David Pride

Title(s)Associate Professor, Pathology
SchoolVc-health Sciences-schools
Address9500 Gilman Drive #
La Jolla CA 92093
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    Collapse Research 
    Collapse Research Activities and Funding
    Developing synergistic antibiotic and phage cocktails to target bacterial pathogens
    NIH R21AI149354Feb 11, 2020 - Jan 31, 2022
    Role: Co-Principal Investigator
    Model systems to assess the role of viruses in the microbiome
    NIH R21AI133189Feb 15, 2018 - Jan 31, 2020
    Role: Principal Investigator
    Microbiome analysis of human oral bacteriophage communities
    NIH K08AI085028Aug 19, 2011 - Jul 31, 2014
    Role: Principal Investigator

    Collapse ORNG Applications 
    Collapse Clinical Trials

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    Collapse Publications
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Compositional Differences in the Oral Microbiome of E-cigarette Users. Front Microbiol. 2021; 12:599664. Chopyk J, Bojanowski CM, Shin J, Moshensky A, Fuentes AL, Bonde SS, Chuki D, Pride DT, Crotty Alexander LE. PMID: 34135868.
      View in: PubMed   Mentions:
    2. Impact of Vaginal Estrogen on the Urobiome in Postmenopausal Women With Recurrent Urinary Tract Infection. Female Pelvic Med Reconstr Surg. 2021 May 19. Jung CE, Estaki M, Chopyk J, Taylor BC, Gonzalez A, McDonald D, Shin J, Ferrante K, Wasenda E, Lippmann Q, Knight R, Pride D, Lukacz ES. PMID: 33978602.
      View in: PubMed   Mentions:    Fields:    
    3. Targeting Biofilm of MDR Providencia stuartii by Phages Using a Catheter Model. Antibiotics (Basel). 2021 Apr 02; 10(4). Rakov C, Ben Porat S, Alkalay-Oren S, Yerushalmy O, Abdalrhman M, Gronovich N, Huang L, Pride D, Coppenhagen-Glazer S, Nir-Paz R, Hazan R. PMID: 33918377.
      View in: PubMed   Mentions:
    4. Animal Models of Phage Therapy. Front Microbiol. 2021; 12:631794. Penziner S, Schooley RT, Pride DT. PMID: 33584632.
      View in: PubMed   Mentions:
    5. Intestinal Virome in Patients With Alcoholic Hepatitis. Hepatology. 2020 12; 72(6):2182-2196. Jiang L, Lang S, Duan Y, Zhang X, Gao B, Chopyk J, Schwanemann LK, Ventura-Cots M, Bataller R, Bosques-Padilla F, Verna EC, Abraldes JG, Brown RS, Vargas V, Altamirano J, Caballería J, Shawcross DL, Ho SB, Louvet A, Lucey MR, Mathurin P, Garcia-Tsao G, Kisseleva T, Brenner DA, Tu XM, Stärkel P, Pride D, Fouts DE, Schnabl B. PMID: 32654263.
      View in: PubMed   Mentions: 7     Fields:    Translation:HumansAnimalsCells
    6. Cervicovaginal Microbiome Composition Is Associated with Metabolic Profiles in Healthy Pregnancy. mBio. 2020 08 25; 11(4). Oliver A, LaMere B, Weihe C, Wandro S, Lindsay KL, Wadhwa PD, Mills DA, Pride DT, Fiehn O, Northen T, de Raad M, Li H, Martiny JBH, Lynch S, Whiteson K. PMID: 32843557.
      View in: PubMed   Mentions: 5     Fields:    Translation:Humans
    7. Intestinal Virome Signature Associated With Severity of Nonalcoholic Fatty Liver Disease. Gastroenterology. 2020 11; 159(5):1839-1852. Lang S, Demir M, Martin A, Jiang L, Zhang X, Duan Y, Gao B, Wisplinghoff H, Kasper P, Roderburg C, Tacke F, Steffen HM, Goeser T, Abraldes JG, Tu XM, Loomba R, Stärkel P, Pride D, Fouts DE, Schnabl B. PMID: 32652145.
      View in: PubMed   Mentions: 9     Fields:    Translation:Humans
    8. Temporal variations in bacterial community diversity and composition throughout intensive care unit renovations. Microbiome. 2020 06 08; 8(1):86. Chopyk J, Akrami K, Bavly T, Shin JH, Schwanemann LK, Ly M, Kalia R, Xu Y, Kelley ST, Malhotra A, Torriani FJ, Sweeney DA, Pride DT. PMID: 32513256.
      View in: PubMed   Mentions: 1     Fields:    Translation:CellsPHPublic Health
    9. Fecal Viral Community Responses to High-Fat Diet in Mice. mSphere. 2020 02 26; 5(1). Schulfer A, Santiago-Rodriguez TM, Ly M, Borin JM, Chopyk J, Blaser MJ, Pride DT. PMID: 32102942.
      View in: PubMed   Mentions: 4     Fields:    Translation:AnimalsCells
    10. Aseptic Barriers Allow a Clean Contact for Contaminated Stethoscope Diaphragms. Mayo Clin Proc Innov Qual Outcomes. 2020 Feb; 4(1):21-30. Vasudevan R, Shin JH, Chopyk J, Peacock WF, Torriani FJ, Maisel AS, Pride DT. PMID: 32055768.
      View in: PubMed   Mentions:
    11. Bacteriophage targeting of gut bacterium attenuates alcoholic liver disease. Nature. 2019 11; 575(7783):505-511. Duan Y, Llorente C, Lang S, Brandl K, Chu H, Jiang L, White RC, Clarke TH, Nguyen K, Torralba M, Shao Y, Liu J, Hernandez-Morales A, Lessor L, Rahman IR, Miyamoto Y, Ly M, Gao B, Sun W, Kiesel R, Hutmacher F, Lee S, Ventura-Cots M, Bosques-Padilla F, Verna EC, Abraldes JG, Brown RS, Vargas V, Altamirano J, Caballería J, Shawcross DL, Ho SB, Louvet A, Lucey MR, Mathurin P, Garcia-Tsao G, Bataller R, Tu XM, Eckmann L, van der Donk WA, Young R, Lawley TD, Stärkel P, Pride D, Fouts DE, Schnabl B. PMID: 31723265.
      View in: PubMed   Mentions: 87     Fields:    Translation:HumansAnimalsCells
    12. Benchmarking urine storage and collection conditions for evaluating the female urinary microbiome. Sci Rep. 2019 09 16; 9(1):13409. Jung CE, Chopyk J, Shin JH, Lukacz ES, Brubaker L, Schwanemann LK, Knight R, Wolfe AJ, Pride DT. PMID: 31527753.
      View in: PubMed   Mentions: 9     Fields:    Translation:HumansCells
    13. The Virome of Cerebrospinal Fluid: Viruses Where We Once Thought There Were None. Front Microbiol. 2019; 10:2061. Ghose C, Ly M, Schwanemann LK, Shin JH, Atab K, Barr JJ, Little M, Schooley RT, Chopyk J, Pride DT. PMID: 31555247.
      View in: PubMed   Mentions:
    14. Comparison of Three Nucleic Acid Amplification Tests and Culture for Detection of Group B Streptococcus from Enrichment Broth. J Clin Microbiol. 2019 06; 57(6). Shin JH, Pride DT. PMID: 30944190.
      View in: PubMed   Mentions: 4     Fields:    Translation:HumansCells
    15. A Rapid and Low-Cost Pathogen Detection Platform by Using a Molecular Agglutination Assay. ACS Cent Sci. 2018 Nov 28; 4(11):1485-1494. Wu TF, Chen YC, Wang WC, Fang YC, Fukuoka S, Pride DT, Pak OS. PMID: 30555900.
      View in: PubMed   Mentions:
    16. Comparison of Multiplex Gastrointestinal Pathogen Panel and Conventional Stool Testing for Evaluation of Diarrhea in Patients with Inflammatory Bowel Diseases. Dig Dis Sci. 2019 02; 64(2):382-390. Ahmad W, Nguyen NH, Boland BS, Dulai PS, Pride DT, Bouland D, Sandborn WJ, Singh S. PMID: 30361807.
      View in: PubMed   Mentions: 2     Fields:    Translation:HumansCells
    17. Shared and Distinct Features of Human Milk and Infant Stool Viromes. Front Microbiol. 2018; 9:1162. Pannaraj PS, Ly M, Cerini C, Saavedra M, Aldrovandi GM, Saboory AA, Johnson KM, Pride DT. PMID: 29910789.
      View in: PubMed   Mentions:
    18. Draft Genome Sequence of an Enterococcus faecalis ATCC 19433 Siphovirus Isolated from Raw Domestic Sewage. Genome Announc. 2017 Jan 19; 5(3). Santiago-Rodriguez TM, Ly M, Pride DT, Toranzos GA. PMID: 28104647.
      View in: PubMed   Mentions:
    19. Transmission of viruses via our microbiomes. Microbiome. 2016 Dec 02; 4(1):64. Ly M, Jones MB, Abeles SR, Santiago-Rodriguez TM, Gao J, Chan IC, Ghose C, Pride DT. PMID: 27912785.
      View in: PubMed   Mentions: 19     Fields:    Translation:HumansCells
    20. Microbial diversity in individuals and their household contacts following typical antibiotic courses. Microbiome. 2016 07 30; 4(1):39. Abeles SR, Jones MB, Santiago-Rodriguez TM, Ly M, Klitgord N, Yooseph S, Nelson KE, Pride DT. PMID: 27473422.
      View in: PubMed   Mentions: 47     Fields:    Translation:HumansCells
    21. Immunogenicity and protective efficacy of recombinant Clostridium difficile flagellar protein FliC. Emerg Microbes Infect. 2016 Feb 03; 5:e8. Ghose C, Eugenis I, Sun X, Edwards AN, McBride SM, Pride DT, Kelly CP, Ho DD. PMID: 26839147.
      View in: PubMed   Mentions: 18     Fields:    Translation:HumansAnimalsCellsPHPublic Health
    22. Electronic cigarette inhalation alters innate immunity and airway cytokines while increasing the virulence of colonizing bacteria. J Mol Med (Berl). 2016 06; 94(6):667-79. Hwang JH, Lyes M, Sladewski K, Enany S, McEachern E, Mathew DP, Das S, Moshensky A, Bapat S, Pride DT, Ongkeko WM, Crotty Alexander LE. PMID: 26804311.
      View in: PubMed   Mentions: 80     Fields:    Translation:HumansAnimalsCells
    23. Chemostat culture systems support diverse bacteriophage communities from human feces. Microbiome. 2015 Nov 09; 3:58. Santiago-Rodriguez TM, Ly M, Daigneault MC, Brown IH, McDonald JA, Bonilla N, Vercoe EA, Pride DT. PMID: 26549756.
      View in: PubMed   Mentions: 11     Fields:    Translation:HumansCells
    24. Library preparation methodology can influence genomic and functional predictions in human microbiome research. Proc Natl Acad Sci U S A. 2015 Nov 10; 112(45):14024-9. Jones MB, Highlander SK, Anderson EL, Li W, Dayrit M, Klitgord N, Fabani MM, Seguritan V, Green J, Pride DT, Yooseph S, Biggs W, Nelson KE, Venter JC. PMID: 26512100.
      View in: PubMed   Mentions: 68     Fields:    Translation:HumansCells
    25. Effects of Long Term Antibiotic Therapy on Human Oral and Fecal Viromes. PLoS One. 2015; 10(8):e0134941. Abeles SR, Ly M, Santiago-Rodriguez TM, Pride DT. PMID: 26309137.
      View in: PubMed   Mentions: 35     Fields:    Translation:HumansCells
    26. Transcriptome analysis of bacteriophage communities in periodontal health and disease. BMC Genomics. 2015 Jul 28; 16:549. Santiago-Rodriguez TM, Naidu M, Abeles SR, Boehm TK, Ly M, Pride DT. PMID: 26215258.
      View in: PubMed   Mentions: 21     Fields:    Translation:HumansCells
    27. Global transcription of CRISPR loci in the human oral cavity. BMC Genomics. 2015 May 21; 16:401. Lum AG, Ly M, Santiago-Rodriguez TM, Naidu M, Boehm TK, Pride DT. PMID: 25994215.
      View in: PubMed   Mentions: 6     Fields:    Translation:HumansCells
    28. Bacteriophage and their potential roles in the human oral cavity. J Oral Microbiol. 2015; 7:27423. Edlund A, Santiago-Rodriguez TM, Boehm TK, Pride DT. PMID: 25861745.
      View in: PubMed   Mentions:
    29. Identification of staphylococcal phage with reduced transcription in human blood through transcriptome sequencing. Front Microbiol. 2015; 6:216. Santiago-Rodriguez TM, Naidu M, Jones MB, Ly M, Pride DT. PMID: 26074882.
      View in: PubMed   Mentions:
    30. The human urine virome in association with urinary tract infections. Front Microbiol. 2015; 6:14. Santiago-Rodriguez TM, Ly M, Bonilla N, Pride DT. PMID: 25667584.
      View in: PubMed   Mentions:
    31. Molecular bases and role of viruses in the human microbiome. J Mol Biol. 2014 Nov 25; 426(23):3892-906. Abeles SR, Pride DT. PMID: 25020228.
      View in: PubMed   Mentions: 46     Fields:    Translation:HumansCells
    32. Characterization of bacteriophage communities and CRISPR profiles from dental plaque. BMC Microbiol. 2014 Jun 30; 14:175. Naidu M, Robles-Sikisaka R, Abeles SR, Boehm TK, Pride DT. PMID: 24981669.
      View in: PubMed   Mentions: 19     Fields:    Translation:HumansCells
    33. Conservation of streptococcal CRISPRs on human skin and saliva. BMC Microbiol. 2014 Jun 06; 14:146. Robles-Sikisaka R, Naidu M, Ly M, Salzman J, Abeles SR, Boehm TK, Pride DT. PMID: 24903519.
      View in: PubMed   Mentions: 9     Fields:    Translation:HumansCells
    34. Altered oral viral ecology in association with periodontal disease. mBio. 2014 May 20; 5(3):e01133-14. Ly M, Abeles SR, Boehm TK, Robles-Sikisaka R, Naidu M, Santiago-Rodriguez T, Pride DT. PMID: 24846382.
      View in: PubMed   Mentions: 47     Fields:    Translation:HumansCells
    35. Human oral viruses are personal, persistent and gender-consistent. ISME J. 2014 Sep; 8(9):1753-67. Abeles SR, Robles-Sikisaka R, Ly M, Lum AG, Salzman J, Boehm TK, Pride DT. PMID: 24646696.
      View in: PubMed   Mentions: 47     Fields:    Translation:HumansCells
    36. Association between living environment and human oral viral ecology. ISME J. 2013 Sep; 7(9):1710-24. Robles-Sikisaka R, Ly M, Boehm T, Naidu M, Salzman J, Pride DT. PMID: 23598790.
      View in: PubMed   Mentions: 42     Fields:    Translation:HumansCellsPHPublic Health
    37. Comparisons of clustered regularly interspaced short palindromic repeats and viromes in human saliva reveal bacterial adaptations to salivary viruses. Environ Microbiol. 2012 Sep; 14(9):2564-76. Pride DT, Salzman J, Relman DA. PMID: 22583485.
      View in: PubMed   Mentions: 30     Fields:    Translation:HumansCells
    38. Evidence of a robust resident bacteriophage population revealed through analysis of the human salivary virome. ISME J. 2012 May; 6(5):915-26. Pride DT, Salzman J, Haynes M, Rohwer F, Davis-Long C, White RA, Loomer P, Armitage GC, Relman DA. PMID: 22158393.
      View in: PubMed   Mentions: 112     Fields:    Translation:HumansCells
    39. Analysis of streptococcal CRISPRs from human saliva reveals substantial sequence diversity within and between subjects over time. Genome Res. 2011 Jan; 21(1):126-36. Pride DT, Sun CL, Salzman J, Rao N, Loomer P, Armitage GC, Banfield JF, Relman DA. PMID: 21149389.
      View in: PubMed   Mentions: 54     Fields:    Translation:HumansCells
    40. Metagenomic detection of phage-encoded platelet-binding factors in the human oral cavity. Proc Natl Acad Sci U S A. 2011 Mar 15; 108 Suppl 1:4547-53. Willner D, Furlan M, Schmieder R, Grasis JA, Pride DT, Relman DA, Angly FE, McDole T, Mariella RP, Rohwer F, Haynes M. PMID: 20547834.
      View in: PubMed   Mentions: 60     Fields:    Translation:HumansCells
    41. Genome signature analysis of thermal virus metagenomes reveals Archaea and thermophilic signatures. BMC Genomics. 2008 Sep 17; 9:420. Pride DT, Schoenfeld T. PMID: 18798991.
      View in: PubMed   Mentions: 9     Fields:    Translation:Cells
    42. Superoxide dismutase A antigens derived from molecular analysis of sarcoidosis granulomas elicit systemic Th-1 immune responses. Respir Res. 2008 Apr 25; 9:36. Allen SS, Evans W, Carlisle J, Hajizadeh R, Nadaf M, Shepherd BE, Pride DT, Johnson JE, Drake WP. PMID: 18439270.
      View in: PubMed   Mentions: 17     Fields:    Translation:HumansCells
    43. Evidence of host-virus co-evolution in tetranucleotide usage patterns of bacteriophages and eukaryotic viruses. BMC Genomics. 2006 Jan 18; 7:8. Pride DT, Wassenaar TM, Ghose C, Blaser MJ. PMID: 16417644.
      View in: PubMed   Mentions: 55     Fields:    Translation:HumansAnimalsCells
    44. Bacterial biota in reflux esophagitis and Barrett's esophagus. World J Gastroenterol. 2005 Dec 14; 11(46):7277-83. Pei Z, Yang L, Peek RM, Jr Levine SM, Pride DT, Blaser MJ. PMID: 16437628.
      View in: PubMed   Mentions: 41     Fields:    Translation:HumansCells
    45. Evolutionary implications of microbial genome tetranucleotide frequency biases. Genome Res. 2003 Feb; 13(2):145-58. Pride DT, Meinersmann RJ, Wassenaar TM, Blaser MJ. PMID: 12566393.
      View in: PubMed   Mentions: 94     Fields:    Translation:Cells
    46. East Asian genotypes of Helicobacter pylori strains in Amerindians provide evidence for its ancient human carriage. Proc Natl Acad Sci U S A. 2002 Nov 12; 99(23):15107-11. Ghose C, Perez-Perez GI, Dominguez-Bello MG, Pride DT, Bravi CM, Blaser MJ. PMID: 12417749.
      View in: PubMed   Mentions: 40     Fields:    Translation:HumansCells
    47. Molecular analysis of sarcoidosis tissues for mycobacterium species DNA. Emerg Infect Dis. 2002 Nov; 8(11):1334-41. Drake WP, Pei Z, Pride DT, Collins RD, Cover TL, Blaser MJ. PMID: 12453366.
      View in: PubMed   Mentions: 38     Fields:    Translation:HumansCells
    48. Concerted evolution between duplicated genetic elements in Helicobacter pylori. J Mol Biol. 2002 Feb 22; 316(3):629-42. Pride DT, Blaser MJ. PMID: 11866522.
      View in: PubMed   Mentions: 47     Fields:    Translation:Cells
    49. Polymorphisms of Helicobacter pylori HP0638 reflect geographic origin and correlate with cagA status. J Clin Microbiol. 2002 Jan; 40(1):239-46. Ando T, Peek RM, Pride D, Levine SM, Takata T, Lee YC, Kusugami K, van der Ende A, Kuipers EJ, Kusters JG, Blaser MJ. PMID: 11773122.
      View in: PubMed   Mentions: 31     Fields:    Translation:HumansCells
    50. Allelic Variation within Helicobacter pylori babA and babB. Infect Immun. 2001 Feb; 69(2):1160-71. Pride DT, Meinersmann RJ, Blaser MJ. PMID: 11160014.
      View in: PubMed   Mentions: 66     Fields:    Translation:Cells
    51. Case of Pneumonia with Violent Cerebral Symptoms. Glasgow Med J. 1872 May; 4(3):404-406. Pride D. PMID: 30432900.
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    52. Notes on the Treatment of Sciatica. Glasgow Med J. 1872 May; 4(3):378-379. Pride D. PMID: 30432910.
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    53. Notes of a Scarlet Fever Epidemic. Glasgow Med J. 1869 Aug; 1(4):440-453. Pride D. PMID: 30432668.
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    54. Remarks on Alcohol. Glasgow Med J. 1866 Dec; 1(8):305-312. Pride D. PMID: 30432604.
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    55. On Four Cases of Syphilis, with Remarks. Glasgow Med J. 1865 Oct; 13(51):316-319. Pride D. PMID: 30432459.
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    56. Case of Aortic Aneurism with a Spontaneously Curative Tendency, &c., with Remarks. Glasgow Med J. 1865 Apr; 13(49):65-70. Pride D. PMID: 30432414.
      View in: PubMed   Mentions:
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