Loading...
Sign in to edit your profile (add interests, mentoring, photo, etc.)

    David Pride

    TitleAssociate Professor
    SchoolUniversity of California, San Diego
    DepartmentPathology
    Address9500 Gilman Drive #0612
    CA La Jolla 92093
    Phone858-822-4031
    vCardDownload vCard

      Collapse Research 
      Collapse Research Activities and Funding
      Microbiome analysis of human oral bacteriophage communities
      NIH/NIAID K08AI085028Aug 19, 2011 - Jul 31, 2014
      Role: Principal Investigator

      Collapse Bibliographic 
      Collapse Publications
      Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help.
      List All   |   Timeline
      1. Santiago-Rodriguez TM, Ly M, Pride D, Toranzos GA. Draft Genome Sequence of an Enterococcus faecalis ATCC 19433 Siphovirus Isolated from Raw Domestic Sewage. Genome Announc. 2017 Jan 19; 5(3). PMID: 28104647.
        View in: PubMed
      2. Ly M, Jones MB, Abeles SR, Santiago-Rodriguez TM, Gao J, Chan IC, Ghose C, Pride D. Transmission of viruses via our microbiomes. Microbiome. 2016 Dec 02; 4(1):64. PMID: 27912785.
        View in: PubMed
      3. Ghose C, Eugenis I, Sun X, Edwards AN, McBride SM, Pride D, Kelly CP, Ho DD. Immunogenicity and protective efficacy of recombinant Clostridium difficile flagellar protein FliC. Emerg Microbes Infect. 2016; 5:e8. PMID: 26839147.
        View in: PubMed
      4. Hwang JH, Lyes M, Sladewski K, Enany S, McEachern E, Mathew DP, Das S, Moshensky A, Bapat S, Pride D, Ongkeko WM, Crotty Alexander LE. Electronic cigarette inhalation alters innate immunity and airway cytokines while increasing the virulence of colonizing bacteria. J Mol Med (Berl). 2016 Jun; 94(6):667-79. PMID: 26804311.
        View in: PubMed
      5. Santiago-Rodriguez TM, Ly M, Daigneault MC, Brown IH, McDonald JA, Bonilla N, Vercoe EA, Pride D. Chemostat culture systems support diverse bacteriophage communities from human feces. Microbiome. 2015; 3(1):58. PMID: 26549756.
        View in: PubMed
      6. Jones MB, Highlander SK, Anderson EL, Li W, Dayrit M, Klitgord N, Fabani MM, Seguritan V, Green J, Pride D, Yooseph S, Biggs W, Nelson KE, Venter JC. Library preparation methodology can influence genomic and functional predictions in human microbiome research. Proc Natl Acad Sci U S A. 2015 Nov 10; 112(45):14024-9. PMID: 26512100.
        View in: PubMed
      7. Abeles SR, Ly M, Santiago-Rodriguez TM, Pride D. Effects of Long Term Antibiotic Therapy on Human Oral and Fecal Viromes. PLoS One. 2015; 10(8):e0134941. PMID: 26309137.
        View in: PubMed
      8. Santiago-Rodriguez TM, Naidu M, Abeles SR, Boehm TK, Ly M, Pride D. Transcriptome analysis of bacteriophage communities in periodontal health and disease. BMC Genomics. 2015; 16(1):549. PMID: 26215258.
        View in: PubMed
      9. Lum AG, Ly M, Santiago-Rodriguez TM, Naidu M, Boehm TK, Pride D. Global transcription of CRISPR loci in the human oral cavity. BMC Genomics. 2015; 16:401. PMID: 25994215.
        View in: PubMed
      10. Edlund A, Santiago-Rodriguez TM, Boehm TK, Pride D. Bacteriophage and their potential roles in the human oral cavity. J Oral Microbiol. 2015; 7:27423. PMID: 25861745.
        View in: PubMed
      11. Santiago-Rodriguez TM, Naidu M, Jones MB, Ly M, Pride D. Identification of staphylococcal phage with reduced transcription in human blood through transcriptome sequencing. Front Microbiol. 2015; 6:216. PMID: 26074882.
        View in: PubMed
      12. Santiago-Rodriguez TM, Ly M, Bonilla N, Pride D. The human urine virome in association with urinary tract infections. Front Microbiol. 2015; 6:14. PMID: 25667584.
        View in: PubMed
      13. Abeles SR, Pride D. Molecular bases and role of viruses in the human microbiome. J Mol Biol. 2014 Nov 25; 426(23):3892-906. PMID: 25020228.
        View in: PubMed
      14. Naidu M, Robles-Sikisaka R, Abeles SR, Boehm TK, Pride D. Characterization of bacteriophage communities and CRISPR profiles from dental plaque. BMC Microbiol. 2014; 14:175. PMID: 24981669.
        View in: PubMed
      15. Robles-Sikisaka R, Naidu M, Ly M, Salzman J, Abeles SR, Boehm TK, Pride D. Conservation of streptococcal CRISPRs on human skin and saliva. BMC Microbiol. 2014; 14(1):146. PMID: 24903519.
        View in: PubMed
      16. Ly M, Abeles SR, Boehm TK, Robles-Sikisaka R, Naidu M, Santiago-Rodriguez T, Pride D. Altered oral viral ecology in association with periodontal disease. MBio. 2014; 5(3). PMID: 24846382.
        View in: PubMed
      17. Abeles SR, Robles-Sikisaka R, Ly M, Lum AG, Salzman J, Boehm TK, Pride D. Human oral viruses are personal, persistent and gender-consistent. ISME J. 2014 Sep; 8(9):1753-67. PMID: 24646696.
        View in: PubMed
      18. Robles-Sikisaka R, Ly M, Boehm T, Naidu M, Salzman J, Pride D. Association between living environment and human oral viral ecology. ISME J. 2013 Sep; 7(9):1710-24. PMID: 23598790.
        View in: PubMed
      19. Pride D, Salzman J, Relman DA. Comparisons of clustered regularly interspaced short palindromic repeats and viromes in human saliva reveal bacterial adaptations to salivary viruses. Environ Microbiol. 2012 Sep; 14(9):2564-76. PMID: 22583485.
        View in: PubMed
      20. Pride D, Salzman J, Haynes M, Rohwer F, Davis-Long C, White RA, Loomer P, Armitage GC, Relman DA. Evidence of a robust resident bacteriophage population revealed through analysis of the human salivary virome. ISME J. 2012 May; 6(5):915-26. PMID: 22158393.
        View in: PubMed
      21. Pride D, Sun CL, Salzman J, Rao N, Loomer P, Armitage GC, Banfield JF, Relman DA. Analysis of streptococcal CRISPRs from human saliva reveals substantial sequence diversity within and between subjects over time. Genome Res. 2011 Jan; 21(1):126-36. PMID: 21149389.
        View in: PubMed
      22. Willner D, Furlan M, Schmieder R, Grasis JA, Pride D, Relman DA, Angly FE, McDole T, Mariella RP, Rohwer F, Haynes M. Metagenomic detection of phage-encoded platelet-binding factors in the human oral cavity. Proc Natl Acad Sci U S A. 2011 Mar 15; 108 Suppl 1:4547-53. PMID: 20547834.
        View in: PubMed
      23. Pride D, Schoenfeld T. Genome signature analysis of thermal virus metagenomes reveals Archaea and thermophilic signatures. BMC Genomics. 2008; 9:420. PMID: 18798991.
        View in: PubMed
      24. Allen SS, Evans W, Carlisle J, Hajizadeh R, Nadaf M, Shepherd BE, Pride D, Johnson JE, Drake WP. Superoxide dismutase A antigens derived from molecular analysis of sarcoidosis granulomas elicit systemic Th-1 immune responses. Respir Res. 2008; 9:36. PMID: 18439270.
        View in: PubMed
      25. Pride D, Wassenaar TM, Ghose C, Blaser MJ. Evidence of host-virus co-evolution in tetranucleotide usage patterns of bacteriophages and eukaryotic viruses. BMC Genomics. 2006; 7:8. PMID: 16417644.
        View in: PubMed
      26. Pei Z, Yang L, Peek RM, Jr Levine SM, Pride D, Blaser MJ. Bacterial biota in reflux esophagitis and Barrett's esophagus. World J Gastroenterol. 2005 Dec 14; 11(46):7277-83. PMID: 16437628.
        View in: PubMed
      27. Pride D, Meinersmann RJ, Wassenaar TM, Blaser MJ. Evolutionary implications of microbial genome tetranucleotide frequency biases. Genome Res. 2003 Feb; 13(2):145-58. PMID: 12566393.
        View in: PubMed
      28. Ghose C, Perez-Perez GI, Dominguez-Bello MG, Pride D, Bravi CM, Blaser MJ. East Asian genotypes of Helicobacter pylori strains in Amerindians provide evidence for its ancient human carriage. Proc Natl Acad Sci U S A. 2002 Nov 12; 99(23):15107-11. PMID: 12417749.
        View in: PubMed
      29. Drake WP, Pei Z, Pride D, Collins RD, Cover TL, Blaser MJ. Molecular analysis of sarcoidosis tissues for mycobacterium species DNA. Emerg Infect Dis. 2002 Nov; 8(11):1334-41. PMID: 12453366.
        View in: PubMed
      30. Pride D, Blaser MJ. Concerted evolution between duplicated genetic elements in Helicobacter pylori. J Mol Biol. 2002 Feb 22; 316(3):629-42. PMID: 11866522.
        View in: PubMed
      31. Ando T, Peek RM, Pride D, Levine SM, Takata T, Lee YC, Kusugami K, van der Ende A, Kuipers EJ, Kusters JG, Blaser MJ. Polymorphisms of Helicobacter pylori HP0638 reflect geographic origin and correlate with cagA status. J Clin Microbiol. 2002 Jan; 40(1):239-46. PMID: 11773122.
        View in: PubMed
      32. Pride D, Meinersmann RJ, Blaser MJ. Allelic Variation within Helicobacter pylori babA and babB. Infect Immun. 2001 Feb; 69(2):1160-71. PMID: 11160014.
        View in: PubMed
      David's Networks
      Concepts
      Derived automatically from this person's publications.
      _
      Co-Authors
      People in Profiles who have published with this person.
      _
      Similar People
      People who share similar concepts with this person.
      _
      Same Department
      Physical Neighbors
      People whose addresses are nearby this person.
      _