. IL-7 and IL-15 differentially regulate CD8+ T-cell subsets during contraction of the immune response. Blood. 2008 Nov 01; 112(9):3704-12. Rubinstein MP, Lind NA, Purton JF, Filippou P, Best JA, McGhee PA, Surh CD, Goldrath AW. PMID: 18689546; PMCID: PMC2572798.
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    90. Inhibitor of DNA binding 2 is a small molecule-inducible modulator of peroxisome proliferator-activated receptor-gamma expression and adipocyte differentiation. Mol Endocrinol. 2008 Sep; 22(9):2038-48. Park KW, Waki H, Villanueva CJ, Monticelli LA, Hong C, Kang S, MacDougald OA, Goldrath AW, Tontonoz P. PMID: 18562627; PMCID: PMC2631374.
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    91. Interleukin-15/interleukin-15R alpha complexes promote destruction of established tumors by reviving tumor-resident CD8+ T cells. Cancer Res. 2008 Apr 15; 68(8):2972-83. Epardaud M, Elpek KG, Rubinstein MP, Yonekura AR, Bellemare-Pelletier A, Bronson R, Hamerman JA, Goldrath AW, Turley SJ. PMID: 18413767.
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    92. Transcriptional regulator Id2 mediates CD8+ T cell immunity. Nat Immunol. 2006 Dec; 7(12):1317-25. Cannarile MA, Lind NA, Rivera R, Sheridan AD, Camfield KA, Wu BB, Cheung KP, Ding Z, Goldrath AW. PMID: 17086188.
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    93. Gene expression microarrays: glimpses of the immunological genome. Nat Immunol. 2006 Jul; 7(7):686-91. Hyatt G, Melamed R, Park R, Seguritan R, Laplace C, Poirot L, Zucchelli S, Obst R, Matos M, Venanzi E, Goldrath A, Nguyen L, Luckey J, Yamagata T, Herman A, Jacobs J, Mathis D, Benoist C. PMID: 16785882.
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    94. E proteins and Notch signaling cooperate to promote T cell lineage specification and commitment. J Exp Med. 2006 May 15; 203(5):1329-42. Ikawa T, Kawamoto H, Goldrath AW, Murre C. PMID: 16682500; PMCID: PMC2121213.
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    95. Memory T and memory B cells share a transcriptional program of self-renewal with long-term hematopoietic stem cells. Proc Natl Acad Sci U S A. 2006 Feb 28; 103(9):3304-9. Luckey CJ, Bhattacharya D, Goldrath AW, Weissman IL, Benoist C, Mathis D. PMID: 16492737; PMCID: PMC1413911.
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    96. Effector and memory CD8+ T cell fate coupled by T-bet and eomesodermin. Nat Immunol. 2005 Dec; 6(12):1236-44. Intlekofer AM, Takemoto N, Wherry EJ, Longworth SA, Northrup JT, Palanivel VR, Mullen AC, Gasink CR, Kaech SM, Miller JD, Gapin L, Ryan K, Russ AP, Lindsten T, Orange JS, Goldrath AW, Ahmed R, Reiner SL. PMID: 16273099.
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    97. Central tolerance matters. Immunity. 2005 Aug; 23(2):113-4. Goldrath AW, Hedrick SM. PMID: 16111630.
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    98. The molecular program induced in T cells undergoing homeostatic proliferation. Proc Natl Acad Sci U S A. 2004 Nov 30; 101(48):16885-90. Goldrath AW, Luckey CJ, Park R, Benoist C, Mathis D. PMID: 15548615; PMCID: PMC534746.
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    99. Cytokine requirements for acute and Basal homeostatic proliferation of naive and memory CD8+ T cells. J Exp Med. 2002 Jun 17; 195(12):1515-22. Goldrath AW, Sivakumar PV, Glaccum M, Kennedy MK, Bevan MJ, Benoist C, Mathis D, Butz EA. PMID: 12070279; PMCID: PMC2193554.
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    100. Maintaining the status quo: T-cell homeostasis. Microbes Infect. 2002 Apr; 4(5):539-45. Goldrath AW. PMID: 11959509.
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    101. Naive T cells transiently acquire a memory-like phenotype during homeostasis-driven proliferation. J Exp Med. 2000 Aug 21; 192(4):557-64. Goldrath AW, Bogatzki LY, Bevan MJ. PMID: 10952725; PMCID: PMC2193243.
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    102. Competition for specific intrathymic ligands limits positive selection in a TCR transgenic model of CD4+ T cell development. J Immunol. 2000 Jun 15; 164(12):6252-9. Wong P, Goldrath AW, Rudensky AY. PMID: 10843678.
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    103. T-cell memory: You must remember this ... Curr Biol. 2000 May 04; 10(9):R338-40. Bevan MJ, Goldrath AW. PMID: 10801433.
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    104. Selecting and maintaining a diverse T-cell repertoire. Nature. 1999 Nov 18; 402(6759):255-62. Goldrath AW, Bevan MJ. PMID: 10580495.
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    105. Low-affinity ligands for the TCR drive proliferation of mature CD8+ T cells in lymphopenic hosts. Immunity. 1999 Aug; 11(2):183-90. Goldrath AW, Bevan MJ. PMID: 10485653; PMCID: PMC2789737.
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    106. Triggers of autoimmune disease in a murine TCR-transgenic model for multiple sclerosis. J Immunol. 1997 Jul 01; 159(1):497-507. Brabb T, Goldrath AW, von Dassow P, Paez A, Liggitt HD, Goverman J. PMID: 9200491.
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    107. CD8 lineage commitment in the absence of CD8. Immunity. 1997 May; 6(5):633-42. Goldrath AW, Hogquist KA, Bevan MJ. PMID: 9175841; PMCID: PMC2782926.
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    108. Virus-mediated delivery of antigenic epitopes into dendritic cells as a means to induce CTL. J Immunol. 1997 Apr 01; 158(7):3270-6. Brossart P, Goldrath AW, Butz EA, Martin S, Bevan MJ. PMID: 9120283.
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    109. T cell recognition of major histocompatibility complex class II complexes with invariant chain processing intermediates. J Exp Med. 1995 Nov 01; 182(5):1403-13. Morkowski S, Goldrath AW, Eastman S, Ramachandra L, Freed DC, Whiteley P. PMID: 7595211; PMCID: PMC2192223.
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    110. Differences in adhesion markers, activation markers, and TcR in islet infiltrating vs. peripheral lymphocytes in the NOD mouse. J Autoimmun. 1995 Apr; 8(2):209-20. Goldrath AW, Barber L, Chen KE, Alters SE. PMID: 7612149.
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