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Nuclear pyruvate dehydrogenase complex regulates histone acetylation and transcriptional regulation in the ethylene response. Sci Adv. 2024 Jul 26; 10(30):eado2825.
Shao Z, Bian L, Ahmadi SK, Daniel TJ, Belmonte MA, Burns JG, Kotla P, Bi Y, Shen Z, Xu SL, Wang ZY, Briggs SP, Qiao H. PMID: 39058774; PMCID: PMC11277378.
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PubMed Mentions: Fields:
Translation:
AnimalsCells
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Nuclear Pyruvate Dehydrogenase Complex Regulates Histone Acetylation and Transcriptional Regulation in the Ethylene Response. bioRxiv. 2024 May 06.
Shao Z, Bian L, Ahmadi SK, Daniel TJ, Belmonte MA, Burns JG, Kotla P, Bi Y, Shen Z, Xu SL, Wang ZY, Briggs SP, Qiao H. PMID: 37961310; PMCID: PMC10634830.
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PubMed Mentions:
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Suppression of pinoid mutant phenotypes by mutations in PIN-FORMED 1 and PIN1-GFP fusion. Proc Natl Acad Sci U S A. 2023 Nov 28; 120(48):e2312918120.
Mudgett M, Shen Z, Dai X, Briggs SP, Zhao Y. PMID: 37983505; PMCID: PMC10691239.
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PubMed Mentions:
1 Fields:
Translation:
Animals
-
Plant height heterosis is quantitatively associated with expression levels of plastid ribosomal proteins. Proc Natl Acad Sci U S A. 2021 11 23; 118(47).
Birdseye D, de Boer LA, Bai H, Zhou P, Shen Z, Schmelz EA, Springer NM, Briggs SP. PMID: 34782463; PMCID: PMC8617506.
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PubMed Mentions:
9 Fields:
Translation:
AnimalsCells
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Vision, challenges and opportunities for a Plant Cell Atlas. Elife. 2021 09 07; 10.
Plant Cell Atlas Consortium, Jha SG, Borowsky AT, Cole BJ, Fahlgren N, Farmer A, Huang SC, Karia P, Libault M, Provart NJ, Rice SL, Saura-Sanchez M, Agarwal P, Ahkami AH, Anderton CR, Briggs SP, Brophy JA, Denolf P, Di Costanzo LF, Exposito-Alonso M, Giacomello S, Gomez-Cano F, Kaufmann K, Ko DK, Kumar S, Malkovskiy AV, Nakayama N, Obata T, Otegui MS, Palfalvi G, Quezada-Rodríguez EH, Singh R, Uhrig RG, Waese J, Van Wijk K, Wright RC, Ehrhardt DW, Birnbaum KD, Rhee SY. PMID: 34491200; PMCID: PMC8423441.
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PubMed Mentions:
19 Fields:
Translation:
AnimalsCells
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Nitrate triggered phosphoproteome changes and a PIN2 phosphosite modulating root system architecture. EMBO Rep. 2021 09 06; 22(9):e51813.
Vega A, Fredes I, O'Brien J, Shen Z, Ötvös K, Abualia R, Benkova E, Briggs SP, Gutiérrez RA. PMID: 34357701; PMCID: PMC8447600.
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PubMed Mentions:
12 Fields:
Translation:
Animals
-
Genetic elucidation of interconnected antibiotic pathways mediating maize innate immunity. Nat Plants. 2020 11; 6(11):1375-1388.
Ding Y, Weckwerth PR, Poretsky E, Murphy KM, Sims J, Saldivar E, Christensen SA, Char SN, Yang B, Tong AD, Shen Z, Kremling KA, Buckler ES, Kono T, Nelson DR, Bohlmann J, Bakker MG, Vaughan MM, Khalil AS, Betsiashvili M, Dressano K, Köllner TG, Briggs SP, Zerbe P, Schmelz EA, Huffaker A. PMID: 33106639.
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PubMed Mentions:
34 Fields:
Translation:
Animals
-
Dynamic regulation of Pep-induced immunity through post-translational control of defence transcript splicing. Nat Plants. 2020 08; 6(8):1008-1019.
Dressano K, Weckwerth PR, Poretsky E, Takahashi Y, Villarreal C, Shen Z, Schroeder JI, Briggs SP, Huffaker A. PMID: 32690890; PMCID: PMC7482133.
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PubMed Mentions:
23 Fields:
Translation:
AnimalsCells
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Meta Gene Regulatory Networks in Maize Highlight Functionally Relevant Regulatory Interactions. Plant Cell. 2020 05; 32(5):1377-1396.
Zhou P, Li Z, Magnusson E, Gomez Cano F, Crisp PA, Noshay JM, Grotewold E, Hirsch CN, Briggs SP, Springer NM. PMID: 32184350; PMCID: PMC7203921.
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PubMed Mentions:
26 Fields:
Translation:
Animals
-
View in:
PubMed Mentions:
15
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Multiple genes recruited from hormone pathways partition maize diterpenoid defences. Nat Plants. 2019 10; 5(10):1043-1056.
Ding Y, Murphy KM, Poretsky E, Mafu S, Yang B, Char SN, Christensen SA, Saldivar E, Wu M, Wang Q, Ji L, Schmitz RJ, Kremling KA, Buckler ES, Shen Z, Briggs SP, Bohlmann J, Sher A, Castro-Falcon G, Hughes CC, Huffaker A, Zerbe P, Schmelz EA. PMID: 31527844.
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PubMed Mentions:
39 Fields:
Translation:
Animals
-
Auxin Induces Widespread Proteome Remodeling in Arabidopsis Seedlings. Proteomics. 2019 09; 19(17):e1900199.
Clark NM, Shen Z, Briggs SP, Walley JW, Kelley DR. PMID: 31381813.
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PubMed Mentions:
4 Fields:
Translation:
Animals
-
Identification of the expressome by machine learning on omics data. Proc Natl Acad Sci U S A. 2019 09 03; 116(36):18119-18125.
Sartor RC, Noshay J, Springer NM, Briggs SP. PMID: 31420517; PMCID: PMC6731682.
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PubMed Mentions:
22 Fields:
Translation:
Animals
-
LIKE SEX4 1 Acts as a β-Amylase-Binding Scaffold on Starch Granules during Starch Degradation. Plant Cell. 2019 09; 31(9):2169-2186.
Schreier TB, Umhang M, Lee SK, Lue WL, Shen Z, Silver D, Graf A, Müller A, Eicke S, Stadler-Waibel M, Seung D, Bischof S, Briggs SP, Kötting O, Moorhead GBG, Chen J, Zeeman SC. PMID: 31266901; PMCID: PMC6751131.
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PubMed Mentions:
10 Fields:
Translation:
AnimalsCells
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The Second Site Modifier, Sympathy for the ligule, Encodes a Homolog of Arabidopsis ENHANCED DISEASE RESISTANCE4 and Rescues the Liguleless narrow Maize Mutant. Plant Cell. 2019 08; 31(8):1829-1844.
Anderson A, St Aubin B, Abraham-Juárez MJ, Leiboff S, Shen Z, Briggs S, Brunkard JO, Hake S. PMID: 31217219; PMCID: PMC6713312.
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PubMed Mentions:
5 Fields:
Translation:
Animals
-
Quantitative Early Auxin Root Proteomics Identifies GAUT10, a Galacturonosyltransferase, as a Novel Regulator of Root Meristem Maintenance. Mol Cell Proteomics. 2019 06; 18(6):1157-1170.
Pu Y, Walley JW, Shen Z, Lang MG, Briggs SP, Estelle M, Kelley DR. PMID: 30918009; PMCID: PMC6553934.
View in:
PubMed Mentions:
9 Fields:
Translation:
Animals
-
Magnesium Flux Modulates Ribosomes to Increase Bacterial Survival. Cell. 2019 04 04; 177(2):352-360.e13.
Lee DD, Galera-Laporta L, Bialecka-Fornal M, Moon EC, Shen Z, Briggs SP, Garcia-Ojalvo J, Süel GM. PMID: 30853217; PMCID: PMC6814349.
View in:
PubMed Mentions:
56 Fields:
Translation:
Cells
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Dynamic Patterns of Gene Expression Additivity and Regulatory Variation throughout Maize Development. Mol Plant. 2019 03 04; 12(3):410-425.
Zhou P, Hirsch CN, Briggs SP, Springer NM. PMID: 30593858.
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PubMed Mentions:
42 Fields:
Translation:
AnimalsCells
-
Wnt5a induces ROR1 to recruit DOCK2 to activate Rac1/2 in chronic lymphocytic leukemia. Blood. 2018 07 12; 132(2):170-178.
Hasan MK, Yu J, Widhopf GF, Rassenti LZ, Chen L, Shen Z, Briggs SP, Neuberg DS, Kipps TJ. PMID: 29678828; PMCID: PMC6043980.
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PubMed Mentions:
28 Fields:
Translation:
HumansAnimalsCells
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Discovery, Biosynthesis and Stress-Related Accumulation of Dolabradiene-Derived Defenses in Maize. Plant Physiol. 2018 04; 176(4):2677-2690.
Mafu S, Ding Y, Murphy KM, Yaacoobi O, Addison JB, Wang Q, Shen Z, Briggs SP, Bohlmann J, Castro-Falcon G, Hughes CC, Betsiashvili M, Huffaker A, Schmelz EA, Zerbe P. PMID: 29475898; PMCID: PMC5884620.
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PubMed Mentions:
52 Fields:
Translation:
AnimalsCells
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The Dictyostelium GSK3 kinase GlkA coordinates signal relay and chemotaxis in response to growth conditions. Dev Biol. 2018 03 01; 435(1):56-72.
Lacal Romero J, Shen Z, Baumgardner K, Wei J, Briggs SP, Firtel RA. PMID: 29355521.
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PubMed Mentions:
5 Fields:
Translation:
AnimalsCells
-
Fungal-induced protein hyperacetylation in maize identified by acetylome profiling. Proc Natl Acad Sci U S A. 2018 01 02; 115(1):210-215.
Walley JW, Shen Z, McReynolds MR, Schmelz EA, Briggs SP. PMID: 29259121; PMCID: PMC5776827.
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PubMed Mentions:
42 Fields:
Translation:
AnimalsCells
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Initiation of ER Body Formation and Indole Glucosinolate Metabolism by the Plastidial Retrograde Signaling Metabolite, MEcPP. Mol Plant. 2017 11 06; 10(11):1400-1416.
Wang JZ, Li B, Xiao Y, Ni Y, Ke H, Yang P, de Souza A, Bjornson M, He X, Shen Z, Balcke GU, Briggs SP, Tissier A, Kliebenstein DJ, Dehesh K. PMID: 28965830; PMCID: PMC6368977.
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PubMed Mentions:
13 Fields:
Translation:
AnimalsCells
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Wnt5a induces ROR1 to complex with HS1 to enhance migration of chronic lymphocytic leukemia cells. Leukemia. 2017 12; 31(12):2615-2622.
Hasan MK, Yu J, Chen L, Cui B, Widhopf Ii GF, Rassenti L, Shen Z, Briggs SP, Kipps TJ. PMID: 28465529; PMCID: PMC5670028.
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PubMed Mentions:
32 Fields:
Translation:
HumansCells
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Wnt5a induces ROR1 to associate with 14-3-3ζ for enhanced chemotaxis and proliferation of chronic lymphocytic leukemia cells. Leukemia. 2017 12; 31(12):2608-2614.
Yu J, Chen L, Chen Y, Hasan MK, Ghia EM, Zhang L, Wu R, Rassenti LZ, Widhopf GF, Shen Z, Briggs SP, Kipps TJ. PMID: 28465528; PMCID: PMC5670032.
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PubMed Mentions:
27 Fields:
Translation:
HumansAnimalsCells
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Integration of omic networks in a developmental atlas of maize. Science. 2016 Aug 19; 353(6301):814-8.
Walley JW, Sartor RC, Shen Z, Schmitz RJ, Wu KJ, Urich MA, Nery JR, Smith LG, Schnable JC, Ecker JR, Briggs SP. PMID: 27540173; PMCID: PMC5808982.
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PubMed Mentions:
204 Fields:
Translation:
AnimalsCells
-
The small GTPases Ras and Rap1 bind to and control TORC2 activity. Sci Rep. 2016 05 13; 6:25823.
Khanna A, Lotfi P, Chavan AJ, Montaño NM, Bolourani P, Weeks G, Shen Z, Briggs SP, Pots H, Van Haastert PJ, Kortholt A, Charest PG. PMID: 27172998; PMCID: PMC4865869.
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PubMed Mentions:
37 Fields:
Translation:
AnimalsCells
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Wnt5a induces ROR1/ROR2 heterooligomerization to enhance leukemia chemotaxis and proliferation. J Clin Invest. 2016 Feb; 126(2):585-98.
Yu J, Chen L, Cui B, Widhopf GF, Shen Z, Wu R, Zhang L, Zhang S, Briggs SP, Kipps TJ. PMID: 26690702; PMCID: PMC4731190.
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PubMed Mentions:
109 Fields:
Translation:
HumansAnimalsCells
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Identification of Evening Complex Associated Proteins in Arabidopsis by Affinity Purification and Mass Spectrometry. Mol Cell Proteomics. 2016 Jan; 15(1):201-17.
Huang H, Alvarez S, Bindbeutel R, Shen Z, Naldrett MJ, Evans BS, Briggs SP, Hicks LM, Kay SA, Nusinow DA. PMID: 26545401; PMCID: PMC4762519.
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PubMed Mentions:
93 Fields:
Translation:
AnimalsCells
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Proteomics studies of the interactome of RNA polymerase II C-terminal repeated domain. BMC Res Notes. 2015 Oct 29; 8:616.
Pineda G, Shen Z, de Albuquerque CP, Reynoso E, Chen J, Tu CC, Tang W, Briggs S, Zhou H, Wang JY. PMID: 26515650; PMCID: PMC4627417.
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PubMed Mentions:
9 Fields:
Translation:
HumansCells
-
The matrix protein Fibulin-5 is at the interface of tissue stiffness and inflammation in fibrosis. Nat Commun. 2015 Oct 15; 6:8574.
Nakasaki M, Hwang Y, Xie Y, Kataria S, Gund R, Hajam EY, Samuel R, George R, Danda D, M J P, Nakamura T, Shen Z, Briggs S, Varghese S, Jamora C. PMID: 26469761; PMCID: PMC4634219.
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PubMed Mentions:
33 Fields:
Translation:
HumansAnimalsCells
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Plastid-produced interorgannellar stress signal MEcPP potentiates induction of the unfolded protein response in endoplasmic reticulum. Proc Natl Acad Sci U S A. 2015 May 12; 112(19):6212-7.
Walley J, Xiao Y, Wang JZ, Baidoo EE, Keasling JD, Shen Z, Briggs SP, Dehesh K. PMID: 25922532; PMCID: PMC4434691.
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PubMed Mentions:
48 Fields:
Translation:
AnimalsCells
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Dual use of peptide mass spectra: Protein atlas and genome annotation. Curr Plant Biol. 2015 May 01; 2:21-24.
Walley JW, Briggs SP. PMID: 26811807; PMCID: PMC4723421.
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PubMed Mentions:
6
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A high-resolution tissue-specific proteome and phosphoproteome atlas of maize primary roots reveals functional gradients along the root axes. Plant Physiol. 2015 May; 168(1):233-46.
Marcon C, Malik WA, Walley JW, Shen Z, Paschold A, Smith LG, Piepho HP, Briggs SP, Hochholdinger F. PMID: 25780097; PMCID: PMC4424028.
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PubMed Mentions:
21 Fields:
Translation:
AnimalsCells
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Potato aphid salivary proteome: enhanced salivation using resorcinol and identification of aphid phosphoproteins. J Proteome Res. 2015 Apr 03; 14(4):1762-78.
Chaudhary R, Atamian HS, Shen Z, Briggs SP, Kaloshian I. PMID: 25722084.
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PubMed Mentions:
19 Fields:
Translation:
AnimalsCells
-
Stemness factor Sall4 is required for DNA damage response in embryonic stem cells. J Cell Biol. 2015 Mar 02; 208(5):513-20.
Xiong J, Todorova D, Su NY, Kim J, Lee PJ, Shen Z, Briggs SP, Xu Y. PMID: 25733712; PMCID: PMC4347641.
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PubMed Mentions:
31 Fields:
Translation:
AnimalsCells
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Response and adaptation of Escherichia coli to suppression of the amber stop codon. Chembiochem. 2014 Aug 18; 15(12):1744-9.
Wang Q, Sun T, Xu J, Shen Z, Briggs SP, Zhou D, Wang L. PMID: 25044429; PMCID: PMC4156322.
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PubMed Mentions:
6 Fields:
Translation:
Cells
-
GroEL from the endosymbiont Buchnera aphidicola betrays the aphid by triggering plant defense. Proc Natl Acad Sci U S A. 2014 Jun 17; 111(24):8919-24.
Chaudhary R, Atamian HS, Shen Z, Briggs SP, Kaloshian I. PMID: 24927572; PMCID: PMC4066539.
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PubMed Mentions:
83 Fields:
Translation:
AnimalsCells
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UV irradiation accelerates amyloid precursor protein (APP) processing and disrupts APP axonal transport. J Neurosci. 2014 Feb 26; 34(9):3320-39.
Almenar-Queralt A, Falzone TL, Shen Z, Lillo C, Killian RL, Arreola AS, Niederst ED, Ng KS, Kim SN, Briggs SP, Williams DS, Goldstein LS. PMID: 24573290; PMCID: PMC3935090.
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PubMed Mentions:
14 Fields:
Translation:
HumansAnimalsCells
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ROR1 can interact with TCL1 and enhance leukemogenesis in Eμ-TCL1 transgenic mice. Proc Natl Acad Sci U S A. 2014 Jan 14; 111(2):793-8.
Widhopf GF, Cui B, Ghia EM, Chen L, Messer K, Shen Z, Briggs SP, Croce CM, Kipps TJ. PMID: 24379361; PMCID: PMC3896194.
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PubMed Mentions:
52 Fields:
Translation:
HumansAnimalsCells
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Reconstruction of protein networks from an atlas of maize seed proteotypes. Proc Natl Acad Sci U S A. 2013 Dec 03; 110(49):E4808-17.
Walley JW, Shen Z, Sartor R, Wu KJ, Osborn J, Smith LG, Briggs SP. PMID: 24248366; PMCID: PMC3856832.
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PubMed Mentions:
61 Fields:
Translation:
AnimalsCells
-
An automated proteogenomic method uses mass spectrometry to reveal novel genes in Zea mays. Mol Cell Proteomics. 2014 Jan; 13(1):157-67.
Castellana NE, Shen Z, He Y, Walley JW, Cassidy CJ, Briggs SP, Bafna V. PMID: 24142994; PMCID: PMC3879611.
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PubMed Mentions:
30 Fields:
Translation:
HumansAnimals
-
Quantitative proteomic and functional analysis of liver mitochondria from high fat diet (HFD) diabetic mice. Mol Cell Proteomics. 2013 Dec; 12(12):3744-58.
Guo Y, Darshi M, Ma Y, Perkins GA, Shen Z, Haushalter KJ, Saito R, Chen A, Lee YS, Patel HH, Briggs SP, Ellisman MH, Olefsky JM, Taylor SS. PMID: 24030101; PMCID: PMC3861721.
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PubMed Mentions:
32 Fields:
Translation:
AnimalsCells
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Parallel proteomic and phosphoproteomic analyses of successive stages of maize leaf development. Plant Cell. 2013 Aug; 25(8):2798-812.
Facette MR, Shen Z, Björnsdóttir FR, Briggs SP, Smith LG. PMID: 23933881; PMCID: PMC3784581.
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PubMed Mentions:
40 Fields:
Translation:
AnimalsCells
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Response to perspective: "separation anxiety: an analysis of ethylene-induced cleavage of EIN2". Plant Signal Behav. 2013 Aug; 8(8).
Qiao H, Shen Z, Huang SS, Schmitz RJ, Urich MA, Briggs SP, Ecker JR. PMID: 23733051; PMCID: PMC3999072.
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PubMed Mentions:
4 Fields:
Translation:
AnimalsCells
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The need for agriculture phenotyping: "moving from genotype to phenotype". J Proteomics. 2013 Nov 20; 93:20-39.
Boggess MV, Lippolis JD, Hurkman WJ, Fagerquist CK, Briggs SP, Gomes AV, Righetti PG, Bala K. PMID: 23563084.
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PubMed Mentions:
6 Fields:
Translation:
HumansAnimalsCellsPHPublic Health
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Plant elicitor peptides are conserved signals regulating direct and indirect antiherbivore defense. Proc Natl Acad Sci U S A. 2013 Apr 02; 110(14):5707-12.
Huffaker A, Pearce G, Veyrat N, Erb M, Turlings TC, Sartor R, Shen Z, Briggs SP, Vaughan MM, Alborn HT, Teal PE, Schmelz EA. PMID: 23509266; PMCID: PMC3619339.
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PubMed Mentions:
71 Fields:
Translation:
AnimalsCells
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Identification of PAN2 by quantitative proteomics as a leucine-rich repeat-receptor-like kinase acting upstream of PAN1 to polarize cell division in maize. Plant Cell. 2012 Nov; 24(11):4577-89.
Zhang X, Facette M, Humphries JA, Shen Z, Park Y, Sutimantanapi D, Sylvester AW, Briggs SP, Smith LG. PMID: 23175742; PMCID: PMC3531853.
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PubMed Mentions:
43 Fields:
Translation:
AnimalsCells
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Daydreamer, a Ras effector and GSK-3 substrate, is important for directional sensing and cell motility. Mol Biol Cell. 2013 Jan; 24(2):100-14.
Kölsch V, Shen Z, Lee S, Plak K, Lotfi P, Chang J, Charest PG, Romero JL, Jeon TJ, Kortholt A, Briggs SP, Firtel RA. PMID: 23135995; PMCID: PMC3541958.
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PubMed Mentions:
8 Fields:
Translation:
AnimalsCells
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Processing and subcellular trafficking of ER-tethered EIN2 control response to ethylene gas. Science. 2012 Oct 19; 338(6105):390-3.
Qiao H, Shen Z, Huang SS, Schmitz RJ, Urich MA, Briggs SP, Ecker JR. PMID: 22936567; PMCID: PMC3523706.
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PubMed Mentions:
214 Fields:
Translation:
AnimalsCells
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Robust expression and secretion of Xylanase1 in Chlamydomonas reinhardtii by fusion to a selection gene and processing with the FMDV 2A peptide. PLoS One. 2012; 7(8):e43349.
Rasala BA, Lee PA, Shen Z, Briggs SP, Mendez M, Mayfield SP. PMID: 22937037; PMCID: PMC3427385.
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PubMed Mentions:
73 Fields:
Translation:
AnimalsCells
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Heterologous expression of the C-terminal antigenic domain of the malaria vaccine candidate Pfs48/45 in the green algae Chlamydomonas reinhardtii. Appl Microbiol Biotechnol. 2013 Mar; 97(5):1987-95.
Jones CS, Luong T, Hannon M, Tran M, Gregory JA, Shen Z, Briggs SP, Mayfield SP. PMID: 22592550.
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PubMed Mentions:
31 Fields:
Translation:
AnimalsCells
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Expanding the genetic code of Caenorhabditis elegans using bacterial aminoacyl-tRNA synthetase/tRNA pairs. ACS Chem Biol. 2012 Jul 20; 7(7):1292-302.
Parrish AR, She X, Xiang Z, Coin I, Shen Z, Briggs SP, Dillin A, Wang L. PMID: 22554080; PMCID: PMC3401359.
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PubMed Mentions:
53 Fields:
Translation:
Animals
-
Accurate mass spectrometry based protein quantification via shared peptides. J Comput Biol. 2012 Apr; 19(4):337-48.
Dost B, Bandeira N, Li X, Shen Z, Briggs SP, Bafna V. PMID: 22414154; PMCID: PMC3317402.
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PubMed Mentions:
23 Fields:
Translation:
AnimalsCells
-
Biochemical and phosphoproteomic analysis of the helix-loop-helix protein E47. Mol Cell Biol. 2012 May; 32(9):1671-82.
Teachenor R, Beck K, Wright LY, Shen Z, Briggs SP, Murre C. PMID: 22354994; PMCID: PMC3347234.
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PubMed Mentions:
15 Fields:
Translation:
HumansAnimalsCells
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The HUPO initiative on Model Organism Proteomes, iMOP. Proteomics. 2012 Feb; 12(3):340-5.
Jones AM, Aebersold R, Ahrens CH, Apweiler R, Baerenfaller K, Baker M, Bendixen E, Briggs S, Brownridge P, Brunner E, Daube M, Deutsch EW, Grossniklaus U, Heazlewood J, Hengartner MO, Hermjakob H, Jovanovic M, Lawless C, Lochnit G, Martens L, Ravnsborg C, Schrimpf SP, Shim YH, Subasic D, Tholey A, Wijk Kv, Mering Cv, Weiss M, Zheng X. PMID: 22290800.
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PubMed Mentions:
2 Fields:
Translation:
HumansAnimals
-
Proteomic divergence in Arabidopsis autopolyploids and allopolyploids and their progenitors. Heredity (Edinb). 2012 Apr; 108(4):419-30.
Ng DW, Zhang C, Miller M, Shen Z, Briggs SP, Chen ZJ. PMID: 22009271; PMCID: PMC3313054.
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PubMed Mentions:
35 Fields:
Translation:
Animals
-
RF1 knockout allows ribosomal incorporation of unnatural amino acids at multiple sites. Nat Chem Biol. 2011 Sep 18; 7(11):779-86.
Johnson DB, Xu J, Shen Z, Takimoto JK, Schultz MD, Schmitz RJ, Xiang Z, Ecker JR, Briggs SP, Wang L. PMID: 21926996; PMCID: PMC3201715.
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PubMed Mentions:
140 Fields:
Translation:
Cells
-
A fluorescent reporter of the phosphorylation status of the substrate protein STAT3. Angew Chem Int Ed Engl. 2011 Sep 05; 50(37):8692-6.
Lacey VK, Parrish AR, Han S, Shen Z, Briggs SP, Ma Y, Wang L. PMID: 21805546; PMCID: PMC3197789.
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PubMed Mentions:
12 Fields:
Translation:
Cells
-
The LRRK2-related Roco kinase Roco2 is regulated by Rab1A and controls the actin cytoskeleton. Mol Biol Cell. 2011 Jul 01; 22(13):2198-211.
Kicka S, Shen Z, Annesley SJ, Fisher PR, Lee S, Briggs S, Firtel RA. PMID: 21551065; PMCID: PMC3128523.
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PubMed Mentions:
9 Fields:
Translation:
AnimalsCells
-
MASCP Gator: an aggregation portal for the visualization of Arabidopsis proteomics data. Plant Physiol. 2011 Jan; 155(1):259-70.
Joshi HJ, Hirsch-Hoffmann M, Baerenfaller K, Gruissem W, Baginsky S, Schmidt R, Schulze WX, Sun Q, van Wijk KJ, Egelhofer V, Wienkoop S, Weckwerth W, Bruley C, Rolland N, Toyoda T, Nakagami H, Jones AM, Briggs SP, Castleden I, Tanz SK, Millar AH, Heazlewood JL. PMID: 21075962; PMCID: PMC3075751.
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PubMed Mentions:
41 Fields:
Translation:
AnimalsCells
-
Regulation of STIM1 and SOCE by the ubiquitin-proteasome system (UPS). PLoS One. 2010 Oct 18; 5(10):e13465.
Keil JM, Shen Z, Briggs SP, Patrick GN. PMID: 20976103; PMCID: PMC2956693.
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PubMed Mentions:
26 Fields:
Translation:
HumansAnimalsCells
-
Phosphorylation stabilizes Nanog by promoting its interaction with Pin1. Proc Natl Acad Sci U S A. 2010 Jul 27; 107(30):13312-7.
Moretto-Zita M, Jin H, Shen Z, Zhao T, Briggs SP, Xu Y. PMID: 20622153; PMCID: PMC2922169.
View in:
PubMed Mentions:
83 Fields:
Translation:
HumansAnimalsCells
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Nematode effectors and plant responses to infection. Curr Opin Plant Biol. 2010 Aug; 13(4):442-8.
Bellafiore S, Briggs SP. PMID: 20542724.
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PubMed Mentions:
19 Fields:
Translation:
HumansAnimals
-
Quantitative proteome analysis of pluripotent cells by iTRAQ mass tagging reveals post-transcriptional regulation of proteins required for ES cell self-renewal. Mol Cell Proteomics. 2010 Oct; 9(10):2238-51.
O'Brien RN, Shen Z, Tachikawa K, Lee PA, Briggs SP. PMID: 20513800; PMCID: PMC2953917.
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PubMed Mentions:
23 Fields:
Translation:
AnimalsCells
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A Ras signaling complex controls the RasC-TORC2 pathway and directed cell migration. Dev Cell. 2010 May 18; 18(5):737-49.
Charest PG, Shen Z, Lakoduk A, Sasaki AT, Briggs SP, Firtel RA. PMID: 20493808; PMCID: PMC2893887.
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PubMed Mentions:
88 Fields:
Translation:
HumansAnimalsCells
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Climate change and the integrity of science. Science. 2010 May 07; 328(5979):689-90.
Gleick PH, Adams RM, Amasino RM, Anders E, Anderson DJ, Anderson WW, Anselin LE, Arroyo MK, Asfaw B, Ayala FJ, Bax A, Bebbington AJ, Bell G, Bennett MV, Bennetzen JL, Berenbaum MR, Berlin OB, Bjorkman PJ, Blackburn E, Blamont JE, Botchan MR, Boyer JS, Boyle EA, Branton D, Briggs SP, Briggs WR, Brill WJ, Britten RJ, Broecker WS, Brown JH, Brown PO, Brunger AT, Cairns J, Canfield DE, Carpenter SR, Carrington JC, Cashmore AR, Castilla JC, Cazenave A, Chapin FS, Ciechanover AJ, Clapham DE, Clark WC, Clayton RN, Coe MD, Conwell EM, Cowling EB, Cowling RM, Cox CS, Croteau RB, Crothers DM, Crutzen PJ, Daily GC, Dalrymple GB, Dangl JL, Darst SA, Davies DR, Davis MB, De Camilli PV, Dean C, DeFries RS, Deisenhofer J, Delmer DP, DeLong EF, DeRosier DJ, Diener TO, Dirzo R, Dixon JE, Donoghue MJ, Doolittle RF, Dunne T, Ehrlich PR, Eisenstadt SN, Eisner T, Emanuel KA, Englander SW, Ernst WG, Falkowski PG, Feher G, Ferejohn JA, Fersht A, Fischer EH, Fischer R, Flannery KV, Frank J, Frey PA, Fridovich I, Frieden C, Futuyma DJ, Gardner WR, Garrett CJ, Gilbert W, Goldberg RB, Goodenough WH, Goodman CS, Goodman M, Greengard P, Hake S, Hammel G, Hanson S, Harrison SC, Hart SR, Hartl DL, Haselkorn R, Hawkes K, Hayes JM, Hille B, Hökfelt T, House JS, Hout M, Hunten DM, Izquierdo IA, Jagendorf AT, Janzen DH, Jeanloz R, Jencks CS, Jury WA, Kaback HR, Kailath T, Kay P, Kay SA, Kennedy D, Kerr A, Kessler RC, Khush GS, Kieffer SW, Kirch PV, Kirk K, Kivelson MG, Klinman JP, Klug A, Knopoff L, Kornberg H, Kutzbach JE, Lagarias JC, Lambeck K, Landy A, Langmuir CH, Larkins BA, Le Pichon XT, Lenski RE, Leopold EB, Levin SA, Levitt M, Likens GE, Lippincott-Schwartz J, Lorand L, Lovejoy CO, Lynch M, Mabogunje AL, Malone TF, Manabe S, Marcus J, Massey DS, McWilliams JC, Medina E, Melosh HJ, Meltzer DJ, Michener CD, Miles EL, Mooney HA, Moore PB, Morel FM, Mosley-Thompson ES, Moss B, Munk WH, Myers N, Nair GB, Nathans J, Nester EW, Nicoll RA, Novick RP, O'Connell JF, Olsen PE, Opdyke ND, Oster GF, Ostrom E, Pace NR, Paine RT, Palmiter RD, Pedlosky J, Petsko GA, Pettengill GH, Philander SG, Piperno DR, Pollard TD, Price PB, Reichard PA, Reskin BF, Ricklefs RE, Rivest RL, Roberts JD, Romney AK, Rossmann MG, Russell DW, Rutter WJ, Sabloff JA, Sagdeev RZ, Sahlins MD, Salmond A, Sanes JR, Schekman R, Schellnhuber J, Schindler DW, Schmitt J, Schneider SH, Schramm VL, Sederoff RR, Shatz CJ, Sherman F, Sidman RL, Sieh K, Simons EL, Singer BH, Singer MF, Skyrms B, Sleep NH, Smith BD, Snyder SH, Sokal RR, Spencer CS, Steitz TA, Strier KB, Südhof TC, Taylor SS, Terborgh J, Thomas DH, Thompson LG, Tjian RT, Turner MG, Uyeda S, Valentine JW, Valentine JS, Van Etten JL, van Holde KE, Vaughan M, Verba S, von Hippel PH, Wake DB, Walker A, Walker JE, Watson EB, Watson PJ, Weigel D, Wessler SR, West-Eberhard MJ, White TD, Wilson WJ, Wolfenden RV, Wood JA, Woodwell GM, Wright HE, Wu C, Wunsch C, Zoback ML. PMID: 20448167; PMCID: PMC5125622.
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PubMed Mentions:
10 Fields:
Translation:
Humans
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Involvement of the cytoskeleton in controlling leading-edge function during chemotaxis. Mol Biol Cell. 2010 Jun 01; 21(11):1810-24.
Lee S, Shen Z, Robinson DN, Briggs S, Firtel RA. PMID: 20375144; PMCID: PMC2877640.
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PubMed Mentions:
30 Fields:
Translation:
AnimalsCells
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Regulatory network of microRNAs in RAW 264.7 macrophage cells. Annu Int Conf IEEE Eng Med Biol Soc. 2010; 2010:6198-201.
Garmire LX, Shen Z, Briggs S, Yeo G, Subramaniam S, Glass C. PMID: 21097158.
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PubMed Mentions:
1 Fields:
Translation:
AnimalsCells
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Application of proteomic marker ensembles to subcellular organelle identification. Mol Cell Proteomics. 2010 Feb; 9(2):388-402.
Andreyev AY, Shen Z, Guan Z, Ryan A, Fahy E, Subramaniam S, Raetz CR, Briggs S, Dennis EA. PMID: 19884172; PMCID: PMC2830848.
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PubMed Mentions:
20 Fields:
Translation:
AnimalsCells
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Sunday driver interacts with two distinct classes of axonal organelles. J Biol Chem. 2009 Dec 11; 284(50):34628-39.
Abe N, Almenar-Queralt A, Lillo C, Shen Z, Lozach J, Briggs SP, Williams DS, Goldstein LS, Cavalli V. PMID: 19801628; PMCID: PMC2787325.
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PubMed Mentions:
40 Fields:
Translation:
AnimalsCells
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Discovery and revision of Arabidopsis genes by proteogenomics. Proc Natl Acad Sci U S A. 2008 Dec 30; 105(52):21034-8.
Castellana NE, Payne SH, Shen Z, Stanke M, Bafna V, Briggs SP. PMID: 19098097; PMCID: PMC2605632.
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PubMed Mentions:
125 Fields:
Translation:
Animals
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Dictyostelium Dock180-related RacGEFs regulate the actin cytoskeleton during cell motility. Mol Biol Cell. 2009 Jan; 20(2):699-707.
Para A, Krischke M, Merlot S, Shen Z, Oberholzer M, Lee S, Briggs S, Firtel RA. PMID: 19037099; PMCID: PMC2626555.
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PubMed Mentions:
15 Fields:
Translation:
HumansAnimalsCells
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Direct identification of the Meloidogyne incognita secretome reveals proteins with host cell reprogramming potential. PLoS Pathog. 2008 Oct; 4(10):e1000192.
Bellafiore S, Shen Z, Rosso MN, Abad P, Shih P, Briggs SP. PMID: 18974830; PMCID: PMC2568823.
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PubMed Mentions:
84 Fields:
Translation:
Animals
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Activation of the unfolded protein response is required for defenses against bacterial pore-forming toxin in vivo. PLoS Pathog. 2008 Oct; 4(10):e1000176.
Bischof LJ, Kao CY, Los FC, Gonzalez MR, Shen Z, Briggs SP, van der Goot FG, Aroian RV. PMID: 18846208; PMCID: PMC2553261.
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PubMed Mentions:
112 Fields:
Translation:
HumansAnimalsCells
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Regulation of contractile vacuole formation and activity in Dictyostelium. EMBO J. 2008 Aug 06; 27(15):2064-76.
Du F, Edwards K, Shen Z, Sun B, De Lozanne A, Briggs S, Firtel RA. PMID: 18636095; PMCID: PMC2516880.
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PubMed Mentions:
27 Fields:
Translation:
AnimalsCells
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Clustering millions of tandem mass spectra. J Proteome Res. 2008 Jan; 7(1):113-22.
Frank AM, Bandeira N, Shen Z, Tanner S, Briggs SP, Smith RD, Pevzner PA. PMID: 18067247; PMCID: PMC2533155.
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PubMed Mentions:
115 Fields:
Translation:
Cells
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Accurate annotation of peptide modifications through unrestrictive database search. J Proteome Res. 2008 Jan; 7(1):170-81.
Tanner S, Payne SH, Dasari S, Shen Z, Wilmarth PA, David LL, Loomis WF, Briggs SP, Bafna V. PMID: 18034453.
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PubMed Mentions:
21 Fields:
Translation:
Cells
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Improving gene annotation using peptide mass spectrometry. Genome Res. 2007 Feb; 17(2):231-9.
Tanner S, Shen Z, Ng J, Florea L, Guigó R, Briggs SP, Bafna V. PMID: 17189379; PMCID: PMC1781355.
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PubMed Mentions:
85 Fields:
Translation:
HumansCells
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ELYS is a dual nucleoporin/kinetochore protein required for nuclear pore assembly and proper cell division. Proc Natl Acad Sci U S A. 2006 Nov 21; 103(47):17801-6.
Rasala BA, Orjalo AV, Shen Z, Briggs S, Forbes DJ. PMID: 17098863; PMCID: PMC1635652.
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PubMed Mentions:
153 Fields:
Translation:
HumansAnimalsCells
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Targeting the human genome. Curr Opin Biotechnol. 2006 Dec; 17(6):659-65.
Tachikawa K, Briggs SP. PMID: 17085035.
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PubMed Mentions:
1 Fields:
Translation:
Humans
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A high-resolution map of Arabidopsis recombinant inbred lines by whole-genome exon array hybridization. PLoS Genet. 2006 Sep 15; 2(9):e144.
Singer T, Fan Y, Chang HS, Zhu T, Hazen SP, Briggs SP. PMID: 17044735; PMCID: PMC1564425.
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PubMed Mentions:
58 Fields:
Translation:
AnimalsCells
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The Nup107-160 nucleoporin complex is required for correct bipolar spindle assembly. Mol Biol Cell. 2006 Sep; 17(9):3806-18.
Orjalo AV, Arnaoutov A, Shen Z, Boyarchuk Y, Zeitlin SG, Fontoura B, Briggs S, Dasso M, Forbes DJ. PMID: 16807356; PMCID: PMC1593160.
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PubMed Mentions:
90 Fields:
Translation:
HumansAnimalsCells
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Alterations in oxidative phosphorylation complex proteins in the hearts of transgenic mice that overexpress the p38 MAP kinase activator, MAP kinase kinase 6. Am J Physiol Heart Circ Physiol. 2006 Nov; 291(5):H2462-72.
Wall JA, Wei J, Ly M, Belmont P, Martindale JJ, Tran D, Sun J, Chen WJ, Yu W, Oeller P, Briggs S, Gustafsson AB, Sayen MR, Gottlieb RA, Glembotski CC. PMID: 16766635.
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PubMed Mentions:
14 Fields:
Translation:
AnimalsCells
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Use of high-throughput LC-MS/MS proteomics technologies in drug discovery. Drug Discov Today Technol. 2006; 3(3):301-6.
Shen Z, Wang MW, Briggs SP. PMID: 24980532.
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PubMed Mentions:
1 Fields:
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Genetic networks. Plant Physiol. 2005 Jun; 138(2):542-4.
Briggs SP, Singer T. PMID: 15955909; PMCID: PMC1150365.
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PubMed Mentions:
1 Fields:
Translation:
AnimalsCells
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Comparative transcriptomics of rice reveals an ancient pattern of response to microbial colonization. Proc Natl Acad Sci U S A. 2005 May 31; 102(22):8066-70.
Güimil S, Chang HS, Zhu T, Sesma A, Osbourn A, Roux C, Ioannidis V, Oakeley EJ, Docquier M, Descombes P, Briggs SP, Paszkowski U. PMID: 15905328; PMCID: PMC1142390.
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PubMed Mentions:
117 Fields:
Translation:
Animals
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Regulation of the endogenous VEGF-A gene by exogenous designed regulatory proteins. Proc Natl Acad Sci U S A. 2004 Oct 19; 101(42):15225-30.
Tachikawa K, Schröder O, Frey G, Briggs SP, Sera T. PMID: 15475575; PMCID: PMC523457.
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PubMed Mentions:
21 Fields:
Translation:
HumansCells
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Loss of an MDR transporter in compact stalks of maize br2 and sorghum dw3 mutants. Science. 2003 Oct 03; 302(5642):81-4.
Multani DS, Briggs SP, Chamberlin MA, Blakeslee JJ, Murphy AS, Johal GS. PMID: 14526073.
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PubMed Mentions:
196 Fields:
Translation:
AnimalsCells
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Heritable endogenous gene regulation in plants with designed polydactyl zinc finger transcription factors. Proc Natl Acad Sci U S A. 2002 Oct 01; 99(20):13296-301.
Guan X, Stege J, Kim M, Dahmani Z, Fan N, Heifetz P, Barbas CF, Briggs SP. PMID: 12271125; PMCID: PMC130627.
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PubMed Mentions:
32 Fields:
Translation:
HumansAnimalsCells
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Rice phosphate transporters include an evolutionarily divergent gene specifically activated in arbuscular mycorrhizal symbiosis. Proc Natl Acad Sci U S A. 2002 Oct 01; 99(20):13324-9.
Paszkowski U, Kroken S, Roux C, Briggs SP. PMID: 12271140; PMCID: PMC130632.
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PubMed Mentions:
184 Fields:
Translation:
AnimalsCells
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Membrane-mediated ultrafast restriction digestion and subsequent rapid gel microchip electrophoresis of DNA. Electrophoresis. 2002 May; 23(10):1524-30.
Guttman A, Ronai Z, Barta C, Hou YM, Sasvari-Szekely M, Wang X, Briggs SP. PMID: 12116164.
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PubMed Mentions: Fields:
Translation:
Cells
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A draft sequence of the rice genome (Oryza sativa L. ssp. japonica). Science. 2002 Apr 05; 296(5565):92-100.
Goff SA, Ricke D, Lan TH, Presting G, Wang R, Dunn M, Glazebrook J, Sessions A, Oeller P, Varma H, Hadley D, Hutchison D, Martin C, Katagiri F, Lange BM, Moughamer T, Xia Y, Budworth P, Zhong J, Miguel T, Paszkowski U, Zhang S, Colbert M, Sun WL, Chen L, Cooper B, Park S, Wood TC, Mao L, Quail P, Wing R, Dean R, Yu Y, Zharkikh A, Shen R, Sahasrabudhe S, Thomas A, Cannings R, Gutin A, Pruss D, Reid J, Tavtigian S, Mitchell J, Eldredge G, Scholl T, Miller RM, Bhatnagar S, Adey N, Rubano T, Tusneem N, Robinson R, Feldhaus J, Macalma T, Oliphant A, Briggs S. PMID: 11935018.
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PubMed Mentions:
1079 Fields:
Translation:
AnimalsCells
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National Science Foundation-Sponsored Workshop Report: "The 2010 Project" functional genomics and the virtual plant. A blueprint for understanding how plants are built and how to improve them. Plant Physiol. 2000 Jun; 123(2):423-6.
Chory J, Ecker JR, Briggs S, Caboche M, Coruzzi GM, Cook D, Dangl J, Grant S, Guerinot ML, Henikoff S, Martienssen R, Okada K, Raikhel NV, Somerville CR, Weigel D. PMID: 10859172; PMCID: PMC1539254.
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PubMed Mentions:
23 Fields:
Translation:
Animals
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A porphyrin pathway impairment is responsible for the phenotype of a dominant disease lesion mimic mutant of maize. Plant Cell. 1998 Jul; 10(7):1095-1105.
Hu G, Yalpani N, Briggs SP, Johal GS. PMID: 9668130; PMCID: PMC144048.
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PubMed Mentions:
89 Fields:
Translation:
AnimalsCells
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Regulation of leaf initiation by the terminal ear 1 gene of maize. Nature. 1998 May 14; 393(6681):166-8.
Veit B, Briggs SP, Schmidt RJ, Yanofsky MF, Hake S. PMID: 9603518.
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PubMed Mentions:
57 Fields:
Translation:
AnimalsCells
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Plant-pathogen microevolution: molecular basis for the origin of a fungal disease in maize. Proc Natl Acad Sci U S A. 1998 Feb 17; 95(4):1686-91.
Multani DS, Meeley RB, Paterson AH, Gray J, Briggs SP, Johal GS. PMID: 9465077; PMCID: PMC19149.
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PubMed Mentions:
21 Fields:
Translation:
AnimalsCells
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Plant genomics moves into the limelight. Genome Res. 1997 Sep; 7(9):856-7.
Briggs SP, Helentjaris T. PMID: 9314490.
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PubMed Mentions: Fields:
Translation:
Animals
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Analysis of a chemical plant defense mechanism in grasses. Science. 1997 Aug 01; 277(5326):696-9.
Frey M, Chomet P, Glawischnig E, Stettner C, Grün S, Winklmair A, Eisenreich W, Bacher A, Meeley RB, Briggs SP, Simcox K, Gierl A. PMID: 9235894.
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PubMed Mentions:
204 Fields:
Translation:
AnimalsCells
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A novel suppressor of cell death in plants encoded by the Lls1 gene of maize. Cell. 1997 Apr 04; 89(1):25-31.
Gray J, Close PS, Briggs SP, Johal GS. PMID: 9094711.
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PubMed Mentions:
88 Fields:
Translation:
AnimalsCells
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Diversification of C-function activity in maize flower development. Science. 1996 Nov 29; 274(5292):1537-40.
Mena M, Ambrose BA, Meeley RB, Briggs SP, Yanofsky MF, Schmidt RJ. PMID: 8929416.
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PubMed Mentions:
95 Fields:
Translation:
AnimalsCells
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Modification of a Specific Class of Plasmodesmata and Loss of Sucrose Export Ability in the sucrose export defective1 Maize Mutant. Plant Cell. 1996 Apr; 8(4):645-658.
Russin WA, Evert RF, Vanderveer PJ, Sharkey TD, Briggs SP. PMID: 12239395; PMCID: PMC161126.
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PubMed Mentions:
45 Fields:
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Two SH2 domains of p120 Ras GTPase-activating protein bind synergistically to tyrosine phosphorylated p190 Rho GTPase-activating protein. J Biol Chem. 1995 Jul 28; 270(30):17947-52.
Bryant SS, Briggs S, Smithgall TE, Martin GA, McCormick F, Chang JH, Parsons SJ, Jove R. PMID: 7629101.
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PubMed Mentions:
19 Fields:
Translation:
HumansAnimalsCells
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Plant disease resistance. Grand unification theory in sight. Curr Biol. 1995 Feb 01; 5(2):128-31.
Briggs SP. PMID: 7743174.
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PubMed Mentions:
3 Fields:
Translation:
AnimalsCells
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Cloning and characterization of the maize An1 gene. Plant Cell. 1995 Jan; 7(1):75-84.
Bensen RJ, Johal GS, Crane VC, Tossberg JT, Schnable PS, Meeley RB, Briggs SP. PMID: 7696880; PMCID: PMC160766.
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PubMed Mentions:
187 Fields:
Translation:
AnimalsCells
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Genetic patterns of plant host-parasite interactions. Trends Genet. 1994 Jan; 10(1):12-6.
Briggs SP, Johal GS. PMID: 8146909.
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PubMed Mentions:
4 Fields:
Translation:
AnimalsCells
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Reductase activity encoded by the HM1 disease resistance gene in maize. Science. 1992 Nov 06; 258(5084):985-7.
Johal GS, Briggs SP. PMID: 1359642.
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PubMed Mentions:
126 Fields:
Translation:
AnimalsCells
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A Biochemical Phenotype for a Disease Resistance Gene of Maize. Plant Cell. 1992 Jan; 4(1):71-77.
Meeley RB, Johal GS, Briggs SP, Walton JD. PMID: 12297630; PMCID: PMC160107.
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PubMed Mentions:
21 Fields:
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Changes in tobacco cell membrane composition and structure caused by cercosporin. Plant Physiol. 1983 Apr; 71(4):763-6.
Daub ME, Briggs SP. PMID: 16662903; PMCID: PMC1066118.
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PubMed Mentions:
18 Fields:
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Localization of spin labels in oat leaf protoplasts. Plant Physiol. 1982 Sep; 70(3):662-7.
Briggs SP, Haug AR, Scheffer RP. PMID: 16662553; PMCID: PMC1065748.
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PubMed Mentions:
3 Fields:
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Interaction of nitroxide spin labels with chloroplasts. Plant Physiol. 1982 Sep; 70(3):668-70.
Briggs SP, Haug AR, Scheffer RP. PMID: 16662554; PMCID: PMC1065749.
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PubMed Mentions:
1 Fields: