Maryann Martone

Title(s)Recall Faculty, Neurosciences
SchoolVc-health Sciences-schools
Address9500 Gilman Drive #
La Jolla CA 92093
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    Collapse Research 
    Collapse Research Activities and Funding
    SPARC Engagement Plan with the Common Fund Data Ecosystem
    NIH OT2OD032619Sep 23, 2021 - Sep 22, 2022
    Role: Principal Investigator
    K-CORE: Curation and Knowledge Management for SPARC
    NIH OT2OD030541Sep 4, 2020 - Sep 3, 2022
    Role: Principal Investigator
    A Community Resource for Single Cell Data in the Brain
    NIH U24MH114827Sep 20, 2017 - Jun 30, 2022
    Role: Co-Principal Investigator
    OPERATION, SUPPORT AND STRATEGIC ENHANCEMENT OF THE NEUROSCIENCE INFORMATION FRAMEWORK
    NIH U24DA039832Apr 1, 2015 - Mar 31, 2018
    Role: Principal Investigator
    dkNET Coordinating Unit: An information network for FAIR resources and data
    NIH U24DK097771Dec 1, 2012 - Jun 30, 2023
    Role: Principal Investigator
    Creation of An Aging Knowledge Environment Through Enhancement of the NIF
    NIH R03AG043018Aug 15, 2012 - Jul 31, 2014
    Role: Principal Investigator
    SMA EDUCATION AND OUTREACH IN THE NORTHEAST
    NIH H75DD000732Sep 15, 2010 - Sep 14, 2011
    Role: Principal Investigator
    Support of and Extensions to the Cell Image Library
    NIH R01GM082949Sep 30, 2007 - Jun 30, 2021
    Role: Principal Investigator
    Ontology-based multiscale investigation of human neurological disease models
    NIH R01NS058296Apr 1, 2007 - Mar 31, 2013
    Role: Principal Investigator
    DEVELOPMENT OF A 3-D CELL-CENTERED NEURONAL DATABASE
    NIH R01DA016602Sep 30, 1997 - Mar 31, 2010
    Role: Principal Investigator
    IVEM and Image Analysis Resource
    NIH P41RR004050Dec 12, 1988 - Mar 31, 2014
    Role: Co-Investigator

    Collapse Bibliographic 
    Collapse Publications
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. A decade of GigaScience: the importance of community organizations for open and FAIR efforts in neuroinformatics. Gigascience. 2022 06 14; 11. Martone ME. PMID: 35701370; PMCID: PMC9197677.
      View in: PubMed   Mentions:    Fields:    
    2. The Neuron Phenotype Ontology: A FAIR Approach to Proposing and Classifying Neuronal Types. Neuroinformatics. 2022 07; 20(3):793-809. Gillespie TH, Tripathy SJ, Sy MF, Martone ME, Hill SL. PMID: 35267146; PMCID: PMC9547803.
      View in: PubMed   Mentions: 1     Fields:    
    3. Is Neuroscience FAIR? A Call for Collaborative Standardisation of Neuroscience Data. Neuroinformatics. 2022 04; 20(2):507-512. Poline JB, Kennedy DN, Sommer FT, Ascoli GA, Van Essen DC, Ferguson AR, Grethe JS, Hawrylycz MJ, Thompson PM, Poldrack RA, Ghosh SS, Keator DB, Athey TL, Vogelstein JT, Mayberg HS, Martone ME. PMID: 35061216; PMCID: PMC9300762.
      View in: PubMed   Mentions:    Fields:    
    4. Correction to: A Standards Organization for Open and FAIR Neuroscience: the International Neuroinformatics Coordinating Facility. Neuroinformatics. 2022 Jan; 20(1):37-38. Abrams MB, Bjaalie JG, Das S, Egan GF, Ghosh SS, Goscinski WJ, Grethe JS, Kotaleski JH, Ho ETW, Kennedy DN, Lanyon LJ, Leergaard TB, Mayberg HS, Milanesi L, Moucek R, Poline JB, Roy PK, Strother SC, Tang TB, Tiesinga P, Wachtler T, Wójcik DK, Martone ME. PMID: 33851344; PMCID: PMC9629304.
      View in: PubMed   Mentions: 1     Fields:    
    5. International data governance for neuroscience. Neuron. 2022 02 16; 110(4):600-612. Eke DO, Bernard A, Bjaalie JG, Chavarriaga R, Hanakawa T, Hannan AJ, Hill SL, Martone ME, McMahon A, Ruebel O, Crook S, Thiels E, Pestilli F. PMID: 34914921; PMCID: PMC8857067.
      View in: PubMed   Mentions:    Fields:    
    6. Promoting FAIR Data Through Community-driven Agile Design: the Open Data Commons for Spinal Cord Injury (odc-sci.org). Neuroinformatics. 2022 01; 20(1):203-219. Torres-Espín A, Almeida CA, Chou A, Huie JR, Chiu M, Vavrek R, Sacramento J, Orr MB, Gensel JC, Grethe JS, Martone ME, Fouad K, Ferguson AR, STREET-FAIR Workshop Participants. PMID: 34347243; PMCID: PMC9537193.
      View in: PubMed   Mentions: 1     Fields:    
    7. Using Cloud-Based Resources for Neuroimaging Research: A Practical Approach. NAM Perspect. 2021; 2021. Barch DM, Norris SMP, Martone ME. PMID: 34611606; PMCID: PMC8486426.
      View in: PubMed   Mentions:
    8. A tool for assessing alignment of biomedical data repositories with open, FAIR, citation and trustworthy principles. PLoS One. 2021; 16(7):e0253538. Murphy F, Bar-Sinai M, Martone ME. PMID: 34242248; PMCID: PMC8270168.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    9. The SPARC DRC: Building a Resource for the Autonomic Nervous System Community. Front Physiol. 2021; 12:693735. Osanlouy M, Bandrowski A, de Bono B, Brooks D, Cassarà AM, Christie R, Ebrahimi N, Gillespie T, Grethe JS, Guercio LA, Heal M, Lin M, Kuster N, Martone ME, Neufeld E, Nickerson DP, Soltani EG, Tappan S, Wagenaar JB, Zhuang K, Hunter PJ. PMID: 34248680; PMCID: PMC8265045.
      View in: PubMed   Mentions: 5  
    10. Antibody Watch: Text mining antibody specificity from the literature. PLoS Comput Biol. 2021 05; 17(5):e1008967. Hsu CN, Chang CH, Poopradubsil T, Lo A, William KA, Lin KW, Bandrowski A, Ozyurt IB, Grethe JS, Martone ME. PMID: 34043624; PMCID: PMC8189493.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansAnimals
    11. Integration of evidence across human and model organism studies: A meeting report. Genes Brain Behav. 2021 Apr 23; e12738. Palmer RHC, Johnson EC, Won H, Polimanti R, Kapoor M, Chitre A, Bogue MA, Benca-Bachman CE, Parker CC, Verma A, Reynolds T, Ernst J, Bray M, Kwon SB, Lai D, Quach BC, Gaddis NC, Saba L, Chen H, Hawrylycz M, Zhang S, Zhou Y, Mahaffey S, Fischer C, Sanchez-Roige S, Bandrowski A, Lu Q, Shen L, Philip V, Gelernter J, Bierut LJ, Hancock DB, Edenberg HJ, Johnson EO, Nestler EJ, Barr PB, Prins P, Smith DJ, Akbarian S, Thorgeirsson T, Walton D, Baker E, Jacobson D, Palmer AA, Miles M, Chesler EJ, Emerson J, Agrawal A, Martone M, Williams RW. PMID: 33893716; PMCID: PMC8365690.
      View in: PubMed   Mentions: 2     Fields:    
    12. A Standards Organization for Open and FAIR Neuroscience: the International Neuroinformatics Coordinating Facility. Neuroinformatics. 2022 01; 20(1):25-36. Abrams MB, Bjaalie JG, Das S, Egan GF, Ghosh SS, Goscinski WJ, Grethe JS, Kotaleski JH, Ho ETW, Kennedy DN, Lanyon LJ, Leergaard TB, Mayberg HS, Milanesi L, Moucek R, Poline JB, Roy PK, Strother SC, Tang TB, Tiesinga P, Wachtler T, Wójcik DK, Martone ME. PMID: 33506383; PMCID: PMC9036053.
      View in: PubMed   Mentions: 8     Fields:    
    13. The Rigor and Transparency Index Quality Metric for Assessing Biological and Medical Science Methods. iScience. 2020 Nov 20; 23(11):101698. Menke J, Roelandse M, Ozyurt B, Martone M, Bandrowski A. PMID: 33196023; PMCID: PMC7644557.
      View in: PubMed   Mentions: 9  
    14. The TRUST Principles for digital repositories. Sci Data. 2020 05 14; 7(1):144. Lin D, Crabtree J, Dillo I, Downs RR, Edmunds R, Giaretta D, De Giusti M, L'Hours H, Hugo W, Jenkyns R, Khodiyar V, Martone ME, Mokrane M, Navale V, Petters J, Sierman B, Sokolova DV, Stockhause M, Westbrook J. PMID: 32409645; PMCID: PMC7224370.
      View in: PubMed   Mentions: 14     Fields:    
    15. FAIR SCI Ahead: The Evolution of the Open Data Commons for Pre-Clinical Spinal Cord Injury Research. J Neurotrauma. 2020 03 15; 37(6):831-838. Fouad K, Bixby JL, Callahan A, Grethe JS, Jakeman LB, Lemmon VP, Magnuson DSK, Martone ME, Nielson JL, Schwab JM, Taylor-Burds C, Tetzlaff W, Torres-Espin A, Ferguson AR, FAIR-SCI Ahead Workshop Participants. PMID: 31608767; PMCID: PMC7071068.
      View in: PubMed   Mentions: 11     Fields:    Translation:HumansAnimals
    16. A data citation roadmap for scholarly data repositories. Sci Data. 2019 04 10; 6(1):28. Fenner M, Crosas M, Grethe JS, Kennedy D, Hermjakob H, Rocca-Serra P, Durand G, Berjon R, Karcher S, Martone M, Clark T. PMID: 30971690; PMCID: PMC6472386.
      View in: PubMed   Mentions: 17     Fields:    
    17. Addendum: The FAIR Guiding Principles for scientific data management and stewardship. Sci Data. 2019 03 19; 6(1):6. Wilkinson MD, Dumontier M, Jan Aalbersberg I, Appleton G, Axton M, Baak A, Blomberg N, Boiten JW, da Silva Santos LB, Bourne PE, Bouwman J, Brookes AJ, Clark T, Crosas M, Dillo I, Dumon O, Edmunds S, Evelo CT, Finkers R, Gonzalez-Beltran A, Gray AJG, Groth P, Goble C, Grethe JS, Heringa J, Hoen PAC', Hooft R, Kuhn T, Kok R, Kok J, Lusher SJ, Martone ME, Mons A, Packer AL, Persson B, Rocca-Serra P, Roos M, van Schaik R, Sansone SA, Schultes E, Sengstag T, Slater T, Strawn G, Swertz MA, Thompson M, van der Lei J, van Mulligen E, Waagmeester A, Wittenburg P, Wolstencroft K, Zhao J, Mons B. PMID: 30890711; PMCID: PMC6427092.
      View in: PubMed   Mentions: 16     Fields:    
    18. Everything Matters: The ReproNim Perspective on Reproducible Neuroimaging. Front Neuroinform. 2019; 13:1. Kennedy DN, Abraham SA, Bates JF, Crowley A, Ghosh S, Gillespie T, Goncalves M, Grethe JS, Halchenko YO, Hanke M, Haselgrove C, Hodge SM, Jarecka D, Kaczmarzyk J, Keator DB, Meyer K, Martone ME, Padhy S, Poline JB, Preuss N, Sincomb T, Travers M. PMID: 30792636; PMCID: PMC6374302.
      View in: PubMed   Mentions: 16  
    19. Incidences of problematic cell lines are lower in papers that use RRIDs to identify cell lines. Elife. 2019 01 29; 8. Babic Z, Capes-Davis A, Martone ME, Bairoch A, Ozyurt IB, Gillespie TH, Bandrowski AE. PMID: 30693867; PMCID: PMC6351100.
      View in: PubMed   Mentions: 11     Fields:    Translation:HumansCells
    20. Improving transparency and scientific rigor in academic publishing. J Neurosci Res. 2019 04; 97(4):377-390. Prager EM, Chambers KE, Plotkin JL, McArthur DL, Bandrowski AE, Bansal N, Martone ME, Bergstrom HC, Bespalov A, Graf C. PMID: 30506706.
      View in: PubMed   Mentions: 11     Fields:    Translation:Humans
    21. Improving transparency and scientific rigor in academic publishing. Brain Behav. 2019 01; 9(1):e01141. Prager EM, Chambers KE, Plotkin JL, McArthur DL, Bandrowski AE, Bansal N, Martone ME, Bergstrom HC, Bespalov A, Graf C. PMID: 30506879; PMCID: PMC6346653.
      View in: PubMed   Mentions: 7     Fields:    Translation:Humans
    22. Improving transparency and scientific rigor in academic publishing. Cancer Rep (Hoboken). 2019 02; 2(1):e1150. Prager EM, Chambers KE, Plotkin JL, McArthur DL, Bandrowski AE, Bansal N, Martone ME, Bergstrom HC, Bespalov A, Graf C. PMID: 32721132; PMCID: PMC7941525.
      View in: PubMed   Mentions: 2     Fields:    Translation:Humans
    23. A data citation roadmap for scientific publishers. Sci Data. 2018 11 20; 5:180259. Cousijn H, Kenall A, Ganley E, Harrison M, Kernohan D, Lemberger T, Murphy F, Polischuk P, Taylor S, Martone M, Clark T. PMID: 30457573; PMCID: PMC6244190.
      View in: PubMed   Mentions: 25     Fields:    
    24. Uniform resolution of compact identifiers for biomedical data. Sci Data. 2018 05 08; 5:180029. Wimalaratne SM, Juty N, Kunze J, Janée G, McMurry JA, Beard N, Jimenez R, Grethe JS, Hermjakob H, Martone ME, Clark T. PMID: 29737976; PMCID: PMC5944906.
      View in: PubMed   Mentions: 22     Fields:    
    25. Data sharing in psychology. Am Psychol. 2018 Feb-Mar; 73(2):111-125. Martone ME, Garcia-Castro A, VandenBos GR. PMID: 29481105; PMCID: PMC5920518.
      View in: PubMed   Mentions: 13     Fields:    Translation:Humans
    26. RRIDs: A Simple Step toward Improving Reproducibility through Rigor and Transparency of Experimental Methods. Neuron. 2016 05 04; 90(3):434-6. Bandrowski AE, Martone ME. PMID: 27151636; PMCID: PMC5854161.
      View in: PubMed   Mentions: 21     Fields:    Translation:Humans
    27. The Resource Identification Initiative: A Cultural Shift in Publishing. Neuroinformatics. 2016 Apr; 14(2):169-82. Bandrowski A, Brush M, Grethe JS, Haendel MA, Kennedy DN, Hill S, Hof PR, Martone ME, Pols M, Tan SS, Washington N, Zudilova-Seinstra E, Vasilevsky N, RINL Resource Identification Initiative. PMID: 26589523; PMCID: PMC5072392.
      View in: PubMed   Mentions: 17     Fields:    Translation:Humans
    28. The FAIR Guiding Principles for scientific data management and stewardship. Sci Data. 2016 Mar 15; 3:160018. Wilkinson MD, Dumontier M, Aalbersberg IJ, Appleton G, Axton M, Baak A, Blomberg N, Boiten JW, da Silva Santos LB, Bourne PE, Bouwman J, Brookes AJ, Clark T, Crosas M, Dillo I, Dumon O, Edmunds S, Evelo CT, Finkers R, Gonzalez-Beltran A, Gray AJ, Groth P, Goble C, Grethe JS, Heringa J, 't Hoen PA, Hooft R, Kuhn T, Kok R, Kok J, Lusher SJ, Martone ME, Mons A, Packer AL, Persson B, Rocca-Serra P, Roos M, van Schaik R, Sansone SA, Schultes E, Sengstag T, Slater T, Strawn G, Swertz MA, Thompson M, van der Lei J, van Mulligen E, Velterop J, Waagmeester A, Wittenburg P, Wolstencroft K, Zhao J, Mons B. PMID: 26978244; PMCID: PMC4792175.
      View in: PubMed   Mentions: 1738     Fields:    
    29. Resource Disambiguator for the Web: Extracting Biomedical Resources and Their Citations from the Scientific Literature. PLoS One. 2016; 11(1):e0146300. Ozyurt IB, Grethe JS, Martone ME, Bandrowski AE. PMID: 26730820; PMCID: PMC5156472.
      View in: PubMed   Mentions: 12     Fields:    Translation:Humans
    30. The Resource Identification Initiative: A Cultural Shift in Publishing. J Comp Neurol. 2016 Jan 01; 524(1):8-22. Bandrowski A, Brush M, Grethe JS, Haendel MA, Kennedy DN, Hill S, Hof PR, Martone ME, Pols M, Tan SC, Washington N, Zudilova-Seinstra E, Vasilevsky N. PMID: 26599696; PMCID: PMC4684178.
      View in: PubMed   Mentions: 17     Fields:    Translation:Animals
    31. The Resource Identification Initiative: a cultural shift in publishing. Brain Behav. 2016 01; 6(1):e00417. Bandrowski A, Brush M, Grethe JS, Haendel MA, Kennedy DN, Hill S, Hof PR, Martone ME, Pols M, Tan SC, Washington N, Zudilova-Seinstra E, Vasilevsky N, RINL Resource Identification Initiative. PMID: 27110440; PMCID: PMC4834942.
      View in: PubMed   Mentions: 17     Fields:    Translation:Humans
    32. The NIDDK Information Network: A Community Portal for Finding Data, Materials, and Tools for Researchers Studying Diabetes, Digestive, and Kidney Diseases. PLoS One. 2015; 10(9):e0136206. Whetzel PL, Grethe JS, Banks DE, Martone ME. PMID: 26393351; PMCID: PMC4578941.
      View in: PubMed   Mentions: 6     Fields:    Translation:HumansAnimals
    33. The Resource Identification Initiative: A cultural shift in publishing. F1000Res. 2015; 4:134. Bandrowski A, Brush M, Grethe JS, Haendel MA, Kennedy DN, Hill S, Hof PR, Martone ME, Pols M, Tan S, Washington N, Zudilova-Seinstra E, Vasilevsky N, Resource Identification Initiative Members are listed here: https://www.force11.org/node/4463/member. PMID: 26594330; PMCID: PMC4648211.
      View in: PubMed   Mentions: 27     Fields:    
    34. Early experiences in developing and managing the neuroscience gateway. Concurr Comput. 2015 Feb 01; 27(2):473-488. Sivagnanam S, Majumdar A, Yoshimoto K, Astakhov V, Bandrowski A, Martone M, Carnevale NT. PMID: 26523124; PMCID: PMC4624199.
      View in: PubMed   Mentions: 7  
    35. Comparative analysis of knowledge representation and reasoning requirements across a range of life sciences textbooks. J Biomed Semantics. 2014; 5:51. Chaudhri VK, Elenius D, Goldenkranz A, Gong A, Martone ME, Webb W, Yorke-Smith N. PMID: 25785183; PMCID: PMC4362633.
      View in: PubMed   Mentions:    Fields:    
    36. Big data from small data: data-sharing in the 'long tail' of neuroscience. Nat Neurosci. 2014 Nov; 17(11):1442-7. Ferguson AR, Nielson JL, Cragin MH, Bandrowski AE, Martone ME. PMID: 25349910; PMCID: PMC4728080.
      View in: PubMed   Mentions: 69     Fields:    Translation:HumansAnimals
    37. Interdisciplinary perspectives on the development, integration, and application of cognitive ontologies. Front Neuroinform. 2014; 8:62. Hastings J, Frishkoff GA, Smith B, Jensen M, Poldrack RA, Lomax J, Bandrowski A, Imam F, Turner JA, Martone ME. PMID: 24999329; PMCID: PMC4064452.
      View in: PubMed   Mentions: 8  
    38. Neuroanatomical domain of the foundational model of anatomy ontology. J Biomed Semantics. 2014 Jan 08; 5(1):1. Nichols BN, Mejino JL, Detwiler LT, Nilsen TT, Martone ME, Turner JA, Rubin DL, Brinkley JF. PMID: 24398054; PMCID: PMC3944952.
      View in: PubMed   Mentions: 7     Fields:    
    39. Brain and Behavior: we want you to share your data. Brain Behav. 2014 Jan; 4(1):1-3. Martone ME. PMID: 24653948; PMCID: PMC3937699.
      View in: PubMed   Mentions: 1     Fields:    
    40. The Gene Ontology (GO) Cellular Component Ontology: integration with SAO (Subcellular Anatomy Ontology) and other recent developments. J Biomed Semantics. 2013 Oct 07; 4(1):20. Roncaglia P, Martone ME, Hill DP, Berardini TZ, Foulger RE, Imam FT, Drabkin H, Mungall CJ, Lomax J. PMID: 24093723; PMCID: PMC3852282.
      View in: PubMed   Mentions: 10     Fields:    
    41. Connecting connectomes. Neuroinformatics. 2013 Oct; 11(4):389-92. Martone ME, Ascoli GA. PMID: 24096724; PMCID: PMC3858843.
      View in: PubMed   Mentions: 3     Fields:    Translation:HumansCells
    42. NeuroLex.org: an online framework for neuroscience knowledge. Front Neuroinform. 2013; 7:18. Larson SD, Martone ME. PMID: 24009581; PMCID: PMC3757470.
      View in: PubMed   Mentions: 33  
    43. A knowledge based approach to matching human neurodegenerative disease and animal models. Front Neuroinform. 2013; 7:7. Maynard SM, Mungall CJ, Lewis SE, Imam FT, Martone ME. PMID: 23717278; PMCID: PMC3653101.
      View in: PubMed   Mentions: 4  
    44. A comparative antibody analysis of pannexin1 expression in four rat brain regions reveals varying subcellular localizations. Front Pharmacol. 2013; 4:6. Cone AC, Ambrosi C, Scemes E, Martone ME, Sosinsky GE. PMID: 23390418; PMCID: PMC3565217.
      View in: PubMed   Mentions: 23  
    45. The cell: an image library-CCDB: a curated repository of microscopy data. Nucleic Acids Res. 2013 Jan; 41(Database issue):D1241-50. Orloff DN, Iwasa JH, Martone ME, Ellisman MH, Kane CM. PMID: 23203874; PMCID: PMC3531121.
      View in: PubMed   Mentions: 22     Fields:    Translation:Cells
    46. Electron tomographic analysis of synaptic ultrastructure. J Comp Neurol. 2012 Aug 15; 520(12):2697-711. Burette AC, Lesperance T, Crum J, Martone M, Volkmann N, Ellisman MH, Weinberg RJ. PMID: 22684938; PMCID: PMC3856703.
      View in: PubMed   Mentions: 37     Fields:    Translation:AnimalsCells
    47. Biological imaging software tools. Nat Methods. 2012 Jun 28; 9(7):697-710. Eliceiri KW, Berthold MR, Goldberg IG, Ibáñez L, Manjunath BS, Martone ME, Murphy RF, Peng H, Plant AL, Roysam B, Stuurman N, Stuurmann N, Swedlow JR, Tomancak P, Carpenter AE. PMID: 22743775; PMCID: PMC3659807.
      View in: PubMed   Mentions: 178     Fields:    
    48. Development and use of Ontologies Inside the Neuroscience Information Framework: A Practical Approach. Front Genet. 2012; 3:111. Imam FT, Larson SD, Bandrowski A, Grethe JS, Gupta A, Martone ME. PMID: 22737162; PMCID: PMC3381282.
      View in: PubMed   Mentions: 25  
    49. An ontological approach to describing neurons and their relationships. Front Neuroinform. 2012; 6:15. Hamilton DJ, Shepherd GM, Martone ME, Ascoli GA. PMID: 22557965; PMCID: PMC3338117.
      View in: PubMed   Mentions: 22  
    50. Method: automatic segmentation of mitochondria utilizing patch classification, contour pair classification, and automatically seeded level sets. BMC Bioinformatics. 2012 Feb 09; 13:29. Giuly RJ, Martone ME, Ellisman MH. PMID: 22321695; PMCID: PMC3293777.
      View in: PubMed   Mentions: 9     Fields:    Translation:Cells
    51. A survey of the neuroscience resource landscape: perspectives from the neuroscience information framework. Int Rev Neurobiol. 2012; 103:39-68. Cachat J, Bandrowski A, Grethe JS, Gupta A, Astakhov V, Imam F, Larson SD, Martone ME. PMID: 23195120.
      View in: PubMed   Mentions: 12     Fields:    Translation:HumansAnimals
    52. Three-dimensional reconstruction of serial mouse brain sections: solution for flattening high-resolution large-scale mosaics. Front Neuroanat. 2011; 5:17. Berlanga ML, Phan S, Bushong EA, Wu S, Kwon O, Phung BS, Lamont S, Terada M, Tasdizen T, Martone ME, Ellisman MH. PMID: 21629828; PMCID: PMC3096995.
      View in: PubMed   Mentions: 17  
    53. Challenges and opportunities in mining neuroscience data. Science. 2011 Feb 11; 331(6018):708-12. Akil H, Martone ME, Van Essen DC. PMID: 21311009; PMCID: PMC3102049.
      View in: PubMed   Mentions: 82     Fields:    Translation:HumansAnimalsCells
    54. Digital atlasing and standardization in the mouse brain. PLoS Comput Biol. 2011 Feb 03; 7(2):e1001065. Hawrylycz M, Baldock RA, Burger A, Hashikawa T, Johnson GA, Martone M, Ng L, Lau C, Larson SD, Larsen SD, Nissanov J, Puelles L, Ruffins S, Verbeek F, Zaslavsky I, Boline J. PMID: 21304938; PMCID: PMC3033370.
      View in: PubMed   Mentions: 53     Fields:    Translation:Animals
    55. Dimensionality Reduction on Multi-Dimensional Transfer Functions for Multi-Channel Volume Data Sets. Inf Vis. 2010 Sep 21; 9(3):167-180. Kim HS, Schulze JP, Cone AC, Sosinsky GE, Martone ME. PMID: 21841914; PMCID: PMC3153355.
      View in: PubMed   Mentions: 1  
    56. Application of neuroanatomical ontologies for neuroimaging data annotation. Front Neuroinform. 2010; 4. Turner JA, Mejino JL, Brinkley JF, Detwiler LT, Lee HJ, Martone ME, Rubin DL. PMID: 20725521; PMCID: PMC2912099.
      View in: PubMed   Mentions: 17  
    57. Multi-Channel Transfer Function with Dimensionality Reduction. Proc SPIE Int Soc Opt Eng. 2010 Jan 18; 7530:75300A. Kim HS, Schulze JP, Cone AC, Sosinsky GE, Martone ME. PMID: 20582228; PMCID: PMC2891081.
      View in: PubMed   Mentions: 1  
    58. Ontologies for Neuroscience: What are they and What are they Good for? Front Neurosci. 2009 May; 3(1):60-7. Larson SD, Martone ME. PMID: 19753098; PMCID: PMC2695392.
      View in: PubMed   Mentions: 21  
    59. Three-dimensional electron microscopy reveals new details of membrane systems for Ca2+ signaling in the heart. J Cell Sci. 2009 Apr 01; 122(Pt 7):1005-13. Hayashi T, Martone ME, Yu Z, Thor A, Doi M, Holst MJ, Ellisman MH, Hoshijima M. PMID: 19295127; PMCID: PMC2720931.
      View in: PubMed   Mentions: 134     Fields:    Translation:AnimalsCells
    60. The Neuroimaging Informatics Tools and Resources Clearinghouse (NITRC). AMIA Annu Symp Proc. 2008 Nov 06; 1000. Buccigrossi R, Ellisman M, Grethe J, Haselgrove C, Kennedy DN, Martone M, Preuss N, Reynolds K, Sullivan M, Turner J, Wagner K. PMID: 18999128.
      View in: PubMed   Mentions: 8     Fields:    
    61. Data federation in the Biomedical Informatics Research Network: tools for semantic annotation and query of distributed multiscale brain data. AMIA Annu Symp Proc. 2008 Nov 06; 1220. Bug W, Astahkov V, Boline J, Fennema-Notestine C, Grethe JS, Gupta A, Kennedy DN, Rubin DL, Sanders B, Turner JA, Martone ME. PMID: 18999211.
      View in: PubMed   Mentions: 7     Fields:    
    62. The NIFSTD and BIRNLex vocabularies: building comprehensive ontologies for neuroscience. Neuroinformatics. 2008 Sep; 6(3):175-94. Bug WJ, Ascoli GA, Grethe JS, Gupta A, Fennema-Notestine C, Laird AR, Larson SD, Rubin D, Shepherd GM, Turner JA, Martone ME. PMID: 18975148; PMCID: PMC2743139.
      View in: PubMed   Mentions: 83     Fields:    Translation:HumansAnimals
    63. The NIF LinkOut broker: a web resource to facilitate federated data integration using NCBI identifiers. Neuroinformatics. 2008 Sep; 6(3):219-27. Marenco L, Ascoli GA, Martone ME, Shepherd GM, Miller PL. PMID: 18975149; PMCID: PMC2704600.
      View in: PubMed   Mentions: 13     Fields:    Translation:HumansAnimals
    64. Federated access to heterogeneous information resources in the Neuroscience Information Framework (NIF). Neuroinformatics. 2008 Sep; 6(3):205-17. Gupta A, Bug W, Marenco L, Qian X, Condit C, Rangarajan A, Müller HM, Miller PL, Sanders B, Grethe JS, Astakhov V, Shepherd G, Sternberg PW, Martone ME. PMID: 18958629; PMCID: PMC2689790.
      View in: PubMed   Mentions: 44     Fields:    Translation:HumansAnimals
    65. Issues in the design of a pilot concept-based query interface for the neuroinformatics information framework. Neuroinformatics. 2008 Sep; 6(3):229-39. Marenco L, Li Y, Martone ME, Sternberg PW, Shepherd GM, Miller PL. PMID: 18953674; PMCID: PMC2664632.
      View in: PubMed   Mentions: 5     Fields:    Translation:HumansAnimals
    66. The neuroscience information framework: a data and knowledge environment for neuroscience. Neuroinformatics. 2008 Sep; 6(3):149-60. Gardner D, Akil H, Ascoli GA, Bowden DM, Bug W, Donohue DE, Goldberg DH, Grafstein B, Grethe JS, Gupta A, Halavi M, Kennedy DN, Marenco L, Martone ME, Miller PL, Müller HM, Robert A, Shepherd GM, Sternberg PW, Van Essen DC, Williams RW. PMID: 18946742; PMCID: PMC2661130.
      View in: PubMed   Mentions: 103     Fields:    Translation:HumansAnimals
    67. Large-scale biomedical image analysis in grid environments. IEEE Trans Inf Technol Biomed. 2008 Mar; 12(2):154-61. Kumar VS, Rutt B, Kurc T, Catalyurek UV, Pan TC, Chow S, Lamont S, Martone M, Saltz JH. PMID: 18348945; PMCID: PMC3294419.
      View in: PubMed   Mentions: 3     Fields:    
    68. A formal ontology of subcellular neuroanatomy. Front Neuroinform. 2007; 1:3. Larson SD, Fong LL, Gupta A, Condit C, Bug WJ, Martone ME. PMID: 18974798; PMCID: PMC2525993.
      View in: PubMed   Mentions: 11  
    69. The cell centered database project: an update on building community resources for managing and sharing 3D imaging data. J Struct Biol. 2008 Mar; 161(3):220-31. Martone ME, Tran J, Wong WW, Sargis J, Fong L, Larson S, Lamont SP, Gupta A, Ellisman MH. PMID: 18054501; PMCID: PMC2367257.
      View in: PubMed   Mentions: 43     Fields:    Translation:HumansCells
    70. The combination of chemical fixation procedures with high pressure freezing and freeze substitution preserves highly labile tissue ultrastructure for electron tomography applications. J Struct Biol. 2008 Mar; 161(3):359-71. Sosinsky GE, Crum J, Jones YZ, Lanman J, Smarr B, Terada M, Martone ME, Deerinck TJ, Johnson JE, Ellisman MH. PMID: 17962040; PMCID: PMC2459253.
      View in: PubMed   Mentions: 51     Fields:    Translation:AnimalsCells
    71. Distribution of Kv3.3 potassium channel subunits in distinct neuronal populations of mouse brain. J Comp Neurol. 2007 Jun 20; 502(6):953-72. Chang SY, Zagha E, Kwon ES, Ozaita A, Bobik M, Martone ME, Ellisman MH, Heintz N, Rudy B. PMID: 17444489.
      View in: PubMed   Mentions: 56     Fields:    Translation:HumansAnimalsCells
    72. Synapse formation on neurons born in the adult hippocampus. Nat Neurosci. 2007 Jun; 10(6):727-34. Toni N, Teng EM, Bushong EA, Aimone JB, Zhao C, Consiglio A, van Praag H, Martone ME, Ellisman MH, Gage FH. PMID: 17486101.
      View in: PubMed   Mentions: 261     Fields:    Translation:AnimalsCells
    73. The application of energy-filtered electron microscopy to tomography of thick, selectively stained biological samples. Methods Cell Biol. 2007; 79:643-60. Bouwer JC, Mackey MR, Lawrence A, Deerinck TJ, Jones YZ, Terada M, Martone ME, Peltier ST, Ellisman MH. PMID: 17327179.
      View in: PubMed   Mentions: 2     Fields:    Translation:Cells
    74. Light and electron microscopic localization of multiple proteins using quantum dots. Methods Mol Biol. 2007; 374:43-53. Deerinck TJ, Giepmans BN, Smarr BL, Martone ME, Ellisman MH. PMID: 17237528.
      View in: PubMed   Mentions: 14     Fields:    Translation:Animals
    75. Database resources for cellular electron microscopy. Methods Cell Biol. 2007; 79:799-822. Martone ME, Sargis J, Tran J, Wong WW, Jiles H, Mangir C. PMID: 17327184.
      View in: PubMed   Mentions: 3     Fields:    Translation:AnimalsCells
    76. Interoperability across neuroscience databases. Methods Mol Biol. 2007; 401:23-36. Marenco L, Nadkarni P, Martone M, Gupta A. PMID: 18368358.
      View in: PubMed   Mentions: 4     Fields:    Translation:Humans
    77. Data integration in eHealth: a domain/disease specific roadmap. Stud Health Technol Inform. 2007; 126:144-53. Ure J, Procter R, Martone M, Porteous D, Lloyd S, Lawrie S, Job D, Baldock R, Philp A, Liewald D, Rakebrandt F, Blaikie A, McKay C, Anderson S, Ainsworth J, van Hemert J, Blanquer I, Sinnott R, Barillot C, Gibaud FB, Williams A, Hartswood M, Watson P, Smith L, Burger A, Kennedy J, Gonzalez-Velez H, Stevens R, Corcho O, Morton R, Linksted P, Deschenes M, McGilchrist M, Johnson P, Voss A, Gertz R, Wardlaw J. PMID: 17476057.
      View in: PubMed   Mentions: 1     Fields:    Translation:Humans
    78. Collaborative development of the Arrowsmith two node search interface designed for laboratory investigators. J Biomed Discov Collab. 2006 Jul 03; 1:8. Smalheiser NR, Torvik VI, Bischoff-Grethe A, Burhans LB, Gabriel M, Homayouni R, Kashef A, Martone ME, Perkins GA, Price DL, Talk AC, West R. PMID: 16817965; PMCID: PMC1559644.
      View in: PubMed   Mentions: 12  
    79. High-resolution large-scale mosaic imaging using multiphoton microscopy to characterize transgenic mouse models of human neurological disorders. Neuroinformatics. 2006; 4(1):65-80. Price DL, Chow SK, Maclean NA, Hakozaki H, Peltier S, Martone ME, Ellisman MH. PMID: 16595859.
      View in: PubMed   Mentions: 15     Fields:    Translation:HumansAnimals
    80. Transient decrease in F-actin may be necessary for translocation of proteins into dendritic spines. Eur J Neurosci. 2005 Dec; 22(12):2995-3005. Ouyang Y, Wong M, Capani F, Rensing N, Lee CS, Liu Q, Neusch C, Martone ME, Wu JY, Yamada K, Ellisman MH, Choi DW. PMID: 16367766; PMCID: PMC2286827.
      View in: PubMed   Mentions: 36     Fields:    Translation:AnimalsCells
    81. Dicer and eIF2c are enriched at postsynaptic densities in adult mouse brain and are modified by neuronal activity in a calpain-dependent manner. J Neurochem. 2005 Aug; 94(4):896-905. Lugli G, Larson J, Martone ME, Jones Y, Smalheiser NR. PMID: 16092937.
      View in: PubMed   Mentions: 137     Fields:    Translation:AnimalsCells
    82. Evidence for ectopic neurotransmission at a neuronal synapse. Science. 2005 Jul 15; 309(5733):446-51. Coggan JS, Bartol TM, Esquenazi E, Stiles JR, Lamont S, Martone ME, Berg DK, Ellisman MH, Sejnowski TJ. PMID: 16020730; PMCID: PMC2915764.
      View in: PubMed   Mentions: 80     Fields:    Translation:AnimalsCells
    83. Biomedical informatics research network: building a national collaboratory to hasten the derivation of new understanding and treatment of disease. Stud Health Technol Inform. 2005; 112:100-9. Grethe JS, Baru C, Gupta A, James M, Ludaescher B, Martone ME, Papadopoulos PM, Peltier ST, Rajasekar A, Santini S, Zaslavsky IN, Ellisman MH. PMID: 15923720.
      View in: PubMed   Mentions: 27     Fields:    Translation:Humans
    84. Automated most-probable loss tomography of thick selectively stained biological specimens with quantitative measurement of resolution improvement. J Struct Biol. 2004 Dec; 148(3):297-306. Bouwer JC, Mackey MR, Lawrence A, Deerinck TJ, Jones YZ, Terada M, Martone ME, Peltier S, Ellisman MH. PMID: 15522778.
      View in: PubMed   Mentions: 11     Fields:    Translation:AnimalsCells
    85. Potassium channel subunit Kv3.2 and the water channel aquaporin-4 are selectively localized to cerebellar pinceau. Brain Res. 2004 Nov 12; 1026(2):168-78. Bobik M, Ellisman MH, Rudy B, Martone ME. PMID: 15488478.
      View in: PubMed   Mentions: 16     Fields:    Translation:AnimalsCells
    86. Protein ubiquitination in postsynaptic densities after transient cerebral ischemia. J Cereb Blood Flow Metab. 2004 Nov; 24(11):1219-25. Liu CL, Martone ME, Hu BR. PMID: 15545915; PMCID: PMC3518068.
      View in: PubMed   Mentions: 26     Fields:    Translation:AnimalsCells
    87. E-neuroscience: challenges and triumphs in integrating distributed data from molecules to brains. Nat Neurosci. 2004 May; 7(5):467-72. Martone ME, Gupta A, Ellisman MH. PMID: 15114360.
      View in: PubMed   Mentions: 41     Fields:    Translation:HumansAnimals
    88. Maturation of astrocyte morphology and the establishment of astrocyte domains during postnatal hippocampal development. Int J Dev Neurosci. 2004 Apr; 22(2):73-86. Bushong EA, Martone ME, Ellisman MH. PMID: 15036382.
      View in: PubMed   Mentions: 159     Fields:    Translation:AnimalsCells
    89. Towards a formalization of disease-specific ontologies for neuroinformatics. Neural Netw. 2003 Nov; 16(9):1277-92. Gupta A, Ludäscher B, Grethe JS, Martone ME. PMID: 14622884.
      View in: PubMed   Mentions: 6     Fields:    
    90. ER-to-Golgi carriers arise through direct en bloc protrusion and multistage maturation of specialized ER exit domains. Dev Cell. 2003 Oct; 5(4):583-94. Mironov AA, Mironov AA, Beznoussenko GV, Trucco A, Lupetti P, Smith JD, Geerts WJ, Koster AJ, Burger KN, Martone ME, Deerinck TJ, Ellisman MH, Luini A. PMID: 14536060.
      View in: PubMed   Mentions: 74     Fields:    Translation:HumansAnimalsCells
    91. Examination of the relationship between astrocyte morphology and laminar boundaries in the molecular layer of adult dentate gyrus. J Comp Neurol. 2003 Jul 21; 462(2):241-51. Bushong EA, Martone ME, Ellisman MH. PMID: 12794746.
      View in: PubMed   Mentions: 15     Fields:    Translation:AnimalsCells
    92. The cell-centered database: a database for multiscale structural and protein localization data from light and electron microscopy. Neuroinformatics. 2003; 1(4):379-95. Martone ME, Zhang S, Gupta A, Qian X, He H, Price DL, Wong M, Santini S, Ellisman MH. PMID: 15043222.
      View in: PubMed   Mentions: 44     Fields:    Translation:Cells
    93. Disruption of dendritic translation of CaMKIIalpha impairs stabilization of synaptic plasticity and memory consolidation. Neuron. 2002 Oct 24; 36(3):507-19. Miller S, Yasuda M, Coats JK, Jones Y, Martone ME, Mayford M. PMID: 12408852.
      View in: PubMed   Mentions: 204     Fields:    Translation:AnimalsCells
    94. Measuring health-related quality of life in patients with hepatobiliary cancers: the functional assessment of cancer therapy-hepatobiliary questionnaire. J Clin Oncol. 2002 May 01; 20(9):2229-39. Heffernan N, Cella D, Webster K, Odom L, Martone M, Passik S, Bookbinder M, Fong Y, Jarnagin W, Blumgart L. PMID: 11980994.
      View in: PubMed   Mentions: 77     Fields:    Translation:Humans
    95. A cell-centered database for electron tomographic data. J Struct Biol. 2002 Apr-May; 138(1-2):145-55. Martone ME, Gupta A, Wong M, Qian X, Sosinsky G, Ludäscher B, Ellisman MH. PMID: 12160711.
      View in: PubMed   Mentions: 39     Fields:    Translation:HumansAnimalsCells
    96. Protoplasmic astrocytes in CA1 stratum radiatum occupy separate anatomical domains. J Neurosci. 2002 Jan 01; 22(1):183-92. Bushong EA, Martone ME, Jones YZ, Ellisman MH. PMID: 11756501; PMCID: PMC6757596.
      View in: PubMed   Mentions: 567     Fields:    Translation:AnimalsCells
    97. Apoptosis and oncosis in the early progression of left ventricular dysfunction in the cardiomyopathic hamster. Basic Res Cardiol. 2002 Jan; 97(1):65-75. Ryoke T, Gu Y, Ikeda Y, Martone ME, Oh SS, Jeon ES, Knowlton KU, Ross J. PMID: 12004790.
      View in: PubMed   Mentions: 9     Fields:    Translation:AnimalsCells
    98. Alterations of hippocampal postsynaptic densities following transient ischemia. Hippocampus. 2000; 10(5):610-6. Martone ME, Hu BR, Ellisman MH. PMID: 11075832.
      View in: PubMed   Mentions: 7     Fields:    Translation:AnimalsCells
    99. Cellular and subcellular distribution of the calcium-binding protein NCS-1 in the central nervous system of the rat. Cell Tissue Res. 1999 Mar; 295(3):395-407. Martone ME, Edelmann VM, Ellisman MH, Nef P. PMID: 10022960.
      View in: PubMed   Mentions: 26     Fields:    Translation:AnimalsCells
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