David Pride

Title(s)Professor, Pathology
SchoolVc-health Sciences-schools
Address9500 Gilman Drive #
La Jolla CA 92093
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    Collapse Research 
    Collapse Research Activities and Funding
    Developing synergistic antibiotic and phage cocktails to target bacterial pathogens
    NIH R21AI149354Feb 11, 2020 - Jan 31, 2022
    Role: Co-Principal Investigator
    Model systems to assess the role of viruses in the microbiome
    NIH R21AI133189Feb 15, 2018 - Jan 31, 2020
    Role: Principal Investigator
    Microbiome analysis of human oral bacteriophage communities
    NIH K08AI085028Aug 19, 2011 - Jul 31, 2014
    Role: Principal Investigator

    Collapse ORNG Applications 
    Collapse Clinical Trials

    Collapse Bibliographic 
    Collapse Publications
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. A simple solid media assay for detection of synergy between bacteriophages and antibiotics. Microbiol Spectr. 2024 Mar 25; e0322123. Khong E, Oh JJ, Jimenez JM, Liu R, Dunham S, Monsibais A, Rhoads A, Ghatbale P, Garcia A, Cobián Güemes AG, Blanc AN, Chiu M, Kuo P, Proost M, Kline A, Aslam S, Schooley RT, Whiteson K, Fraley SI, Pride DT. PMID: 38526142.
      View in: PubMed   Mentions:    Fields:    
    2. Universal Digital High-Resolution Melt Analysis for the Diagnosis of Bacteremia. J Mol Diagn. 2024 Feb 21. Aralar A, Goshia T, Ramchandar N, Lawrence SM, Karmakar A, Sharma A, Sinha M, Pride DT, Kuo P, Lecrone K, Chiu M, Mestan KK, Sajti E, Vanderpool M, Lazar S, Crabtree M, Tesfai Y, Fraley SI. PMID: 38395408.
      View in: PubMed   Mentions:    Fields:    
    3. Integrated Genomic and Social Network Analyses of Severe Acute Respiratory Syndrome Coronavirus 2 Transmission in the Healthcare Setting. Clin Infect Dis. 2024 Jan 16. Keehner J, Abeles SR, Longhurst CA, Horton LE, Myers FE, Riggs-Rodriguez L, Ahmad M, Baxter S, Boussina A, Cantrell K, Cardenas P, De Hoff P, El-Kareh R, Holland J, Ikeda D, Kurashige K, Laurent LC, SEARCH Alliance , Lucas A, Pride D, Sathe S, Tran AR, Vasylyeva TI, Yeo G, Knight R, Wertheim JO, Torriani FJ. PMID: 38227643.
      View in: PubMed   Mentions:    Fields:    
    4. Pangenome comparison of Bacteroides fragilis genomospecies unveil genetic diversity and ecological insights. bioRxiv. 2023 Dec 21. Oles RE, Terrazas MC, Loomis LR, Hsu CY, Tribelhorn C, Ferre PB, Ea A, Bryant M, Young J, Carrow HC, Sandborn WJ, Dulai P, Sivagnanam M, Pride D, Knight R, Chu H. PMID: 38187556; PMCID: PMC10769428.
      View in: PubMed   Mentions:
    5. Genomic surveillance reveals dynamic shifts in the connectivity of COVID-19 epidemics. Cell. 2023 12 21; 186(26):5690-5704.e20. Matteson NL, Hassler GW, Kurzban E, Schwab MA, Perkins SA, Gangavarapu K, Levy JI, Parker E, Pride D, Hakim A, De Hoff P, Cheung W, Castro-Martinez A, Rivera A, Veder A, Rivera A, Wauer C, Holmes J, Wilson J, Ngo SN, Plascencia A, Lawrence ES, Smoot EW, Eisner ER, Tsai R, Chacón M, Baer NA, Seaver P, Salido RA, Aigner S, Ngo TT, Barber T, Ostrander T, Fielding-Miller R, Simmons EH, Zazueta OE, Serafin-Higuera I, Sanchez-Alavez M, Moreno-Camacho JL, García-Gil A, Murphy Schafer AR, McDonald E, Corrigan J, Malone JD, Stous S, Shah S, Moshiri N, Weiss A, Anderson C, Aceves CM, Spencer EG, Hufbauer EC, Lee JJ, King AJ, Ramesh KS, Nguyen KN, Saucedo K, Robles-Sikisaka R, Fisch KM, Gonias SL, Birmingham A, McDonald D, Karthikeyan S, Martin NK, Schooley RT, Negrete AJ, Reyna HJ, Chavez JR, Garcia ML, Cornejo-Bravo JM, Becker D, Isaksson M, Washington NL, Lee W, Garfein RS, Luna-Ruiz Esparza MA, Alcántar-Fernández J, Henson B, Jepsen K, Olivares-Flores B, Barrera-Badillo G, Lopez-Martínez I, Ramírez-González JE, Flores-León R, Kingsmore SF, Sanders A, Pradenas A, White B, Matthews G, Hale M, McLawhon RW, Reed SL, Winbush T, McHardy IH, Fielding RA, Nicholson L, Quigley MM, Harding A, Mendoza A, Bakhtar O, Browne SH, Olivas Flores J, Rincon Rodríguez DG, Gonzalez Ibarra M, Robles Ibarra LC, Arellano Vera BJ, Gonzalez Garcia J, Harvey-Vera A, Knight R, Laurent LC, Yeo GW, Wertheim JO, Ji X, Worobey M, Suchard MA, Andersen KG, Campos-Romero A, Wohl S, Zeller M. PMID: 38101407; PMCID: PMC10795731.
      View in: PubMed   Mentions:    Fields:    Translation:HumansCellsPHPublic Health
    6. Jumbo phages are active against extensively drug-resistant eyedrop-associated Pseudomonas aeruginosa infections. Antimicrob Agents Chemother. 2023 12 14; 67(12):e0065423. Cobián Güemes AG, Ghatbale P, Blanc AN, Morgan CJ, Garcia A, Leonard J, Huang L, Kovalick G, Proost M, Chiu M, Kuo P, Oh J, Karthikeyan S, Knight R, Pogliano J, Schooley RT, Pride DT. PMID: 37931230; PMCID: PMC10720484.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansCells
    7. Validating Tools to Detect and Inactivate Monkeypox Virus in Human Milk. Breastfeed Med. 2023 10; 18(10):785-789. Clark AE, Furst A, Sejane K, Stellwagen L, Proost M, Pride D, Smith DM, Carlin AF, Bode L. PMID: 37733262; PMCID: PMC10616931.
      View in: PubMed   Mentions:    Fields:    Translation:HumansCells
    8. Universal digital high resolution melt analysis for the diagnosis of bacteremia. medRxiv. 2023 Sep 08. Aralar A, Goshia T, Ramchandar N, Lawrence SM, Karmakar A, Sharma A, Sinha M, Pride DT, Kuo P, Lecrone K, Chiu M, Mestan K, Sajti E, Vanderpool M, Lazar S, Crabtree M, Tesfai Y, Fraley SI. PMID: 37732245; PMCID: PMC10508820.
      View in: PubMed   Mentions:
    9. A simple solid media assay for detection of synergy between bacteriophages and antibiotics. bioRxiv. 2023 Aug 24. Khong E, Oh J, Jimenez JM, Liu R, Dunham S, Monsibais A, Rhoads A, Ghatbale P, Garcia A, Cobián Güemes AG, Blanc AN, Chiu M, Kuo P, Proost M, Kline A, Aslam S, Schooley RT, Whiteson K, Fraley SI, Pride DT. PMID: 37662290; PMCID: PMC10473724.
      View in: PubMed   Mentions:
    10. Common antibiotics, azithromycin and amoxicillin, affect gut metagenomics within a household. BMC Microbiol. 2023 08 02; 23(1):206. Chopyk J, Cobián Güemes AG, Ramirez-Sanchez C, Attai H, Ly M, Jones MB, Liu R, Liu C, Yang K, Tu XM, Abeles SR, Nelson K, Pride DT. PMID: 37528343; PMCID: PMC10394940.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    11. CORE: A Global Aggregation Service for Open Access Papers. Sci Data. 2023 06 07; 10(1):366. Knoth P, Herrmannova D, Cancellieri M, Anastasiou L, Pontika N, Pearce S, Gyawali B, Pride D. PMID: 37286585; PMCID: PMC10247729.
      View in: PubMed   Mentions:    Fields:    
    12. Characterization of SARS-CoV-2 Distribution and Microbial Succession in a Clinical Microbiology Testing Facility during the SARS-CoV-2 Pandemic. Microbiol Spectr. 2023 Mar 14; e0450922. Sah GP, Kovalick G, Chopyk J, Kuo P, Huang L, Ghatbale P, Das P, Realegeno S, Knight R, Gilbert JA, Pride DT. PMID: 36916973; PMCID: PMC10100919.
      View in: PubMed   Mentions:    Fields:    
    13. Fecal virome transplantation is sufficient to alter fecal microbiota and drive lean and obese body phenotypes in mice. bioRxiv. 2023 Feb 04. Borin JM, Liu R, Wang Y, Wu TC, Chopyk J, Huang L, Kuo P, Ghose C, Meyer JR, Tu XM, Schnabl B, Pride DT. PMID: 36778328; PMCID: PMC9915734.
      View in: PubMed   Mentions:
    14. Fecal virome transplantation is sufficient to alter fecal microbiota and drive lean and obese body phenotypes in mice. Gut Microbes. 2023 Jan-Dec; 15(1):2236750. Borin JM, Liu R, Wang Y, Wu TC, Chopyk J, Huang L, Kuo P, Ghose C, Meyer JR, Tu XM, Schnabl B, Pride DT. PMID: 37475473; PMCID: PMC10364654.
      View in: PubMed   Mentions: 4     Fields:    Translation:AnimalsCells
    15. Safety and microbiological activity of phage therapy in persons with cystic fibrosis colonized with Pseudomonas aeruginosa: study protocol for a phase 1b/2, multicenter, randomized, double-blind, placebo-controlled trial. Trials. 2022 Dec 28; 23(1):1057. Tamma PD, Souli M, Billard M, Campbell J, Conrad D, Ellison DW, Evans B, Evans SR, Greenwood-Quaintance KE, Filippov AA, Geres HS, Hamasaki T, Komarow L, Nikolich MP, Lodise TP, Nayak SU, Norice-Tra C, Patel R, Pride D, Russell J, Van Tyne D, Chambers HF, FowlerJr VG, Schooley RT, Antibacterial Resistance Leadership Group. PMID: 36578069; PMCID: PMC9795609.
      View in: PubMed   Mentions: 11     Fields:    Translation:HumansCellsCTClinical Trials
    16. Multicenter Evaluation of the Cepheid Xpert GBS LB XC Test. J Clin Microbiol. 2022 Dec 06; e0135622. Thwe PM, Faron ML, Pride DT, Cruz A, Gerstbrein D, Nahmod KA, Bigham L, Du X, Lu X, Moya S, Ren P. PMID: 36472424.
      View in: PubMed   Mentions: 2     Fields:    
    17. Isolation of a Peptide That Binds to Pseudomonas aeruginosa Lytic Bacteriophage. ACS Omega. 2022 Oct 25; 7(42):38053-38060. Chan SK, Zhao Z, Penziner S, Khong E, Pride D, Schooley RT, Steinmetz NF. PMID: 36312416; PMCID: PMC9609082.
      View in: PubMed   Mentions: 1  
    18. Comparison of the APAS Independence Automated Plate Reader System with the Manual Standard of Care for Processing Urine Culture Specimens. Microbiol Spectr. 2022 Oct 26; 10(5):e0144222. Chiu M, Kuo P, Lecrone K, Garcia A, Chen R, Quach NE, Tu XM, Pride DT. PMID: 35972280; PMCID: PMC9603219.
      View in: PubMed   Mentions: 1     Fields:    
    19. Analysis of the FAST™ system for expedited identification and antimicrobial susceptibility testing of bloodborne pathogens. Diagn Microbiol Infect Dis. 2022 Dec; 104(4):115783. Kuo P, LeCrone K, Chiu M, Realegeno S, Pride DT. PMID: 36031475.
      View in: PubMed   Mentions: 3     Fields:    Translation:HumansCells
    20. Wastewater sequencing reveals early cryptic SARS-CoV-2 variant transmission. Nature. 2022 09; 609(7925):101-108. Karthikeyan S, Levy JI, De Hoff P, Humphrey G, Birmingham A, Jepsen K, Farmer S, Tubb HM, Valles T, Tribelhorn CE, Tsai R, Aigner S, Sathe S, Moshiri N, Henson B, Mark AM, Hakim A, Baer NA, Barber T, Belda-Ferre P, Chacón M, Cheung W, Cresini ES, Eisner ER, Lastrella AL, Lawrence ES, Marotz CA, Ngo TT, Ostrander T, Plascencia A, Salido RA, Seaver P, Smoot EW, McDonald D, Neuhard RM, Scioscia AL, Satterlund AM, Simmons EH, Abelman DB, Brenner D, Bruner JC, Buckley A, Ellison M, Gattas J, Gonias SL, Hale M, Hawkins F, Ikeda L, Jhaveri H, Johnson T, Kellen V, Kremer B, Matthews G, McLawhon RW, Ouillet P, Park D, Pradenas A, Reed S, Riggs L, Sanders A, Sollenberger B, Song A, White B, Winbush T, Aceves CM, Anderson C, Gangavarapu K, Hufbauer E, Kurzban E, Lee J, Matteson NL, Parker E, Perkins SA, Ramesh KS, Robles-Sikisaka R, Schwab MA, Spencer E, Wohl S, Nicholson L, McHardy IH, Dimmock DP, Hobbs CA, Bakhtar O, Harding A, Mendoza A, Bolze A, Becker D, Cirulli ET, Isaksson M, Schiabor Barrett KM, Washington NL, Malone JD, Schafer AM, Gurfield N, Stous S, Fielding-Miller R, Garfein RS, Gaines T, Anderson C, Martin NK, Schooley R, Austin B, MacCannell DR, Kingsmore SF, Lee W, Shah S, McDonald E, Yu AT, Zeller M, Fisch KM, Longhurst C, Maysent P, Pride D, Khosla PK, Laurent LC, Yeo GW, Andersen KG, Knight R. PMID: 35798029; PMCID: PMC9433318.
      View in: PubMed   Mentions: 105     Fields:    Translation:HumansCellsPHPublic Health
    21. Increased Innate Immune Susceptibility in Hyperpigmented Bacteriophage-Resistant Mutants of Pseudomonas aeruginosa. Antimicrob Agents Chemother. 2022 08 16; 66(8):e0023922. Menon ND, Penziner S, Montaño ET, Zurich R, Pride DT, Nair BG, Kumar GB, Nizet V. PMID: 35862755; PMCID: PMC9380547.
      View in: PubMed   Mentions: 4     Fields:    Translation:HumansAnimalsCells
    22. Phage Cocktails Constrain the Growth of Enterococcus. mSystems. 2022 Aug 30; 7(4):e0001922. Wandro S, Ghatbale P, Attai H, Hendrickson C, Samillano C, Suh J, Dunham SJB, Pride DT, Whiteson K. PMID: 35762793; PMCID: PMC9426582.
      View in: PubMed   Mentions: 7     Fields:    
    23. Antimicrobial-Resistant Shigella spp. in San Diego, California, USA, 2017-2020. Emerg Infect Dis. 2022 06; 28(6):1110-1116. Gaufin T, Blumenthal J, Ramirez-Sanchez C, Mehta S, Pride DT, Fierer J, Jenks JD. PMID: 35608550; PMCID: PMC9155871.
      View in: PubMed   Mentions: 7     Fields:    Translation:HumansCells
    24. Bacteriophage-Mediated Perturbation of Defined Bacterial Communities in an In Vitro Model of the Human Gut. Microbiol Spectr. 2022 06 29; 10(3):e0113522. Attai H, Wilde J, Liu R, Chopyk J, Garcia AG, Allen-Vercoe E, Pride D. PMID: 35638779; PMCID: PMC9241613.
      View in: PubMed   Mentions: 5     Fields:    Translation:HumansAnimalsCells
    25. Wastewater sequencing uncovers early, cryptic SARS-CoV-2 variant transmission. medRxiv. 2022 Apr 04. Karthikeyan S, Levy JI, De Hoff P, Humphrey G, Birmingham A, Jepsen K, Farmer S, Tubb HM, Valles T, Tribelhorn CE, Tsai R, Aigner S, Sathe S, Moshiri N, Henson B, Mark AM, Hakim A, Baer NA, Barber T, Belda-Ferre P, Chacón M, Cheung W, Cresini ES, Eisner ER, Lastrella AL, Lawrence ES, Marotz CA, Ngo TT, Ostrander T, Plascencia A, Salido RA, Seaver P, Smoot EW, McDonald D, Neuhard RM, Scioscia AL, Satterlund AM, Simmons EH, Abelman DB, Brenner D, Bruner JC, Buckley A, Ellison M, Gattas J, Gonias SL, Hale M, Hawkins F, Ikeda L, Jhaveri H, Johnson T, Kellen V, Kremer B, Matthews G, McLawhon RW, Ouillet P, Park D, Pradenas A, Reed S, Riggs L, Sanders A, Sollenberger B, Song A, White B, Winbush T, Aceves CM, Anderson C, Gangavarapu K, Hufbauer E, Kurzban E, Lee J, Matteson NL, Parker E, Perkins SA, Ramesh KS, Robles-Sikisaka R, Schwab MA, Spencer E, Wohl S, Nicholson L, Mchardy IH, Dimmock DP, Hobbs CA, Bakhtar O, Harding A, Mendoza A, Bolze A, Becker D, Cirulli ET, Isaksson M, Barrett KMS, Washington NL, Malone JD, Schafer AM, Gurfield N, Stous S, Fielding-Miller R, Garfein RS, Gaines T, Anderson C, Martin NK, Schooley R, Austin B, MacCannell DR, Kingsmore SF, Lee W, Shah S, McDonald E, Yu AT, Zeller M, Fisch KM, Longhurst C, Maysent P, Pride D, Khosla PK, Laurent LC, Yeo GW, Andersen KG, Knight R. PMID: 35411350; PMCID: PMC8996633.
      View in: PubMed   Mentions:
    26. Intestinal virome in patients with alcohol use disorder and after abstinence. Hepatol Commun. 2022 08; 6(8):2058-2069. Hsu CL, Zhang X, Jiang L, Lang S, Hartmann P, Pride D, Fouts DE, Stärkel P, Schnabl B. PMID: 35368152; PMCID: PMC9315129.
      View in: PubMed   Mentions: 9     Fields:    Translation:HumansCells
    27. Considerations for the Use of Phage Therapy in Clinical Practice. Antimicrob Agents Chemother. 2022 03 15; 66(3):e0207121. Suh GA, Lodise TP, Tamma PD, Knisely JM, Alexander J, Aslam S, Barton KD, Bizzell E, Totten KMC, Campbell JL, Chan BK, Cunningham SA, Goodman KE, Greenwood-Quaintance KE, Harris AD, Hesse S, Maresso A, Nussenblatt V, Pride D, Rybak MJ, Sund Z, van Duin D, Van Tyne D, Patel R, Antibacterial Resistance Leadership Group. PMID: 35041506; PMCID: PMC8923208.
      View in: PubMed   Mentions: 95     Fields:    Translation:HumansCells
    28. Impact of Vaginal Estrogen on the Urobiome in Postmenopausal Women With Recurrent Urinary Tract Infection. Female Pelvic Med Reconstr Surg. 2022 01 01; 28(1):20-26. Jung CE, Estaki M, Chopyk J, Taylor BC, Gonzalez A, McDonald D, Shin J, Ferrante K, Wasenda E, Lippmann Q, Knight R, Pride D, Lukacz ES. PMID: 33978602.
      View in: PubMed   Mentions: 3     Fields:    Translation:Humans
    29. Resurgence of SARS-CoV-2 Infection in a Highly Vaccinated Health System Workforce. N Engl J Med. 2021 09 30; 385(14):1330-1332. Keehner J, Horton LE, Binkin NJ, Laurent LC, SEARCH Alliance, Pride D, Longhurst CA, Abeles SR, Torriani FJ. PMID: 34469645; PMCID: PMC8451183.
      View in: PubMed   Mentions: 88     Fields:    Translation:HumansCellsPHPublic Health
    30. Molecular Mirror Technology Facilitates High-Throughput, Accurate SARS-CoV-2 Testing. Microbiol Spectr. 2021 09 03; 9(1):e0039221. Realegeno S, Hash S, Wong C, Liu R, Shepherd J, Schooley RT, Lipson DA, Fung F, Menon S, Pride DT. PMID: 34431687; PMCID: PMC8552600.
      View in: PubMed   Mentions:    Fields:    Translation:HumansCellsPHPublic Health
    31. Forming Consensus To Advance Urobiome Research. mSystems. 2021 Aug 31; 6(4):e0137120. Brubaker L, Gourdine JF, Siddiqui NY, Holland A, Halverson T, Limeria R, Pride D, Ackerman L, Forster CS, Jacobs KM, Thomas-White KJ, Putonti C, Dong Q, Weinstein M, Lukacz ES, Karstens L, Wolfe AJ. PMID: 34282932; PMCID: PMC8409733.
      View in: PubMed   Mentions: 22     Fields:    
    32. Compositional Differences in the Oral Microbiome of E-cigarette Users. Front Microbiol. 2021; 12:599664. Chopyk J, Bojanowski CM, Shin J, Moshensky A, Fuentes AL, Bonde SS, Chuki D, Pride DT, Crotty Alexander LE. PMID: 34135868; PMCID: PMC8200533.
      View in: PubMed   Mentions: 14  
    33. Comparison of two nucleic acid amplification tests (NAATs) and two antigen tests for detection of SARS-CoV-2 from upper respiratory specimens. J Clin Virol Plus. 2021 Jun; 1(1):100011. Kuo P, Realegeno S, Pride DT. PMID: 35261999; PMCID: PMC8019354.
      View in: PubMed   Mentions: 6  
    34. Targeting Biofilm of MDR Providencia stuartii by Phages Using a Catheter Model. Antibiotics (Basel). 2021 Apr 02; 10(4). Rakov C, Ben Porat S, Alkalay-Oren S, Yerushalmy O, Abdalrhman M, Gronovich N, Huang L, Pride D, Coppenhagen-Glazer S, Nir-Paz R, Hazan R. PMID: 33918377; PMCID: PMC8065852.
      View in: PubMed   Mentions: 12  
    35. Animal Models of Phage Therapy. Front Microbiol. 2021; 12:631794. Penziner S, Schooley RT, Pride DT. PMID: 33584632; PMCID: PMC7876411.
      View in: PubMed   Mentions: 8  
    36. Intestinal Virome in Patients With Alcoholic Hepatitis. Hepatology. 2020 12; 72(6):2182-2196. Jiang L, Lang S, Duan Y, Zhang X, Gao B, Chopyk J, Schwanemann LK, Ventura-Cots M, Bataller R, Bosques-Padilla F, Verna EC, Abraldes JG, Brown RS, Vargas V, Altamirano J, Caballería J, Shawcross DL, Ho SB, Louvet A, Lucey MR, Mathurin P, Garcia-Tsao G, Kisseleva T, Brenner DA, Tu XM, Stärkel P, Pride D, Fouts DE, Schnabl B. PMID: 32654263; PMCID: PMC8159727.
      View in: PubMed   Mentions: 48     Fields:    Translation:HumansAnimalsCells
    37. Cervicovaginal Microbiome Composition Is Associated with Metabolic Profiles in Healthy Pregnancy. mBio. 2020 08 25; 11(4). Oliver A, LaMere B, Weihe C, Wandro S, Lindsay KL, Wadhwa PD, Mills DA, Pride DT, Fiehn O, Northen T, de Raad M, Li H, Martiny JBH, Lynch S, Whiteson K. PMID: 32843557; PMCID: PMC7448280.
      View in: PubMed   Mentions: 19     Fields:    Translation:Humans
    38. Intestinal Virome Signature Associated With Severity of Nonalcoholic Fatty Liver Disease. Gastroenterology. 2020 11; 159(5):1839-1852. Lang S, Demir M, Martin A, Jiang L, Zhang X, Duan Y, Gao B, Wisplinghoff H, Kasper P, Roderburg C, Tacke F, Steffen HM, Goeser T, Abraldes JG, Tu XM, Loomba R, Stärkel P, Pride D, Fouts DE, Schnabl B. PMID: 32652145; PMCID: PMC8404510.
      View in: PubMed   Mentions: 60     Fields:    Translation:Humans
    39. Temporal variations in bacterial community diversity and composition throughout intensive care unit renovations. Microbiome. 2020 06 08; 8(1):86. Chopyk J, Akrami K, Bavly T, Shin JH, Schwanemann LK, Ly M, Kalia R, Xu Y, Kelley ST, Malhotra A, Torriani FJ, Sweeney DA, Pride DT. PMID: 32513256; PMCID: PMC7278141.
      View in: PubMed   Mentions: 6     Fields:    Translation:CellsPHPublic Health
    40. Fecal Viral Community Responses to High-Fat Diet in Mice. mSphere. 2020 02 26; 5(1). Schulfer A, Santiago-Rodriguez TM, Ly M, Borin JM, Chopyk J, Blaser MJ, Pride DT. PMID: 32102942; PMCID: PMC7045389.
      View in: PubMed   Mentions: 24     Fields:    Translation:AnimalsCells
    41. Aseptic Barriers Allow a Clean Contact for Contaminated Stethoscope Diaphragms. Mayo Clin Proc Innov Qual Outcomes. 2020 Feb; 4(1):21-30. Vasudevan R, Shin JH, Chopyk J, Peacock WF, Torriani FJ, Maisel AS, Pride DT. PMID: 32055768; PMCID: PMC7010972.
      View in: PubMed   Mentions: 6  
    42. Bacteriophage targeting of gut bacterium attenuates alcoholic liver disease. Nature. 2019 11; 575(7783):505-511. Duan Y, Llorente C, Lang S, Brandl K, Chu H, Jiang L, White RC, Clarke TH, Nguyen K, Torralba M, Shao Y, Liu J, Hernandez-Morales A, Lessor L, Rahman IR, Miyamoto Y, Ly M, Gao B, Sun W, Kiesel R, Hutmacher F, Lee S, Ventura-Cots M, Bosques-Padilla F, Verna EC, Abraldes JG, Brown RS, Vargas V, Altamirano J, Caballería J, Shawcross DL, Ho SB, Louvet A, Lucey MR, Mathurin P, Garcia-Tsao G, Bataller R, Tu XM, Eckmann L, van der Donk WA, Young R, Lawley TD, Stärkel P, Pride D, Fouts DE, Schnabl B. PMID: 31723265; PMCID: PMC6872939.
      View in: PubMed   Mentions: 290     Fields:    Translation:HumansAnimalsCells
    43. Benchmarking urine storage and collection conditions for evaluating the female urinary microbiome. Sci Rep. 2019 09 16; 9(1):13409. Jung CE, Chopyk J, Shin JH, Lukacz ES, Brubaker L, Schwanemann LK, Knight R, Wolfe AJ, Pride DT. PMID: 31527753; PMCID: PMC6746804.
      View in: PubMed   Mentions: 21     Fields:    Translation:HumansCells
    44. The Virome of Cerebrospinal Fluid: Viruses Where We Once Thought There Were None. Front Microbiol. 2019; 10:2061. Ghose C, Ly M, Schwanemann LK, Shin JH, Atab K, Barr JJ, Little M, Schooley RT, Chopyk J, Pride DT. PMID: 31555247; PMCID: PMC6742758.
      View in: PubMed   Mentions: 27  
    45. Comparison of Three Nucleic Acid Amplification Tests and Culture for Detection of Group B Streptococcus from Enrichment Broth. J Clin Microbiol. 2019 06; 57(6). Shin JH, Pride DT. PMID: 30944190; PMCID: PMC6535594.
      View in: PubMed   Mentions: 12     Fields:    Translation:HumansCells
    46. A Rapid and Low-Cost Pathogen Detection Platform by Using a Molecular Agglutination Assay. ACS Cent Sci. 2018 Nov 28; 4(11):1485-1494. Wu TF, Chen YC, Wang WC, Fang YC, Fukuoka S, Pride DT, Pak OS. PMID: 30555900; PMCID: PMC6276042.
      View in: PubMed   Mentions: 3  
    47. Comparison of Multiplex Gastrointestinal Pathogen Panel and Conventional Stool Testing for Evaluation of Diarrhea in Patients with Inflammatory Bowel Diseases. Dig Dis Sci. 2019 02; 64(2):382-390. Ahmad W, Nguyen NH, Boland BS, Dulai PS, Pride DT, Bouland D, Sandborn WJ, Singh S. PMID: 30361807; PMCID: PMC6358459.
      View in: PubMed   Mentions: 10     Fields:    Translation:HumansCells
    48. Shared and Distinct Features of Human Milk and Infant Stool Viromes. Front Microbiol. 2018; 9:1162. Pannaraj PS, Ly M, Cerini C, Saavedra M, Aldrovandi GM, Saboory AA, Johnson KM, Pride DT. PMID: 29910789; PMCID: PMC5992295.
      View in: PubMed   Mentions: 54  
    49. Draft Genome Sequence of an Enterococcus faecalis ATCC 19433 Siphovirus Isolated from Raw Domestic Sewage. Genome Announc. 2017 Jan 19; 5(3). Santiago-Rodriguez TM, Ly M, Pride DT, Toranzos GA. PMID: 28104647; PMCID: PMC5255928.
      View in: PubMed   Mentions: 1  
    50. Transmission of viruses via our microbiomes. Microbiome. 2016 Dec 02; 4(1):64. Ly M, Jones MB, Abeles SR, Santiago-Rodriguez TM, Gao J, Chan IC, Ghose C, Pride DT. PMID: 27912785; PMCID: PMC5134127.
      View in: PubMed   Mentions: 31     Fields:    Translation:HumansCells
    51. Microbial diversity in individuals and their household contacts following typical antibiotic courses. Microbiome. 2016 07 30; 4(1):39. Abeles SR, Jones MB, Santiago-Rodriguez TM, Ly M, Klitgord N, Yooseph S, Nelson KE, Pride DT. PMID: 27473422; PMCID: PMC4967329.
      View in: PubMed   Mentions: 75     Fields:    Translation:HumansCells
    52. Immunogenicity and protective efficacy of recombinant Clostridium difficile flagellar protein FliC. Emerg Microbes Infect. 2016 Feb 03; 5:e8. Ghose C, Eugenis I, Sun X, Edwards AN, McBride SM, Pride DT, Kelly CP, Ho DD. PMID: 26839147; PMCID: PMC4777929.
      View in: PubMed   Mentions: 28     Fields:    Translation:HumansAnimalsCellsPHPublic Health
    53. Electronic cigarette inhalation alters innate immunity and airway cytokines while increasing the virulence of colonizing bacteria. J Mol Med (Berl). 2016 06; 94(6):667-79. Hwang JH, Lyes M, Sladewski K, Enany S, McEachern E, Mathew DP, Das S, Moshensky A, Bapat S, Pride DT, Ongkeko WM, Crotty Alexander LE. PMID: 26804311.
      View in: PubMed   Mentions: 122     Fields:    Translation:HumansAnimalsCells
    54. Chemostat culture systems support diverse bacteriophage communities from human feces. Microbiome. 2015 Nov 09; 3:58. Santiago-Rodriguez TM, Ly M, Daigneault MC, Brown IH, McDonald JA, Bonilla N, Vercoe EA, Pride DT. PMID: 26549756; PMCID: PMC4638026.
      View in: PubMed   Mentions: 15     Fields:    Translation:HumansCells
    55. Library preparation methodology can influence genomic and functional predictions in human microbiome research. Proc Natl Acad Sci U S A. 2015 Nov 10; 112(45):14024-9. Jones MB, Highlander SK, Anderson EL, Li W, Dayrit M, Klitgord N, Fabani MM, Seguritan V, Green J, Pride DT, Yooseph S, Biggs W, Nelson KE, Venter JC. PMID: 26512100; PMCID: PMC4653211.
      View in: PubMed   Mentions: 96     Fields:    Translation:HumansCells
    56. Effects of Long Term Antibiotic Therapy on Human Oral and Fecal Viromes. PLoS One. 2015; 10(8):e0134941. Abeles SR, Ly M, Santiago-Rodriguez TM, Pride DT. PMID: 26309137; PMCID: PMC4550281.
      View in: PubMed   Mentions: 58     Fields:    Translation:HumansCells
    57. Transcriptome analysis of bacteriophage communities in periodontal health and disease. BMC Genomics. 2015 Jul 28; 16:549. Santiago-Rodriguez TM, Naidu M, Abeles SR, Boehm TK, Ly M, Pride DT. PMID: 26215258; PMCID: PMC4515923.
      View in: PubMed   Mentions: 29     Fields:    Translation:HumansCells
    58. Global transcription of CRISPR loci in the human oral cavity. BMC Genomics. 2015 May 21; 16:401. Lum AG, Ly M, Santiago-Rodriguez TM, Naidu M, Boehm TK, Pride DT. PMID: 25994215; PMCID: PMC4438527.
      View in: PubMed   Mentions: 6     Fields:    Translation:HumansCells
    59. Bacteriophage and their potential roles in the human oral cavity. J Oral Microbiol. 2015; 7:27423. Edlund A, Santiago-Rodriguez TM, Boehm TK, Pride DT. PMID: 25861745; PMCID: PMC4393417.
      View in: PubMed   Mentions: 48  
    60. Identification of staphylococcal phage with reduced transcription in human blood through transcriptome sequencing. Front Microbiol. 2015; 6:216. Santiago-Rodriguez TM, Naidu M, Jones MB, Ly M, Pride DT. PMID: 26074882; PMCID: PMC4447126.
      View in: PubMed   Mentions: 4  
    61. The human urine virome in association with urinary tract infections. Front Microbiol. 2015; 6:14. Santiago-Rodriguez TM, Ly M, Bonilla N, Pride DT. PMID: 25667584; PMCID: PMC4304238.
      View in: PubMed   Mentions: 78  
    62. Molecular bases and role of viruses in the human microbiome. J Mol Biol. 2014 Nov 25; 426(23):3892-906. Abeles SR, Pride DT. PMID: 25020228; PMCID: PMC7172398.
      View in: PubMed   Mentions: 56     Fields:    Translation:HumansCells
    63. Characterization of bacteriophage communities and CRISPR profiles from dental plaque. BMC Microbiol. 2014 Jun 30; 14:175. Naidu M, Robles-Sikisaka R, Abeles SR, Boehm TK, Pride DT. PMID: 24981669; PMCID: PMC4104742.
      View in: PubMed   Mentions: 28     Fields:    Translation:HumansCells
    64. Conservation of streptococcal CRISPRs on human skin and saliva. BMC Microbiol. 2014 Jun 06; 14:146. Robles-Sikisaka R, Naidu M, Ly M, Salzman J, Abeles SR, Boehm TK, Pride DT. PMID: 24903519; PMCID: PMC4063239.
      View in: PubMed   Mentions: 11     Fields:    Translation:HumansCells
    65. Altered oral viral ecology in association with periodontal disease. mBio. 2014 May 20; 5(3):e01133-14. Ly M, Abeles SR, Boehm TK, Robles-Sikisaka R, Naidu M, Santiago-Rodriguez T, Pride DT. PMID: 24846382; PMCID: PMC4030452.
      View in: PubMed   Mentions: 88     Fields:    Translation:HumansCells
    66. Human oral viruses are personal, persistent and gender-consistent. ISME J. 2014 Sep; 8(9):1753-67. Abeles SR, Robles-Sikisaka R, Ly M, Lum AG, Salzman J, Boehm TK, Pride DT. PMID: 24646696; PMCID: PMC4139723.
      View in: PubMed   Mentions: 73     Fields:    Translation:HumansCells
    67. Association between living environment and human oral viral ecology. ISME J. 2013 Sep; 7(9):1710-24. Robles-Sikisaka R, Ly M, Boehm T, Naidu M, Salzman J, Pride DT. PMID: 23598790; PMCID: PMC3749502.
      View in: PubMed   Mentions: 52     Fields:    Translation:HumansCellsPHPublic Health
    68. Comparisons of clustered regularly interspaced short palindromic repeats and viromes in human saliva reveal bacterial adaptations to salivary viruses. Environ Microbiol. 2012 Sep; 14(9):2564-76. Pride DT, Salzman J, Relman DA. PMID: 22583485; PMCID: PMC3424356.
      View in: PubMed   Mentions: 35     Fields:    Translation:HumansCells
    69. Evidence of a robust resident bacteriophage population revealed through analysis of the human salivary virome. ISME J. 2012 May; 6(5):915-26. Pride DT, Salzman J, Haynes M, Rohwer F, Davis-Long C, White RA, Loomer P, Armitage GC, Relman DA. PMID: 22158393; PMCID: PMC3329113.
      View in: PubMed   Mentions: 151     Fields:    Translation:HumansCells
    70. Analysis of streptococcal CRISPRs from human saliva reveals substantial sequence diversity within and between subjects over time. Genome Res. 2011 Jan; 21(1):126-36. Pride DT, Sun CL, Salzman J, Rao N, Loomer P, Armitage GC, Banfield JF, Relman DA. PMID: 21149389; PMCID: PMC3012920.
      View in: PubMed   Mentions: 62     Fields:    Translation:HumansCells
    71. Metagenomic detection of phage-encoded platelet-binding factors in the human oral cavity. Proc Natl Acad Sci U S A. 2011 Mar 15; 108 Suppl 1:4547-53. Willner D, Furlan M, Schmieder R, Grasis JA, Pride DT, Relman DA, Angly FE, McDole T, Mariella RP, Rohwer F, Haynes M. PMID: 20547834; PMCID: PMC3063595.
      View in: PubMed   Mentions: 77     Fields:    Translation:HumansCells
    72. Genome signature analysis of thermal virus metagenomes reveals Archaea and thermophilic signatures. BMC Genomics. 2008 Sep 17; 9:420. Pride DT, Schoenfeld T. PMID: 18798991; PMCID: PMC2556352.
      View in: PubMed   Mentions: 10     Fields:    Translation:Cells
    73. Superoxide dismutase A antigens derived from molecular analysis of sarcoidosis granulomas elicit systemic Th-1 immune responses. Respir Res. 2008 Apr 25; 9:36. Allen SS, Evans W, Carlisle J, Hajizadeh R, Nadaf M, Shepherd BE, Pride DT, Johnson JE, Drake WP. PMID: 18439270; PMCID: PMC2383887.
      View in: PubMed   Mentions: 18     Fields:    Translation:HumansCells
    74. Evidence of host-virus co-evolution in tetranucleotide usage patterns of bacteriophages and eukaryotic viruses. BMC Genomics. 2006 Jan 18; 7:8. Pride DT, Wassenaar TM, Ghose C, Blaser MJ. PMID: 16417644; PMCID: PMC1360066.
      View in: PubMed   Mentions: 65     Fields:    Translation:HumansAnimalsCells
    75. Bacterial biota in reflux esophagitis and Barrett's esophagus. World J Gastroenterol. 2005 Dec 14; 11(46):7277-83. Pei Z, Yang L, Peek RM, Jr Levine SM, Pride DT, Blaser MJ. PMID: 16437628; PMCID: PMC3025696.
      View in: PubMed   Mentions: 53     Fields:    Translation:HumansCells
    76. Evolutionary implications of microbial genome tetranucleotide frequency biases. Genome Res. 2003 Feb; 13(2):145-58. Pride DT, Meinersmann RJ, Wassenaar TM, Blaser MJ. PMID: 12566393; PMCID: PMC420360.
      View in: PubMed   Mentions: 119     Fields:    Translation:Cells
    77. East Asian genotypes of Helicobacter pylori strains in Amerindians provide evidence for its ancient human carriage. Proc Natl Acad Sci U S A. 2002 Nov 12; 99(23):15107-11. Ghose C, Perez-Perez GI, Dominguez-Bello MG, Pride DT, Bravi CM, Blaser MJ. PMID: 12417749; PMCID: PMC137551.
      View in: PubMed   Mentions: 46     Fields:    Translation:HumansCells
    78. Concerted evolution between duplicated genetic elements in Helicobacter pylori. J Mol Biol. 2002 Feb 22; 316(3):629-42. Pride DT, Blaser MJ. PMID: 11866522.
      View in: PubMed   Mentions: 48     Fields:    Translation:Cells
    79. Polymorphisms of Helicobacter pylori HP0638 reflect geographic origin and correlate with cagA status. J Clin Microbiol. 2002 Jan; 40(1):239-46. Ando T, Peek RM, Pride D, Levine SM, Takata T, Lee YC, Kusugami K, van der Ende A, Kuipers EJ, Kusters JG, Blaser MJ. PMID: 11773122; PMCID: PMC120108.
      View in: PubMed   Mentions: 36     Fields:    Translation:HumansCells
    80. Allelic Variation within Helicobacter pylori babA and babB. Infect Immun. 2001 Feb; 69(2):1160-71. Pride DT, Meinersmann RJ, Blaser MJ. PMID: 11160014; PMCID: PMC97998.
      View in: PubMed   Mentions: 68     Fields:    Translation:Cells
    81. Case of Pneumonia with Violent Cerebral Symptoms. Glasgow Med J. 1872 May; 4(3):404-406. Pride D. PMID: 30432900; PMCID: PMC5879406.
      View in: PubMed   Mentions:
    82. Notes on the Treatment of Sciatica. Glasgow Med J. 1872 May; 4(3):378-379. Pride D. PMID: 30432910; PMCID: PMC5879421.
      View in: PubMed   Mentions:
    83. Notes of a Scarlet Fever Epidemic. Glasgow Med J. 1869 Aug; 1(4):440-453. Pride D. PMID: 30432668; PMCID: PMC5871503.
      View in: PubMed   Mentions:
    84. Remarks on Alcohol. Glasgow Med J. 1866 Dec; 1(8):305-312. Pride D. PMID: 30432604; PMCID: PMC5867792.
      View in: PubMed   Mentions:
    85. On Four Cases of Syphilis, with Remarks. Glasgow Med J. 1865 Oct; 13(51):316-319. Pride D. PMID: 30432459; PMCID: PMC5799575.
      View in: PubMed   Mentions:
    86. Case of Aortic Aneurism with a Spontaneously Curative Tendency, &c., with Remarks. Glasgow Med J. 1865 Apr; 13(49):65-70. Pride D. PMID: 30432414; PMCID: PMC5799446.
      View in: PubMed   Mentions:
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