Padmini Rangamani

Title(s)Professor, Mechanical and Aerospace Engineering
SchoolVc-academic Affairs
Address9500 Gilman Drive #
La Jolla CA 92093
vCardDownload vCard

    Collapse Bibliographic 
    Collapse Publications
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
    Newest   |   Oldest   |   Most Cited   |   Most Discussed   |   Timeline   |   Field Summary   |   Plain Text
    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Mechanical Principles Governing the Shapes of Dendritic Spines. Front Physiol. 2021; 12:657074. Alimohamadi H, Bell MK, Halpain S, Rangamani P. PMID: 34220531.
      View in: PubMed   Mentions:
    2. A spatial model of YAP/TAZ signaling reveals how stiffness, dimensionality, and shape contribute to emergent outcomes. Proc Natl Acad Sci U S A. 2021 May 18; 118(20). Scott KE, Fraley SI, Rangamani P. PMID: 33990464.
      View in: PubMed   Mentions:    Fields:    
    3. Membrane bending by protein phase separation. Proc Natl Acad Sci U S A. 2021 Mar 16; 118(11). Yuan F, Alimohamadi H, Bakka B, Trementozzi AN, Day KJ, Fawzi NL, Rangamani P, Stachowiak JC. PMID: 33688043.
      View in: PubMed   Mentions: 1     Fields:    
    4. Value of models for membrane budding. Curr Opin Cell Biol. 2021 Mar 08; 71:38-45. Lee CT, Akamatsu M, Rangamani P. PMID: 33706232.
      View in: PubMed   Mentions: 1     Fields:    
    5. Stability Analysis of a Signaling Circuit with Dual Species of GTPase Switches. Bull Math Biol. 2021 Feb 20; 83(4):34. Stolerman LM, Ghosh P, Rangamani P. PMID: 33609194.
      View in: PubMed   Mentions:    Fields:    
    6. Computational modeling approaches to cAMP/PKA signaling in cardiomyocytes. J Mol Cell Cardiol. 2021 05; 154:32-40. McCabe KJ, Rangamani P. PMID: 33548239.
      View in: PubMed   Mentions:    Fields:    
    7. Fund Black scientists. Cell. 2021 Feb 04; 184(3):561-565. Stevens KR, Masters KS, Imoukhuede PI, Haynes KA, Setton LA, Cosgriff-Hernandez E, Lediju Bell MA, Rangamani P, Sakiyama-Elbert SE, Finley SD, Willits RK, Koppes AN, Chesler NC, Christman KL, Allen JB, Wong JY, El-Samad H, Desai TA, Eniola-Adefeso O. PMID: 33503447.
      View in: PubMed   Mentions: 7     Fields:    
    8. The Mechanics and Thermodynamics of Tubule Formation in Biological Membranes. J Membr Biol. 2021 Jun; 254(3):273-291. Mahapatra A, Uysalel C, Rangamani P. PMID: 33462667.
      View in: PubMed   Mentions:    Fields:    
    9. Spatially compartmentalized phase regulation of a Ca2+-cAMP-PKA oscillatory circuit. Elife. 2020 11 17; 9. Tenner B, Getz M, Ross B, Ohadi D, Bohrer CH, Greenwald E, Mehta S, Xiao J, Rangamani P, Zhang J. PMID: 33201801.
      View in: PubMed   Mentions: 5     Fields:    Translation:AnimalsCells
    10. ATP synthase: Evolution, energetics, and membrane interactions. J Gen Physiol. 2020 11 02; 152(11). Nirody JA, Budin I, Rangamani P. PMID: 32966553.
      View in: PubMed   Mentions: 2     Fields:    
    11. Diffuso-kinetic membrane budding dynamics. Soft Matter. 2020 Dec 28; 16(48):10889-10899. Rojas Molina R, Liese S, Alimohamadi H, Rangamani P, Carlson A. PMID: 33125025.
      View in: PubMed   Mentions: 1     Fields:    Translation:Cells
    12. Ten simple rules for women principal investigators during a pandemic. PLoS Comput Biol. 2020 10; 16(10):e1008370. Kreeger PK, Brock A, Gibbs HC, Grande-Allen KJ, Huang AH, Masters KS, Rangamani P, Reagan MR, Servoss SL. PMID: 33119585.
      View in: PubMed   Mentions: 2     Fields:    Translation:HumansPHPublic Health
    13. Phase Separation of a PKA Regulatory Subunit Controls cAMP Compartmentation and Oncogenic Signaling. Cell. 2020 09 17; 182(6):1531-1544.e15. Zhang JZ, Lu TW, Stolerman LM, Tenner B, Yang JR, Zhang JF, Falcke M, Rangamani P, Taylor SS, Mehta S, Zhang J. PMID: 32846158.
      View in: PubMed   Mentions: 17     Fields:    Translation:HumansAnimalsCells
    14. Interactions between calmodulin and neurogranin govern the dynamics of CaMKII as a leaky integrator. PLoS Comput Biol. 2020 07; 16(7):e1008015. Ordyan M, Bartol T, Kennedy M, Rangamani P, Sejnowski T. PMID: 32678848.
      View in: PubMed   Mentions: 3     Fields:    Translation:AnimalsCells
    15. Non-uniform distribution of myosin-mediated forces governs red blood cell membrane curvature through tension modulation. PLoS Comput Biol. 2020 05; 16(5):e1007890. Alimohamadi H, Smith AS, Nowak RB, Fowler VM, Rangamani P. PMID: 32453720.
      View in: PubMed   Mentions: 4     Fields:    Translation:HumansCells
    16. Regulating cellular cyclic adenosine monophosphate: "Sources," "sinks," and now, "tunable valves". Wiley Interdiscip Rev Syst Biol Med. 2020 09; 12(5):e1490. Getz M, Rangamani P, Ghosh P. PMID: 32323924.
      View in: PubMed   Mentions: 1     Fields:    
    17. 3D mesh processing using GAMer 2 to enable reaction-diffusion simulations in realistic cellular geometries. PLoS Comput Biol. 2020 04; 16(4):e1007756. Lee CT, Laughlin JG, Angliviel de La Beaumelle N, Amaro RE, McCammon JA, Ramamoorthi R, Holst M, Rangamani P. PMID: 32251448.
      View in: PubMed   Mentions: 5     Fields:    Translation:HumansCells
    18. Rapid community-driven development of a SARS-CoV-2 tissue simulator. bioRxiv. 2020 Apr 05. Getz M, Wang Y, An G, Asthana M, Becker A, Cockrell C, Collier N, Craig M, Davis CL, Faeder JR, Versypt ANF, Mapder T, Gianlupi JF, Glazier JA, Hamis S, Heiland R, Hillen T, Hou D, Islam MA, Jenner AL, Kurtoglu F, Larkin CI, Liu B, Macfarlane F, Maygrundter P, Morel PA, Narayanan A, Ozik J, Pienaar E, Rangamani P, Saglam AS, Shoemaker JE, Smith AM, Weaver JJA, Macklin P. PMID: 32511322.
      View in: PubMed   Mentions:
    19. Modeling membrane nanotube morphology: the role of heterogeneity in composition and material properties. Sci Rep. 2020 02 13; 10(1):2527. Alimohamadi H, Ovryn B, Rangamani P. PMID: 32054874.
      View in: PubMed   Mentions: 2     Fields:    Translation:HumansAnimalsCells
    20. Stability Analysis of a Bulk-Surface Reaction Model for Membrane Protein Clustering. Bull Math Biol. 2020 02 06; 82(2):30. Stolerman LM, Getz M, Smith SGL, Holst M, Rangamani P. PMID: 32025918.
      View in: PubMed   Mentions:    Fields:    Translation:HumansCells
    21. An Open-Source Mesh Generation Platform for Biophysical Modeling Using Realistic Cellular Geometries. Biophys J. 2020 03 10; 118(5):1003-1008. Lee CT, Laughlin JG, Moody JB, Amaro RE, McCammon JA, Holst M, Rangamani P. PMID: 32032503.
      View in: PubMed   Mentions: 2     Fields:    
    22. Principles of self-organization and load adaptation by the actin cytoskeleton during clathrin-mediated endocytosis. Elife. 2020 01 17; 9. Akamatsu M, Vasan R, Serwas D, Ferrin MA, Rangamani P, Drubin DG. PMID: 31951196.
      View in: PubMed   Mentions: 11     Fields:    Translation:HumansCells
    23. Gaq-mediated calcium dynamics and membrane tension modulate neurite plasticity. Mol Biol Cell. 2020 03 19; 31(7):683-694. Pearce KM, Bell M, Linthicum WH, Wen Q, Srinivasan J, Rangamani P, Scarlata S. PMID: 31825720.
      View in: PubMed   Mentions: 1     Fields:    Translation:AnimalsCells
    24. Geometric Control of Frequency Modulation of cAMP Oscillations due to Calcium in Dendritic Spines. Biophys J. 2019 11 19; 117(10):1981-1994. Ohadi D, Rangamani P. PMID: 31668747.
      View in: PubMed   Mentions: 5     Fields:    Translation:AnimalsCells
    25. Computational Modeling Reveals Frequency Modulation of Calcium-cAMP/PKA Pathway in Dendritic Spines. Biophys J. 2019 11 19; 117(10):1963-1980. Ohadi D, Schmitt DL, Calabrese B, Halpain S, Zhang J, Rangamani P. PMID: 31668749.
      View in: PubMed   Mentions: 8     Fields:    Translation:AnimalsCells
    26. DLITE Uses Cell-Cell Interface Movement to Better Infer Cell-Cell Tensions. Biophys J. 2019 11 05; 117(9):1714-1727. Vasan R, Maleckar MM, Williams CD, Rangamani P. PMID: 31648791.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansCells
    27. Geometric coupling of helicoidal ramps and curvature-inducing proteins in organelle membranes. J R Soc Interface. 2019 09 27; 16(158):20190354. Chabanon M, Rangamani P. PMID: 31480932.
      View in: PubMed   Mentions:    Fields:    Translation:Cells
    28. Geometric principles of second messenger dynamics in dendritic spines. Sci Rep. 2019 08 12; 9(1):11676. Cugno A, Bartol TM, Sejnowski TJ, Iyengar R, Rangamani P. PMID: 31406140.
      View in: PubMed   Mentions: 13     Fields:    Translation:HumansAnimalsCells
    29. Addendum: Dendritic spine geometry and spine apparatus organization govern the spatiotemporal dynamics of calcium. J Gen Physiol. 2019 Sep 02; 151(9):2221-2222. Bell M, Bartol T, Sejnowski T, Rangamani P. PMID: 31375548.
      View in: PubMed   Mentions: 2     Fields:    
    30. Biophysics at the coffee shop: lessons learned working with George Oster. Mol Biol Cell. 2019 07 22; 30(16):1882-1889. Igoshin OA, Chen J, Xing J, Liu J, Elston TC, Grabe M, Kim KS, Nirody JA, Rangamani P, Sun SX, Wang H, Wolgemuth C. PMID: 31322997.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansAnimals
    31. Dendritic spine geometry and spine apparatus organization govern the spatiotemporal dynamics of calcium. J Gen Physiol. 2019 08 05; 151(8):1017-1034. Bell M, Bartol T, Sejnowski T, Rangamani P. PMID: 31324651.
      View in: PubMed   Mentions: 12     Fields:    Translation:AnimalsCells
    32. Emerging themes and unifying concepts underlying cell behavior regulation by the pericellular space. Acta Biomater. 2019 09 15; 96:81-98. Scott KE, Rychel K, Ranamukhaarachchi S, Rangamani P, Fraley SI. PMID: 31176842.
      View in: PubMed   Mentions: 2     Fields:    Translation:HumansAnimalsCells
    33. A predictive computational model reveals that GIV/girdin serves as a tunable valve for EGFR-stimulated cyclic AMP signals. Mol Biol Cell. 2019 06 15; 30(13):1621-1633. Getz M, Swanson L, Sahoo D, Ghosh P, Rangamani P. PMID: 31017840.
      View in: PubMed   Mentions: 5     Fields:    Translation:HumansCells
    34. Lipid Unsaturation Properties Govern the Sensitivity of Membranes to Photoinduced Oxidative Stress. Biophys J. 2019 03 05; 116(5):910-920. Bour A, Kruglik SG, Chabanon M, Rangamani P, Puff N, Bonneau S. PMID: 30777304.
      View in: PubMed   Mentions: 4     Fields:    Translation:Cells
    35. Modeling Membrane Curvature Generation due to Membrane?Protein Interactions. Biomolecules. 2018 10 23; 8(4). Alimohamadi H, Rangamani P. PMID: 30360496.
      View in: PubMed   Mentions: 7     Fields:    Translation:Cells
    36. Solubilization kinetics determines the pulsatory dynamics of lipid vesicles exposed to surfactant. Biochim Biophys Acta Biomembr. 2018 10; 1860(10):2032-2041. Chabanon M, Rangamani P. PMID: 29572034.
      View in: PubMed   Mentions: 1     Fields:    
    37. Gaussian curvature directs the distribution of spontaneous curvature on bilayer membrane necks. Soft Matter. 2018 Mar 28; 14(12):2281-2294. Chabanon M, Rangamani P. PMID: 29513328.
      View in: PubMed   Mentions: 2     Fields:    
    38. Pulsatile Gating of Giant Vesicles Containing Macromolecular Crowding Agents Induced by Colligative Nonideality. J Am Chem Soc. 2018 01 17; 140(2):691-699. Su WC, Gettel DL, Chabanon M, Rangamani P, Parikh AN. PMID: 29303581.
      View in: PubMed   Mentions: 8     Fields:    
    39. Stability analysis in spatial modeling of cell signaling. Wiley Interdiscip Rev Syst Biol Med. 2018 01; 10(1). Getz MC, Nirody JA, Rangamani P. PMID: 28787545.
      View in: PubMed   Mentions:    Fields:    Translation:HumansCells
    40. Systems biology of cellular membranes: a convergence with biophysics. Wiley Interdiscip Rev Syst Biol Med. 2017 09; 9(5). Chabanon M, Stachowiak JC, Rangamani P. PMID: 28475297.
      View in: PubMed   Mentions: 7     Fields:    Translation:HumansAnimalsCells
    41. Pulsatile Lipid Vesicles under Osmotic Stress. Biophys J. 2017 Apr 25; 112(8):1682-1691. Chabanon M, Ho JCS, Liedberg B, Parikh AN, Rangamani P. PMID: 28445759.
      View in: PubMed   Mentions: 10     Fields:    Translation:Cells
    42. Membrane fission by protein crowding. Proc Natl Acad Sci U S A. 2017 04 18; 114(16):E3258-E3267. Snead WT, Hayden CC, Gadok AK, Zhao C, Lafer EM, Rangamani P, Stachowiak JC. PMID: 28373566.
      View in: PubMed   Mentions: 40     Fields:    Translation:AnimalsCells
    43. The GAPs, GEFs, GDIs and…now, GEMs: New kids on the heterotrimeric G protein signaling block. . 2017 Apr 03; 16(7):607-612. Ghosh P, Rangamani P, Kufareva I. PMID: 28287365.
      View in: PubMed   Mentions:
    44. Spontaneous formation of nanometer scale tubular vesicles in aqueous mixtures of lipid and block copolymer amphiphiles. Soft Matter. 2017 Feb 08; 13(6):1107-1115. Lim SK, Wong AS, de Hoog HM, Rangamani P, Parikh AN, Nallani M, Sandin S, Liedberg B. PMID: 28058411.
      View in: PubMed   Mentions: 7     Fields:    
    45. Design principles for robust vesiculation in clathrin-mediated endocytosis. Proc Natl Acad Sci U S A. 2017 02 14; 114(7):E1118-E1127. Hassinger JE, Oster G, Drubin DG, Rangamani P. PMID: 28126722.
      View in: PubMed   Mentions: 36     Fields:    Translation:Cells
    46. Paradoxical signaling regulates structural plasticity in dendritic spines. Proc Natl Acad Sci U S A. 2016 09 06; 113(36):E5298-307. Rangamani P, Levy MG, Khan S, Oster G. PMID: 27551076.
      View in: PubMed   Mentions: 16     Fields:    Translation:HumansAnimalsCells
    47. Shear-Induced Nitric Oxide Production by Endothelial Cells. Biophys J. 2016 Jul 12; 111(1):208-21. Sriram K, Laughlin JG, Rangamani P, Tartakovsky DM. PMID: 27410748.
      View in: PubMed   Mentions: 15     Fields:    Translation:Cells
    48. Mixing Water, Transducing Energy, and Shaping Membranes: Autonomously Self-Regulating Giant Vesicles. Langmuir. 2016 Mar 08; 32(9):2151-63. Ho JC, Rangamani P, Liedberg B, Parikh AN. PMID: 26866787.
      View in: PubMed   Mentions: 15     Fields:    
    49. The plasma membrane as a capacitor for energy and metabolism. . 2016 Feb 01; 310(3):C181-92. Ray S, Kassan A, Busija AR, Rangamani P, Patel HH. PMID: 26771520.
      View in: PubMed   Mentions:
    50. Dual biochemical oscillators may control cellular reversals in Myxococcus xanthus. Biophys J. 2014 Dec 02; 107(11):2700-11. Eckhert E, Rangamani P, Davis AE, Oster G, Berleman JE. PMID: 25468349.
      View in: PubMed   Mentions: 2     Fields:    Translation:Cells
    51. Oscillatory phase separation in giant lipid vesicles induced by transmembrane osmotic differentials. Elife. 2014 Oct 15; 3:e03695. Oglecka K, Rangamani P, Liedberg B, Kraut RS, Parikh AN. PMID: 25318069.
      View in: PubMed   Mentions: 26     Fields:    Translation:AnimalsCells
    52. Protein-induced membrane curvature alters local membrane tension. Biophys J. 2014 Aug 05; 107(3):751-762. Rangamani P, Mandadap KK, Oster G. PMID: 25099814.
      View in: PubMed   Mentions: 24     Fields:    Translation:Cells
    53. Multiscale modeling of cell shape from the actin cytoskeleton. Prog Mol Biol Transl Sci. 2014; 123:143-67. Rangamani P, Xiong GY, Iyengar R. PMID: 24560144.
      View in: PubMed   Mentions: 4     Fields:    Translation:HumansAnimalsCells
    54. Small scale membrane mechanics. Biomech Model Mechanobiol. 2014 Aug; 13(4):697-711. Rangamani P, Benjamini A, Agrawal A, Smit B, Steigmann DJ, Oster G. PMID: 24081650.
      View in: PubMed   Mentions: 10     Fields:    Translation:Cells
    55. Decoding information in cell shape. Cell. 2013 Sep 12; 154(6):1356-69. Rangamani P, Lipshtat A, Azeloglu EU, Calizo RC, Hu M, Ghassemi S, Hone J, Scarlata S, Neves SR, Iyengar R. PMID: 24034255.
      View in: PubMed   Mentions: 57     Fields:    Translation:HumansAnimalsCells
    56. Lipid tubule growth by osmotic pressure. J R Soc Interface. 2013 Nov 06; 10(88):20130637. Rangamani P, Zhang D, Oster G, Shen AQ. PMID: 24004559.
      View in: PubMed   Mentions: 4     Fields:    
    57. Interaction between surface shape and intra-surface viscous flow on lipid membranes. Biomech Model Mechanobiol. 2013 Aug; 12(4):833-45. Rangamani P, Agrawal A, Mandadapu KK, Oster G, Steigmann DJ. PMID: 23086137.
      View in: PubMed   Mentions: 13     Fields:    
    58. Signaling network triggers and membrane physical properties control the actin cytoskeleton-driven isotropic phase of cell spreading. Biophys J. 2011 Feb 16; 100(4):845-57. Rangamani P, Fardin MA, Xiong Y, Lipshtat A, Rossier O, Sheetz MP, Iyengar R. PMID: 21320428.
      View in: PubMed   Mentions: 15     Fields:    Translation:AnimalsCells
    59. Mechanisms controlling cell size and shape during isotropic cell spreading. Biophys J. 2010 May 19; 98(10):2136-46. Xiong Y, Rangamani P, Fardin MA, Lipshtat A, Dubin-Thaler B, Rossier O, Sheetz MP, Iyengar R. PMID: 20483321.
      View in: PubMed   Mentions: 22     Fields:    Translation:AnimalsCells
    60. Cell shape and negative links in regulatory motifs together control spatial information flow in signaling networks. Cell. 2008 May 16; 133(4):666-80. Neves SR, Tsokas P, Sarkar A, Grace EA, Rangamani P, Taubenfeld SM, Alberini CM, Schaff JC, Blitzer RD, Moraru II, Iyengar R. PMID: 18485874.
      View in: PubMed   Mentions: 117     Fields:    Translation:AnimalsCells
    61. Modelling cellular signalling systems. Essays Biochem. 2008; 45:83-94. Rangamani P, Iyengar R. PMID: 18793125.
      View in: PubMed   Mentions: 8     Fields:    Translation:HumansAnimalsCells
    62. Survival and apoptotic pathways initiated by TNF-alpha: modeling and predictions. Biotechnol Bioeng. 2007 Aug 01; 97(5):1216-29. Rangamani P, Sirovich L. PMID: 17171720.
      View in: PubMed   Mentions: 21     Fields:    Translation:Cells
    63. Modelling spatio-temporal interactions within the cell. J Biosci. 2007 Jan; 32(1):157-67. Rangamani P, Iyengar R. PMID: 17426388.
      View in: PubMed   Mentions: 6     Fields:    Translation:AnimalsCells
    Padmini's Networks
    Concepts (234)
    Derived automatically from this person's publications.
    _
    Co-Authors (24)
    People in Profiles who have published with this person.
    _
    Similar People (60)
    People who share similar concepts with this person.
    _
    Same Department
    Search Department
    _