Padmini Rangamani

Title(s)Associate Professor, Mechanical and Aerospace Engineering
SchoolVc-academic Affairs
Address9500 Gilman Drive #0411
La Jolla CA 92093
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    1. Phase Separation of a PKA Regulatory Subunit Controls cAMP Compartmentation and Oncogenic Signaling. Cell. 2020 Aug 20. Zhang JZ, Lu TW, Stolerman LM, Tenner B, Yang JR, Zhang JF, Falcke M, Rangamani P, Taylor SS, Mehta S, Zhang J. PMID: 32846158.
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    2. Interactions between calmodulin and neurogranin govern the dynamics of CaMKII as a leaky integrator. PLoS Comput Biol. 2020 Jul 17; 16(7):e1008015. Ordyan M, Bartol T, Kennedy M, Rangamani P, Sejnowski T. PMID: 32678848.
      View in: PubMed   Mentions:    Fields:    Translation:AnimalsCells
    3. Non-uniform distribution of myosin-mediated forces governs red blood cell membrane curvature through tension modulation. PLoS Comput Biol. 2020 05; 16(5):e1007890. Alimohamadi H, Smith AS, Nowak RB, Fowler VM, Rangamani P. PMID: 32453720.
      View in: PubMed   Mentions:    Fields:    Translation:HumansCells
    4. Regulating cellular cyclic adenosine monophosphate: "Sources," "sinks," and now, "tunable valves". Wiley Interdiscip Rev Syst Biol Med. 2020 Apr 23; e1490. Getz M, Rangamani P, Ghosh P. PMID: 32323924.
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    5. 3D mesh processing using GAMer 2 to enable reaction-diffusion simulations in realistic cellular geometries. PLoS Comput Biol. 2020 04; 16(4):e1007756. Lee CT, Laughlin JG, Angliviel de La Beaumelle N, Amaro RE, McCammon JA, Ramamoorthi R, Holst M, Rangamani P. PMID: 32251448.
      View in: PubMed   Mentions:    Fields:    Translation:HumansCells
    6. Rapid community-driven development of a SARS-CoV-2 tissue simulator. bioRxiv. 2020 Apr 05. Wang Y, An G, Becker A, Cockrell C, Collier N, Craig M, Davis CL, Faeder J, Versypt ANF, Gianlupi JF, Glazier JA, Heiland R, Hillen T, Islam MA, Jenner A, Liu B, Morel PA, Narayanan A, Ozik J, Rangamani P, Shoemaker JE, Smith AM, Macklin P. PMID: 32511322.
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    7. Modeling membrane nanotube morphology: the role of heterogeneity in composition and material properties. Sci Rep. 2020 02 13; 10(1):2527. Alimohamadi H, Ovryn B, Rangamani P. PMID: 32054874.
      View in: PubMed   Mentions: 1     Fields:    
    8. Stability Analysis of a Bulk-Surface Reaction Model for Membrane Protein Clustering. Bull Math Biol. 2020 02 06; 82(2):30. Stolerman LM, Getz M, Smith SGL, Holst M, Rangamani P. PMID: 32025918.
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    9. An Open-Source Mesh Generation Platform for Biophysical Modeling Using Realistic Cellular Geometries. Biophys J. 2020 Mar 10; 118(5):1003-1008. Lee CT, Laughlin JG, Moody JB, Amaro RE, McCammon JA, Holst M, Rangamani P. PMID: 32032503.
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    10. A mechanical model reveals that non-axisymmetric buckling lowers the energy barrier associated with membrane neck constriction. Soft Matter. 2020 Jan 22; 16(3):784-797. Vasan R, Rudraraju S, Akamatsu M, Garikipati K, Rangamani P. PMID: 31830191.
      View in: PubMed   Mentions: 1     Fields:    
    11. Principles of self-organization and load adaptation by the actin cytoskeleton during clathrin-mediated endocytosis. Elife. 2020 Jan 17; 9. Akamatsu M, Vasan R, Serwas D, Ferrin MA, Rangamani P, Drubin DG. PMID: 31951196.
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    12. Gaq-mediated calcium dynamics and membrane tension modulate neurite plasticity. Mol Biol Cell. 2020 03 19; 31(7):683-694. Pearce KM, Bell M, Linthicum WH, Wen Q, Srinivasan J, Rangamani P, Scarlata S. PMID: 31825720.
      View in: PubMed   Mentions:    Fields:    
    13. Geometric Control of Frequency Modulation of cAMP Oscillations due to Calcium in Dendritic Spines. Biophys J. 2019 11 19; 117(10):1981-1994. Ohadi D, Rangamani P. PMID: 31668747.
      View in: PubMed   Mentions: 3     Fields:    
    14. Computational Modeling Reveals Frequency Modulation of Calcium-cAMP/PKA Pathway in Dendritic Spines. Biophys J. 2019 11 19; 117(10):1963-1980. Ohadi D, Schmitt DL, Calabrese B, Halpain S, Zhang J, Rangamani P. PMID: 31668749.
      View in: PubMed   Mentions: 4     Fields:    
    15. DLITE Uses Cell-Cell Interface Movement to Better Infer Cell-Cell Tensions. Biophys J. 2019 11 05; 117(9):1714-1727. Vasan R, Maleckar MM, Williams CD, Rangamani P. PMID: 31648791.
      View in: PubMed   Mentions: 1     Fields:    
    16. Geometric coupling of helicoidal ramps and curvature-inducing proteins in organelle membranes. J R Soc Interface. 2019 09 27; 16(158):20190354. Chabanon M, Rangamani P. PMID: 31480932.
      View in: PubMed   Mentions:    Fields:    Translation:Cells
    17. Geometric principles of second messenger dynamics in dendritic spines. Sci Rep. 2019 08 12; 9(1):11676. Cugno A, Bartol TM, Sejnowski TJ, Iyengar R, Rangamani P. PMID: 31406140.
      View in: PubMed   Mentions: 4     Fields:    
    18. Addendum: Dendritic spine geometry and spine apparatus organization govern the spatiotemporal dynamics of calcium. J Gen Physiol. 2019 Sep 02; 151(9):2221-2222. Bell M, Bartol T, Sejnowski T, Rangamani P. PMID: 31375548.
      View in: PubMed   Mentions: 1     Fields:    
    19. Biophysics at the coffee shop: lessons learned working with George Oster. Mol Biol Cell. 2019 07 22; 30(16):1882-1889. Igoshin OA, Chen J, Xing J, Liu J, Elston TC, Grabe M, Kim KS, Nirody JA, Rangamani P, Sun SX, Wang H, Wolgemuth C. PMID: 31322997.
      View in: PubMed   Mentions:    Fields:    Translation:HumansAnimals
    20. Dendritic spine geometry and spine apparatus organization govern the spatiotemporal dynamics of calcium. J Gen Physiol. 2019 08 05; 151(8):1017-1034. Bell M, Bartol T, Sejnowski T, Rangamani P. PMID: 31324651.
      View in: PubMed   Mentions: 3     Fields:    Translation:AnimalsCells
    21. Emerging themes and unifying concepts underlying cell behavior regulation by the pericellular space. Acta Biomater. 2019 09 15; 96:81-98. Scott KE, Rychel K, Ranamukhaarachchi S, Rangamani P, Fraley SI. PMID: 31176842.
      View in: PubMed   Mentions:    Fields:    Translation:HumansAnimalsCells
    22. A predictive computational model reveals that GIV/girdin serves as a tunable valve for EGFR-stimulated cyclic AMP signals. Mol Biol Cell. 2019 06 15; 30(13):1621-1633. Getz M, Swanson L, Sahoo D, Ghosh P, Rangamani P. PMID: 31017840.
      View in: PubMed   Mentions: 2     Fields:    Translation:HumansCells
    23. Lipid Unsaturation Properties Govern the Sensitivity of Membranes to Photoinduced Oxidative Stress. Biophys J. 2019 03 05; 116(5):910-920. Bour A, Kruglik SG, Chabanon M, Rangamani P, Puff N, Bonneau S. PMID: 30777304.
      View in: PubMed   Mentions: 1     Fields:    Translation:Cells
    24. Modeling Membrane Curvature Generation due to Membrane?Protein Interactions. Biomolecules. 2018 10 23; 8(4). Alimohamadi H, Rangamani P. PMID: 30360496.
      View in: PubMed   Mentions: 4     Fields:    Translation:Cells
    25. The role of traction in membrane curvature generation. Mol Biol Cell. 2018 08 08; 29(16):2024-2035. Alimohamadi H, Vasan R, Hassinger JE, Stachowiak JC, Rangamani P. PMID: 30044708.
      View in: PubMed   Mentions: 4     Fields:    Translation:Cells
    26. Solubilization kinetics determines the pulsatory dynamics of lipid vesicles exposed to surfactant. Biochim Biophys Acta Biomembr. 2018 10; 1860(10):2032-2041. Chabanon M, Rangamani P. PMID: 29572034.
      View in: PubMed   Mentions: 1     Fields:    
    27. Gaussian curvature directs the distribution of spontaneous curvature on bilayer membrane necks. Soft Matter. 2018 Mar 28; 14(12):2281-2294. Chabanon M, Rangamani P. PMID: 29513328.
      View in: PubMed   Mentions: 3     Fields:    
    28. Pulsatile Gating of Giant Vesicles Containing Macromolecular Crowding Agents Induced by Colligative Nonideality. J Am Chem Soc. 2018 01 17; 140(2):691-699. Su WC, Gettel DL, Chabanon M, Rangamani P, Parikh AN. PMID: 29303581.
      View in: PubMed   Mentions: 5     Fields:    
    29. Stability analysis in spatial modeling of cell signaling. Wiley Interdiscip Rev Syst Biol Med. 2018 01; 10(1). Getz MC, Nirody JA, Rangamani P. PMID: 28787545.
      View in: PubMed   Mentions:    Fields:    Translation:HumansCells
    30. Systems biology of cellular membranes: a convergence with biophysics. Wiley Interdiscip Rev Syst Biol Med. 2017 09; 9(5). Chabanon M, Stachowiak JC, Rangamani P. PMID: 28475297.
      View in: PubMed   Mentions: 2     Fields:    Translation:HumansAnimalsCells
    31. Pulsatile Lipid Vesicles under Osmotic Stress. Biophys J. 2017 Apr 25; 112(8):1682-1691. Chabanon M, Ho JCS, Liedberg B, Parikh AN, Rangamani P. PMID: 28445759.
      View in: PubMed   Mentions: 3     Fields:    Translation:Cells
    32. Membrane fission by protein crowding. Proc Natl Acad Sci U S A. 2017 04 18; 114(16):E3258-E3267. Snead WT, Hayden CC, Gadok AK, Zhao C, Lafer EM, Rangamani P, Stachowiak JC. PMID: 28373566.
      View in: PubMed   Mentions: 26     Fields:    Translation:AnimalsCells
    33. The GAPs, GEFs, GDIs and…now, GEMs: New kids on the heterotrimeric G protein signaling block. Cell Cycle. 2017 Apr 03; 16(7):607-612. Ghosh P, Rangamani P, Kufareva I. PMID: 28287365.
      View in: PubMed   Mentions: 6     Fields:    Translation:HumansAnimalsCells
    34. Spontaneous formation of nanometer scale tubular vesicles in aqueous mixtures of lipid and block copolymer amphiphiles. Soft Matter. 2017 Feb 08; 13(6):1107-1115. Lim SK, Wong AS, de Hoog HM, Rangamani P, Parikh AN, Nallani M, Sandin S, Liedberg B. PMID: 28058411.
      View in: PubMed   Mentions: 5     Fields:    
    35. Design principles for robust vesiculation in clathrin-mediated endocytosis. Proc Natl Acad Sci U S A. 2017 02 14; 114(7):E1118-E1127. Hassinger JE, Oster G, Drubin DG, Rangamani P. PMID: 28126722.
      View in: PubMed   Mentions: 26     Fields:    Translation:Cells
    36. Paradoxical signaling regulates structural plasticity in dendritic spines. Proc Natl Acad Sci U S A. 2016 09 06; 113(36):E5298-307. Rangamani P, Levy MG, Khan S, Oster G. PMID: 27551076.
      View in: PubMed   Mentions: 6     Fields:    Translation:HumansAnimalsCells
    37. Shear-Induced Nitric Oxide Production by Endothelial Cells. Biophys J. 2016 Jul 12; 111(1):208-21. Sriram K, Laughlin JG, Rangamani P, Tartakovsky DM. PMID: 27410748.
      View in: PubMed   Mentions: 6     Fields:    Translation:Cells
    38. Mixing Water, Transducing Energy, and Shaping Membranes: Autonomously Self-Regulating Giant Vesicles. Langmuir. 2016 Mar 08; 32(9):2151-63. Ho JC, Rangamani P, Liedberg B, Parikh AN. PMID: 26866787.
      View in: PubMed   Mentions: 10     Fields:    
    39. The plasma membrane as a capacitor for energy and metabolism. Am J Physiol Cell Physiol. 2016 Feb 01; 310(3):C181-92. Ray S, Kassan A, Busija AR, Rangamani P, Patel HH. PMID: 26771520.
      View in: PubMed   Mentions: 9     Fields:    Translation:HumansAnimalsCells
    40. Variable tilt on lipid membranes. Proc Math Phys Eng Sci. 2014 Dec 08; 470(2172):20140463. Rangamani P, Steigmann DJ. PMID: 25484606.
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    41. Dual biochemical oscillators may control cellular reversals in Myxococcus xanthus. Biophys J. 2014 Dec 02; 107(11):2700-11. Eckhert E, Rangamani P, Davis AE, Oster G, Berleman JE. PMID: 25468349.
      View in: PubMed   Mentions: 2     Fields:    Translation:Cells
    42. Oscillatory phase separation in giant lipid vesicles induced by transmembrane osmotic differentials. Elife. 2014 Oct 15; 3:e03695. Oglecka K, Rangamani P, Liedberg B, Kraut RS, Parikh AN. PMID: 25318069.
      View in: PubMed   Mentions: 18     Fields:    Translation:AnimalsCells
    43. Protein-induced membrane curvature alters local membrane tension. Biophys J. 2014 Aug 05; 107(3):751-762. Rangamani P, Mandadap KK, Oster G. PMID: 25099814.
      View in: PubMed   Mentions: 16     Fields:    Translation:Cells
    44. Multiscale modeling of cell shape from the actin cytoskeleton. Prog Mol Biol Transl Sci. 2014; 123:143-67. Rangamani P, Xiong GY, Iyengar R. PMID: 24560144.
      View in: PubMed   Mentions: 4     Fields:    Translation:HumansAnimalsCells
    45. Small scale membrane mechanics. Biomech Model Mechanobiol. 2014 Aug; 13(4):697-711. Rangamani P, Benjamini A, Agrawal A, Smit B, Steigmann DJ, Oster G. PMID: 24081650.
      View in: PubMed   Mentions: 10     Fields:    Translation:Cells
    46. Decoding information in cell shape. Cell. 2013 Sep 12; 154(6):1356-69. Rangamani P, Lipshtat A, Azeloglu EU, Calizo RC, Hu M, Ghassemi S, Hone J, Scarlata S, Neves SR, Iyengar R. PMID: 24034255.
      View in: PubMed   Mentions: 37     Fields:    Translation:HumansAnimalsCells
    47. Lipid tubule growth by osmotic pressure. J R Soc Interface. 2013 Nov 06; 10(88):20130637. Rangamani P, Zhang D, Oster G, Shen AQ. PMID: 24004559.
      View in: PubMed   Mentions: 1     Fields:    
    48. Interaction between surface shape and intra-surface viscous flow on lipid membranes. Biomech Model Mechanobiol. 2013 Aug; 12(4):833-45. Rangamani P, Agrawal A, Mandadapu KK, Oster G, Steigmann DJ. PMID: 23086137.
      View in: PubMed   Mentions: 12     Fields:    
    49. Signaling network triggers and membrane physical properties control the actin cytoskeleton-driven isotropic phase of cell spreading. Biophys J. 2011 Feb 16; 100(4):845-57. Rangamani P, Fardin MA, Xiong Y, Lipshtat A, Rossier O, Sheetz MP, Iyengar R. PMID: 21320428.
      View in: PubMed   Mentions: 14     Fields:    Translation:AnimalsCells
    50. Cell spreading as a hydrodynamic process. Soft Matter. 2010 Aug 10; 6:4788-4799. Fardin MA, Rossier OM, Rangamani P, Avigan PD, Gauthier NC, Vonnegut W, Mathur A, Hone J, Iyengar R, Sheetz MP. PMID: 23908673.
      View in: PubMed   Mentions: 13     Fields:    
    51. Mechanisms controlling cell size and shape during isotropic cell spreading. Biophys J. 2010 May 19; 98(10):2136-46. Xiong Y, Rangamani P, Fardin MA, Lipshtat A, Dubin-Thaler B, Rossier O, Sheetz MP, Iyengar R. PMID: 20483321.
      View in: PubMed   Mentions: 21     Fields:    Translation:AnimalsCells
    52. Cell shape and negative links in regulatory motifs together control spatial information flow in signaling networks. Cell. 2008 May 16; 133(4):666-80. Neves SR, Tsokas P, Sarkar A, Grace EA, Rangamani P, Taubenfeld SM, Alberini CM, Schaff JC, Blitzer RD, Moraru II, Iyengar R. PMID: 18485874.
      View in: PubMed   Mentions: 109     Fields:    Translation:AnimalsCells
    53. Modelling cellular signalling systems. Essays Biochem. 2008; 45:83-94. Rangamani P, Iyengar R. PMID: 18793125.
      View in: PubMed   Mentions: 8     Fields:    Translation:HumansAnimalsCells
    54. Survival and apoptotic pathways initiated by TNF-alpha: modeling and predictions. Biotechnol Bioeng. 2007 Aug 01; 97(5):1216-29. Rangamani P, Sirovich L. PMID: 17171720.
      View in: PubMed   Mentions: 21     Fields:    Translation:Cells
    55. Modelling spatio-temporal interactions within the cell. J Biosci. 2007 Jan; 32(1):157-67. Rangamani P, Iyengar R. PMID: 17426388.
      View in: PubMed   Mentions: 5     Fields:    Translation:AnimalsCells
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