Padmini Rangamani

Title(s)Professor, Pharmacology
SchoolVc-health Sciences-schools
Address9500 Gilman Drive #
La Jolla CA 92093
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    1. Author Correction: Spatial modeling algorithms for reactions and transport in biological cells. Nat Comput Sci. 2025 Feb 03. Francis EA, Laughlin JG, Dokken JS, Finsberg HNT, Lee CT, Rognes ME, Rangamani P. PMID: 39901055.
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    2. Synaptic cleft geometry modulates NMDAR opening probability by tuning neurotransmitter residence time. Biophys J. 2025 Jan 28. Mesa MH, McCabe K, Rangamani P. PMID: 39876560.
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    3. Coupling between membrane undulations and lipid curvature leads to transient local enrichment of cardiolipin in mitochondrial membranes. bioRxiv. 2025 Jan 22. Lee CT, Venkatraman K, Budin I, Rangamani P. PMID: 39896542; PMCID: PMC11785088.
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    4. Dynamic mechanisms for membrane skeleton transitions. J Cell Sci. 2025 Jan 22. Bonilla-Quintana M, Ghisleni A, Gauthier NC, Rangamani P. PMID: 39838899.
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    5. A spatial model of autophosphorylation of Ca 2+ /calmodulin-dependent protein kinase II (CaMKII) predicts that the lifetime of phospho-CaMKII after induction of synaptic plasticity is greatly prolonged by CaM-trapping. bioRxiv. 2024 Dec 20. Bartol TM, Ordyan M, Sejnowski TJ, Rangamani P, Kennedy MB. PMID: 38352446; PMCID: PMC10862815.
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    6. Spatial modeling algorithms for reactions and transport in biological cells. Nat Comput Sci. 2024 Dec 19. Francis EA, Laughlin JG, Dokken JS, Finsberg HNT, Lee CT, Rognes ME, Rangamani P. PMID: 39702839.
      View in: PubMed   Mentions:    Fields:    
    7. Membrane mechanics dictate axonal pearls-on-a-string morphology and function. Nat Neurosci. 2025 Jan; 28(1):49-61. Griswold JM, Bonilla-Quintana M, Pepper R, Lee CT, Raychaudhuri S, Ma S, Gan Q, Syed S, Zhu C, Bell M, Suga M, Yamaguchi Y, Chéreau R, Nägerl UV, Knott G, Rangamani P, Watanabe S. PMID: 39623218; PMCID: PMC11706780.
      View in: PubMed   Mentions: 1     Fields:    Translation:AnimalsCells
    8. Glycocalyx-induced formation of membrane tubes. bioRxiv. 2024 Nov 28. Xiao K, Rangamani P. PMID: 39651189; PMCID: PMC11623602.
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    9. Modeling collagen fibril degradation as a function of matrix microarchitecture. Soft Matter. 2024 Nov 27; 20(46):9286-9300. Debnath B, Narasimhan BN, Fraley SI, Rangamani P. PMID: 39552222; PMCID: PMC11652085.
      View in: PubMed   Mentions:    Fields:    Translation:Cells
    10. Spatiotemporal orchestration of calcium-cAMP oscillations on AKAP/AC nanodomains is governed by an incoherent feedforward loop. PLoS Comput Biol. 2024 Oct; 20(10):e1012564. Qiao L, Getz M, Gross B, Gross B, Tenner B, Zhang J, Rangamani P. PMID: 39480900; PMCID: PMC11556706.
      View in: PubMed   Mentions:    Fields:    Translation:HumansAnimalsCells
    11. Biophysical modeling of membrane curvature generation and curvature sensing by the glycocalyx. bioRxiv. 2024 Sep 08. Xiao K, Park S, Stachowiak J, Rangamani P. PMID: 39282261; PMCID: PMC11398454.
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    12. Computational modeling establishes mechanotransduction as a potent modulator of the mammalian circadian clock. J Cell Sci. 2024 Sep 01; 137(17). Francis EA, Rangamani P. PMID: 39140137; PMCID: PMC11423814.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansAnimalsCells
    13. Insights gained from computational modeling of YAP/TAZ signaling for cellular mechanotransduction. NPJ Syst Biol Appl. 2024 Aug 15; 10(1):90. Jafarinia H, Khalilimeybodi A, Barrasa-Fano J, Fraley SI, Rangamani P, Carlier A. PMID: 39147782; PMCID: PMC11327324.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansAnimalsCells
    14. Modeling collagen fibril degradation as a function of matrix microarchitecture. bioRxiv. 2024 Aug 12. Debnath B, Narasimhan BN, Fraley SI, Rangamani P. PMID: 39185199; PMCID: PMC11343160.
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    15. Mechanically induced topological transition of spectrin regulates its distribution in the mammalian cell cortex. Nat Commun. 2024 Jul 08; 15(1):5711. Ghisleni A, Bonilla-Quintana M, Crestani M, Lavagnino Z, Galli C, Rangamani P, Gauthier NC. PMID: 38977673; PMCID: PMC11231315.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansAnimalsCells
    16. Biophysical Modeling of Synaptic Plasticity. Annu Rev Biophys. 2024 Jul; 53(1):397-426. Lee CT, Bell M, Bonilla-Quintana M, Rangamani P. PMID: 38382115.
      View in: PubMed   Mentions:    Fields:    Translation:HumansAnimalsCells
    17. Liquid-like condensates that bind actin drive filament polymerization and bundling. bioRxiv. 2024 May 22. Walker C, Chandrasekaran A, Mansour D, Graham K, Torres A, Wang L, Lafer EM, Rangamani P, Stachowiak JC. PMID: 38826190; PMCID: PMC11142076.
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    18. Dynamic mechanisms for membrane skeleton transitions. bioRxiv. 2024 May 02. Bonilla-Quintana M, Ghisleni A, Gauthier N, Rangamani P. PMID: 38746295; PMCID: PMC11092671.
      View in: PubMed   Mentions:
    19. Membrane curvature catalyzes actin nucleation through nano-scale condensation of N-WASP-FBP17. bioRxiv. 2024 Apr 25. Zhu K, Guo X, Chandrasekaran A, Miao X, Rangamani P, Zhao W, Miao Y. PMID: 38712166; PMCID: PMC11071460.
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    20. Modeling cardiomyocyte signaling and metabolism predicts genotype-to-phenotype mechanisms in hypertrophic cardiomyopathy. Comput Biol Med. 2024 06; 175:108499. Khalilimeybodi A, Saucerman JJ, Rangamani P. PMID: 38677172; PMCID: PMC11175993.
      View in: PubMed   Mentions: 2     Fields:    Translation:HumansAnimalsCells
    21. Network model of skeletal muscle cell signalling predicts differential responses to endurance and resistance exercise training. Exp Physiol. 2024 Jun; 109(6):939-955. Fowler A, Knaus KR, Khuu S, Khalilimeybodi A, Schenk S, Ward SR, Fry AC, Rangamani P, McCulloch AD. PMID: 38643471; PMCID: PMC11140181.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansAnimalsCells
    22. Modeling the mechanochemical feedback for membrane-protein interactions using a continuum mesh model. Methods Enzymol. 2024; 701:387-424. Lee CT, Rangamani P. PMID: 39025577.
      View in: PubMed   Mentions:    Fields:    Translation:Cells
    23. Kinetic trapping organizes actin filaments within liquid-like protein droplets. Nat Commun. 2024 Apr 11; 15(1):3139. Chandrasekaran A, Graham K, Stachowiak JC, Rangamani P. PMID: 38605007; PMCID: PMC11009352.
      View in: PubMed   Mentions: 4     Fields:    Translation:Cells
    24. Particle-based simulations shed light on cytoskeleton-membrane dynamics in phagocytosis. Biophys J. 2024 05 07; 123(9):1031-1033. Francis EA, Rangamani P. PMID: 38549374; PMCID: PMC11079863.
      View in: PubMed   Mentions:    Fields:    Translation:HumansAnimalsCells
    25. Biophysical Modeling of Actin-Mediated Structural Plasticity Reveals Mechanical Adaptation in Dendritic Spines. eNeuro. 2024 Mar; 11(3). Bonilla-Quintana M, Rangamani P. PMID: 38383589; PMCID: PMC10928477.
      View in: PubMed   Mentions: 1     Fields:    Translation:Cells
    26. Divergent iron-regulatory states contribute to heterogeneity in breast cancer aggressiveness. bioRxiv. 2024 Feb 13. Leineweber WD, Rowell MZ, Ranamukhaarachchi S, Walker A, Li Y, Villazon J, Farrera AM, Hu Z, Yang J, Shi L, Fraley SI. PMID: 37425829; PMCID: PMC10327122.
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    27. Liquid-like condensates mediate competition between actin branching and bundling. Proc Natl Acad Sci U S A. 2024 Jan 16; 121(3):e2309152121. Graham K, Chandrasekaran A, Wang L, Yang N, Lafer EM, Rangamani P, Stachowiak JC. PMID: 38207079; PMCID: PMC10801869.
      View in: PubMed   Mentions: 1     Fields:    Translation:Cells
    28. Serine-129 phosphorylation of α-synuclein is an activity-dependent trigger for physiologic protein-protein interactions and synaptic function. Neuron. 2023 Dec 20; 111(24):4006-4023.e10. Parra-Rivas LA, Madhivanan K, Aulston BD, Wang L, Prakashchand DD, Boyer NP, Saia-Cereda VM, Branes-Guerrero K, Pizzo DP, Bagchi P, Sundar VS, Tang Y, Das U, Scott DA, Rangamani P, Ogawa Y. PMID: 38128479; PMCID: PMC10766085.
      View in: PubMed   Mentions: 23     Fields:    Translation:HumansCells
    29. Effective cell membrane tension protects red blood cells against malaria invasion. PLoS Comput Biol. 2023 Dec; 19(12):e1011694. Alimohamadi H, Rangamani P. PMID: 38048346; PMCID: PMC10721198.
      View in: PubMed   Mentions: 3     Fields:    Translation:HumansAnimalsCells
    30. Cristae formation is a mechanical buckling event controlled by the inner mitochondrial membrane lipidome. EMBO J. 2023 Dec 11; 42(24):e114054. Venkatraman K, Lee CT, Garcia GC, Mahapatra A, Milshteyn D, Perkins G, Kim KY, Pasolli HA, Phan S, Lippincott-Schwartz J, Ellisman MH, Rangamani P, Budin I. PMID: 37933600; PMCID: PMC10711667.
      View in: PubMed   Mentions: 7     Fields:    
    31. Spine apparatus modulates Ca 2+ in spines through spatial localization of sources and sinks. bioRxiv. 2023 Sep 22. Mesa MH, Garcia GC, Hoerndli FJ, McCabe KJ, Rangamani P. PMID: 37790389; PMCID: PMC10542496.
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    32. ActuAtor, a Listeria-inspired molecular tool for physical manipulation of intracellular organizations through de novo actin polymerization. Cell Rep. 2023 10 31; 42(10):113089. Nakamura H, Rho E, Lee CT, Itoh K, Deng D, Watanabe S, Razavi S, Matsubayashi HT, Zhu C, Jung E, Rangamani P, Watanabe S, Inoue T. PMID: 37734382; PMCID: PMC10872831.
      View in: PubMed   Mentions: 2     Fields:    Translation:Cells
    33. Cristae formation is a mechanical buckling event controlled by the inner membrane lipidome. bioRxiv. 2023 Sep 02. Venkatraman K, Lee CT, Garcia GC, Mahapatra A, Milshteyn D, Perkins G, Kim KY, Pasolli HA, Phan S, Lippincott-Schwartz J, Ellisman MH, Rangamani P, Budin I. PMID: 36993370; PMCID: PMC10054968.
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    34. Mitochondrial morphology governs ATP production rate. J Gen Physiol. 2023 09 04; 155(9). Garcia GC, Gupta K, Bartol TM, Sejnowski TJ, Rangamani P. PMID: 37615622; PMCID: PMC10450615.
      View in: PubMed   Mentions: 3     Fields:    Translation:Cells
    35. Membrane mechanics dictate axonal morphology and function. bioRxiv. 2023 Jul 21. Griswold JM, Bonilla-Quintana M, Pepper R, Lee CT, Raychaudhuri S, Ma S, Gan Q, Syed S, Zhu C, Bell M, Suga M, Yamaguchi Y, Chéreau R, Nägerl UV, Knott G, Rangamani P, Watanabe S. PMID: 37503105; PMCID: PMC10370128.
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    36. Computational modeling of AMPK and mTOR crosstalk in glutamatergic synapse calcium signaling. NPJ Syst Biol Appl. 2023 07 17; 9(1):34. Leung A, Rangamani P. PMID: 37460570; PMCID: PMC10352260.
      View in: PubMed   Mentions: 2     Fields:    Translation:HumansCells
    37. The ins and outs of membrane bending by intrinsically disordered proteins. Sci Adv. 2023 07 07; 9(27):eadg3485. Yuan F, Lee CT, Sangani A, Houser JR, Wang L, Lafer EM, Rangamani P, Stachowiak JC. PMID: 37418523; PMCID: PMC10328403.
      View in: PubMed   Mentions: 9     Fields:    
    38. Liquid-like condensates mediate competition between actin branching and bundling. bioRxiv. 2023 Jun 26. Graham K, Chandrasekaran A, Wang L, Yang N, Lafer EM, Rangamani P, Stachowiak JC. PMID: 37425724; PMCID: PMC10327076.
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    39. Formation of protein-mediated bilayer tubes is governed by a snapthrough transition. Soft Matter. 2023 Jun 14; 19(23):4345-4359. Mahapatra A, Rangamani P. PMID: 37255421; PMCID: PMC10330560.
      View in: PubMed   Mentions: 3     Fields:    Translation:Cells
    40. Correction: Bayesian parameter estimation for dynamical models in systems biology. PLoS Comput Biol. 2023 Apr; 19(4):e1011041. Linden NJ, Kramer B, Rangamani P. PMID: 37018170; PMCID: PMC10075423.
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    41. A circuit for secretion-coupled cellular autonomy in multicellular eukaryotic cells. Mol Syst Biol. 2023 04 12; 19(4):e11127. Qiao L, Sinha S, Abd El-Hafeez AA, Lo IC, Midde KK, Ngo T, Aznar N, Lopez-Sanchez I, Gupta V, Farquhar MG, Rangamani P, Ghosh P. PMID: 36856068; PMCID: PMC10090951.
      View in: PubMed   Mentions: 6     Fields:    Translation:Cells
    42. Design principles of improving the dose-response alignment in coupled GTPase switches. NPJ Syst Biol Appl. 2023 01 31; 9(1):3. Qiao L, Ghosh P, Rangamani P. PMID: 36720885; PMCID: PMC9889403.
      View in: PubMed   Mentions: 2     Fields:    Translation:Cells
    43. Liquid-like VASP condensates drive actin polymerization and dynamic bundling. Nat Phys. 2023 Apr; 19(4):574-585. Graham K, Chandrasekaran A, Wang L, Ladak A, Lafer EM, Rangamani P, Stachowiak JC. PMID: 38405682; PMCID: PMC10887402.
      View in: PubMed   Mentions: 13  
    44. Crosstalk between biochemical signalling network architecture and trafficking governs AMPAR dynamics in synaptic plasticity. J Physiol. 2023 08; 601(15):3377-3402. Bell MK, Rangamani P. PMID: 36620889.
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    45. Mechanisms underlying divergent relationships between Ca2+ and YAP/TAZ signalling. J Physiol. 2023 02; 601(3):483-515. Khalilimeybodi A, Fraley SI, Rangamani P. PMID: 36463416; PMCID: PMC10986318.
      View in: PubMed   Mentions: 3     Fields:    Translation:Cells
    46. Electrical signals in the ER are cell type and stimulus specific with extreme spatial compartmentalization in neurons. Cell Rep. 2023 01 31; 42(1):111943. Campbell EP, Abushawish AA, Valdez LA, Bell MK, Haryono M, Rangamani P, Bloodgood BL. PMID: 36640310; PMCID: PMC10033362.
      View in: PubMed   Mentions: 3     Fields:    Translation:HumansAnimalsCells
    47. Mechanically induced topological transition of spectrin regulates its distribution in the mammalian cortex. bioRxiv. 2023 Jan 02. Ghisleni A, Bonilla-Quintana M, Crestani M, Fukuzawa A, Rangamani P, Gauthier N. PMID: 36712133; PMCID: PMC9881866.
      View in: PubMed   Mentions:
    48. Spatiotemporal modelling reveals geometric dependence of AMPAR dynamics on dendritic spine morphology. J Physiol. 2023 08; 601(15):3329-3350. Bell MK, Lee CT, Rangamani P. PMID: 36326020.
      View in: PubMed   Mentions: 3     Fields:    Translation:Cells
    49. Bayesian parameter estimation for dynamical models in systems biology. PLoS Comput Biol. 2022 10; 18(10):e1010651. Linden NJ, Kramer B, Rangamani P. PMID: 36269772; PMCID: PMC9629650.
      View in: PubMed   Mentions: 17     Fields:    Translation:Cells
    50. Modelling membrane curvature generation using mechanics and machine learning. J R Soc Interface. 2022 09; 19(194):20220448. Malingen SA, Rangamani P. PMID: 36128706; PMCID: PMC9490339.
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    51. Dendritic spine morphology regulates calcium-dependent synaptic weight change. J Gen Physiol. 2022 08 01; 154(8). Bell MK, Holst MV, Lee CT, Rangamani P. PMID: 35819365; PMCID: PMC9280073.
      View in: PubMed   Mentions: 5     Fields:    Translation:Cells
    52. Mem3DG: Modeling membrane mechanochemical dynamics in 3D using discrete differential geometry. Biophys Rep (N Y). 2022 Sep 14; 2(3). Zhu C, Lee CT, Rangamani P. PMID: 36157269; PMCID: PMC9495267.
      View in: PubMed   Mentions: 8  
    53. Can biophysical models of dendritic spines be used to explore synaptic changes associated with addiction? Phys Biol. 2022 06 14; 19(4). Bonilla-Quintana M, Rangamani P. PMID: 35508164.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansCells
    54. Nanoscale organization of ryanodine receptor distribution and phosphorylation pattern determines the dynamics of calcium sparks. PLoS Comput Biol. 2022 06; 18(6):e1010126. Hernández Mesa M, van den Brink J, Louch WE, McCabe KJ, Rangamani P. PMID: 35666763; PMCID: PMC9203011.
      View in: PubMed   Mentions: 4     Fields:    Translation:HumansCells
    55. Mechanistic insights into actin force generation during vesicle formation from cryo-electron tomography. Dev Cell. 2022 05 09; 57(9):1132-1145.e5. Serwas D, Akamatsu M, Moayed A, Vegesna K, Vasan R, Hill JM, Schöneberg J, Davies KM, Rangamani P, Drubin DG. PMID: 35504288; PMCID: PMC9165722.
      View in: PubMed   Mentions: 19     Fields:    Translation:HumansCells
    56. The many faces of membrane tension: Challenges across systems and scales. Biochim Biophys Acta Biomembr. 2022 07 01; 1864(7):183897. Rangamani P. PMID: 35231438.
      View in: PubMed   Mentions: 11     Fields:    Translation:Cells
    57. Nanoscale dynamics of actin filaments in the red blood cell membrane skeleton. Mol Biol Cell. 2022 03 01; 33(3):ar28. Nowak RB, Alimohamadi H, Pestonjamasp K, Rangamani P, Fowler VM. PMID: 35020457; PMCID: PMC9250383.
      View in: PubMed   Mentions: 8     Fields:    Translation:Cells
    58. Iterative community-driven development of a SARS-CoV-2 tissue simulator. bioRxiv. 2021 Nov 10. Getz M, Wang Y, An G, Asthana M, Becker A, Cockrell C, Collier N, Craig M, Davis CL, Faeder JR, Ford Versypt AN, Mapder T, Gianlupi JF, Glazier JA, Hamis S, Heiland R, Hillen T, Hou D, Islam MA, Jenner AL, Kurtoglu F, Larkin CI, Liu B, Macfarlane F, Maygrundter P, Morel PA, Narayanan A, Ozik J, Pienaar E, Rangamani P, Saglam AS, Shoemaker JE, Smith AM, Weaver JJA, Macklin P. PMID: 32511322; PMCID: PMC7239052.
      View in: PubMed   Mentions: 2  
    59. Biomembranes undergo complex, non-axisymmetric deformations governed by Kirchhoff-Love kinematicsand revealed by a three-dimensional computational framework. Proc Math Phys Eng Sci. 2021 Nov; 477(2255):20210246. Auddya D, Zhang X, Gulati R, Vasan R, Garikipati K, Rangamani P, Rudraraju S. PMID: 35153593; PMCID: PMC8580429.
      View in: PubMed   Mentions: 5  
    60. Morphological principles of neuronal mitochondria. J Comp Neurol. 2022 04; 530(6):886-902. Mendelsohn R, Garcia GC, Bartol TM, Lee CT, Khandelwal P, Liu E, Spencer DJ, Husar A, Bushong EA, Phan S, Perkins G, Ellisman MH, Skupin A, Sejnowski TJ, Rangamani P. PMID: 34608995; PMCID: PMC8831469.
      View in: PubMed   Mentions: 9     Fields:    Translation:AnimalsCells
    61. Curvature-driven feedback on aggregation-diffusion of proteins in lipid bilayers. Soft Matter. 2021 Sep 22; 17(36):8373-8386. Mahapatra A, Saintillan D, Rangamani P. PMID: 34550131; PMCID: PMC8462121.
      View in: PubMed   Mentions: 4     Fields:    Translation:Cells
    62. Mechanical Principles Governing the Shapes of Dendritic Spines. Front Physiol. 2021; 12:657074. Alimohamadi H, Bell MK, Halpain S, Rangamani P. PMID: 34220531; PMCID: PMC8242199.
      View in: PubMed   Mentions: 13  
    63. Systems modeling predicts that mitochondria ER contact sites regulate the postsynaptic energy landscape. NPJ Syst Biol Appl. 2021 06 02; 7(1):26. Leung A, Ohadi D, Pekkurnaz G, Rangamani P. PMID: 34078916; PMCID: PMC8172538.
      View in: PubMed   Mentions: 11     Fields:    Translation:Cells
    64. A spatial model of YAP/TAZ signaling reveals how stiffness, dimensionality, and shape contribute to emergent outcomes. Proc Natl Acad Sci U S A. 2021 05 18; 118(20). Scott KE, Fraley SI, Rangamani P. PMID: 33990464; PMCID: PMC8157940.
      View in: PubMed   Mentions: 55     Fields:    Translation:HumansCells
    65. Membrane bending by protein phase separation. Proc Natl Acad Sci U S A. 2021 03 16; 118(11). Yuan F, Alimohamadi H, Bakka B, Trementozzi AN, Day KJ, Fawzi NL, Rangamani P, Stachowiak JC. PMID: 33688043; PMCID: PMC7980387.
      View in: PubMed   Mentions: 76     Fields:    Translation:HumansCells
    66. Value of models for membrane budding. Curr Opin Cell Biol. 2021 08; 71:38-45. Lee CT, Akamatsu M, Rangamani P. PMID: 33706232; PMCID: PMC8328869.
      View in: PubMed   Mentions: 2     Fields:    Translation:Cells
    67. Stability Analysis of a Signaling Circuit with Dual Species of GTPase Switches. Bull Math Biol. 2021 02 20; 83(4):34. Stolerman LM, Ghosh P, Rangamani P. PMID: 33609194; PMCID: PMC8378325.
      View in: PubMed   Mentions: 2     Fields:    Translation:AnimalsCells
    68. Computational modeling approaches to cAMP/PKA signaling in cardiomyocytes. J Mol Cell Cardiol. 2021 05; 154:32-40. McCabe KJ, Rangamani P. PMID: 33548239.
      View in: PubMed   Mentions: 6     Fields:    Translation:HumansAnimalsCells
    69. Fund Black scientists. Cell. 2021 02 04; 184(3):561-565. Stevens KR, Masters KS, Imoukhuede PI, Haynes KA, Setton LA, Cosgriff-Hernandez E, Lediju Bell MA, Rangamani P, Sakiyama-Elbert SE, Finley SD, Willits RK, Koppes AN, Chesler NC, Christman KL, Allen JB, Wong JY, El-Samad H, Desai TA, Eniola-Adefeso O. PMID: 33503447.
      View in: PubMed   Mentions: 56     Fields:    Translation:Humans
    70. The Mechanics and Thermodynamics of Tubule Formation in Biological Membranes. J Membr Biol. 2021 06; 254(3):273-291. Mahapatra A, Uysalel C, Rangamani P. PMID: 33462667; PMCID: PMC8184589.
      View in: PubMed   Mentions: 10     Fields:    Translation:Cells
    71. Spatially compartmentalized phase regulation of a Ca2+-cAMP-PKA oscillatory circuit. Elife. 2020 11 17; 9. Tenner B, Getz M, Ross B, Ohadi D, Bohrer CH, Greenwald E, Mehta S, Xiao J, Rangamani P, Zhang J. PMID: 33201801; PMCID: PMC7671691.
      View in: PubMed   Mentions: 23     Fields:    Translation:AnimalsCells
    72. ATP synthase: Evolution, energetics, and membrane interactions. J Gen Physiol. 2020 11 02; 152(11). Nirody JA, Budin I, Rangamani P. PMID: 32966553; PMCID: PMC7594442.
      View in: PubMed   Mentions: 25     Fields:    Translation:HumansAnimalsCells
    73. Diffuso-kinetic membrane budding dynamics. Soft Matter. 2020 Dec 28; 16(48):10889-10899. Rojas Molina R, Liese S, Alimohamadi H, Rangamani P, Carlson A. PMID: 33125025.
      View in: PubMed   Mentions: 4     Fields:    Translation:Cells
    74. Ten simple rules for women principal investigators during a pandemic. PLoS Comput Biol. 2020 10; 16(10):e1008370. Kreeger PK, Brock A, Gibbs HC, Grande-Allen KJ, Huang AH, Masters KS, Rangamani P, Reagan MR, Servoss SL. PMID: 33119585; PMCID: PMC7595267.
      View in: PubMed   Mentions: 5     Fields:    Translation:HumansCellsPHPublic Health
    75. Cell shape regulates subcellular organelle location to control early Ca2+ signal dynamics in vascular smooth muscle cells. Sci Rep. 2020 10 20; 10(1):17866. Calizo RC, Bell MK, Ron A, Hu M, Bhattacharya S, Wong NJ, Janssen WGM, Perumal G, Pederson P, Scarlata S, Hone J, Azeloglu EU, Rangamani P, Iyengar R. PMID: 33082406; PMCID: PMC7576209.
      View in: PubMed   Mentions: 16     Fields:    Translation:AnimalsCells
    76. Phase Separation of a PKA Regulatory Subunit Controls cAMP Compartmentation and Oncogenic Signaling. Cell. 2020 09 17; 182(6):1531-1544.e15. Zhang JZ, Lu TW, Stolerman LM, Tenner B, Yang JR, Zhang JF, Falcke M, Rangamani P, Taylor SS, Mehta S, Zhang J. PMID: 32846158; PMCID: PMC7502557.
      View in: PubMed   Mentions: 126     Fields:    Translation:HumansAnimalsCells
    77. Interactions between calmodulin and neurogranin govern the dynamics of CaMKII as a leaky integrator. PLoS Comput Biol. 2020 07; 16(7):e1008015. Ordyan M, Bartol T, Kennedy M, Rangamani P, Sejnowski T. PMID: 32678848; PMCID: PMC7390456.
      View in: PubMed   Mentions: 7     Fields:    Translation:AnimalsCells
    78. Non-uniform distribution of myosin-mediated forces governs red blood cell membrane curvature through tension modulation. PLoS Comput Biol. 2020 05; 16(5):e1007890. Alimohamadi H, Smith AS, Nowak RB, Fowler VM, Rangamani P. PMID: 32453720; PMCID: PMC7274484.
      View in: PubMed   Mentions: 17     Fields:    Translation:HumansCells
    79. Regulating cellular cyclic adenosine monophosphate: "Sources," "sinks," and now, "tunable valves". Wiley Interdiscip Rev Syst Biol Med. 2020 09; 12(5):e1490. Getz M, Rangamani P, Ghosh P. PMID: 32323924; PMCID: PMC7581534.
      View in: PubMed   Mentions: 5     Fields:    Translation:HumansCells
    80. 3D mesh processing using GAMer 2 to enable reaction-diffusion simulations in realistic cellular geometries. PLoS Comput Biol. 2020 04; 16(4):e1007756. Lee CT, Laughlin JG, Angliviel de La Beaumelle N, Amaro RE, McCammon JA, Ramamoorthi R, Holst M, Rangamani P. PMID: 32251448; PMCID: PMC7162555.
      View in: PubMed   Mentions: 17     Fields:    Translation:HumansCells
    81. Modeling membrane nanotube morphology: the role of heterogeneity in composition and material properties. Sci Rep. 2020 02 13; 10(1):2527. Alimohamadi H, Ovryn B, Rangamani P. PMID: 32054874; PMCID: PMC7018976.
      View in: PubMed   Mentions: 9     Fields:    Translation:HumansAnimalsCells
    82. Transient domains of ordered water induced by divalent ions lead to lipid membrane curvature fluctuations. Commun Chem. 2020 Feb 07; 3(1):17. Tarun OB, Okur HI, Rangamani P, Roke S. PMID: 36703372; PMCID: PMC9814626.
      View in: PubMed   Mentions: 9  
    83. Stability Analysis of a Bulk-Surface Reaction Model for Membrane Protein Clustering. Bull Math Biol. 2020 02 06; 82(2):30. Stolerman LM, Getz M, Smith SGL, Holst M, Rangamani P. PMID: 32025918.
      View in: PubMed   Mentions: 2     Fields:    Translation:HumansCells
    84. An Open-Source Mesh Generation Platform for Biophysical Modeling Using Realistic Cellular Geometries. Biophys J. 2020 03 10; 118(5):1003-1008. Lee CT, Laughlin JG, Moody JB, Amaro RE, McCammon JA, Holst M, Rangamani P. PMID: 32032503; PMCID: PMC7063475.
      View in: PubMed   Mentions: 9     Fields:    
    85. A mechanical model reveals that non-axisymmetric buckling lowers the energy barrier associated with membrane neck constriction. Soft Matter. 2020 Jan 22; 16(3):784-797. Vasan R, Rudraraju S, Akamatsu M, Garikipati K, Rangamani P. PMID: 31830191.
      View in: PubMed   Mentions: 19     Fields:    
    86. Applications and Challenges of Machine Learning to Enable Realistic Cellular Simulations. Front Phys. 2020 Jan; 7. Vasan R, Rowan MP, Lee CT, Johnson GR, Rangamani P, Holst M. PMID: 36188416; PMCID: PMC9521042.
      View in: PubMed   Mentions: 3  
    87. Principles of self-organization and load adaptation by the actin cytoskeleton during clathrin-mediated endocytosis. Elife. 2020 01 17; 9. Akamatsu M, Vasan R, Serwas D, Ferrin MA, Rangamani P, Drubin DG. PMID: 31951196; PMCID: PMC7041948.
      View in: PubMed   Mentions: 68     Fields:    Translation:HumansCells
    88. Gαq-mediated calcium dynamics and membrane tension modulate neurite plasticity. Mol Biol Cell. 2020 03 19; 31(7):683-694. Pearce KM, Bell M, Linthicum WH, Wen Q, Srinivasan J, Rangamani P, Scarlata S. PMID: 31825720; PMCID: PMC7202066.
      View in: PubMed   Mentions: 4     Fields:    Translation:AnimalsCells
    89. Geometric Control of Frequency Modulation of cAMP Oscillations due to Calcium in Dendritic Spines. Biophys J. 2019 11 19; 117(10):1981-1994. Ohadi D, Rangamani P. PMID: 31668747; PMCID: PMC7018999.
      View in: PubMed   Mentions: 17     Fields:    Translation:AnimalsCells
    90. Computational Modeling Reveals Frequency Modulation of Calcium-cAMP/PKA Pathway in Dendritic Spines. Biophys J. 2019 11 19; 117(10):1963-1980. Ohadi D, Schmitt DL, Calabrese B, Halpain S, Zhang J, Rangamani P. PMID: 31668749; PMCID: PMC7031750.
      View in: PubMed   Mentions: 20     Fields:    Translation:AnimalsCells
    91. DLITE Uses Cell-Cell Interface Movement to Better Infer Cell-Cell Tensions. Biophys J. 2019 11 05; 117(9):1714-1727. Vasan R, Maleckar MM, Williams CD, Rangamani P. PMID: 31648791; PMCID: PMC6838938.
      View in: PubMed   Mentions: 4     Fields:    Translation:HumansCells
    92. Geometric coupling of helicoidal ramps and curvature-inducing proteins in organelle membranes. J R Soc Interface. 2019 09 27; 16(158):20190354. Chabanon M, Rangamani P. PMID: 31480932; PMCID: PMC6769308.
      View in: PubMed   Mentions: 1     Fields:    Translation:Cells
    93. Geometric principles of second messenger dynamics in dendritic spines. Sci Rep. 2019 08 12; 9(1):11676. Cugno A, Bartol TM, Sejnowski TJ, Iyengar R, Rangamani P. PMID: 31406140; PMCID: PMC6691135.
      View in: PubMed   Mentions: 20     Fields:    Translation:HumansAnimalsCells
    94. Addendum: Dendritic spine geometry and spine apparatus organization govern the spatiotemporal dynamics of calcium. J Gen Physiol. 2019 Sep 02; 151(9):2221-2222. Bell M, Bartol T, Sejnowski T, Rangamani P. PMID: 31375548; PMCID: PMC6719410.
      View in: PubMed   Mentions: 2     Fields:    
    95. Biophysics at the coffee shop: lessons learned working with George Oster. Mol Biol Cell. 2019 07 22; 30(16):1882-1889. Igoshin OA, Chen J, Xing J, Liu J, Elston TC, Grabe M, Kim KS, Nirody JA, Rangamani P, Sun SX, Wang H, Wolgemuth C. PMID: 31322997; PMCID: PMC6727762.
      View in: PubMed   Mentions: 3     Fields:    Translation:HumansAnimals
    96. Dendritic spine geometry and spine apparatus organization govern the spatiotemporal dynamics of calcium. J Gen Physiol. 2019 08 05; 151(8):1017-1034. Bell M, Bartol T, Sejnowski T, Rangamani P. PMID: 31324651; PMCID: PMC6683673.
      View in: PubMed   Mentions: 40     Fields:    Translation:AnimalsCells
    97. Emerging themes and unifying concepts underlying cell behavior regulation by the pericellular space. Acta Biomater. 2019 09 15; 96:81-98. Scott KE, Rychel K, Ranamukhaarachchi S, Rangamani P, Fraley SI. PMID: 31176842.
      View in: PubMed   Mentions: 9     Fields:    Translation:HumansAnimalsCells
    98. A predictive computational model reveals that GIV/girdin serves as a tunable valve for EGFR-stimulated cyclic AMP signals. Mol Biol Cell. 2019 06 15; 30(13):1621-1633. Getz M, Swanson L, Sahoo D, Ghosh P, Rangamani P. PMID: 31017840; PMCID: PMC6727633.
      View in: PubMed   Mentions: 9     Fields:    Translation:HumansCells
    99. Lipid Unsaturation Properties Govern the Sensitivity of Membranes to Photoinduced Oxidative Stress. Biophys J. 2019 03 05; 116(5):910-920. Bour A, Kruglik SG, Chabanon M, Rangamani P, Puff N, Bonneau S. PMID: 30777304; PMCID: PMC6401011.
      View in: PubMed   Mentions: 16     Fields:    Translation:Cells
    100. Modeling Membrane Curvature Generation due to Membrane⁻Protein Interactions. Biomolecules. 2018 10 23; 8(4). Alimohamadi H, Rangamani P. PMID: 30360496; PMCID: PMC6316661.
      View in: PubMed   Mentions: 27     Fields:    Translation:Cells
    101. The role of traction in membrane curvature generation. Mol Biol Cell. 2018 08 08; 29(16):2024-2035. Alimohamadi H, Vasan R, Hassinger JE, Stachowiak JC, Rangamani P. PMID: 30044708; PMCID: PMC6232966.
      View in: PubMed   Mentions: 20     Fields:    Translation:Cells
    102. Solubilization kinetics determines the pulsatory dynamics of lipid vesicles exposed to surfactant. Biochim Biophys Acta Biomembr. 2018 10; 1860(10):2032-2041. Chabanon M, Rangamani P. PMID: 29572034.
      View in: PubMed   Mentions: 4     Fields:    
    103. Gaussian curvature directs the distribution of spontaneous curvature on bilayer membrane necks. Soft Matter. 2018 Mar 28; 14(12):2281-2294. Chabanon M, Rangamani P. PMID: 29513328.
      View in: PubMed   Mentions: 11     Fields:    
    104. Pulsatile Gating of Giant Vesicles Containing Macromolecular Crowding Agents Induced by Colligative Nonideality. J Am Chem Soc. 2018 01 17; 140(2):691-699. Su WC, Gettel DL, Chabanon M, Rangamani P, Parikh AN. PMID: 29303581.
      View in: PubMed   Mentions: 15     Fields:    
    105. Stability analysis in spatial modeling of cell signaling. Wiley Interdiscip Rev Syst Biol Med. 2018 01; 10(1). Getz MC, Nirody JA, Rangamani P. PMID: 28787545.
      View in: PubMed   Mentions: 2     Fields:    Translation:HumansCells
    106. Systems biology of cellular membranes: a convergence with biophysics. Wiley Interdiscip Rev Syst Biol Med. 2017 09; 9(5). Chabanon M, Stachowiak JC, Rangamani P. PMID: 28475297; PMCID: PMC5561455.
      View in: PubMed   Mentions: 14     Fields:    Translation:HumansAnimalsCells
    107. Pulsatile Lipid Vesicles under Osmotic Stress. Biophys J. 2017 Apr 25; 112(8):1682-1691. Chabanon M, Ho JCS, Liedberg B, Parikh AN, Rangamani P. PMID: 28445759; PMCID: PMC5406380.
      View in: PubMed   Mentions: 24     Fields:    Translation:Cells
    108. Membrane fission by protein crowding. Proc Natl Acad Sci U S A. 2017 04 18; 114(16):E3258-E3267. Snead WT, Hayden CC, Gadok AK, Zhao C, Lafer EM, Rangamani P, Stachowiak JC. PMID: 28373566; PMCID: PMC5402459.
      View in: PubMed   Mentions: 78     Fields:    Translation:AnimalsCells
    109. The GAPs, GEFs, GDIs and…now, GEMs: New kids on the heterotrimeric G protein signaling block. Cell Cycle. 2017 Apr 03; 16(7):607-612. Ghosh P, Rangamani P, Kufareva I. PMID: 28287365; PMCID: PMC5397260.
      View in: PubMed   Mentions: 26     Fields:    Translation:HumansAnimalsCells
    110. Spontaneous formation of nanometer scale tubular vesicles in aqueous mixtures of lipid and block copolymer amphiphiles. Soft Matter. 2017 Feb 08; 13(6):1107-1115. Lim SK, Wong AS, de Hoog HM, Rangamani P, Parikh AN, Nallani M, Sandin S, Liedberg B. PMID: 28058411.
      View in: PubMed   Mentions: 8     Fields:    
    111. Design principles for robust vesiculation in clathrin-mediated endocytosis. Proc Natl Acad Sci U S A. 2017 02 14; 114(7):E1118-E1127. Hassinger JE, Oster G, Drubin DG, Rangamani P. PMID: 28126722; PMCID: PMC5320970.
      View in: PubMed   Mentions: 74     Fields:    Translation:Cells
    112. Paradoxical signaling regulates structural plasticity in dendritic spines. Proc Natl Acad Sci U S A. 2016 09 06; 113(36):E5298-307. Rangamani P, Levy MG, Khan S, Oster G. PMID: 27551076; PMCID: PMC5018790.
      View in: PubMed   Mentions: 30     Fields:    Translation:HumansAnimalsCells
    113. Shear-Induced Nitric Oxide Production by Endothelial Cells. Biophys J. 2016 Jul 12; 111(1):208-21. Sriram K, Laughlin JG, Rangamani P, Tartakovsky DM. PMID: 27410748; PMCID: PMC4944664.
      View in: PubMed   Mentions: 53     Fields:    Translation:Cells
    114. Mixing Water, Transducing Energy, and Shaping Membranes: Autonomously Self-Regulating Giant Vesicles. Langmuir. 2016 Mar 08; 32(9):2151-63. Ho JC, Rangamani P, Liedberg B, Parikh AN. PMID: 26866787.
      View in: PubMed   Mentions: 20     Fields:    
    115. The plasma membrane as a capacitor for energy and metabolism. Am J Physiol Cell Physiol. 2016 Feb 01; 310(3):C181-92. Ray S, Kassan A, Busija AR, Rangamani P, Patel HH. PMID: 26771520; PMCID: PMC4888523.
      View in: PubMed   Mentions: 24     Fields:    Translation:HumansAnimalsCells
    116. Variable tilt on lipid membranes. Proc Math Phys Eng Sci. 2014 Dec 08; 470(2172):20140463. Rangamani P, Steigmann DJ. PMID: 25484606; PMCID: PMC4241011.
      View in: PubMed   Mentions: 6  
    117. Dual biochemical oscillators may control cellular reversals in Myxococcus xanthus. Biophys J. 2014 Dec 02; 107(11):2700-11. Eckhert E, Rangamani P, Davis AE, Oster G, Berleman JE. PMID: 25468349; PMCID: PMC4255590.
      View in: PubMed   Mentions: 3     Fields:    Translation:Cells
    118. Oscillatory phase separation in giant lipid vesicles induced by transmembrane osmotic differentials. Elife. 2014 Oct 15; 3:e03695. Oglecka K, Rangamani P, Liedberg B, Kraut RS, Parikh AN. PMID: 25318069; PMCID: PMC4197780.
      View in: PubMed   Mentions: 48     Fields:    Translation:AnimalsCells
    119. Protein-induced membrane curvature alters local membrane tension. Biophys J. 2014 Aug 05; 107(3):751-762. Rangamani P, Mandadap KK, Oster G. PMID: 25099814; PMCID: PMC4129491.
      View in: PubMed   Mentions: 46     Fields:    Translation:Cells
    120. Multiscale modeling of cell shape from the actin cytoskeleton. Prog Mol Biol Transl Sci. 2014; 123:143-67. Rangamani P, Xiong GY, Iyengar R. PMID: 24560144; PMCID: PMC4966540.
      View in: PubMed   Mentions: 5     Fields:    Translation:HumansAnimalsCells
    121. Small scale membrane mechanics. Biomech Model Mechanobiol. 2014 Aug; 13(4):697-711. Rangamani P, Benjamini A, Agrawal A, Smit B, Steigmann DJ, Oster G. PMID: 24081650; PMCID: PMC4026334.
      View in: PubMed   Mentions: 12     Fields:    Translation:Cells
    122. Decoding information in cell shape. Cell. 2013 Sep 12; 154(6):1356-69. Rangamani P, Lipshtat A, Azeloglu EU, Calizo RC, Hu M, Ghassemi S, Hone J, Scarlata S, Neves SR, Iyengar R. PMID: 24034255; PMCID: PMC3874130.
      View in: PubMed   Mentions: 87     Fields:    Translation:HumansAnimalsCells
    123. Lipid tubule growth by osmotic pressure. J R Soc Interface. 2013 Nov 06; 10(88):20130637. Rangamani P, Zhang D, Oster G, Shen AQ. PMID: 24004559; PMCID: PMC3785832.
      View in: PubMed   Mentions: 4     Fields:    
    124. Interaction between surface shape and intra-surface viscous flow on lipid membranes. Biomech Model Mechanobiol. 2013 Aug; 12(4):833-45. Rangamani P, Agrawal A, Mandadapu KK, Oster G, Steigmann DJ. PMID: 23086137; PMCID: PMC4026288.
      View in: PubMed   Mentions: 21     Fields:    
    125. Signaling network triggers and membrane physical properties control the actin cytoskeleton-driven isotropic phase of cell spreading. Biophys J. 2011 Feb 16; 100(4):845-57. Rangamani P, Fardin MA, Xiong Y, Lipshtat A, Rossier O, Sheetz MP, Iyengar R. PMID: 21320428; PMCID: PMC3037558.
      View in: PubMed   Mentions: 20     Fields:    Translation:AnimalsCells
    126. Cell spreading as a hydrodynamic process. Soft Matter. 2010 Aug 10; 6:4788-4799. Fardin MA, Rossier OM, Rangamani P, Avigan PD, Gauthier NC, Vonnegut W, Mathur A, Hone J, Iyengar R, Sheetz MP. PMID: 23908673; PMCID: PMC3728004.
      View in: PubMed   Mentions: 26     Fields:    
    127. Mechanisms controlling cell size and shape during isotropic cell spreading. Biophys J. 2010 May 19; 98(10):2136-46. Xiong Y, Rangamani P, Fardin MA, Lipshtat A, Dubin-Thaler B, Rossier O, Sheetz MP, Iyengar R. PMID: 20483321; PMCID: PMC2872297.
      View in: PubMed   Mentions: 30     Fields:    Translation:AnimalsCells
    128. Cell shape and negative links in regulatory motifs together control spatial information flow in signaling networks. Cell. 2008 May 16; 133(4):666-80. Neves SR, Tsokas P, Sarkar A, Grace EA, Rangamani P, Taubenfeld SM, Alberini CM, Schaff JC, Blitzer RD, Moraru II, Iyengar R. PMID: 18485874; PMCID: PMC2728678.
      View in: PubMed   Mentions: 143     Fields:    Translation:AnimalsCells
    129. Modelling cellular signalling systems. Essays Biochem. 2008; 45:83-94. Rangamani P, Iyengar R. PMID: 18793125; PMCID: PMC3270941.
      View in: PubMed   Mentions: 16     Fields:    Translation:HumansAnimalsCells
    130. Survival and apoptotic pathways initiated by TNF-alpha: modeling and predictions. Biotechnol Bioeng. 2007 Aug 01; 97(5):1216-29. Rangamani P, Sirovich L. PMID: 17171720.
      View in: PubMed   Mentions: 34     Fields:    Translation:Cells
    131. Modelling spatio-temporal interactions within the cell. J Biosci. 2007 Jan; 32(1):157-67. Rangamani P, Iyengar R. PMID: 17426388.
      View in: PubMed   Mentions: 8     Fields:    Translation:AnimalsCells
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