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Intermittent Hypoxia and Hypercapnia Alter Diurnal Rhythms of Luminal Gut Microbiome and Metabolome. mSystems. 2021 Jun 29; e0011621.
Allaband C, Lingaraju A, Martino C, Russell B, Tripathi A, Poulsen O, Dantas Machado AC, Zhou D, Xue J, Elijah E, Malhotra A, Dorrestein PC, Knight R, Haddad GG, Zarrinpar A. PMID: 34184915.
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Microbiota Modulates Cardiac Transcriptional Responses to Intermittent Hypoxia and Hypercapnia. Front Physiol. 2021; 12:680275.
Zhou D, Xue J, Miyamoto Y, Poulsen O, Eckmann L, Haddad GG. PMID: 34248668.
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Influence of Intermittent Hypoxia/Hypercapnia on Atherosclerosis, Gut Microbiome, and Metabolome. Front Physiol. 2021; 12:663950.
Xue J, Allaband C, Zhou D, Poulsen O, Martino C, Jiang L, Tripathi A, Elijah E, Dorrestein PC, Knight R, Zarrinpar A, Haddad GG. PMID: 33897472.
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Multiple mechanisms drive genomic adaptation to extreme O2 levels in Drosophila melanogaster. Nat Commun. 2021 02 12; 12(1):997.
Iranmehr A, Stobdan T, Zhou D, Zhao H, Kryazhimskiy S, Bafna V, Haddad GG. PMID: 33579965.
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PubMed Mentions:
1 Fields:
Translation:
Animals
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Genetic interactions regulate hypoxia tolerance conferred by activating Notch in excitatory amino acid transporter 1-positive glial cells in Drosophila melanogaster. G3 (Bethesda). 2021 02 09; 11(2).
Zhou D, Stobdan T, Visk D, Xue J, Haddad GG. PMID: 33576765.
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PubMed Mentions: Fields:
Translation:
AnimalsCells
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Intermittent hypoxia and hypercapnia induces inhibitor of nuclear factor-?B kinase subunit ß-dependent atherosclerosis in pulmonary arteries. Am J Physiol Regul Integr Comp Physiol. 2019 12 01; 317(6):R763-R769.
Imamura T, Xue J, Poulsen O, Zhou D, Karin M, Haddad GG. PMID: 31618063.
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PubMed Mentions:
4 Fields:
Translation:
Animals
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Intermittent Hypoxia and Hypercapnia Reproducibly Change the Gut Microbiome and Metabolome across Rodent Model Systems. mSystems. 2019 Mar-Apr; 4(2).
Tripathi A, Xu ZZ, Xue J, Poulsen O, Gonzalez A, Humphrey G, Meehan MJ, Melnik AV, Ackermann G, Zhou D, Malhotra A, Haddad GG, Dorrestein PC, Knight R. PMID: 31058230.
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PubMed Mentions:
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High fat diet induces sex-specific differential gene expression in Drosophila melanogaster. PLoS One. 2019; 14(3):e0213474.
Stobdan T, Sahoo D, Azad P, Hartley I, Heinrichsen E, Zhou D, Haddad GG. PMID: 30861021.
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PubMed Mentions:
6 Fields:
Translation:
HumansAnimals
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Novel insight into the genetic basis of high-altitude pulmonary hypertension in Kyrgyz highlanders. Eur J Hum Genet. 2019 01; 27(1):150-159.
Iranmehr A, Stobdan T, Zhou D, Poulsen O, Strohl KP, Aldashev A, Telenti A, Wong EHM, Kirkness EF, Venter JC, Bafna V, Haddad GG. PMID: 30254217.
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PubMed Mentions:
2 Fields:
Translation:
Humans
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Cardiac-specific knockout and pharmacological inhibition of Endothelin receptor type B lead to cardiac resistance to extreme hypoxia. J Mol Med (Berl). 2018 09; 96(9):975-982.
Stobdan T, Zhou D, Williams AT, Cabrales P, Haddad GG. PMID: 30069745.
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PubMed Mentions:
4 Fields:
Translation:
AnimalsCells
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Exploring miRNA-mRNA regulatory network in cardiac pathology in Na+/H+ exchanger isoform 1 transgenic mice. Physiol Genomics. 2018 10 01; 50(10):846-861.
Xue J, Zhou D, Poulsen O, Hartley I, Imamura T, Xie EX, Haddad GG. PMID: 30029588.
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PubMed Mentions:
3 Fields:
Translation:
AnimalsCells
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Intermittent Hypoxia and Hypercapnia, a Hallmark of Obstructive Sleep Apnea, Alters the Gut Microbiome and Metabolome. mSystems. 2018 May-Jun; 3(3).
Tripathi A, Melnik AV, Xue J, Poulsen O, Meehan MJ, Humphrey G, Jiang L, Ackermann G, McDonald D, Zhou D, Knight R, Dorrestein PC, Haddad GG. PMID: 29896566.
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PubMed Mentions:
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New Insights into the Genetic Basis of Monge's Disease and Adaptation to High-Altitude. Mol Biol Evol. 2017 Dec 01; 34(12):3154-3168.
Stobdan T, Akbari A, Azad P, Zhou D, Poulsen O, Appenzeller O, Gonzales GF, Telenti A, Wong EHM, Saini S, Kirkness EF, Venter JC, Bafna V, Haddad GG. PMID: 29029226.
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PubMed Mentions:
7 Fields:
Translation:
HumansAnimals
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Intermittent Hypoxia and Hypercapnia Accelerate Atherosclerosis, Partially via Trimethylamine-Oxide. Am J Respir Cell Mol Biol. 2017 11; 57(5):581-588.
Xue J, Zhou D, Poulsen O, Imamura T, Hsiao YH, Smith TH, Malhotra A, Dorrestein P, Knight R, Haddad GG. PMID: 28678519.
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PubMed Mentions:
22 Fields:
Translation:
Animals
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High-altitude adaptation in humans: from genomics to integrative physiology. J Mol Med (Berl). 2017 Dec; 95(12):1269-1282.
Azad P, Stobdan T, Zhou D, Hartley I, Akbari A, Bafna V, Haddad GG. PMID: 28951950.
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PubMed Mentions:
15 Fields:
Translation:
Humans
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Senp1 drives hypoxia-induced polycythemia via GATA1 and Bcl-xL in subjects with Monge's disease. J Exp Med. 2016 11 14; 213(12):2729-2744.
Azad P, Zhao HW, Cabrales PJ, Ronen R, Zhou D, Poulsen O, Appenzeller O, Hsiao YH, Bafna V, Haddad GG. PMID: 27821551.
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PubMed Mentions:
12 Fields:
Translation:
HumansCells
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Experimental evolution of recombination and crossover interference in Drosophila caused by directional selection for stress-related traits. BMC Biol. 2015 Nov 27; 13:101.
Aggarwal DD, Rashkovetsky E, Michalak P, Cohen I, Ronin Y, Zhou D, Haddad GG, Korol AB. PMID: 26614097.
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PubMed Mentions:
9 Fields:
Translation:
AnimalsCells
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Shared Genetic Signals of Hypoxia Adaptation in Drosophila and in High-Altitude Human Populations. Mol Biol Evol. 2016 Feb; 33(2):501-17.
Jha AR, Zhou D, Brown CD, Kreitman M, Haddad GG, White KP. PMID: 26576852.
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PubMed Mentions:
21 Fields:
Translation:
HumansAnimals
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Endothelin receptor B, a candidate gene from human studies at high altitude, improves cardiac tolerance to hypoxia in genetically engineered heterozygote mice. Proc Natl Acad Sci U S A. 2015 Aug 18; 112(33):10425-30.
Stobdan T, Zhou D, Ao-Ieong E, Ortiz D, Ronen R, Hartley I, Gan Z, McCulloch AD, Bafna V, Cabrales P, Haddad GG. PMID: 26240367.
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PubMed Mentions:
21 Fields:
Translation:
HumansAnimals
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Altered iPSC-derived neurons' sodium channel properties in subjects with Monge's disease. Neuroscience. 2015 Mar 12; 288:187-99.
Zhao HW, Gu XQ, Chailangkarn T, Perkins G, Callacondo D, Appenzeller O, Poulsen O, Zhou D, Muotri AR, Haddad GG. PMID: 25559931.
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PubMed Mentions:
7 Fields:
Translation:
HumansCells
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The genetic basis of chronic mountain sickness. Physiology (Bethesda). 2014 Nov; 29(6):403-12.
Ronen R, Zhou D, Bafna V, Haddad GG. PMID: 25362634.
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PubMed Mentions:
14 Fields:
Translation:
Humans
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Wnt pathway activation increases hypoxia tolerance during development. PLoS One. 2014; 9(8):e103292.
Gersten M, Zhou D, Azad P, Haddad GG, Subramaniam S. PMID: 25093834.
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PubMed Mentions:
2 Fields:
Translation:
AnimalsCells
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Whole genome sequencing of Ethiopian highlanders reveals conserved hypoxia tolerance genes. Genome Biol. 2014 Feb 20; 15(2):R36.
Udpa N, Ronen R, Zhou D, Liang J, Stobdan T, Appenzeller O, Yin Y, Du Y, Guo L, Cao R, Wang Y, Jin X, Huang C, Jia W, Cao D, Guo G, Claydon VE, Hainsworth R, Gamboa JL, Zibenigus M, Zenebe G, Xue J, Liu S, Frazer KA, Li Y, Bafna V, Haddad GG. PMID: 24555826.
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PubMed Mentions:
32 Fields:
Translation:
HumansAnimalsCells
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Long-lasting changes in DNA methylation following short-term hypoxic exposure in primary hippocampal neuronal cultures. PLoS One. 2013; 8(10):e77859.
Hartley I, Elkhoury FF, Heon Shin J, Xie B, Gu X, Gao Y, Zhou D, Haddad GG. PMID: 24205000.
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PubMed Mentions:
22 Fields:
Translation:
AnimalsCells
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Quantitative evaluation of the mitochondrial proteomes of Drosophila melanogaster adapted to extreme oxygen conditions. PLoS One. 2013; 8(9):e74011.
Yin S, Xue J, Sun H, Wen B, Wang Q, Perkins G, Zhao HW, Ellisman MH, Hsiao YH, Yin L, Xie Y, Hou G, Zi J, Lin L, Haddad GG, Zhou D, Liu S. PMID: 24069262.
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PubMed Mentions:
9 Fields:
Translation:
AnimalsCells
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Whole-genome sequencing uncovers the genetic basis of chronic mountain sickness in Andean highlanders. Am J Hum Genet. 2013 Sep 05; 93(3):452-62.
Zhou D, Udpa N, Ronen R, Stobdan T, Liang J, Appenzeller O, Zhao HW, Yin Y, Du Y, Guo L, Cao R, Wang Y, Jin X, Huang C, Jia W, Cao D, Guo G, Gamboa JL, Villafuerte F, Callacondo D, Xue J, Liu S, Frazer KA, Li Y, Bafna V, Haddad GG. PMID: 23954164.
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PubMed Mentions:
41 Fields:
Translation:
HumansAnimalsCells
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Genetic analysis of hypoxia tolerance and susceptibility in Drosophila and humans. Annu Rev Genomics Hum Genet. 2013; 14:25-43.
Zhou D, Haddad GG. PMID: 23808366.
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PubMed Mentions:
20 Fields:
Translation:
HumansAnimals
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Multiscale modeling of the causal functional roles of nsSNPs in a genome-wide association study: application to hypoxia. BMC Genomics. 2013; 14 Suppl 3:S9.
Xie L, Ng C, Ali T, Valencia R, Ferreira BL, Xue V, Tanweer M, Zhou D, Haddad GG, Bourne PE, Xie L. PMID: 23819581.
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PubMed Mentions:
5 Fields:
Translation:
AnimalsCells
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Identification of genes underlying hypoxia tolerance in Drosophila by a P-element screen. G3 (Bethesda). 2012 Oct; 2(10):1169-78.
Azad P, Zhou D, Zarndt R, Haddad GG. PMID: 23050227.
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PubMed Mentions:
15 Fields:
Translation:
AnimalsCells
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Ultrastructural modifications in the mitochondria of hypoxia-adapted Drosophila melanogaster. PLoS One. 2012; 7(9):e45344.
Perkins G, Hsiao YH, Yin S, Tjong J, Tran MT, Lau J, Xue J, Liu S, Ellisman MH, Zhou D. PMID: 23028948.
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PubMed Mentions:
6 Fields:
Translation:
AnimalsCells
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Hypoxia-adaptation involves mitochondrial metabolic depression and decreased ROS leakage. PLoS One. 2012; 7(5):e36801.
Ali SS, Hsiao M, Zhao HW, Dugan LL, Haddad GG, Zhou D. PMID: 22574227.
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PubMed Mentions:
21 Fields:
Translation:
AnimalsCells
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Tests of selection in pooled case-control data: an empirical study. Front Genet. 2011; 2:83.
Udpa N, Zhou D, Haddad GG, Bafna V. PMID: 22303377.
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Identification of a neuronal gene expression signature: role of cell cycle arrest in murine neuronal differentiation in vitro. . 2011 Sep; 301(3):R727-45.
Felfly H, Xue J, Zambon AC, Muotri A, Zhou D, Haddad GG. PMID: 21677276.
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PubMed Mentions:
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Experimental selection of hypoxia-tolerant Drosophila melanogaster. Proc Natl Acad Sci U S A. 2011 Feb 08; 108(6):2349-54.
Zhou D, Udpa N, Gersten M, Visk DW, Bashir A, Xue J, Frazer KA, Posakony JW, Subramaniam S, Bafna V, Haddad GG. PMID: 21262834.
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PubMed Mentions:
58 Fields:
Translation:
AnimalsCells
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Severe Hypoxia: Consequences to Neural Stem Cells and Neurons. J Neurol Res. 2011; 1(5).
Felfly H, Zambon AC, Xue J, Muotri A, Zhou D, Snyder EY, Haddad GG. PMID: 24348887.
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PubMed Mentions:
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Antimicrobial peptides increase tolerance to oxidant stress in Drosophila melanogaster. J Biol Chem. 2011 Feb 25; 286(8):6211-8.
Zhao HW, Zhou D, Haddad GG. PMID: 21148307.
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PubMed Mentions:
15 Fields:
Translation:
Animals
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Experimental selection for Drosophila survival in extremely high O2 environments. PLoS One. 2010 Jul 23; 5(7):e11701.
Zhao HW, Zhou D, Nizet V, Haddad GG. PMID: 20668515.
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PubMed Mentions:
15 Fields:
Translation:
Animals
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Elevated myocardial Na+/H+ exchanger isoform 1 activity elicits gene expression that leads to cardiac hypertrophy. Physiol Genomics. 2010 Aug; 42(3):374-83.
Xue J, Mraiche F, Zhou D, Karmazyn M, Oka T, Fliegel L, Haddad GG. PMID: 20460605.
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PubMed Mentions:
12 Fields:
Translation:
AnimalsCells
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Metabolism as means for hypoxia adaptation: metabolic profiling and flux balance analysis. BMC Syst Biol. 2009 Sep 09; 3:91.
Feala JD, Coquin L, Zhou D, Haddad GG, Paternostro G, McCulloch AD. PMID: 19740440.
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PubMed Mentions:
23 Fields:
Translation:
AnimalsCells
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Drosophila, a golden bug, for the dissection of the genetic basis of tolerance and susceptibility to hypoxia. Pediatr Res. 2009 Sep; 66(3):239-47.
Zhou D, Visk DW, Haddad GG. PMID: 19542900.
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PubMed Mentions:
9 Fields:
Translation:
HumansAnimalsCells
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Distinct mechanisms underlying tolerance to intermittent and constant hypoxia in Drosophila melanogaster. PLoS One. 2009; 4(4):e5371.
Azad P, Zhou D, Russo E, Haddad GG. PMID: 19401761.
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PubMed Mentions:
32 Fields:
Translation:
AnimalsCells
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DIDS protects against neuronal injury by blocking Toll-like receptor 2 activated-mechanisms. J Neurochem. 2009 Feb; 108(3):835-46.
Yao H, Felfly H, Wang J, Zhou D, Haddad GG. PMID: 19077053.
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PubMed Mentions:
12 Fields:
Translation:
AnimalsCells
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Mechanisms underlying hypoxia tolerance in Drosophila melanogaster: hairy as a metabolic switch. PLoS Genet. 2008 Oct; 4(10):e1000221.
Zhou D, Xue J, Lai JC, Schork NJ, White KP, Haddad GG. PMID: 18927626.
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PubMed Mentions:
58 Fields:
Translation:
AnimalsCells
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Gene expression in mouse brain following chronic hypoxia: role of sarcospan in glial cell death. Physiol Genomics. 2008 Feb 19; 32(3):370-9.
Zhou D, Wang J, Zapala MA, Xue J, Schork NJ, Haddad GG. PMID: 18056785.
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PubMed Mentions:
25 Fields:
Translation:
AnimalsCells
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Modulation of hSlo BK current inactivation by fatty acid esters of CoA. J Neurochem. 2008 Mar; 104(5):1394-403.
Sun X, Yao H, Zhou D, Gu X, Haddad GG. PMID: 18005338.
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PubMed Mentions:
4 Fields:
Translation:
Animals
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The sodium-activated potassium channel Slack is modulated by hypercapnia and acidosis. Neuroscience. 2008 Jan 24; 151(2):410-8.
Ruffin VA, Gu XQ, Zhou D, Douglas RM, Sun X, Trouth CO, Haddad GG. PMID: 18082331.
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PubMed Mentions:
10 Fields:
Translation:
AnimalsCells
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Role of transporters and ion channels in neuronal injury under hypoxia. . 2008 Feb; 294(2):R451-7.
Xue J, Zhou D, Yao H, Haddad GG. PMID: 17977915.
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PubMed Mentions:
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Experimental selection for Drosophila survival in extremely low O(2) environment. PLoS One. 2007 May 30; 2(5):e490.
Zhou D, Xue J, Chen J, Morcillo P, Lambert JD, White KP, Haddad GG. PMID: 17534440.
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PubMed Mentions:
43 Fields:
Translation:
AnimalsCells
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Hypoxia increases BK channel activity in the inner mitochondrial membrane. Biochem Biophys Res Commun. 2007 Jun 22; 358(1):311-6.
Gu XQ, Siemen D, Parvez S, Cheng Y, Xue J, Zhou D, Sun X, Jonas EA, Haddad GG. PMID: 17481584.
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PubMed Mentions:
12 Fields:
Translation:
HumansCells
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Novel functional interaction between Na+/H+ exchanger 1 and tyrosine phosphatase SHP-2. . 2007 Jun; 292(6):R2406-16.
Xue J, Zhou D, Yao H, Gavrialov O, McConnell MJ, Gelb BD, Haddad GG. PMID: 17289818.
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PubMed Mentions:
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Beta-subunit-dependent modulation of hSlo BK current by arachidonic acid. J Neurophysiol. 2007 Jan; 97(1):62-9.
Sun X, Zhou D, Zhang P, Moczydlowski EG, Haddad GG. PMID: 17021030.
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PubMed Mentions:
22 Fields:
Translation:
HumansAnimalsCells
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Effect of carbon dioxide on neonatal mouse lung: a genomic approach. J Appl Physiol (1985). 2006 Dec; 101(6):1556-64.
Li G, Zhou D, Vicencio AG, Ryu J, Xue J, Kanaan A, Gavrialov O, Haddad GG. PMID: 16888043.
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PubMed Mentions:
11 Fields:
Translation:
Animals
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Gene expression and phenotypic characterization of mouse heart after chronic constant or intermittent hypoxia. Physiol Genomics. 2005 Aug 11; 22(3):292-307.
Fan C, Iacobas DA, Zhou D, Chen Q, Lai JK, Gavrialov O, Haddad GG. PMID: 15928208.
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PubMed Mentions:
37 Fields:
Translation:
AnimalsCells
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Na+/H+ exchanger 1 deficiency alters gene expression in mouse brain. Physiol Genomics. 2004 Aug 11; 18(3):331-9.
Zhou D, Xue J, Gavrialov O, Haddad GG. PMID: 15306696.
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PubMed Mentions:
12 Fields:
Translation:
AnimalsCells
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Expression of Na+/H+ and HCO3- -dependent transporters in Na+/H+ exchanger isoform 1 null mutant mouse brain. Neuroscience. 2003; 122(1):37-46.
Xue J, Douglas RM, Zhou D, Lim JY, Boron WF, Haddad GG. PMID: 14596847.
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PubMed Mentions:
9 Fields:
Translation:
Animals
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CB1 cannabinoid receptor-mediated tyrosine phosphorylation of focal adhesion kinase-related non-kinase. FEBS Lett. 2002 Aug 14; 525(1-3):164-8.
Zhou D, Song ZH. PMID: 12163181.
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PubMed Mentions:
7 Fields:
Translation:
AnimalsCells
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Acute disruption of select steroid receptor coactivators prevents reproductive behavior in rats and unmasks genetic adaptation in knockout mice. Mol Endocrinol. 2002 Jul; 16(7):1511-23.
Apostolakis EM, Ramamurphy M, Zhou D, Oñate S, O'Malley BW. PMID: 12089347.
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PubMed Mentions:
35 Fields:
Translation:
AnimalsCells
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CB1 cannabinoid receptor-mediated neurite remodeling in mouse neuroblastoma N1E-115 cells. J Neurosci Res. 2001 Aug 15; 65(4):346-53.
Zhou D, Song ZH. PMID: 11494371.
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PubMed Mentions:
10 Fields:
Translation:
AnimalsCells
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Distribution of D(5) dopamine receptor mRNA in rat ventromedial hypothalamic nucleus. Biochem Biophys Res Commun. 1999 Dec 20; 266(2):556-9.
Zhou D, Apostolakis EM, O'Malley BW. PMID: 10600540.
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PubMed Mentions:
3 Fields:
Translation:
Animals
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Serotonergic hyperinnervation of the frontal cortex in an animal model of depression, the bulbectomized rat. J Neurosci Res. 1998 Oct 01; 54(1):109-16.
Zhou D, Grecksch G, Becker A, Frank C, Pilz J, Huether G. PMID: 9778154.
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PubMed Mentions:
9 Fields:
Translation:
AnimalsCells
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Influence of olfactory bulbectomy and subsequent imipramine treatment on 5-hydroxytryptaminergic presynapses in the rat frontal cortex: behavioural correlates. Br J Pharmacol. 1997 Dec; 122(8):1725-31.
Grecksch G, Zhou D, Franke C, Schröder U, Sabel B, Becker A, Huether G. PMID: 9422820.
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PubMed Mentions:
8 Fields:
Translation:
AnimalsCells
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No evidence for a physiological coupling between melatonin and glucocorticoids. Psychopharmacology (Berl). 1997 Oct; 133(4):313-22.
Hajak G, Rodenbeck A, Ehrenthal HD, Leonard S, Wedekind D, Sengos G, Zhou D, Huether G. PMID: 9372529.
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Long-term food restriction down-regulates the density of serotonin transporters in the rat frontal cortex. Biol Psychiatry. 1997 Jun 15; 41(12):1174-80.
Huether G, Zhou D, Schmidt S, Wiltfang J, Rüther E. PMID: 9171908.
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PubMed Mentions:
14 Fields:
Translation:
AnimalsCells
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Long-term modulation of presynaptic 5-HT-output: experimentally induced changes in cortical 5-HT-transporter density, tryptophan hydroxylase content and 5-HT innervation density. J Neural Transm (Vienna). 1997; 104(10):993-1004.
Huether G, Zhou D, Rüther E. PMID: 9503252.
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PubMed Mentions:
4 Fields:
Translation:
Animals
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Causes and consequences of the loss of serotonergic presynapses elicited by the consumption of 3,4-methylenedioxymethamphetamine (MDMA, "ecstasy") and its congeners. J Neural Transm (Vienna). 1997; 104(8-9):771-94.
Huether G, Zhou D, Rüther E. PMID: 9451711.
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PubMed Mentions:
14 Fields:
Translation:
HumansAnimalsCells
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Serotonin transporters in the rat frontal cortex: lack of circadian rhythmicity but down-regulation by food restriction. J Neurochem. 1996 Aug; 67(2):656-61.
Zhou D, Huether G, Wiltfang J, Hajak G, Rüther E. PMID: 8764592.
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PubMed Mentions:
5 Fields:
Translation:
AnimalsCells
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Rat strain differences in the vulnerability of serotonergic nerve endings to neurotoxic damage by p-chloroamphetamine. J Neural Transm (Vienna). 1996; 103(12):1381-95.
Zhou D, Schreinert M, Pilz J, Huether G. PMID: 9029405.
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PubMed Mentions:
1 Fields:
Translation:
Animals