Anita Bandrowski

Title(s)Specialist, Neurosciences
SchoolVc-health Sciences-schools
Address9500 Gilman Drive #
La Jolla CA 92093
ORCID ORCID Icon0000-0002-5497-0243 Additional info
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    Sci-Score, a tool suite to support Rigor and Transparency NIH and Journal Guidelines
    NIH R44MH119094Aug 3, 2017 - Jul 31, 2020
    Role: Principal Investigator
    Sci-Score, a tool to support rigor and transparency guidelines
    NIH R43OD024432Aug 3, 2017 - Aug 2, 2018
    Role: Principal Investigator

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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Open Science 2.0: Towards a truly collaborative research ecosystem. PLoS Biol. 2023 Oct 19; 21(10):e3002362. Thibault RT, Amaral OB, Argolo F, Bandrowski AE, Davidson AR, Drude NI. PMID: 37856538.
      View in: PubMed   Mentions: 1     Fields:    
    2. Scaling of an antibody validation procedure enables quantification of antibody performance in major research applications. bioRxiv. 2023 Aug 17. Ayoubi R, Ryan J, Biddle MS, Alshafie W, Fotouhi M, Bolivar SG, Moleon VR, Eckmann P, Worrall D, McDowell I, Southern K, Reintsch W, Durcan TM, Brown CM, Bandrowski A, Virk HS, Edwards AM, McPherson PS, Laflamme C. PMID: 37398479; PMCID: PMC10312534.
      View in: PubMed   Mentions:
    3. A guide to the BRAIN Initiative Cell Census Network data ecosystem. PLoS Biol. 2023 Jun; 21(6):e3002133. Hawrylycz M, Martone ME, Ascoli GA, Bjaalie JG, Dong HW, Ghosh SS, Gillis J, Hertzano R, Haynor DR, Hof PR, Kim Y, Lein E, Liu Y, Miller JA, Mitra PP, Mukamel E, Ng L, Osumi-Sutherland D, Peng H, Ray PL, Sanchez R, Regev A, Ropelewski A, Scheuermann RH, Tan SZK, Thompson CL, Tickle T, Tilgner H, Varghese M, Wester B, White O, Zeng H, Aevermann B, Allemang D, Ament S, Athey TL, Baker C, Baker KS, Baker PM, Bandrowski A, Banerjee S, Bishwakarma P, Carr A, Chen M, Choudhury R, Cool J, Creasy H, D'Orazi F, Degatano K, Dichter B, Ding SL, Dolbeare T, Ecker JR, Fang R, Fillion-Robin JC, Fliss TP, Gee J, Gillespie T, Gouwens N, Zhang GQ, Halchenko YO, Harris NL, Herb BR, Hintiryan H, Hood G, Horvath S, Huo B, Jarecka D, Jiang S, Khajouei F, Kiernan EA, Kir H, Kruse L, Lee C, Lelieveldt B, Li Y, Liu H, Liu L, Markuhar A, Mathews J, Mathews KL, Mezias C, Miller MI, Mollenkopf T, Mufti S, Mungall CJ, Orvis J, Puchades MA, Qu L, Receveur JP, Ren B, Sjoquist N, Staats B, Tward D, van Velthoven CTJ, Wang Q, Xie F, Xu H, Yao Z, Yun Z, Zhang YR, Zheng WJ, Zingg B. PMID: 37390046; PMCID: PMC10313015.
      View in: PubMed   Mentions:    Fields:    Translation:HumansAnimalsCells
    4. PreprintMatch: A tool for preprint to publication detection shows global inequities in scientific publication. PLoS One. 2023; 18(3):e0281659. Eckmann P, Bandrowski A. PMID: 36888577; PMCID: PMC9994746.
      View in: PubMed   Mentions: 2     Fields:    
    5. The Antibody Registry: ten years of registering antibodies. Nucleic Acids Res. 2023 01 06; 51(D1):D358-D367. Bandrowski A, Pairish M, Eckmann P, Grethe J, Martone ME. PMID: 36370112; PMCID: PMC9825422.
      View in: PubMed   Mentions: 8     Fields:    
    6. Establishing Institutional Scores With the Rigor and Transparency Index: Large-scale Analysis of Scientific Reporting Quality. J Med Internet Res. 2022 06 27; 24(6):e37324. Menke J, Eckmann P, Ozyurt IB, Roelandse M, Anderson N, Grethe J, Gamst A, Bandrowski A. PMID: 35759334; PMCID: PMC9274430.
      View in: PubMed   Mentions: 7     Fields:    Translation:Humans
    7. A decade of GigaScience: What can be learned from half a million RRIDs in the scientific literature? Gigascience. 2022 06 14; 11. Bandrowski A. PMID: 35701373; PMCID: PMC9197678.
      View in: PubMed   Mentions:    Fields:    
    8. Is the future of peer review automated? BMC Res Notes. 2022 Jun 11; 15(1):203. Schulz R, Barnett A, Bernard R, Brown NJL, Byrne JA, Eckmann P, Gazda MA, Kilicoglu H, Prager EM, Salholz-Hillel M, Ter Riet G, Vines T, Vorland CJ, Zhuang H, Bandrowski A, Weissgerber TL. PMID: 35690782; PMCID: PMC9188010.
      View in: PubMed   Mentions: 8     Fields:    
    9. Opinion: Independent third-party entities as a model for validation of commercial antibodies. N Biotechnol. 2021 Nov 25; 65:1-8. Laflamme C, Edwards AM, Bandrowski AE, McPherson PS. PMID: 34246180.
      View in: PubMed   Mentions: 3     Fields:    Translation:Humans
    10. The SPARC DRC: Building a Resource for the Autonomic Nervous System Community. Front Physiol. 2021; 12:693735. Osanlouy M, Bandrowski A, de Bono B, Brooks D, Cassarà AM, Christie R, Ebrahimi N, Gillespie T, Grethe JS, Guercio LA, Heal M, Lin M, Kuster N, Martone ME, Neufeld E, Nickerson DP, Soltani EG, Tappan S, Wagenaar JB, Zhuang K, Hunter PJ. PMID: 34248680; PMCID: PMC8265045.
      View in: PubMed   Mentions: 18  
    11. Antibody Watch: Text mining antibody specificity from the literature. PLoS Comput Biol. 2021 05; 17(5):e1008967. Hsu CN, Chang CH, Poopradubsil T, Lo A, William KA, Lin KW, Bandrowski A, Ozyurt IB, Grethe JS, Martone ME. PMID: 34043624; PMCID: PMC8189493.
      View in: PubMed   Mentions: 2     Fields:    Translation:HumansAnimals
    12. Integration of evidence across human and model organism studies: A meeting report. Genes Brain Behav. 2021 Apr 23; e12738. Palmer RHC, Johnson EC, Won H, Polimanti R, Kapoor M, Chitre A, Bogue MA, Benca-Bachman CE, Parker CC, Verma A, Reynolds T, Ernst J, Bray M, Kwon SB, Lai D, Quach BC, Gaddis NC, Saba L, Chen H, Hawrylycz M, Zhang S, Zhou Y, Mahaffey S, Fischer C, Sanchez-Roige S, Bandrowski A, Lu Q, Shen L, Philip V, Gelernter J, Bierut LJ, Hancock DB, Edenberg HJ, Johnson EO, Nestler EJ, Barr PB, Prins P, Smith DJ, Akbarian S, Thorgeirsson T, Walton D, Baker E, Jacobson D, Palmer AA, Miles M, Chesler EJ, Emerson J, Agrawal A, Martone M, Williams RW. PMID: 33893716; PMCID: PMC8365690.
      View in: PubMed   Mentions: 6     Fields:    
    13. Automated screening of COVID-19 preprints: can we help authors to improve transparency and reproducibility? Nat Med. 2021 01; 27(1):6-7. Weissgerber T, Riedel N, Kilicoglu H, Labbé C, Eckmann P, Ter Riet G, Byrne J, Cabanac G, Capes-Davis A, Favier B, Saladi S, Grabitz P, Bannach-Brown A, Schulz R, McCann S, Bernard R, Bandrowski A. PMID: 33432174; PMCID: PMC8177099.
      View in: PubMed   Mentions: 16     Fields:    Translation:Humans
    14. The Rigor and Transparency Index Quality Metric for Assessing Biological and Medical Science Methods. iScience. 2020 Nov 20; 23(11):101698. Menke J, Roelandse M, Ozyurt B, Martone M, Bandrowski A. PMID: 33196023; PMCID: PMC7644557.
      View in: PubMed   Mentions: 16  
    15. Bio-AnswerFinder: a system to find answers to questions from biomedical texts. Database (Oxford). 2020 01 01; 2020. Ozyurt IB, Bandrowski A, Grethe JS. PMID: 31925435; PMCID: PMC7053013.
      View in: PubMed   Mentions: 1     Fields:    Translation:Humans
    16. The Antibody Society's antibody validation webinar series. MAbs. 2020 Jan-Dec; 12(1):1794421. Voskuil JLA, Bandrowski A, Begley CG, Bradbury ARM, Chalmers AD, Gomes AV, Hardcastle T, Lund-Johansen F, Plückthun A, Roncador G, Solache A, Taussig MJ, Trimmer JS, Williams C, Goodman SL. PMID: 32748696; PMCID: PMC7531563.
      View in: PubMed   Mentions: 14     Fields:    Translation:Humans
    17. Incidences of problematic cell lines are lower in papers that use RRIDs to identify cell lines. Elife. 2019 01 29; 8. Babic Z, Capes-Davis A, Martone ME, Bairoch A, Ozyurt IB, Gillespie TH, Bandrowski AE. PMID: 30693867; PMCID: PMC6351100.
      View in: PubMed   Mentions: 15     Fields:    Translation:HumansCells
    18. Improving transparency and scientific rigor in academic publishing. Brain Behav. 2019 01; 9(1):e01141. Prager EM, Chambers KE, Plotkin JL, McArthur DL, Bandrowski AE, Bansal N, Martone ME, Bergstrom HC, Bespalov A, Graf C. PMID: 30506879; PMCID: PMC6346653.
      View in: PubMed   Mentions: 9     Fields:    Translation:Humans
    19. Improving transparency and scientific rigor in academic publishing. J Neurosci Res. 2019 04; 97(4):377-390. Prager EM, Chambers KE, Plotkin JL, McArthur DL, Bandrowski AE, Bansal N, Martone ME, Bergstrom HC, Bespalov A, Graf C. PMID: 30506706.
      View in: PubMed   Mentions: 16     Fields:    Translation:Humans
    20. Improving transparency and scientific rigor in academic publishing. Cancer Rep (Hoboken). 2019 02; 2(1):e1150. Prager EM, Chambers KE, Plotkin JL, McArthur DL, Bandrowski AE, Bansal N, Martone ME, Bergstrom HC, Bespalov A, Graf C. PMID: 32721132; PMCID: PMC7941525.
      View in: PubMed   Mentions: 3     Fields:    Translation:Humans
    21. A proposal for validation of antibodies. Nat Methods. 2016 10; 13(10):823-7. Uhlen M, Bandrowski A, Carr S, Edwards A, Ellenberg J, Lundberg E, Rimm DL, Rodriguez H, Hiltke T, Snyder M, Yamamoto T. PMID: 27595404; PMCID: PMC10335836.
      View in: PubMed   Mentions: 227     Fields:    Translation:Humans
    22. RRIDs: A Simple Step toward Improving Reproducibility through Rigor and Transparency of Experimental Methods. Neuron. 2016 05 04; 90(3):434-6. Bandrowski AE, Martone ME. PMID: 27151636; PMCID: PMC5854161.
      View in: PubMed   Mentions: 26     Fields:    Translation:Humans
    23. The Ontology for Biomedical Investigations. PLoS One. 2016; 11(4):e0154556. Bandrowski A, Brinkman R, Brochhausen M, Brush MH, Bug B, Chibucos MC, Clancy K, Courtot M, Derom D, Dumontier M, Fan L, Fostel J, Fragoso G, Gibson F, Gonzalez-Beltran A, Haendel MA, He Y, Heiskanen M, Hernandez-Boussard T, Jensen M, Lin Y, Lister AL, Lord P, Malone J, Manduchi E, McGee M, Morrison N, Overton JA, Parkinson H, Peters B, Rocca-Serra P, Ruttenberg A, Sansone SA, Scheuermann RH, Schober D, Smith B, Soldatova LN, Stoeckert CJ, Taylor CF, Torniai C, Turner JA, Vita R, Whetzel PL, Zheng J. PMID: 27128319; PMCID: PMC4851331.
      View in: PubMed   Mentions: 97     Fields:    Translation:HumansAnimals
    24. The Resource Identification Initiative: A Cultural Shift in Publishing. Neuroinformatics. 2016 Apr; 14(2):169-82. Bandrowski A, Brush M, Grethe JS, Haendel MA, Kennedy DN, Hill S, Hof PR, Martone ME, Pols M, Tan SS, Washington N, Zudilova-Seinstra E, Vasilevsky N, RINL Resource Identification Initiative. PMID: 26589523; PMCID: PMC5072392.
      View in: PubMed   Mentions: 20     Fields:    Translation:Humans
    25. Reproducibility and conflicts in immune epitope data. Immunology. 2016 Mar; 147(3):349-54. Vita R, Vasilevsky N, Bandrowski A, Haendel M, Sette A, Peters B. PMID: 26678806; PMCID: PMC4754615.
      View in: PubMed   Mentions: 2     Fields:    Translation:Humans
    26. Resource Disambiguator for the Web: Extracting Biomedical Resources and Their Citations from the Scientific Literature. PLoS One. 2016; 11(1):e0146300. Ozyurt IB, Grethe JS, Martone ME, Bandrowski AE. PMID: 26730820; PMCID: PMC5156472.
      View in: PubMed   Mentions: 12     Fields:    Translation:Humans
    27. The Resource Identification Initiative: A Cultural Shift in Publishing. J Comp Neurol. 2016 Jan 01; 524(1):8-22. Bandrowski A, Brush M, Grethe JS, Haendel MA, Kennedy DN, Hill S, Hof PR, Martone ME, Pols M, Tan SC, Washington N, Zudilova-Seinstra E, Vasilevsky N. PMID: 26599696; PMCID: PMC4684178.
      View in: PubMed   Mentions: 17     Fields:    Translation:Animals
    28. The Resource Identification Initiative: a cultural shift in publishing. Brain Behav. 2016 01; 6(1):e00417. Bandrowski A, Brush M, Grethe JS, Haendel MA, Kennedy DN, Hill S, Hof PR, Martone ME, Pols M, Tan SC, Washington N, Zudilova-Seinstra E, Vasilevsky N, RINL Resource Identification Initiative. PMID: 27110440; PMCID: PMC4834942.
      View in: PubMed   Mentions: 23     Fields:    Translation:Humans
    29. The Resource Identification Initiative: A cultural shift in publishing. F1000Res. 2015; 4:134. Bandrowski A, Brush M, Grethe JS, Haendel MA, Kennedy DN, Hill S, Hof PR, Martone ME, Pols M, Tan S, Washington N, Zudilova-Seinstra E, Vasilevsky N, Resource Identification Initiative Members are listed here: https://www.force11.org/node/4463/member. PMID: 26594330; PMCID: PMC4648211.
      View in: PubMed   Mentions: 31     Fields:    
    30. Early experiences in developing and managing the neuroscience gateway. Concurr Comput. 2015 Feb 01; 27(2):473-488. Sivagnanam S, Majumdar A, Yoshimoto K, Astakhov V, Bandrowski A, Martone M, Carnevale NT. PMID: 26523124; PMCID: PMC4624199.
      View in: PubMed   Mentions: 18  
    31. Big data from small data: data-sharing in the 'long tail' of neuroscience. Nat Neurosci. 2014 Nov; 17(11):1442-7. Ferguson AR, Nielson JL, Cragin MH, Bandrowski AE, Martone ME. PMID: 25349910; PMCID: PMC4728080.
      View in: PubMed   Mentions: 81     Fields:    Translation:HumansAnimals
    32. OMICtools: an informative directory for multi-omic data analysis. Database (Oxford). 2014; 2014. Henry VJ, Bandrowski AE, Pepin AS, Gonzalez BJ, Desfeux A. PMID: 25024350; PMCID: PMC4095679.
      View in: PubMed   Mentions: 81     Fields:    
    33. Interdisciplinary perspectives on the development, integration, and application of cognitive ontologies. Front Neuroinform. 2014; 8:62. Hastings J, Frishkoff GA, Smith B, Jensen M, Poldrack RA, Lomax J, Bandrowski A, Imam F, Turner JA, Martone ME. PMID: 24999329; PMCID: PMC4064452.
      View in: PubMed   Mentions: 10  
    34. Promoting research resource identification at JCN. J Comp Neurol. 2014 Jun 01; 522(8):1707. Bandrowski A, Tan S, Hof PR. PMID: 24723247.
      View in: PubMed   Mentions: 5     Fields:    Translation:HumansAnimals
    35. Extending the NIF DISCO framework to automate complex workflow: coordinating the harvest and integration of data from diverse neuroscience information resources. Front Neuroinform. 2014; 8:58. Marenco LN, Wang R, Bandrowski AE, Grethe JS, Shepherd GM, Miller PL. PMID: 25018728; PMCID: PMC4071641.
      View in: PubMed   Mentions: 12  
    36. The UCLA multimodal connectivity database: a web-based platform for brain connectivity matrix sharing and analysis. Front Neuroinform. 2012; 6:28. Brown JA, Rudie JD, Bandrowski A, Van Horn JD, Bookheimer SY. PMID: 23226127; PMCID: PMC3508475.
      View in: PubMed   Mentions: 51  
    37. Development and use of Ontologies Inside the Neuroscience Information Framework: A Practical Approach. Front Genet. 2012; 3:111. Imam FT, Larson SD, Bandrowski A, Grethe JS, Gupta A, Martone ME. PMID: 22737162; PMCID: PMC3381282.
      View in: PubMed   Mentions: 27  
    38. A hybrid human and machine resource curation pipeline for the Neuroscience Information Framework. Database (Oxford). 2012; 2012:bas005. Bandrowski AE, Cachat J, Li Y, Müller HM, Sternberg PW, Ciccarese P, Clark T, Marenco L, Wang R, Astakhov V, Grethe JS, Martone ME. PMID: 22434839; PMCID: PMC3308161.
      View in: PubMed   Mentions: 14     Fields:    Translation:Humans
    39. Prototype of Kepler Processing Workflows For Microscopy And Neuroinformatics. Procedia Comput Sci. 2012; 9:1595-1603. Astakhov V, Bandrowski A, Gupta A, Kulungowski AW, Grethe JS, Bouwer J, Molina T, Rowley V, Penticoff S, Terada M, Wong W, Hakozaki H, Kwon O, Martone ME, Ellisman M. PMID: 28479932; PMCID: PMC5415345.
      View in: PubMed   Mentions: 1  
    40. A survey of the neuroscience resource landscape: perspectives from the neuroscience information framework. Int Rev Neurobiol. 2012; 103:39-68. Cachat J, Bandrowski A, Grethe JS, Gupta A, Astakhov V, Imam F, Larson SD, Martone ME. PMID: 23195120.
      View in: PubMed   Mentions: 13     Fields:    Translation:HumansAnimals
    41. Modulation of epileptiform activity by glutamine and system A transport in a model of post-traumatic epilepsy. Neurobiol Dis. 2007 Feb; 25(2):230-8. Tani H, Bandrowski AE, Parada I, Wynn M, Huguenard JR, Prince DA, Reimer RJ. PMID: 17070687; PMCID: PMC1952182.
      View in: PubMed   Mentions: 20     Fields:    Translation:Animals
    42. Cortical injury affects short-term plasticity of evoked excitatory synaptic currents. J Neurophysiol. 2005 Jan; 93(1):146-56. Li H, Bandrowski AE, Prince DA. PMID: 15342719.
      View in: PubMed   Mentions: 13     Fields:    Translation:AnimalsCells
    43. Baseline glutamate levels affect group I and II mGluRs in layer V pyramidal neurons of rat sensorimotor cortex. J Neurophysiol. 2003 Mar; 89(3):1308-16. Bandrowski AE, Huguenard JR, Prince DA. PMID: 12626613; PMCID: PMC3005275.
      View in: PubMed   Mentions: 26     Fields:    Translation:AnimalsCells
    44. Tetanic stimulation and metabotropic glutamate receptor agonists modify synaptic responses and protein kinase activity in rat auditory cortex. Brain Res. 2001 Mar 16; 894(2):218-32. Bandrowski AE, Ashe JH, Crawford CA. PMID: 11251195.
      View in: PubMed   Mentions: 4     Fields:    Translation:AnimalsCells
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