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Trey Ideker

Title(s)Adjunct Professor, Bioengineering
SchoolHealth Sciences
Phone858-822-4558
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    Collapse Biography 
    Collapse Awards and Honors
    Duke University Talent Identification Program2009Distinguished Alumni Award
    2009Selected as member of Faculty of 1000 (f1000.com)
    International Society for Computational Biology (ISCB)2009Overton Prize
    2006Selected by Technology Review Top 10 Innovators of 2006
    2005Selected by Technology Review Top 35 Young Innovators of 2005
    David and Lucile Packard Foundation2004 Fellowship Award

    Collapse Overview 
    Collapse Overview
    Education
    - 2001 - Ph. D. (Molecular Biotechnology), University of Washington, Seattle, WA
    - 1995 - M.E. (Electrical Engineering and Computer Science), Massachusetts Institute of Technology, Cambridge, MA
    - 1995 - B.S. (Electrical Engineering and Computer Science), Minor in Cognitive Science. Massachusetts Institute of Technology, Cambridge, MA

    Employment
    - 2010 - Pres: Professor, Medicine and Bioengineering, University of California, San Diego, CA
    - 2009 - Pres: Division Chief of Medical Genetics, University of California, San Diego, CA
    - 2006- Pres: Associate Professor of Bioengineering, University of California, San Diego, CA
    - 2006- Pres: Adjunct Professor of Computer Science, University of California, San Diego, CA
    - 2003 – 2006: Assistant Professor of Bioengineering, University of California, San Diego, CA
    - 2001 – 2003: Pfizer Fellow in Computational Biology, Whitehead Institute for Biomedical Research, MIT, Cambridge, MA
    - 1996 – 2001: Doctoral Dissertation, Leroy Hood Laboratory, Institute for Systems Biology / University of Washington Seattle, WA
    - 1999: Yeast Genetics Advanced Course, Cold Spring Harbor Laboratory Cold Spring Harbor, NY

    Collapse Research 
    Collapse Research Activities and Funding
    The Psychiatric Cell Map Initiative: Connecting Genomics, Subcellular Networks, and Higher Order Phenotypes
    NIH/NIMH U01MH115747Sep 5, 2018 - Jun 30, 2023
    Role: Co-Principal Investigator
    Research Center for Cancer Systems Biology: Cancer Cell Map Initiative
    NIH/NCI U54CA209891May 11, 2017 - Apr 30, 2022
    Role: Co-Principal Investigator
    NDEx - the Network Data Exchange A Network Commons for Biologists
    NIH/NCI U24CA184427May 1, 2014 - Apr 30, 2022
    Role: Principal Investigator
    National Resource for Network Biology (NRNB)
    NIH/NIGMS P41GM103504Sep 13, 2010 - Jun 30, 2015
    Role: Principal Investigator
    Resource for Analysis, Vizualization, and Integration of Networks (RAVIN)
    NIH/NCRR P41RR031228Sep 13, 2010 - Jun 30, 2015
    Role: Principal Investigator
    Massively parallel epigenomics: building new value with current resources
    NIH/NHGRI R21HG005252Feb 1, 2010 - Jan 31, 2013
    Role: Principal Investigator
    A Systems Approach to Mapping the DNA Damage Response
    NIH/NIEHS R01ES014811Sep 4, 2009 - Jul 31, 2010
    Role: Principal Investigator
    Comparative Analysis of Genetic Interaction Networks
    NIH/NIGMS R01GM084279Aug 1, 2008 - Jul 31, 2014
    Role: Principal Investigator
    San Diego Center for Systems Biology: From Maps to Models
    NIH/NIGMS P50GM085764Jul 1, 2008 - May 31, 2019
    Role: Principal Investigator
    Cytoscape: A Modeling Platform for Biomolecular Networks
    NIH/NHGRI R01HG009979Jun 1, 2004 - Jun 30, 2021
    Role: Principal Investigator
    Cytoscape: A Modeling Platform for Biomolecular Networks
    NIH/NIGMS R01GM070743Jun 1, 2004 - May 31, 2009
    Role: Principal Investigator
    Integrated Proteome Technologies for Pathway Mapping
    NIH P41RR018627Sep 30, 2003 - Jul 31, 2010
    Role: Co-Investigator
    Chronic HIV infection and Aging in NeuroAIDS (CHAIN) Center
    NIH P30MH062261Sep 30, 2000 - Feb 28, 2017
    Role: Co-Investigator

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