Andrew Allen

Title(s)Professor, Scripps Institution of Oceanography Department
SchoolVc-marine Sciences
Address9500 Gilman Drive #
La Jolla CA 92093
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Flexible B12 ecophysiology of Phaeocystis antarctica due to a fusion B12-independent methionine synthase with widespread homologues. Proc Natl Acad Sci U S A. 2024 Feb 06; 121(6):e2204075121. Rao D, Füssy Z, Brisbin MM, McIlvin MR, Moran DM, Allen AE, Follows MJ, Saito MA. PMID: 38306482; PMCID: PMC10861871.
      View in: PubMed   Mentions:    Fields:    Translation:Animals
    2. Publisher Correction: Progress and challenges in exploring aquatic microbial communities using non-targeted metabolomics. ISME J. 2023 Dec; 17(12):2459. Thukral M, Allen AE, Petras D. PMID: 37993599; PMCID: PMC10689745.
      View in: PubMed   Mentions:    Fields:    
    3. Two plastidial lysophosphatidic acid acyltransferases differentially mediate the biosynthesis of membrane lipids and triacylglycerols in Phaeodactylum tricornutum. New Phytol. 2024 Feb; 241(4):1543-1558. You L, Polonska A, Jasieniecka-Gazarkiewicz K, Richard F, Jouhet J, Maréchal E, Banas A, Hu H, Pan Y, Hao X, Jin H, Allen AE, Amato A, Gong Y. PMID: 38031462.
      View in: PubMed   Mentions:    Fields:    Translation:Cells
    4. Short-term acidification promotes diverse iron acquisition and conservation mechanisms in upwelling-associated phytoplankton. Nat Commun. 2023 11 08; 14(1):7215. Lampe RH, Coale TH, Forsch KO, Jabre LJ, Kekuewa S, Bertrand EM, Horák A, Oborník M, Rabines AJ, Rowland E, Zheng H, Andersson AJ, Barbeau KA, Allen AE. PMID: 37940668; PMCID: PMC10632500.
      View in: PubMed   Mentions:    Fields:    
    5. Molecular Forecasting of Domoic Acid during a Pervasive Toxic Diatom Bloom. bioRxiv. 2023 Nov 05. Brunson JK, Thukral M, Ryan JP, Anderson CR, Kolody BC, James C, Chavez FP, Leaw CP, Rabines AJ, Venepally P, Zheng H, Kudela RM, Smith GJ, Moore BS, Allen AE. PMID: 37961417; PMCID: PMC10635071.
      View in: PubMed   Mentions:
    6. Progress and challenges in exploring aquatic microbial communities using non-targeted metabolomics. ISME J. 2023 Dec; 17(12):2147-2159. Thukral M, Allen AE, Petras D. PMID: 37857709; PMCID: PMC10689791.
      View in: PubMed   Mentions: 1     Fields:    
    7. Species-specific responses of marine bacteria to environmental perturbation. ISME Commun. 2023 Sep 22; 3(1):99. Peña-Montenegro TD, Kleindienst S, Allen AE, Eren AM, McCrow JP, Sánchez-Calderón JD, Arnold J, Joye SB. PMID: 37736763; PMCID: PMC10516948.
      View in: PubMed   Mentions: 1  
    8. Host and Water Microbiota Are Differentially Linked to Potential Human Pathogen Accumulation in Oysters. Appl Environ Microbiol. 2023 07 26; 89(7):e0031823. Diner RE, Zimmer-Faust A, Cooksey E, Allard S, Kodera SM, Kunselman E, Garodia Y, Verhougstraete MP, Allen AE, Griffith J, Gilbert JA. PMID: 37318344; PMCID: PMC10370324.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansAnimalsCells
    9. In vivo localization of iron starvation induced proteins under variable iron supplementation regimes in Phaeodactylum tricornutum. Plant Direct. 2022 Dec; 6(12):e472. Kazamia E, Mach J, McQuaid JB, Gao X, Coale TH, Malych R, Camadro JM, Lesuisse E, Allen AE, Bowler C, Sutak R. PMID: 36582220; PMCID: PMC9792268.
      View in: PubMed   Mentions:
    10. Illuminating the dark metabolome of Pseudo-nitzschia-microbiome associations. Environ Microbiol. 2022 11; 24(11):5408-5424. Koester I, Quinlan ZA, Nothias LF, White ME, Rabines A, Petras D, Brunson JK, Dührkop K, Ludwig M, Böcker S, Azam F, Allen AE, Dorrestein PC, Aluwihare LI. PMID: 36222155; PMCID: PMC9707391.
      View in: PubMed   Mentions: 4     Fields:    Translation:Animals
    11. Publisher Correction: Influence of nutrient supply on plankton microbiome biodiversity and distribution in a coastal upwelling region. Nat Commun. 2022 May 18; 13(1):2887. James CC, Barton AD, Allen LZ, Lampe RH, Rabines A, Schulberg A, Zheng H, Goericke R, Goodwin KD, Allen AE. PMID: 35585093; PMCID: PMC9117326.
      View in: PubMed   Mentions:    Fields:    
    12. Influence of nutrient supply on plankton microbiome biodiversity and distribution in a coastal upwelling region. Nat Commun. 2022 05 04; 13(1):2448. James CC, Barton AD, Allen LZ, Lampe RH, Rabines A, Schulberg A, Zheng H, Goericke R, Goodwin KD, Allen AE. PMID: 35508497; PMCID: PMC9068609.
      View in: PubMed   Mentions: 7     Fields:    
    13. Adaptive responses of marine diatoms to zinc scarcity and ecological implications. Nat Commun. 2022 04 14; 13(1):1995. Kellogg RM, Moosburner MA, Cohen NR, Hawco NJ, McIlvin MR, Moran DM, DiTullio GR, Subhas AV, Allen AE, Saito MA. PMID: 35422102; PMCID: PMC9010474.
      View in: PubMed   Mentions: 3     Fields:    Translation:Animals
    14. Domoic acid biosynthesis in the red alga Chondria armata suggests a complex evolutionary history for toxin production. Proc Natl Acad Sci U S A. 2022 02 08; 119(6). Steele TS, Brunson JK, Maeno Y, Terada R, Allen AE, Yotsu-Yamashita M, Chekan JR, Moore BS. PMID: 35110408; PMCID: PMC8833176.
      View in: PubMed   Mentions: 3     Fields:    Translation:AnimalsCells
    15. GNPS Dashboard: collaborative exploration of mass spectrometry data in the web browser. Nat Methods. 2022 02; 19(2):134-136. Petras D, Phelan VV, Acharya D, Allen AE, Aron AT, Bandeira N, Bowen BP, Belle-Oudry D, Boecker S, Cummings DA, Deutsch JM, Fahy E, Garg N, Gregor R, Handelsman J, Navarro-Hoyos M, Jarmusch AK, Jarmusch SA, Louie K, Maloney KN, Marty MT, Meijler MM, Mizrahi I, Neve RL, Northen TR, Molina-Santiago C, Panitchpakdi M, Pullman B, Puri AW, Schmid R, Subramaniam S, Thukral M, Vasquez-Castro F, Dorrestein PC, Wang M. PMID: 34862502; PMCID: PMC8831450.
      View in: PubMed   Mentions: 20     Fields:    
    16. Proteomic analysis of metabolic pathways supports chloroplast-mitochondria cross-talk in a Cu-limited diatom. Plant Direct. 2022 Jan; 6(1):e376. Hippmann AA, Schuback N, Moon KM, McCrow JP, Allen AE, Foster LF, Green BR, Maldonado MT. PMID: 35079683; PMCID: PMC8777261.
      View in: PubMed   Mentions: 3  
    17. Blowin' in the wind: Dispersal, structure, and metacommunity dynamics of aeolian diatoms in the McMurdo Sound region, Antarctica. J Phycol. 2022 02; 58(1):36-54. Schulte NO, Khan AL, Smith EW, Zoumplis A, Kaul D, Allen AE, Adams BJ, McKnight DM. PMID: 34817069.
      View in: PubMed   Mentions: 4     Fields:    Translation:Animals
    18. Multiplexed CRISPR/Cas9 editing of the long-chain acyl-CoA synthetase family in the diatom Phaeodactylum tricornutum reveals that mitochondrial ptACSL3 is involved in the synthesis of storage lipids. New Phytol. 2022 02; 233(4):1797-1812. Hao X, Chen W, Amato A, Jouhet J, Maréchal E, Moog D, Hu H, Jin H, You L, Huang F, Moosburner M, Allen AE, Gong Y. PMID: 34882804.
      View in: PubMed   Mentions: 8     Fields:    Translation:AnimalsCells
    19. Proteomic traits vary across taxa in a coastal Antarctic phytoplankton bloom. ISME J. 2022 02; 16(2):569-579. McCain JSP, Allen AE, Bertrand EM. PMID: 34482372; PMCID: PMC8776772.
      View in: PubMed   Mentions: 3     Fields:    Translation:Animals
    20. Relating sinking and suspended microbial communities in the California Current Ecosystem: digestion resistance and the contributions of phytoplankton taxa to export. Environ Microbiol. 2021 11; 23(11):6734-6748. Valencia B, Stukel MR, Allen AE, McCrow JP, Rabines A, Palenik B, Landry MR. PMID: 34431195.
      View in: PubMed   Mentions: 2     Fields:    Translation:Animals
    21. Cellular costs underpin micronutrient limitation in phytoplankton. Sci Adv. 2021 Aug; 7(32). McCain JSP, Tagliabue A, Susko E, Achterberg EP, Allen AE, Bertrand EM. PMID: 34362734; PMCID: PMC8346223.
      View in: PubMed   Mentions: 7     Fields:    
    22. Diploid genomic architecture of Nitzschia inconspicua, an elite biomass production diatom. Sci Rep. 2021 08 02; 11(1):15592. Oliver A, Podell S, Pinowska A, Traller JC, Smith SR, McClure R, Beliaev A, Bohutskyi P, Hill EA, Rabines A, Zheng H, Allen LZ, Kuo A, Grigoriev IV, Allen AE, Hazlebeck D, Allen EE. PMID: 34341414; PMCID: PMC8329260.
      View in: PubMed   Mentions: 7     Fields:    Translation:AnimalsCells
    23. Molecular underpinnings and biogeochemical consequences of enhanced diatom growth in a warming Southern Ocean. Proc Natl Acad Sci U S A. 2021 07 27; 118(30). Jabre LJ, Allen AE, McCain JSP, McCrow JP, Tenenbaum N, Spackeen JL, Sipler RE, Green BR, Bronk DA, Hutchins DA, Bertrand EM. PMID: 34301906; PMCID: PMC8325266.
      View in: PubMed   Mentions: 7     Fields:    Translation:AnimalsCells
    24. Pathogenic Vibrio Species Are Associated with Distinct Environmental Niches and Planktonic Taxa in Southern California (USA) Aquatic Microbiomes. mSystems. 2021 Aug 31; 6(4):e0057121. Diner RE, Kaul D, Rabines A, Zheng H, Steele JA, Griffith JF, Allen AE. PMID: 34227831; PMCID: PMC8407410.
      View in: PubMed   Mentions: 6     Fields:    
    25. Proximity proteomics in a marine diatom reveals a putative cell surface-to-chloroplast iron trafficking pathway. Elife. 2021 02 16; 10. Turnšek J, Brunson JK, Viedma MDPM, Deerinck TJ, Horák A, Oborník M, Bielinski VA, Allen AE. PMID: 33591270; PMCID: PMC7972479.
      View in: PubMed   Mentions: 11     Fields:    Translation:AnimalsCells
    26. Dinoflagellates alter their carbon and nutrient metabolic strategies across environmental gradients in the central Pacific Ocean. Nat Microbiol. 2021 02; 6(2):173-186. Cohen NR, McIlvin MR, Moran DM, Held NA, Saunders JK, Hawco NJ, Brosnahan M, DiTullio GR, Lamborg C, McCrow JP, Dupont CL, Allen AE, Saito MA. PMID: 33398100.
      View in: PubMed   Mentions: 19     Fields:    Translation:Animals
    27. Revealing ocean-scale biochemical structure with a deep-diving vertical profiling autonomous vehicle. Sci Robot. 2020 11 25; 5(48). Breier JA, Jakuba MV, Saito MA, Dick GJ, Grim SL, Chan EW, McIlvin MR, Moran DM, Alanis BA, Allen AE, Dupont CL, Johnson R. PMID: 33239321.
      View in: PubMed   Mentions: 2     Fields:    
    28. Common origin of ornithine-urea cycle in opisthokonts and stramenopiles. Sci Rep. 2020 10 07; 10(1):16687. Horák A, Allen AE, Oborník M. PMID: 33028894; PMCID: PMC7542463.
      View in: PubMed   Mentions: 4     Fields:    Translation:Animals
    29. Mitochondrial fatty acid β-oxidation is required for storage-lipid catabolism in a marine diatom. New Phytol. 2020 11; 228(3):946-958. Jallet D, Xing D, Hughes A, Moosburner M, Simmons MP, Allen AE, Peers G. PMID: 32535932.
      View in: PubMed   Mentions: 8     Fields:    Translation:AnimalsCells
    30. The Importance of Protein Phosphorylation for Signaling and Metabolism in Response to Diel Light Cycling and Nutrient Availability in a Marine Diatom. Biology (Basel). 2020 Jul 06; 9(7). Tan MH, Smith SR, Hixson KK, Tan J, McCarthy JK, Kustka AB, Allen AE. PMID: 32640597; PMCID: PMC7408324.
      View in: PubMed   Mentions: 1  
    31. Sierra Nevada mountain lake microbial communities are structured by temperature, resources and geographic location. Mol Ecol. 2020 06; 29(11):2080-2093. Schulhof MA, Allen AE, Allen EE, Mladenov N, McCrow JP, Jones NT, Blanton J, Cavalheri HB, Kaul D, Symons CC, Shurin JB. PMID: 32578266.
      View in: PubMed   Mentions: 2     Fields:    
    32. Publisher Correction: Genetic tool development in marine protists: emerging model organisms for experimental cell biology. Nat Methods. 2020 05; 17(5):551. Faktorová D, Nisbet RER, Fernández Robledo JA, Casacuberta E, Sudek L, Allen AE, Ares M, Aresté C, Balestreri C, Barbrook AC, Beardslee P, Bender S, Booth DS, Bouget FY, Bowler C, Breglia SA, Brownlee C, Burger G, Cerutti H, Cesaroni R, Chiurillo MA, Clemente T, Coles DB, Collier JL, Cooney EC, Coyne K, Docampo R, Dupont CL, Edgcomb V, Einarsson E, Elustondo PA, Federici F, Freire-Beneitez V, Freyria NJ, Fukuda K, García PA, Girguis PR, Gomaa F, Gornik SG, Guo J, Hampl V, Hanawa Y, Haro-Contreras ER, Hehenberger E, Highfield A, Hirakawa Y, Hopes A, Howe CJ, Hu I, Ibañez J, Irwin NAT, Ishii Y, Janowicz NE, Jones AC, Kachale A, Fujimura-Kamada K, Kaur B, Kaye JZ, Kazana E, Keeling PJ, King N, Klobutcher LA, Lander N, Lassadi I, Li Z, Lin S, Lozano JC, Luan F, Maruyama S, Matute T, Miceli C, Minagawa J, Moosburner M, Najle SR, Nanjappa D, Nimmo IC, Noble L, Novák Vanclová AMG, Nowacki M, Nuñez I, Pain A, Piersanti A, Pucciarelli S, Pyrih J, Rest JS, Rius M, Robertson D, Ruaud A, Ruiz-Trillo I, Sigg MA, Silver PA, Slamovits CH, Jason Smith G, Sprecher BN, Stern R, Swart EC, Tsaousis AD, Tsypin L, Turkewitz A, Turnšek J, Valach M, Vergé V, von Dassow P, von der Haar T, Waller RF, Wang L, Wen X, Wheeler G, Woods A, Zhang H, Mock T, Worden AZ, Lukeš J. PMID: 32296171; PMCID: PMC7200595.
      View in: PubMed   Mentions:    Fields:    
    33. Genetic tool development in marine protists: emerging model organisms for experimental cell biology. Nat Methods. 2020 05; 17(5):481-494. Faktorová D, Nisbet RER, Fernández Robledo JA, Casacuberta E, Sudek L, Allen AE, Ares M, Aresté C, Balestreri C, Barbrook AC, Beardslee P, Bender S, Booth DS, Bouget FY, Bowler C, Breglia SA, Brownlee C, Burger G, Cerutti H, Cesaroni R, Chiurillo MA, Clemente T, Coles DB, Collier JL, Cooney EC, Coyne K, Docampo R, Dupont CL, Edgcomb V, Einarsson E, Elustondo PA, Federici F, Freire-Beneitez V, Freyria NJ, Fukuda K, García PA, Girguis PR, Gomaa F, Gornik SG, Guo J, Hampl V, Hanawa Y, Haro-Contreras ER, Hehenberger E, Highfield A, Hirakawa Y, Hopes A, Howe CJ, Hu I, Ibañez J, Irwin NAT, Ishii Y, Janowicz NE, Jones AC, Kachale A, Fujimura-Kamada K, Kaur B, Kaye JZ, Kazana E, Keeling PJ, King N, Klobutcher LA, Lander N, Lassadi I, Li Z, Lin S, Lozano JC, Luan F, Maruyama S, Matute T, Miceli C, Minagawa J, Moosburner M, Najle SR, Nanjappa D, Nimmo IC, Noble L, Novák Vanclová AMG, Nowacki M, Nuñez I, Pain A, Piersanti A, Pucciarelli S, Pyrih J, Rest JS, Rius M, Robertson D, Ruaud A, Ruiz-Trillo I, Sigg MA, Silver PA, Slamovits CH, Jason Smith G, Sprecher BN, Stern R, Swart EC, Tsaousis AD, Tsypin L, Turkewitz A, Turnšek J, Valach M, Vergé V, von Dassow P, von der Haar T, Waller RF, Wang L, Wen X, Wheeler G, Woods A, Zhang H, Mock T, Worden AZ, Lukeš J. PMID: 32251396; PMCID: PMC7200600.
      View in: PubMed   Mentions: 39     Fields:    Translation:Animals
    34. Multiplexed Knockouts in the Model Diatom Phaeodactylum by Episomal Delivery of a Selectable Cas9. Front Microbiol. 2020; 11:5. Moosburner MA, Gholami P, McCarthy JK, Tan M, Bielinski VA, Allen AE. PMID: 32047486; PMCID: PMC6997545.
      View in: PubMed   Mentions: 9  
    35. Reduction-dependent siderophore assimilation in a model pennate diatom. Proc Natl Acad Sci U S A. 2019 11 19; 116(47):23609-23617. Coale TH, Moosburner M, Horák A, Oborník M, Barbeau KA, Allen AE. PMID: 31685631; PMCID: PMC6876252.
      View in: PubMed   Mentions: 23     Fields:    Translation:AnimalsCells
    36. Evolution and regulation of nitrogen flux through compartmentalized metabolic networks in a marine diatom. Nat Commun. 2019 10 07; 10(1):4552. Smith SR, Dupont CL, McCarthy JK, Broddrick JT, Oborník M, Horák A, Füssy Z, Cihlár J, Kleessen S, Zheng H, McCrow JP, Hixson KK, Araújo WL, Nunes-Nesi A, Fernie A, Nikoloski Z, Palsson BO, Allen AE. PMID: 31591397; PMCID: PMC6779911.
      View in: PubMed   Mentions: 38     Fields:    Translation:AnimalsCells
    37. Manganese and iron deficiency in Southern Ocean Phaeocystis antarctica populations revealed through taxon-specific protein indicators. Nat Commun. 2019 08 08; 10(1):3582. Wu M, McCain JSP, Rowland E, Middag R, Sandgren M, Allen AE, Bertrand EM. PMID: 31395884; PMCID: PMC6687791.
      View in: PubMed   Mentions: 13     Fields:    Translation:AnimalsCells
    38. Diel transcriptional response of a California Current plankton microbiome to light, low iron, and enduring viral infection. ISME J. 2019 11; 13(11):2817-2833. Kolody BC, McCrow JP, Allen LZ, Aylward FO, Fontanez KM, Moustafa A, Moniruzzaman M, Chavez FP, Scholin CA, Allen EE, Worden AZ, Delong EF, Allen AE. PMID: 31320727; PMCID: PMC6794264.
      View in: PubMed   Mentions: 27     Fields:    Translation:AnimalsCells
    39. Silicon limitation facilitates virus infection and mortality of marine diatoms. Nat Microbiol. 2019 11; 4(11):1790-1797. Kranzler CF, Krause JW, Brzezinski MA, Edwards BR, Biggs WP, Maniscalco M, McCrow JP, Van Mooy BAS, Bidle KD, Allen AE, Thamatrakoln K. PMID: 31308524.
      View in: PubMed   Mentions: 21     Fields:    Translation:AnimalsCellsPHPublic Health
    40. Cross-compartment metabolic coupling enables flexible photoprotective mechanisms in the diatom Phaeodactylum tricornutum. New Phytol. 2019 05; 222(3):1364-1379. Broddrick JT, Du N, Smith SR, Tsuji Y, Jallet D, Ware MA, Peers G, Matsuda Y, Dupont CL, Mitchell BG, Palsson BO, Allen AE. PMID: 30636322; PMCID: PMC6594073.
      View in: PubMed   Mentions: 15     Fields:    Translation:AnimalsCells
    41. Pervasive iron limitation at subsurface chlorophyll maxima of the California Current. Proc Natl Acad Sci U S A. 2018 12 26; 115(52):13300-13305. Hogle SL, Dupont CL, Hopkinson BM, King AL, Buck KN, Roe KL, Stuart RK, Allen AE, Mann EL, Johnson ZI, Barbeau KA. PMID: 30530699; PMCID: PMC6310781.
      View in: PubMed   Mentions: 11     Fields:    
    42. Downregulation of mitochondrial alternative oxidase affects chloroplast function, redox status and stress response in a marine diatom. New Phytol. 2019 02; 221(3):1303-1316. Murik O, Tirichine L, Prihoda J, Thomas Y, Araújo WL, Allen AE, Fernie AR, Bowler C. PMID: 30216452.
      View in: PubMed   Mentions: 16     Fields:    Translation:AnimalsCells
    43. Biosynthesis of the neurotoxin domoic acid in a bloom-forming diatom. Science. 2018 09 28; 361(6409):1356-1358. Brunson JK, McKinnie SMK, Chekan JR, McCrow JP, Miles ZD, Bertrand EM, Bielinski VA, Luhavaya H, Oborník M, Smith GJ, Hutchins DA, Allen AE, Moore BS. PMID: 30262498; PMCID: PMC6276376.
      View in: PubMed   Mentions: 46     Fields:    Translation:Animals
    44. Simultaneous quantum yield measurements of carbon uptake and oxygen evolution in microalgal cultures. PLoS One. 2018; 13(6):e0199125. Du N, Gholami P, Kline DI, DuPont CL, Dickson AG, Mendola D, Martz T, Allen AE, Mitchell BG. PMID: 29920568; PMCID: PMC6008153.
      View in: PubMed   Mentions: 1     Fields:    Translation:AnimalsCells
    45. Carbonate-sensitive phytotransferrin controls high-affinity iron uptake in diatoms. Nature. 2018 03 22; 555(7697):534-537. McQuaid JB, Kustka AB, Oborník M, Horák A, McCrow JP, Karas BJ, Zheng H, Kindeberg T, Andersson AJ, Barbeau KA, Allen AE. PMID: 29539640.
      View in: PubMed   Mentions: 42     Fields:    Translation:HumansAnimals
    46. Contrasting effects of copper limitation on the photosynthetic apparatus in two strains of the open ocean diatom Thalassiosira oceanica. PLoS One. 2017; 12(8):e0181753. Hippmann AA, Schuback N, Moon KM, McCrow JP, Allen AE, Foster LJ, Green BR, Maldonado MT. PMID: 28837661; PMCID: PMC5570362.
      View in: PubMed   Mentions: 6     Fields:    Translation:AnimalsCells
    47. Nitrate Reductase Knockout Uncouples Nitrate Transport from Nitrate Assimilation and Drives Repartitioning of Carbon Flux in a Model Pennate Diatom. Plant Cell. 2017 Aug; 29(8):2047-2070. McCarthy JK, Smith SR, McCrow JP, Tan M, Zheng H, Beeri K, Roth R, Lichtle C, Goodenough U, Bowler CP, Dupont CL, Allen AE. PMID: 28765511; PMCID: PMC5590495.
      View in: PubMed   Mentions: 35     Fields:    Translation:AnimalsCells
    48. Diatom centromeres suggest a mechanism for nuclear DNA acquisition. Proc Natl Acad Sci U S A. 2017 07 18; 114(29):E6015-E6024. Diner RE, Noddings CM, Lian NC, Kang AK, McQuaid JB, Jablanovic J, Espinoza JL, Nguyen NA, Anzelmatti MA, Jansson J, Bielinski VA, Karas BJ, Dupont CL, Allen AE, Weyman PD. PMID: 28673987; PMCID: PMC5530661.
      View in: PubMed   Mentions: 24     Fields:    Translation:AnimalsCells
    49. Nutrient Stoichiometry Shapes Microbial Community Structure in an Evaporitic Shallow Pond. Front Microbiol. 2017; 8:949. Lee ZM, Poret-Peterson AT, Siefert JL, Kaul D, Moustafa A, Allen AE, Dupont CL, Eguiarte LE, Souza V, Elser JJ. PMID: 28611750; PMCID: PMC5447685.
      View in: PubMed   Mentions: 14  
    50. Correction: Transcriptional Orchestration of the Global Cellular Response of a Model Pennate Diatom to Diel Light Cycling under Iron Limitation. PLoS Genet. 2017 03; 13(3):e1006688. Smith SR, Gillard JT, Kustka AB, McCrow JP, Badger JH, Zheng H, New AM, Dupont CL, Obata T, Fernie AR, Allen AE. PMID: 28355217; PMCID: PMC5371279.
      View in: PubMed   Mentions: 2     Fields:    
    51. Integrated Regulatory and Metabolic Networks of the Marine Diatom Phaeodactylum tricornutum Predict the Response to Rising CO2 Levels. mSystems. 2017 Jan-Feb; 2(1). Levering J, Dupont CL, Allen AE, Palsson BO, Zengler K. PMID: 28217746; PMCID: PMC5309336.
      View in: PubMed   Mentions: 16     Fields:    
    52. The Baltic Sea Virome: Diversity and Transcriptional Activity of DNA and RNA Viruses. mSystems. 2017 Jan-Feb; 2(1). Zeigler Allen L, McCrow JP, Ininbergs K, Dupont CL, Badger JH, Hoffman JM, Ekman M, Allen AE, Bergman B, Venter JC. PMID: 28217745; PMCID: PMC5309335.
      View in: PubMed   Mentions: 37     Fields:    
    53. Evolutionary genomics of the cold-adapted diatom Fragilariopsis cylindrus. Nature. 2017 01 26; 541(7638):536-540. Mock T, Otillar RP, Strauss J, McMullan M, Paajanen P, Schmutz J, Salamov A, Sanges R, Toseland A, Ward BJ, Allen AE, Dupont CL, Frickenhaus S, Maumus F, Veluchamy A, Wu T, Barry KW, Falciatore A, Ferrante MI, Fortunato AE, Glöckner G, Gruber A, Hipkin R, Janech MG, Kroth PG, Leese F, Lindquist EA, Lyon BR, Martin J, Mayer C, Parker M, Quesneville H, Raymond JA, Uhlig C, Valas RE, Valentin KU, Worden AZ, Armbrust EV, Clark MD, Bowler C, Green BR, Moulton V, van Oosterhout C, Grigoriev IV. PMID: 28092920.
      View in: PubMed   Mentions: 115     Fields:    Translation:AnimalsCells
    54. Transcriptional Orchestration of the Global Cellular Response of a Model Pennate Diatom to Diel Light Cycling under Iron Limitation. PLoS Genet. 2016 Dec; 12(12):e1006490. Smith SR, Gillard JT, Kustka AB, McCrow JP, Badger JH, Zheng H, New AM, Dupont CL, Obata T, Fernie AR, Allen AE. PMID: 27973599; PMCID: PMC5156380.
      View in: PubMed   Mentions: 43     Fields:    Translation:AnimalsCells
    55. Genome and methylome of the oleaginous diatom Cyclotella cryptica reveal genetic flexibility toward a high lipid phenotype. Biotechnol Biofuels. 2016; 9:258. Traller JC, Cokus SJ, Lopez DA, Gaidarenko O, Smith SR, McCrow JP, Gallaher SD, Podell S, Thompson M, Cook O, Morselli M, Jaroszewicz A, Allen EE, Allen AE, Merchant SS, Pellegrini M, Hildebrand M. PMID: 27933100; PMCID: PMC5124317.
      View in: PubMed   Mentions: 28  
    56. Probing the evolution, ecology and physiology of marine protists using transcriptomics. Nat Rev Microbiol. 2017 01; 15(1):6-20. Caron DA, Alexander H, Allen AE, Archibald JM, Armbrust EV, Bachy C, Bell CJ, Bharti A, Dyhrman ST, Guida SM, Heidelberg KB, Kaye JZ, Metzner J, Smith SR, Worden AZ. PMID: 27867198.
      View in: PubMed   Mentions: 57     Fields:    Translation:AnimalsCells
    57. Patterns of Transcript Abundance of Eukaryotic Biogeochemically-Relevant Genes in the Amazon River Plume. PLoS One. 2016; 11(9):e0160929. Zielinski BL, Allen AE, Carpenter EJ, Coles VJ, Crump BC, Doherty M, Foster RA, Goes JI, Gomes HR, Hood RR, McCrow JP, Montoya JP, Moustafa A, Satinsky BM, Sharma S, Smith CB, Yager PL, Paul JH. PMID: 27598790; PMCID: PMC5012681.
      View in: PubMed   Mentions: 4     Fields:    Translation:AnimalsCellsPHPublic Health
    58. Refinement of the Diatom Episome Maintenance Sequence and Improvement of Conjugation-Based DNA Delivery Methods. Front Bioeng Biotechnol. 2016; 4:65. Diner RE, Bielinski VA, Dupont CL, Allen AE, Weyman PD. PMID: 27551676; PMCID: PMC4976089.
      View in: PubMed   Mentions: 23  
    59. Diversity and Expression of Bacterial Metacaspases in an Aquatic Ecosystem. Front Microbiol. 2016; 7:1043. Asplund-Samuelsson J, Sundh J, Dupont CL, Allen AE, McCrow JP, Celepli NA, Bergman B, Ininbergs K, Ekman M. PMID: 27458440; PMCID: PMC4933709.
      View in: PubMed   Mentions: 16  
    60. Genetic Manipulation of Competition for Nitrate between Heterotrophic Bacteria and Diatoms. Front Microbiol. 2016; 7:880. Diner RE, Schwenck SM, McCrow JP, Zheng H, Allen AE. PMID: 27375600; PMCID: PMC4899447.
      View in: PubMed   Mentions: 23  
    61. Metagenomic Analysis of the Indian Ocean Picocyanobacterial Community: Structure, Potential Function and Evolution. PLoS One. 2016; 11(5):e0155757. Díez B, Nylander JA, Ininbergs K, Dupont CL, Allen AE, Yooseph S, Rusch DB, Bergman B. PMID: 27196065; PMCID: PMC4890579.
      View in: PubMed   Mentions: 12     Fields:    Translation:Cells
    62. Genome-Scale Model Reveals Metabolic Basis of Biomass Partitioning in a Model Diatom. PLoS One. 2016; 11(5):e0155038. Levering J, Broddrick J, Dupont CL, Peers G, Beeri K, Mayers J, Gallina AA, Allen AE, Palsson BO, Zengler K. PMID: 27152931; PMCID: PMC4859558.
      View in: PubMed   Mentions: 41     Fields:    Translation:AnimalsCells
    63. Transcript level coordination of carbon pathways during silicon starvation-induced lipid accumulation in the diatom Thalassiosira pseudonana. New Phytol. 2016 May; 210(3):890-904. Smith SR, Glé C, Abbriano RM, Traller JC, Davis A, Trentacoste E, Vernet M, Allen AE, Hildebrand M. PMID: 26844818; PMCID: PMC5067629.
      View in: PubMed   Mentions: 24     Fields:    Translation:Animals
    64. Phytoplankton-bacterial interactions mediate micronutrient colimitation at the coastal Antarctic sea ice edge. Proc Natl Acad Sci U S A. 2015 Aug 11; 112(32):9938-43. Bertrand EM, McCrow JP, Moustafa A, Zheng H, McQuaid JB, Delmont TO, Post AF, Sipler RE, Spackeen JL, Xu K, Bronk DA, Hutchins DA, Allen AE. PMID: 26221022; PMCID: PMC4538660.
      View in: PubMed   Mentions: 84     Fields:    Translation:Cells
    65. An integrative analysis of post-translational histone modifications in the marine diatom Phaeodactylum tricornutum. Genome Biol. 2015 May 20; 16:102. Veluchamy A, Rastogi A, Lin X, Lombard B, Murik O, Thomas Y, Dingli F, Rivarola M, Ott S, Liu X, Sun Y, Rabinowicz PD, McCarthy J, Allen AE, Loew D, Bowler C, Tirichine L. PMID: 25990474; PMCID: PMC4504042.
      View in: PubMed   Mentions: 39     Fields:    Translation:AnimalsCells
    66. Designer diatom episomes delivered by bacterial conjugation. Nat Commun. 2015 Apr 21; 6:6925. Karas BJ, Diner RE, Lefebvre SC, McQuaid J, Phillips AP, Noddings CM, Brunson JK, Valas RE, Deerinck TJ, Jablanovic J, Gillard JT, Beeri K, Ellisman MH, Glass JI, Hutchison CA, Smith HO, Venter JC, Allen AE, Dupont CL, Weyman PD. PMID: 25897682; PMCID: PMC4411287.
      View in: PubMed   Mentions: 100     Fields:    Translation:AnimalsCells
    67. A novel protein, ubiquitous in marine phytoplankton, concentrates iron at the cell surface and facilitates uptake. Curr Biol. 2015 Feb 02; 25(3):364-371. Morrissey J, Sutak R, Paz-Yepes J, Tanaka A, Moustafa A, Veluchamy A, Thomas Y, Botebol H, Bouget FY, McQuaid JB, Tirichine L, Allen AE, Lesuisse E, Bowler C. PMID: 25557662.
      View in: PubMed   Mentions: 35     Fields:    Translation:AnimalsCells
    68. Genomes and gene expression across light and productivity gradients in eastern subtropical Pacific microbial communities. ISME J. 2015 May; 9(5):1076-92. Dupont CL, McCrow JP, Valas R, Moustafa A, Walworth N, Goodenough U, Roth R, Hogle SL, Bai J, Johnson ZI, Mann E, Palenik B, Barbeau KA, Venter JC, Allen AE. PMID: 25333462; PMCID: PMC4410273.
      View in: PubMed   Mentions: 40     Fields:    Translation:AnimalsCells
    69. Inactivation of Phaeodactylum tricornutum urease gene using transcription activator-like effector nuclease-based targeted mutagenesis. Plant Biotechnol J. 2015 May; 13(4):460-70. Weyman PD, Beeri K, Lefebvre SC, Rivera J, McCarthy JK, Heuberger AL, Peers G, Allen AE, Dupont CL. PMID: 25302562.
      View in: PubMed   Mentions: 35     Fields:    Translation:AnimalsCells
    70. Functional tradeoffs underpin salinity-driven divergence in microbial community composition. PLoS One. 2014; 9(2):e89549. Dupont CL, Larsson J, Yooseph S, Ininbergs K, Goll J, Asplund-Samuelsson J, McCrow JP, Celepli N, Allen LZ, Ekman M, Lucas AJ, Hagström Å, Thiagarajan M, Brindefalk B, Richter AR, Andersson AF, Tenney A, Lundin D, Tovchigrechko A, Nylander JA, Brami D, Badger JH, Allen AE, Rusch DB, Hoffman J, Norrby E, Friedman R, Pinhassi J, Venter JC, Bergman B. PMID: 24586863; PMCID: PMC3937345.
      View in: PubMed   Mentions: 78     Fields:    Translation:CellsPHPublic Health
    71. Assembly of eukaryotic algal chromosomes in yeast. J Biol Eng. 2013 Dec 10; 7(1):30. Karas BJ, Molparia B, Jablanovic J, Hermann WJ, Lin YC, Dupont CL, Tagwerker C, Yonemoto IT, Noskov VN, Chuang RY, Allen AE, Glass JI, Hutchison CA, Smith HO, Venter JC, Weyman PD. PMID: 24325901; PMCID: PMC4029449.
      View in: PubMed   Mentions: 31  
    72. Massive difference in synonymous substitution rates among mitochondrial, plastid, and nuclear genes of Phaeocystis algae. Mol Phylogenet Evol. 2014 Feb; 71:36-40. Smith DR, Arrigo KR, Alderkamp AC, Allen AE. PMID: 24216019.
      View in: PubMed   Mentions: 17     Fields:    Translation:AnimalsCells
    73. Dissolved and particulate trace metal micronutrients under the McMurdo Sound seasonal sea ice: basal sea ice communities as a capacitor for iron. Front Chem. 2013; 1:25. Noble AE, Moran DM, Allen AE, Saito MA. PMID: 24790953; PMCID: PMC3982526.
      View in: PubMed   Mentions: 6  
    74. Lineage specific gene family enrichment at the microscale in marine systems. Curr Opin Microbiol. 2013 Oct; 16(5):605-17. Allen AE, Allen LZ, McCrow JP. PMID: 24377115.
      View in: PubMed   Mentions: 12     Fields:    Translation:AnimalsCells
    75. Candidate phylum TM6 genome recovered from a hospital sink biofilm provides genomic insights into this uncultivated phylum. Proc Natl Acad Sci U S A. 2013 Jun 25; 110(26):E2390-9. McLean JS, Lombardo MJ, Badger JH, Edlund A, Novotny M, Yee-Greenbaum J, Vyahhi N, Hall AP, Yang Y, Dupont CL, Ziegler MG, Chitsaz H, Allen AE, Yooseph S, Tesler G, Pevzner PA, Friedman RM, Nealson KH, Venter JC, Lasken RS. PMID: 23754396; PMCID: PMC3696752.
      View in: PubMed   Mentions: 93     Fields:    Translation:HumansCellsPHPublic Health
    76. Contrasting genomic properties of free-living and particle-attached microbial assemblages within a coastal ecosystem. Front Microbiol. 2013; 4:120. Smith MW, Zeigler Allen L, Allen AE, Herfort L, Simon HM. PMID: 23750156; PMCID: PMC3668451.
      View in: PubMed   Mentions: 56  
    77. Transcriptomic analysis of metabolic function in the giant kelp, Macrocystis pyrifera, across depth and season. New Phytol. 2013 Apr; 198(2):398-407. Konotchick T, Dupont CL, Valas RE, Badger JH, Allen AE. PMID: 23488966; PMCID: PMC3644879.
      View in: PubMed   Mentions: 13     Fields:    Translation:Animals
    78. Insights into the role of DNA methylation in diatoms by genome-wide profiling in Phaeodactylum tricornutum. Nat Commun. 2013; 4:2091. Veluchamy A, Lin X, Maumus F, Rivarola M, Bhavsar J, Creasy T, O'Brien K, Sengamalay NA, Tallon LJ, Smith AD, Rayko E, Ahmed I, Le Crom S, Farrant GK, Sgro JY, Olson SA, Bondurant SS, Allen AE, Allen A, Rabinowicz PD, Sussman MR, Bowler C, Tirichine L. PMID: 23820484.
      View in: PubMed   Mentions: 39     Fields:    Translation:AnimalsCells
    79. Influence of vitamin B auxotrophy on nitrogen metabolism in eukaryotic phytoplankton. Front Microbiol. 2012; 3:375. Bertrand EM, Allen AE. PMID: 23091473; PMCID: PMC3476827.
      View in: PubMed   Mentions: 36  
    80. Whole transcriptome analysis of the silicon response of the diatom Thalassiosira pseudonana. BMC Genomics. 2012 Sep 20; 13:499. Shrestha RP, Tesson B, Norden-Krichmar T, Federowicz S, Hildebrand M, Allen AE. PMID: 22994549; PMCID: PMC3478156.
      View in: PubMed   Mentions: 39     Fields:    Translation:AnimalsCells
    81. Comparative genomics of plant-associated Pseudomonas spp.: insights into diversity and inheritance of traits involved in multitrophic interactions. PLoS Genet. 2012 Jul; 8(7):e1002784. Loper JE, Hassan KA, Mavrodi DV, Davis EW, Lim CK, Shaffer BT, Elbourne LD, Stockwell VO, Hartney SL, Breakwell K, Henkels MD, Tetu SG, Rangel LI, Kidarsa TA, Wilson NL, van de Mortel JE, Song C, Blumhagen R, Radune D, Hostetler JB, Brinkac LM, Durkin AS, Kluepfel DA, Wechter WP, Anderson AJ, Kim YC, Pierson LS, Pierson EA, Lindow SE, Kobayashi DY, Raaijmakers JM, Weller DM, Thomashow LS, Allen AE, Paulsen IT. PMID: 22792073; PMCID: PMC3390384.
      View in: PubMed   Mentions: 265     Fields:    Translation:AnimalsCells
    82. Influence of cobalamin scarcity on diatom molecular physiology and identification of a cobalamin acquisition protein. Proc Natl Acad Sci U S A. 2012 Jun 26; 109(26):E1762-71. Bertrand EM, Allen AE, Dupont CL, Norden-Krichmar TM, Bai J, Valas RE, Saito MA. PMID: 22652568; PMCID: PMC3387067.
      View in: PubMed   Mentions: 42     Fields:    Translation:AnimalsCells
    83. Leveraging metabolomics for functional investigations in sequenced marine diatoms. Trends Plant Sci. 2012 Jul; 17(7):395-403. Fernie AR, Obata T, Allen AE, Araújo WL, Bowler C. PMID: 22465020.
      View in: PubMed   Mentions: 10     Fields:    Translation:Animals
    84. Influence of nutrients and currents on the genomic composition of microbes across an upwelling mosaic. ISME J. 2012 Jul; 6(7):1403-14. Zeigler Allen L, Allen EE, Badger JH, McCrow JP, Paulsen IT, Elbourne LD, Thiagarajan M, Rusch DB, Nealson KH, Williamson SJ, Venter JC, Allen AE. PMID: 22278668; PMCID: PMC3379637.
      View in: PubMed   Mentions: 54     Fields:    Translation:Cells
    85. Comparative metatranscriptomics identifies molecular bases for the physiological responses of phytoplankton to varying iron availability. Proc Natl Acad Sci U S A. 2012 Feb 07; 109(6):E317-25. Marchetti A, Schruth DM, Durkin CA, Parker MS, Kodner RB, Berthiaume CT, Morales R, Allen AE, Armbrust EV. PMID: 22308424; PMCID: PMC3277525.
      View in: PubMed   Mentions: 104     Fields:    Translation:AnimalsCells
    86. Evolution and functional diversification of fructose bisphosphate aldolase genes in photosynthetic marine diatoms. Mol Biol Evol. 2012 Jan; 29(1):367-79. Allen AE, Moustafa A, Montsant A, Eckert A, Kroth PG, Bowler C. PMID: 21903677; PMCID: PMC3245544.
      View in: PubMed   Mentions: 28     Fields:    Translation:AnimalsCells
    87. Characterization of the small RNA transcriptome of the diatom, Thalassiosira pseudonana. PLoS One. 2011; 6(8):e22870. Norden-Krichmar TM, Allen AE, Gaasterland T, Hildebrand M. PMID: 21857960; PMCID: PMC3155517.
      View in: PubMed   Mentions: 15     Fields:    Translation:AnimalsCells
    88. Genomes of uncultured eukaryotes: sorting FACS from fiction. Genome Biol. 2011 Jun 27; 12(6):117. Worden AZ, Dupont C, Allen AE. PMID: 21722350; PMCID: PMC3218834.
      View in: PubMed   Mentions: 7     Fields:    Translation:Animals
    89. Evolution and metabolic significance of the urea cycle in photosynthetic diatoms. Nature. 2011 May 12; 473(7346):203-7. Allen AE, Dupont CL, Oborník M, Horák A, Nunes-Nesi A, McCrow JP, Zheng H, Johnson DA, Hu H, Fernie AR, Bowler C. PMID: 21562560.
      View in: PubMed   Mentions: 153     Fields:    Translation:AnimalsCells
    90. Localization of putative carbonic anhydrases in two marine diatoms, Phaeodactylum tricornutum and Thalassiosira pseudonana. Photosynth Res. 2011 Sep; 109(1-3):205-21. Tachibana M, Allen AE, Kikutani S, Endo Y, Bowler C, Matsuda Y. PMID: 21365259.
      View in: PubMed   Mentions: 50     Fields:    Translation:AnimalsCells
    91. Efficiency of the CO2-concentrating mechanism of diatoms. Proc Natl Acad Sci U S A. 2011 Mar 08; 108(10):3830-7. Hopkinson BM, Dupont CL, Allen AE, Morel FM. PMID: 21321195; PMCID: PMC3054024.
      View in: PubMed   Mentions: 91     Fields:    Translation:AnimalsCells
    92. Genomic and functional adaptation in surface ocean planktonic prokaryotes. Nature. 2010 Nov 04; 468(7320):60-6. Yooseph S, Nealson KH, Rusch DB, McCrow JP, Dupont CL, Kim M, Johnson J, Montgomery R, Ferriera S, Beeson K, Williamson SJ, Tovchigrechko A, Allen AE, Zeigler LA, Sutton G, Eisenstadt E, Rogers YH, Friedman R, Frazier M, Venter JC. PMID: 21048761.
      View in: PubMed   Mentions: 120     Fields:    Translation:CellsPHPublic Health
    93. Digital expression profiling of novel diatom transcripts provides insight into their biological functions. Genome Biol. 2010; 11(8):R85. Maheswari U, Jabbari K, Petit JL, Porcel BM, Allen AE, Cadoret JP, De Martino A, Heijde M, Kaas R, La Roche J, Lopez PJ, Martin-Jézéquel V, Meichenin A, Mock T, Schnitzler Parker M, Vardi A, Armbrust EV, Weissenbach J, Katinka M, Bowler C. PMID: 20738856; PMCID: PMC2945787.
      View in: PubMed   Mentions: 33     Fields:    Translation:Animals
    94. Targeted metagenomics and ecology of globally important uncultured eukaryotic phytoplankton. Proc Natl Acad Sci U S A. 2010 Aug 17; 107(33):14679-84. Cuvelier ML, Allen AE, Monier A, McCrow JP, Messié M, Tringe SG, Woyke T, Welsh RM, Ishoey T, Lee JH, Binder BJ, DuPont CL, Latasa M, Guigand C, Buck KR, Hilton J, Thiagarajan M, Caler E, Read B, Lasken RS, Chavez FP, Worden AZ. PMID: 20668244; PMCID: PMC2930470.
      View in: PubMed   Mentions: 85     Fields:    Translation:AnimalsCells
    95. Oceanographic and biogeochemical insights from diatom genomes. Ann Rev Mar Sci. 2010; 2:333-65. Bowler C, Vardi A, Allen AE. PMID: 21141668.
      View in: PubMed   Mentions: 72     Fields:    Translation:Animals
    96. Potential impact of stress activated retrotransposons on genome evolution in a marine diatom. BMC Genomics. 2009 Dec 22; 10:624. Maumus F, Allen AE, Mhiri C, Hu H, Jabbari K, Vardi A, Grandbastien MA, Bowler C. PMID: 20028555; PMCID: PMC2806351.
      View in: PubMed   Mentions: 41     Fields:    Translation:AnimalsCells
    97. Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas. Science. 2009 Apr 10; 324(5924):268-72. Worden AZ, Lee JH, Mock T, Rouzé P, Simmons MP, Aerts AL, Allen AE, Cuvelier ML, Derelle E, Everett MV, Foulon E, Grimwood J, Gundlach H, Henrissat B, Napoli C, McDonald SM, Parker MS, Rombauts S, Salamov A, Von Dassow P, Badger JH, Coutinho PM, Demir E, Dubchak I, Gentemann C, Eikrem W, Gready JE, John U, Lanier W, Lindquist EA, Lucas S, Mayer KF, Moreau H, Not F, Otillar R, Panaud O, Pangilinan J, Paulsen I, Piegu B, Poliakov A, Robbens S, Schmutz J, Toulza E, Wyss T, Zelensky A, Zhou K, Armbrust EV, Bhattacharya D, Goodenough UW, Van de Peer Y, Grigoriev IV. PMID: 19359590.
      View in: PubMed   Mentions: 263     Fields:    Translation:AnimalsCells
    98. Comparative day/night metatranscriptomic analysis of microbial communities in the North Pacific subtropical gyre. Environ Microbiol. 2009 Jun; 11(6):1358-75. Poretsky RS, Hewson I, Sun S, Allen AE, Zehr JP, Moran MA. PMID: 19207571.
      View in: PubMed   Mentions: 120     Fields:    Translation:Cells
    99. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Nature. 2008 Nov 13; 456(7219):239-44. Bowler C, Allen AE, Badger JH, Grimwood J, Jabbari K, Kuo A, Maheswari U, Martens C, Maumus F, Otillar RP, Rayko E, Salamov A, Vandepoele K, Beszteri B, Gruber A, Heijde M, Katinka M, Mock T, Valentin K, Verret F, Berges JA, Brownlee C, Cadoret JP, Chiovitti A, Choi CJ, Coesel S, De Martino A, Detter JC, Durkin C, Falciatore A, Fournet J, Haruta M, Huysman MJ, Jenkins BD, Jiroutova K, Jorgensen RE, Joubert Y, Kaplan A, Kröger N, Kroth PG, La Roche J, Lindquist E, Lommer M, Martin-Jézéquel V, Lopez PJ, Lucas S, Mangogna M, McGinnis K, Medlin LK, Montsant A, Oudot-Le Secq MP, Napoli C, Obornik M, Parker MS, Petit JL, Porcel BM, Poulsen N, Robison M, Rychlewski L, Rynearson TA, Schmutz J, Shapiro H, Siaut M, Stanley M, Sussman MR, Taylor AR, Vardi A, von Dassow P, Vyverman W, Willis A, Wyrwicz LS, Rokhsar DS, Weissenbach J, Armbrust EV, Green BR, Van de Peer Y, Grigoriev IV. PMID: 18923393.
      View in: PubMed   Mentions: 553     Fields:    Translation:AnimalsCells
    100. Whole-cell response of the pennate diatom Phaeodactylum tricornutum to iron starvation. Proc Natl Acad Sci U S A. 2008 Jul 29; 105(30):10438-43. Allen AE, Laroche J, Maheswari U, Lommer M, Schauer N, Lopez PJ, Finazzi G, Fernie AR, Bowler C. PMID: 18653757; PMCID: PMC2492447.
      View in: PubMed   Mentions: 155     Fields:    Translation:AnimalsCells
    101. An ecological and evolutionary context for integrated nitrogen metabolism and related signaling pathways in marine diatoms. Curr Opin Plant Biol. 2006 Jun; 9(3):264-73. Allen AE, Vardi A, Bowler C. PMID: 16603409.
      View in: PubMed   Mentions: 37     Fields:    Translation:AnimalsCells
    102. Prospects in diatom research. Curr Opin Biotechnol. 2005 Apr; 16(2):180-6. Lopez PJ, Desclés J, Allen AE, Bowler C. PMID: 15831384.
      View in: PubMed   Mentions: 26     Fields:    Translation:AnimalsCells
    103. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Science. 2004 Oct 01; 306(5693):79-86. Armbrust EV, Berges JA, Bowler C, Green BR, Martinez D, Putnam NH, Zhou S, Allen AE, Apt KE, Bechner M, Brzezinski MA, Chaal BK, Chiovitti A, Davis AK, Demarest MS, Detter JC, Glavina T, Goodstein D, Hadi MZ, Hellsten U, Hildebrand M, Jenkins BD, Jurka J, Kapitonov VV, Kröger N, Lau WW, Lane TW, Larimer FW, Lippmeier JC, Lucas S, Medina M, Montsant A, Obornik M, Parker MS, Palenik B, Pazour GJ, Richardson PM, Rynearson TA, Saito MA, Schwartz DC, Thamatrakoln K, Valentin K, Vardi A, Wilkerson FP, Rokhsar DS. PMID: 15459382.
      View in: PubMed   Mentions: 605     Fields:    Translation:AnimalsCells
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