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Steven Briggs

TitleProfessor
InstitutionUniversity of California San Diego
DepartmentCell and Developmental Biology
Address9500 Gilman Drive #0380
La Jolla CA 92093
Phone858-534-5372
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help.
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    1. Hasan MK, Yu J, Widhopf GF, Rassenti LZ, Chen L, Shen Z, Briggs S, Neuberg DS, Kipps TJ. Wnt5a induces ROR1 to recruit DOCK2 to activate Rac1/2 in chronic lymphocytic leukemia. Blood. 2018 Apr 20. PMID: 29678828.
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    2. Mafu S, Ding Y, Murphy KM, Yaacoobi O, Addison JB, Wang Q, Shen Z, Briggs S, Bohlmann J, Castro-Falcon G, Hughes CC, Betsiashvili M, Huffaker A, Schmelz EA, Zerbe P. Discovery, Biosynthesis and Stress-Related Accumulation of Dolabradiene-Derived Defenses in Maize. Plant Physiol. 2018 Apr; 176(4):2677-2690. PMID: 29475898.
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    3. Lacal Romero J, Shen Z, Baumgardner K, Wei J, Briggs S, Firtel RA. The Dictyostelium GSK3 kinase GlkA coordinates signal relay and chemotaxis in response to growth conditions. Dev Biol. 2018 03 01; 435(1):56-72. PMID: 29355521.
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    4. Walley JW, Shen Z, McReynolds MR, Schmelz EA, Briggs S. Fungal-induced protein hyperacetylation in maize identified by acetylome profiling. Proc Natl Acad Sci U S A. 2018 Jan 02; 115(1):210-215. PMID: 29259121.
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    5. Wang JZ, Li B, Xiao Y, Ni Y, Ke H, Yang P, de Souza A, Bjornson M, He X, Shen Z, Balcke GU, Briggs S, Tissier A, Kliebenstein DJ, Dehesh K. Initiation of ER Body Formation and Indole Glucosinolate Metabolism by the Plastidial Retrograde Signaling Metabolite, MEcPP. Mol Plant. 2017 Nov 06; 10(11):1400-1416. PMID: 28965830.
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    6. Walley JW, Sartor RC, Shen Z, Schmitz RJ, Wu KJ, Urich MA, Nery JR, Smith LG, Schnable JC, Ecker JR, Briggs S. Integration of omic networks in a developmental atlas of maize. Science. 2016 Aug 19; 353(6301):814-8. PMID: 27540173.
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    7. Khanna A, Lotfi P, Chavan AJ, Montaño NM, Bolourani P, Weeks G, Shen Z, Briggs S, Pots H, Van Haastert PJ, Kortholt A, Charest PG. The small GTPases Ras and Rap1 bind to and control TORC2 activity. Sci Rep. 2016 05 13; 6:25823. PMID: 27172998.
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    8. Yu J, Chen L, Cui B, Widhopf GF, Shen Z, Wu R, Zhang L, Zhang S, Briggs S, Kipps TJ. Wnt5a induces ROR1/ROR2 heterooligomerization to enhance leukemia chemotaxis and proliferation. J Clin Invest. 2016 Feb; 126(2):585-98. PMID: 26690702; PMCID: PMC4731190.
    9. Huang H, Alvarez S, Bindbeutel R, Shen Z, Naldrett MJ, Evans BS, Briggs S, Hicks LM, Kay SA, Nusinow DA. Identification of Evening Complex Associated Proteins in Arabidopsis by Affinity Purification and Mass Spectrometry. Mol Cell Proteomics. 2016 Jan; 15(1):201-17. PMID: 26545401; PMCID: PMC4762519.
    10. Pineda G, Shen Z, de Albuquerque CP, Reynoso E, Chen J, Tu CC, Tang W, Briggs S, Zhou H, Wang JY. Proteomics studies of the interactome of RNA polymerase II C-terminal repeated domain. BMC Res Notes. 2015 Oct 29; 8:616. PMID: 26515650; PMCID: PMC4627417.
    11. Nakasaki M, Hwang Y, Xie Y, Kataria S, Gund R, Hajam EY, Samuel R, George R, Danda D, M J P, Nakamura T, Shen Z, Briggs S, Varghese S, Jamora C. The matrix protein Fibulin-5 is at the interface of tissue stiffness and inflammation in fibrosis. Nat Commun. 2015 Oct 15; 6:8574. PMID: 26469761; PMCID: PMC4634219.
    12. Walley J, Xiao Y, Wang JZ, Baidoo EE, Keasling JD, Shen Z, Briggs S, Dehesh K. Plastid-produced interorgannellar stress signal MEcPP potentiates induction of the unfolded protein response in endoplasmic reticulum. Proc Natl Acad Sci U S A. 2015 May 12; 112(19):6212-7. PMID: 25922532; PMCID: PMC4434691.
    13. Walley JW, Briggs S. Dual use of peptide mass spectra: Protein atlas and genome annotation. Curr Plant Biol. 2015 May 01; 2:21-24. PMID: 26811807.
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    14. Marcon C, Malik WA, Walley JW, Shen Z, Paschold A, Smith LG, Piepho HP, Briggs S, Hochholdinger F. A high-resolution tissue-specific proteome and phosphoproteome atlas of maize primary roots reveals functional gradients along the root axes. Plant Physiol. 2015 May; 168(1):233-46. PMID: 25780097; PMCID: PMC4424028.
    15. Chaudhary R, Atamian HS, Shen Z, Briggs S, Kaloshian I. Potato aphid salivary proteome: enhanced salivation using resorcinol and identification of aphid phosphoproteins. J Proteome Res. 2015 Apr 03; 14(4):1762-78. PMID: 25722084.
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    16. Xiong J, Todorova D, Su NY, Kim J, Lee PJ, Shen Z, Briggs S, Xu Y. Stemness factor Sall4 is required for DNA damage response in embryonic stem cells. J Cell Biol. 2015 Mar 02; 208(5):513-20. PMID: 25733712; PMCID: PMC4347641.
    17. Wang Q, Sun T, Xu J, Shen Z, Briggs S, Zhou D, Wang L. Response and adaptation of Escherichia coli to suppression of the amber stop codon. Chembiochem. 2014 Aug 18; 15(12):1744-9. PMID: 25044429; PMCID: PMC4156322.
    18. Chaudhary R, Atamian HS, Shen Z, Briggs S, Kaloshian I. GroEL from the endosymbiont Buchnera aphidicola betrays the aphid by triggering plant defense. Proc Natl Acad Sci U S A. 2014 Jun 17; 111(24):8919-24. PMID: 24927572; PMCID: PMC4066539.
    19. Almenar-Queralt A, Falzone TL, Shen Z, Lillo C, Killian RL, Arreola AS, Niederst ED, Ng KS, Kim SN, Briggs S, Williams DS, Goldstein LS. UV irradiation accelerates amyloid precursor protein (APP) processing and disrupts APP axonal transport. J Neurosci. 2014 Feb 26; 34(9):3320-39. PMID: 24573290; PMCID: PMC3935090.
    20. Widhopf GF, Cui B, Ghia EM, Chen L, Messer K, Shen Z, Briggs S, Croce CM, Kipps TJ. ROR1 can interact with TCL1 and enhance leukemogenesis in Eµ-TCL1 transgenic mice. Proc Natl Acad Sci U S A. 2014 Jan 14; 111(2):793-8. PMID: 24379361; PMCID: PMC3896194.
    21. Walley JW, Shen Z, Sartor R, Wu KJ, Osborn J, Smith LG, Briggs S. Reconstruction of protein networks from an atlas of maize seed proteotypes. Proc Natl Acad Sci U S A. 2013 Dec 03; 110(49):E4808-17. PMID: 24248366; PMCID: PMC3856832.
    22. Castellana NE, Shen Z, He Y, Walley JW, Cassidy CJ, Briggs S, Bafna V. An automated proteogenomic method uses mass spectrometry to reveal novel genes in Zea mays. Mol Cell Proteomics. 2014 Jan; 13(1):157-67. PMID: 24142994; PMCID: PMC3879611.
    23. Guo Y, Darshi M, Ma Y, Perkins GA, Shen Z, Haushalter KJ, Saito R, Chen A, Lee YS, Patel HH, Briggs S, Ellisman MH, Olefsky JM, Taylor SS. Quantitative proteomic and functional analysis of liver mitochondria from high fat diet (HFD) diabetic mice. Mol Cell Proteomics. 2013 Dec; 12(12):3744-58. PMID: 24030101; PMCID: PMC3861721.
    24. Facette MR, Shen Z, Björnsdóttir FR, Briggs S, Smith LG. Parallel proteomic and phosphoproteomic analyses of successive stages of maize leaf development. Plant Cell. 2013 Aug; 25(8):2798-812. PMID: 23933881; PMCID: PMC3784581.
    25. Qiao H, Shen Z, Huang SS, Schmitz RJ, Urich MA, Briggs S, Ecker JR. Response to perspective: "separation anxiety: an analysis of ethylene-induced cleavage of EIN2". Plant Signal Behav. 2013 Aug; 8(8). PMID: 23733051; PMCID: PMC3999072.
    26. Boggess MV, Lippolis JD, Hurkman WJ, Fagerquist CK, Briggs S, Gomes AV, Righetti PG, Bala K. The need for agriculture phenotyping: "moving from genotype to phenotype". J Proteomics. 2013 Nov 20; 93:20-39. PMID: 23563084.
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    27. Huffaker A, Pearce G, Veyrat N, Erb M, Turlings TC, Sartor R, Shen Z, Briggs S, Vaughan MM, Alborn HT, Teal PE, Schmelz EA. Plant elicitor peptides are conserved signals regulating direct and indirect antiherbivore defense. Proc Natl Acad Sci U S A. 2013 Apr 02; 110(14):5707-12. PMID: 23509266; PMCID: PMC3619339.
    28. Zhang X, Facette M, Humphries JA, Shen Z, Park Y, Sutimantanapi D, Sylvester AW, Briggs S, Smith LG. Identification of PAN2 by quantitative proteomics as a leucine-rich repeat-receptor-like kinase acting upstream of PAN1 to polarize cell division in maize. Plant Cell. 2012 Nov; 24(11):4577-89. PMID: 23175742; PMCID: PMC3531853.
    29. Kölsch V, Shen Z, Lee S, Plak K, Lotfi P, Chang J, Charest PG, Romero JL, Jeon TJ, Kortholt A, Briggs S, Firtel RA. Daydreamer, a Ras effector and GSK-3 substrate, is important for directional sensing and cell motility. Mol Biol Cell. 2013 Jan; 24(2):100-14. PMID: 23135995; PMCID: PMC3541958.
    30. Qiao H, Shen Z, Huang SS, Schmitz RJ, Urich MA, Briggs S, Ecker JR. Processing and subcellular trafficking of ER-tethered EIN2 control response to ethylene gas. Science. 2012 Oct 19; 338(6105):390-3. PMID: 22936567; PMCID: PMC3523706.
    31. Rasala BA, Lee PA, Shen Z, Briggs S, Mendez M, Mayfield SP. Robust expression and secretion of Xylanase1 in Chlamydomonas reinhardtii by fusion to a selection gene and processing with the FMDV 2A peptide. PLoS One. 2012; 7(8):e43349. PMID: 22937037; PMCID: PMC3427385.
    32. Jones CS, Luong T, Hannon M, Tran M, Gregory JA, Shen Z, Briggs S, Mayfield SP. Heterologous expression of the C-terminal antigenic domain of the malaria vaccine candidate Pfs48/45 in the green algae Chlamydomonas reinhardtii. Appl Microbiol Biotechnol. 2013 Mar; 97(5):1987-95. PMID: 22592550.
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    33. Parrish AR, She X, Xiang Z, Coin I, Shen Z, Briggs S, Dillin A, Wang L. Expanding the genetic code of Caenorhabditis elegans using bacterial aminoacyl-tRNA synthetase/tRNA pairs. ACS Chem Biol. 2012 Jul 20; 7(7):1292-302. PMID: 22554080; PMCID: PMC3401359.
    34. Dost B, Bandeira N, Li X, Shen Z, Briggs S, Bafna V. Accurate mass spectrometry based protein quantification via shared peptides. J Comput Biol. 2012 Apr; 19(4):337-48. PMID: 22414154; PMCID: PMC3317402.
    35. Teachenor R, Beck K, Wright LY, Shen Z, Briggs S, Murre C. Biochemical and phosphoproteomic analysis of the helix-loop-helix protein E47. Mol Cell Biol. 2012 May; 32(9):1671-82. PMID: 22354994; PMCID: PMC3347234.
    36. Jones AM, Aebersold R, Ahrens CH, Apweiler R, Baerenfaller K, Baker M, Bendixen E, Briggs S, Brownridge P, Brunner E, Daube M, Deutsch EW, Grossniklaus U, Heazlewood J, Hengartner MO, Hermjakob H, Jovanovic M, Lawless C, Lochnit G, Martens L, Ravnsborg C, Schrimpf SP, Shim YH, Subasic D, Tholey A, Wijk Kv, Mering Cv, Weiss M, Zheng X. The HUPO initiative on Model Organism Proteomes, iMOP. Proteomics. 2012 Feb; 12(3):340-5. PMID: 22290800.
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    37. Johnson DB, Xu J, Shen Z, Takimoto JK, Schultz MD, Schmitz RJ, Xiang Z, Ecker JR, Briggs S, Wang L. RF1 knockout allows ribosomal incorporation of unnatural amino acids at multiple sites. Nat Chem Biol. 2011 Sep 18; 7(11):779-86. PMID: 21926996; PMCID: PMC3201715.
    38. Lacey VK, Parrish AR, Han S, Shen Z, Briggs S, Ma Y, Wang L. A fluorescent reporter of the phosphorylation status of the substrate protein STAT3. Angew Chem Int Ed Engl. 2011 Sep 05; 50(37):8692-6. PMID: 21805546; PMCID: PMC3197789.
    39. Kicka S, Shen Z, Annesley SJ, Fisher PR, Lee S, Briggs S, Firtel RA. The LRRK2-related Roco kinase Roco2 is regulated by Rab1A and controls the actin cytoskeleton. Mol Biol Cell. 2011 Jul 01; 22(13):2198-211. PMID: 21551065; PMCID: PMC3128523.
    40. Joshi HJ, Hirsch-Hoffmann M, Baerenfaller K, Gruissem W, Baginsky S, Schmidt R, Schulze WX, Sun Q, van Wijk KJ, Egelhofer V, Wienkoop S, Weckwerth W, Bruley C, Rolland N, Toyoda T, Nakagami H, Jones AM, Briggs S, Castleden I, Tanz SK, Millar AH, Heazlewood JL. MASCP Gator: an aggregation portal for the visualization of Arabidopsis proteomics data. Plant Physiol. 2011 Jan; 155(1):259-70. PMID: 21075962; PMCID: PMC3075751.
    41. Keil JM, Shen Z, Briggs S, Patrick GN. Regulation of STIM1 and SOCE by the ubiquitin-proteasome system (UPS). PLoS One. 2010 Oct 18; 5(10):e13465. PMID: 20976103; PMCID: PMC2956693.
    42. Moretto-Zita M, Jin H, Shen Z, Zhao T, Briggs S, Xu Y. Phosphorylation stabilizes Nanog by promoting its interaction with Pin1. Proc Natl Acad Sci U S A. 2010 Jul 27; 107(30):13312-7. PMID: 20622153; PMCID: PMC2922169.
    43. Bellafiore S, Briggs S. Nematode effectors and plant responses to infection. Curr Opin Plant Biol. 2010 Aug; 13(4):442-8. PMID: 20542724.
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    44. O'Brien RN, Shen Z, Tachikawa K, Lee PA, Briggs S. Quantitative proteome analysis of pluripotent cells by iTRAQ mass tagging reveals post-transcriptional regulation of proteins required for ES cell self-renewal. Mol Cell Proteomics. 2010 Oct; 9(10):2238-51. PMID: 20513800; PMCID: PMC2953917.
    45. Charest PG, Shen Z, Lakoduk A, Sasaki AT, Briggs S, Firtel RA. A Ras signaling complex controls the RasC-TORC2 pathway and directed cell migration. Dev Cell. 2010 May 18; 18(5):737-49. PMID: 20493808; PMCID: PMC2893887.
    46. Lee S, Shen Z, Robinson DN, Briggs S, Firtel RA. Involvement of the cytoskeleton in controlling leading-edge function during chemotaxis. Mol Biol Cell. 2010 Jun 01; 21(11):1810-24. PMID: 20375144; PMCID: PMC2877640.
    47. Garmire LX, Shen Z, Briggs S, Yeo G, Subramaniam S, Glass C. Regulatory network of microRNAs in RAW 264.7 macrophage cells. Conf Proc IEEE Eng Med Biol Soc. 2010; 2010:6198-201. PMID: 21097158.
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    48. Andreyev AY, Shen Z, Guan Z, Ryan A, Fahy E, Subramaniam S, Raetz CR, Briggs S, Dennis EA. Application of proteomic marker ensembles to subcellular organelle identification. Mol Cell Proteomics. 2010 Feb; 9(2):388-402. PMID: 19884172; PMCID: PMC2830848.
    49. Abe N, Almenar-Queralt A, Lillo C, Shen Z, Lozach J, Briggs S, Williams DS, Goldstein LS, Cavalli V. Sunday driver interacts with two distinct classes of axonal organelles. J Biol Chem. 2009 Dec 11; 284(50):34628-39. PMID: 19801628; PMCID: PMC2787325.
    50. Castellana NE, Payne SH, Shen Z, Stanke M, Bafna V, Briggs S. Discovery and revision of Arabidopsis genes by proteogenomics. Proc Natl Acad Sci U S A. 2008 Dec 30; 105(52):21034-8. PMID: 19098097.
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    51. Para A, Krischke M, Merlot S, Shen Z, Oberholzer M, Lee S, Briggs S, Firtel RA. Dictyostelium Dock180-related RacGEFs regulate the actin cytoskeleton during cell motility. Mol Biol Cell. 2009 Jan; 20(2):699-707. PMID: 19037099; PMCID: PMC2626555.
    52. Bellafiore S, Shen Z, Rosso MN, Abad P, Shih P, Briggs S. Direct identification of the Meloidogyne incognita secretome reveals proteins with host cell reprogramming potential. PLoS Pathog. 2008 Oct; 4(10):e1000192. PMID: 18974830; PMCID: PMC2568823.
    53. Bischof LJ, Kao CY, Los FC, Gonzalez MR, Shen Z, Briggs S, van der Goot FG, Aroian RV. Activation of the unfolded protein response is required for defenses against bacterial pore-forming toxin in vivo. PLoS Pathog. 2008 Oct; 4(10):e1000176. PMID: 18846208; PMCID: PMC2553261.
    54. Du F, Edwards K, Shen Z, Sun B, De Lozanne A, Briggs S, Firtel RA. Regulation of contractile vacuole formation and activity in Dictyostelium. EMBO J. 2008 Aug 06; 27(15):2064-76. PMID: 18636095; PMCID: PMC2516880.
    55. Frank AM, Bandeira N, Shen Z, Tanner S, Briggs S, Smith RD, Pevzner PA. Clustering millions of tandem mass spectra. J Proteome Res. 2008 Jan; 7(1):113-22. PMID: 18067247; PMCID: PMC2533155.
    56. Tanner S, Payne SH, Dasari S, Shen Z, Wilmarth PA, David LL, Loomis WF, Briggs S, Bafna V. Accurate annotation of peptide modifications through unrestrictive database search. J Proteome Res. 2008 Jan; 7(1):170-81. PMID: 18034453.
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    57. Tanner S, Shen Z, Ng J, Florea L, Guigó R, Briggs S, Bafna V. Improving gene annotation using peptide mass spectrometry. Genome Res. 2007 Feb; 17(2):231-9. PMID: 17189379; PMCID: PMC1781355.
    58. Rasala BA, Orjalo AV, Shen Z, Briggs S, Forbes DJ. ELYS is a dual nucleoporin/kinetochore protein required for nuclear pore assembly and proper cell division. Proc Natl Acad Sci U S A. 2006 Nov 21; 103(47):17801-6. PMID: 17098863; PMCID: PMC1635652.
    59. Tachikawa K, Briggs S. Targeting the human genome. Curr Opin Biotechnol. 2006 Dec; 17(6):659-65. PMID: 17085035.
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    60. Singer T, Fan Y, Chang HS, Zhu T, Hazen SP, Briggs S. A high-resolution map of Arabidopsis recombinant inbred lines by whole-genome exon array hybridization. PLoS Genet. 2006 Sep 15; 2(9):e144. PMID: 17044735; PMCID: PMC1564425.
    61. Orjalo AV, Arnaoutov A, Shen Z, Boyarchuk Y, Zeitlin SG, Fontoura B, Briggs S, Dasso M, Forbes DJ. The Nup107-160 nucleoporin complex is required for correct bipolar spindle assembly. Mol Biol Cell. 2006 Sep; 17(9):3806-18. PMID: 16807356.
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    62. Wall JA, Wei J, Ly M, Belmont P, Martindale JJ, Tran D, Sun J, Chen WJ, Yu W, Oeller P, Briggs S, Gustafsson AB, Sayen MR, Gottlieb RA, Glembotski CC. Alterations in oxidative phosphorylation complex proteins in the hearts of transgenic mice that overexpress the p38 MAP kinase activator, MAP kinase kinase 6. Am J Physiol Heart Circ Physiol. 2006 Nov; 291(5):H2462-72. PMID: 16766635.
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    63. Shen Z, Wang MW, Briggs S. Use of high-throughput LC-MS/MS proteomics technologies in drug discovery. Drug Discov Today Technol. 2006; 3(3):301-6. PMID: 24980532.
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    64. Briggs S, Singer T. Genetic networks. Plant Physiol. 2005 Jun; 138(2):542-4. PMID: 15955909; PMCID: PMC1150365.
    65. Güimil S, Chang HS, Zhu T, Sesma A, Osbourn A, Roux C, Ioannidis V, Oakeley EJ, Docquier M, Descombes P, Briggs S, Paszkowski U. Comparative transcriptomics of rice reveals an ancient pattern of response to microbial colonization. Proc Natl Acad Sci U S A. 2005 May 31; 102(22):8066-70. PMID: 15905328; PMCID: PMC1142390.
    66. Tachikawa K, Schröder O, Frey G, Briggs S, Sera T. Regulation of the endogenous VEGF-A gene by exogenous designed regulatory proteins. Proc Natl Acad Sci U S A. 2004 Oct 19; 101(42):15225-30. PMID: 15475575; PMCID: PMC523457.
    67. Multani DS, Briggs S, Chamberlin MA, Blakeslee JJ, Murphy AS, Johal GS. Loss of an MDR transporter in compact stalks of maize br2 and sorghum dw3 mutants. Science. 2003 Oct 03; 302(5642):81-4. PMID: 14526073.
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    68. Guan X, Stege J, Kim M, Dahmani Z, Fan N, Heifetz P, Barbas CF, Briggs S. Heritable endogenous gene regulation in plants with designed polydactyl zinc finger transcription factors. Proc Natl Acad Sci U S A. 2002 Oct 01; 99(20):13296-301. PMID: 12271125; PMCID: PMC130627.
    69. Paszkowski U, Kroken S, Roux C, Briggs S. Rice phosphate transporters include an evolutionarily divergent gene specifically activated in arbuscular mycorrhizal symbiosis. Proc Natl Acad Sci U S A. 2002 Oct 01; 99(20):13324-9. PMID: 12271140; PMCID: PMC130632.
    70. Guttman A, Ronai Z, Barta C, Hou YM, Sasvari-Szekely M, Wang X, Briggs S. Membrane-mediated ultrafast restriction digestion and subsequent rapid gel microchip electrophoresis of DNA. Electrophoresis. 2002 May; 23(10):1524-30. PMID: 12116164.
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    71. Goff SA, Ricke D, Lan TH, Presting G, Wang R, Dunn M, Glazebrook J, Sessions A, Oeller P, Varma H, Hadley D, Hutchison D, Martin C, Katagiri F, Lange BM, Moughamer T, Xia Y, Budworth P, Zhong J, Miguel T, Paszkowski U, Zhang S, Colbert M, Sun WL, Chen L, Cooper B, Park S, Wood TC, Mao L, Quail P, Wing R, Dean R, Yu Y, Zharkikh A, Shen R, Sahasrabudhe S, Thomas A, Cannings R, Gutin A, Pruss D, Reid J, Tavtigian S, Mitchell J, Eldredge G, Scholl T, Miller RM, Bhatnagar S, Adey N, Rubano T, Tusneem N, Robinson R, Feldhaus J, Macalma T, Oliphant A, Briggs S. A draft sequence of the rice genome (Oryza sativa L. ssp. japonica). Science. 2002 Apr 05; 296(5565):92-100. PMID: 11935018.
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