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    Maryann Martone

    TitleRecall Faculty
    SchoolUniversity of California, San Diego
    DepartmentNeurosciences
    Address9500 Gilman Drive #0608
    CA La Jolla 92093
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      Collapse Research 
      Collapse Research Activities and Funding
      A Community Resource for Single Cell Data in the Brain
      NIH/NIMH U24MH114827Sep 20, 2017 - Jun 30, 2022
      Role: Co-Principal Investigator
      OPERATION, SUPPORT AND STRATEGIC ENHANCEMENT OF THE NEUROSCIENCE INFORMATION FRAMEWORK
      NIH/NIDA U24DA039832Apr 1, 2015 - Mar 31, 2017
      Role: Principal Investigator
      NIDDK Network Coordinating Unit
      NIH/NIDDK U24DK097771Dec 1, 2012 - Nov 30, 2017
      Role: Principal Investigator
      Creation of An Aging Knowledge Environment Through Enhancement of the NIF
      NIH/NIA R03AG043018Aug 15, 2012 - Jul 31, 2014
      Role: Principal Investigator
      SMA EDUCATION AND OUTREACH IN THE NORTHEAST
      CDC/NCBDD H75DD000732Sep 15, 2010 - Sep 14, 2011
      Role: Principal Investigator
      Support of and Extensions to the Cell Image Library
      NIH/NIGMS R01GM082949Sep 30, 2007 - Jun 30, 2020
      Role: Principal Investigator
      Ontology-based multiscale investigation of human neurological disease models
      NIH/NINDS R01NS058296Apr 1, 2007 - Mar 31, 2013
      Role: Principal Investigator
      DEVELOPMENT OF A 3-D CELL-CENTERED NEURONAL DATABASE
      NIH/NIDA R01DA016602Sep 30, 1997 - Mar 31, 2010
      Role: Principal Investigator
      IVEM and Image Analysis Resource
      NIH/NCRR P41RR004050Dec 12, 1988 - Mar 31, 2014
      Role: Co-Investigator

      Collapse Bibliographic 
      Collapse Publications
      Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help.
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      1. Bandrowski AE, Martone M. RRIDs: A Simple Step toward Improving Reproducibility through Rigor and Transparency of Experimental Methods. Neuron. 2016 May 04; 90(3):434-6. PMID: 27151636.
        View in: PubMed
      2. Bandrowski A, Brush M, Grethe JS, Haendel MA, Kennedy DN, Hill S, Hof PR, Martone M, Pols M, Tan SS, Washington N, Zudilova-Seinstra E, Vasilevsky N. The Resource Identification Initiative: A Cultural Shift in Publishing. Neuroinformatics. 2016 Apr; 14(2):169-82. PMID: 26589523.
        View in: PubMed
      3. Ozyurt IB, Grethe JS, Martone M, Bandrowski AE. Resource Disambiguator for the Web: Extracting Biomedical Resources and Their Citations from the Scientific Literature. PLoS One. 2016; 11(1):e0146300. PMID: 26730820.
        View in: PubMed
      4. Bandrowski A, Brush M, Grethe JS, Haendel MA, Kennedy DN, Hill S, Hof PR, Martone M, Pols M, Tan SC, Washington N, Zudilova-Seinstra E, Vasilevsky N. The Resource Identification Initiative: A Cultural Shift in Publishing. J Comp Neurol. 2016 Jan 01; 524(1):8-22. PMID: 26599696; PMCID: PMC4684178.
      5. Bandrowski A, Brush M, Grethe JS, Haendel MA, Kennedy DN, Hill S, Hof PR, Martone M, Pols M, Tan SC, Washington N, Zudilova-Seinstra E, Vasilevsky N. The Resource Identification Initiative: a cultural shift in publishing. Brain Behav. 2016 Jan; 6(1):e00417. PMID: 27110440; PMCID: PMC4834942.
      6. Whetzel PL, Grethe JS, Banks DE, Martone M. The NIDDK Information Network: A Community Portal for Finding Data, Materials, and Tools for Researchers Studying Diabetes, Digestive, and Kidney Diseases. PLoS One. 2015; 10(9):e0136206. PMID: 26393351; PMCID: PMC4578941.
      7. Bandrowski A, Brush M, Grethe JS, Haendel MA, Kennedy DN, Hill S, Hof PR, Martone M, Pols M, Tan S, Washington N, Zudilova-Seinstra E, Vasilevsky N. The Resource Identification Initiative: A cultural shift in publishing. F1000Res. 2015; 4:134. PMID: 26594330; PMCID: PMC4648211.
      8. Sivagnanam S, Majumdar A, Yoshimoto K, Astakhov V, Bandrowski A, Martone M, Carnevale NT. Early experiences in developing and managing the neuroscience gateway. Concurr Comput. 2015 Feb 01; 27(2):473-488. PMID: 26523124.
        View in: PubMed
      9. Ferguson AR, Nielson JL, Cragin MH, Bandrowski AE, Martone M. Big data from small data: data-sharing in the 'long tail' of neuroscience. Nat Neurosci. 2014 Nov; 17(11):1442-7. PMID: 25349910; PMCID: PMC4728080.
      10. Martone M, Ascoli GA. Connecting connectomes. Neuroinformatics. 2013 Oct; 11(4):389-92. PMID: 24096724; PMCID: PMC3858843.
      11. Larson SD, Martone M. NeuroLex.org: an online framework for neuroscience knowledge. Front Neuroinform. 2013; 7:18. PMID: 24009581; PMCID: PMC3757470.
      12. Maynard SM, Mungall CJ, Lewis SE, Imam FT, Martone M. A knowledge based approach to matching human neurodegenerative disease and animal models. Front Neuroinform. 2013; 7:7. PMID: 23717278; PMCID: PMC3653101.
      13. Cone AC, Ambrosi C, Scemes E, Martone M, Sosinsky GE. A comparative antibody analysis of pannexin1 expression in four rat brain regions reveals varying subcellular localizations. Front Pharmacol. 2013; 4:6. PMID: 23390418; PMCID: PMC3565217.
      14. Orloff DN, Iwasa JH, Martone M, Ellisman MH, Kane CM. The cell: an image library-CCDB: a curated repository of microscopy data. Nucleic Acids Res. 2013 Jan; 41(Database issue):D1241-50. PMID: 23203874; PMCID: PMC3531121.
      15. Burette AC, Lesperance T, Crum J, Martone M, Volkmann N, Ellisman MH, Weinberg RJ. Electron tomographic analysis of synaptic ultrastructure. J Comp Neurol. 2012 Aug 15; 520(12):2697-711. PMID: 22684938; PMCID: PMC3856703.
      16. Eliceiri KW, Berthold MR, Goldberg IG, Ibáñez L, Manjunath BS, Martone M, Murphy RF, Peng H, Plant AL, Roysam B, Stuurman N, Stuurmann N, Swedlow JR, Tomancak P, Carpenter AE. Biological imaging software tools. Nat Methods. 2012 Jun 28; 9(7):697-710. PMID: 22743775; PMCID: PMC3659807.
      17. Imam FT, Larson SD, Bandrowski A, Grethe JS, Gupta A, Martone M. Development and use of Ontologies Inside the Neuroscience Information Framework: A Practical Approach. Front Genet. 2012; 3:111. PMID: 22737162; PMCID: PMC3381282.
      18. Giuly RJ, Martone M, Ellisman MH. Method: automatic segmentation of mitochondria utilizing patch classification, contour pair classification, and automatically seeded level sets. BMC Bioinformatics. 2012 Feb 09; 13:29. PMID: 22321695; PMCID: PMC3293777.
      19. Cachat J, Bandrowski A, Grethe JS, Gupta A, Astakhov V, Imam F, Larson SD, Martone M. A survey of the neuroscience resource landscape: perspectives from the neuroscience information framework. Int Rev Neurobiol. 2012; 103:39-68. PMID: 23195120.
        View in: PubMed
      20. Berlanga ML, Phan S, Bushong EA, Wu S, Kwon O, Phung BS, Lamont S, Terada M, Tasdizen T, Martone M, Ellisman MH. Three-dimensional reconstruction of serial mouse brain sections: solution for flattening high-resolution large-scale mosaics. Front Neuroanat. 2011; 5:17. PMID: 21629828; PMCID: PMC3096995.
      21. Akil H, Martone M, Van Essen DC. Challenges and opportunities in mining neuroscience data. Science. 2011 Feb 11; 331(6018):708-12. PMID: 21311009; PMCID: PMC3102049.
      22. Hawrylycz M, Baldock RA, Burger A, Hashikawa T, Johnson GA, Martone M, Ng L, Lau C, Larson SD, Larsen SD, Nissanov J, Puelles L, Ruffins S, Verbeek F, Zaslavsky I, Boline J. Digital atlasing and standardization in the mouse brain. PLoS Comput Biol. 2011 Feb 03; 7(2):e1001065. PMID: 21304938; PMCID: PMC3033370.
      23. Kim HS, Schulze JP, Cone AC, Sosinsky GE, Martone M. Dimensionality Reduction on Multi-Dimensional Transfer Functions for Multi-Channel Volume Data Sets. Inf Vis. 2010 Sep 21; 9(3):167-180. PMID: 21841914.
        View in: PubMed
      24. Kim HS, Schulze JP, Cone AC, Sosinsky GE, Martone M. Multi-Channel Transfer Function with Dimensionality Reduction. Proc SPIE Int Soc Opt Eng. 2010 Jan 18; 7530:75300A. PMID: 20582228.
        View in: PubMed
      25. Larson SD, Martone M. Ontologies for Neuroscience: What are they and What are they Good for? Front Neurosci. 2009 May; 3(1):60-7. PMID: 19753098; PMCID: PMC2695392.
      26. Hayashi T, Martone M, Yu Z, Thor A, Doi M, Holst MJ, Ellisman MH, Hoshijima M. Three-dimensional electron microscopy reveals new details of membrane systems for Ca2+ signaling in the heart. J Cell Sci. 2009 Apr 01; 122(Pt 7):1005-13. PMID: 19295127; PMCID: PMC2720931.
      27. Buccigrossi R, Ellisman M, Grethe J, Haselgrove C, Kennedy DN, Martone M, Preuss N, Reynolds K, Sullivan M, Turner J, Wagner K. The Neuroimaging Informatics Tools and Resources Clearinghouse (NITRC). AMIA Annu Symp Proc. 2008 Nov 06; 1000. PMID: 18999128.
        View in: PubMed
      28. Bug W, Astahkov V, Boline J, Fennema-Notestine C, Grethe JS, Gupta A, Kennedy DN, Rubin DL, Sanders B, Turner JA, Martone M. Data federation in the Biomedical Informatics Research Network: tools for semantic annotation and query of distributed multiscale brain data. AMIA Annu Symp Proc. 2008 Nov 06; 1220. PMID: 18999211.
        View in: PubMed
      29. Bug WJ, Ascoli GA, Grethe JS, Gupta A, Fennema-Notestine C, Laird AR, Larson SD, Rubin D, Shepherd GM, Turner JA, Martone M. The NIFSTD and BIRNLex vocabularies: building comprehensive ontologies for neuroscience. Neuroinformatics. 2008 Sep; 6(3):175-94. PMID: 18975148; PMCID: PMC2743139.
      30. Marenco L, Ascoli GA, Martone M, Shepherd GM, Miller PL. The NIF LinkOut broker: a web resource to facilitate federated data integration using NCBI identifiers. Neuroinformatics. 2008 Sep; 6(3):219-27. PMID: 18975149; PMCID: PMC2704600.
      31. Gupta A, Bug W, Marenco L, Qian X, Condit C, Rangarajan A, Müller HM, Miller PL, Sanders B, Grethe JS, Astakhov V, Shepherd G, Sternberg PW, Martone M. Federated access to heterogeneous information resources in the Neuroscience Information Framework (NIF). Neuroinformatics. 2008 Sep; 6(3):205-17. PMID: 18958629; PMCID: PMC2689790.
      32. Marenco L, Li Y, Martone M, Sternberg PW, Shepherd GM, Miller PL. Issues in the design of a pilot concept-based query interface for the neuroinformatics information framework. Neuroinformatics. 2008 Sep; 6(3):229-39. PMID: 18953674; PMCID: PMC2664632.
      33. Gardner D, Akil H, Ascoli GA, Bowden DM, Bug W, Donohue DE, Goldberg DH, Grafstein B, Grethe JS, Gupta A, Halavi M, Kennedy DN, Marenco L, Martone M, Miller PL, Müller HM, Robert A, Shepherd GM, Sternberg PW, Van Essen DC, Williams RW. The neuroscience information framework: a data and knowledge environment for neuroscience. Neuroinformatics. 2008 Sep; 6(3):149-60. PMID: 18946742; PMCID: PMC2661130.
      34. Kumar VS, Rutt B, Kurc T, Catalyurek UV, Pan TC, Chow S, Lamont S, Martone M, Saltz JH. Large-scale biomedical image analysis in grid environments. IEEE Trans Inf Technol Biomed. 2008 Mar; 12(2):154-61. PMID: 18348945; PMCID: PMC3294419.
      35. Larson SD, Fong LL, Gupta A, Condit C, Bug WJ, Martone M. A formal ontology of subcellular neuroanatomy. Front Neuroinform. 2007; 1:3. PMID: 18974798; PMCID: PMC2525993.
      36. Martone M, Tran J, Wong WW, Sargis J, Fong L, Larson S, Lamont SP, Gupta A, Ellisman MH. The cell centered database project: an update on building community resources for managing and sharing 3D imaging data. J Struct Biol. 2008 Mar; 161(3):220-31. PMID: 18054501; PMCID: PMC2367257.
      37. Sosinsky GE, Crum J, Jones YZ, Lanman J, Smarr B, Terada M, Martone M, Deerinck TJ, Johnson JE, Ellisman MH. The combination of chemical fixation procedures with high pressure freezing and freeze substitution preserves highly labile tissue ultrastructure for electron tomography applications. J Struct Biol. 2008 Mar; 161(3):359-71. PMID: 17962040; PMCID: PMC2459253.
      38. Chang SY, Zagha E, Kwon ES, Ozaita A, Bobik M, Martone M, Ellisman MH, Heintz N, Rudy B. Distribution of Kv3.3 potassium channel subunits in distinct neuronal populations of mouse brain. J Comp Neurol. 2007 Jun 20; 502(6):953-72. PMID: 17444489.
        View in: PubMed
      39. Toni N, Teng EM, Bushong EA, Aimone JB, Zhao C, Consiglio A, van Praag H, Martone M, Ellisman MH, Gage FH. Synapse formation on neurons born in the adult hippocampus. Nat Neurosci. 2007 Jun; 10(6):727-34. PMID: 17486101.
        View in: PubMed
      40. Deerinck TJ, Giepmans BN, Smarr BL, Martone M, Ellisman MH. Light and electron microscopic localization of multiple proteins using quantum dots. Methods Mol Biol. 2007; 374:43-53. PMID: 17237528.
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      41. Bouwer JC, Mackey MR, Lawrence A, Deerinck TJ, Jones YZ, Terada M, Martone M, Peltier ST, Ellisman MH. The application of energy-filtered electron microscopy to tomography of thick, selectively stained biological samples. Methods Cell Biol. 2007; 79:643-60. PMID: 17327179.
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      42. Martone M, Sargis J, Tran J, Wong WW, Jiles H, Mangir C. Database resources for cellular electron microscopy. Methods Cell Biol. 2007; 79:799-822. PMID: 17327184.
        View in: PubMed
      43. Marenco L, Nadkarni P, Martone M, Gupta A. Interoperability across neuroscience databases. Methods Mol Biol. 2007; 401:23-36. PMID: 18368358.
        View in: PubMed
      44. Smalheiser NR, Torvik VI, Bischoff-Grethe A, Burhans LB, Gabriel M, Homayouni R, Kashef A, Martone M, Perkins GA, Price DL, Talk AC, West R. Collaborative development of the Arrowsmith two node search interface designed for laboratory investigators. J Biomed Discov Collab. 2006 Jul 03; 1:8. PMID: 16817965; PMCID: PMC1559644.
      45. Price DL, Chow SK, Maclean NA, Hakozaki H, Peltier S, Martone M, Ellisman MH. High-resolution large-scale mosaic imaging using multiphoton microscopy to characterize transgenic mouse models of human neurological disorders. Neuroinformatics. 2006; 4(1):65-80. PMID: 16595859.
        View in: PubMed
      46. Ouyang Y, Wong M, Capani F, Rensing N, Lee CS, Liu Q, Neusch C, Martone M, Wu JY, Yamada K, Ellisman MH, Choi DW. Transient decrease in F-actin may be necessary for translocation of proteins into dendritic spines. Eur J Neurosci. 2005 Dec; 22(12):2995-3005. PMID: 16367766; PMCID: PMC2286827.
      47. Lugli G, Larson J, Martone M, Jones Y, Smalheiser NR. Dicer and eIF2c are enriched at postsynaptic densities in adult mouse brain and are modified by neuronal activity in a calpain-dependent manner. J Neurochem. 2005 Aug; 94(4):896-905. PMID: 16092937.
        View in: PubMed
      48. Coggan JS, Bartol TM, Esquenazi E, Stiles JR, Lamont S, Martone M, Berg DK, Ellisman MH, Sejnowski TJ. Evidence for ectopic neurotransmission at a neuronal synapse. Science. 2005 Jul 15; 309(5733):446-51. PMID: 16020730; PMCID: PMC2915764.
      49. Grethe JS, Baru C, Gupta A, James M, Ludaescher B, Martone M, Papadopoulos PM, Peltier ST, Rajasekar A, Santini S, Zaslavsky IN, Ellisman MH. Biomedical informatics research network: building a national collaboratory to hasten the derivation of new understanding and treatment of disease. Stud Health Technol Inform. 2005; 112:100-9. PMID: 15923720.
        View in: PubMed
      50. Bouwer JC, Mackey MR, Lawrence A, Deerinck TJ, Jones YZ, Terada M, Martone M, Peltier S, Ellisman MH. Automated most-probable loss tomography of thick selectively stained biological specimens with quantitative measurement of resolution improvement. J Struct Biol. 2004 Dec; 148(3):297-306. PMID: 15522778.
        View in: PubMed
      51. Bobik M, Ellisman MH, Rudy B, Martone M. Potassium channel subunit Kv3.2 and the water channel aquaporin-4 are selectively localized to cerebellar pinceau. Brain Res. 2004 Nov 12; 1026(2):168-78. PMID: 15488478.
        View in: PubMed
      52. Liu CL, Martone M, Hu BR. Protein ubiquitination in postsynaptic densities after transient cerebral ischemia. J Cereb Blood Flow Metab. 2004 Nov; 24(11):1219-25. PMID: 15545915; PMCID: PMC3518068.
      53. Martone M, Gupta A, Ellisman MH. E-neuroscience: challenges and triumphs in integrating distributed data from molecules to brains. Nat Neurosci. 2004 May; 7(5):467-72. PMID: 15114360.
        View in: PubMed
      54. Bushong EA, Martone M, Ellisman MH. Maturation of astrocyte morphology and the establishment of astrocyte domains during postnatal hippocampal development. Int J Dev Neurosci. 2004 Apr; 22(2):73-86. PMID: 15036382.
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      55. Gupta A, Ludäscher B, Grethe JS, Martone M. Towards a formalization of disease-specific ontologies for neuroinformatics. Neural Netw. 2003 Nov; 16(9):1277-92. PMID: 14622884.
        View in: PubMed
      56. Mironov AA, Mironov AA, Beznoussenko GV, Trucco A, Lupetti P, Smith JD, Geerts WJ, Koster AJ, Burger KN, Martone M, Deerinck TJ, Ellisman MH, Luini A. ER-to-Golgi carriers arise through direct en bloc protrusion and multistage maturation of specialized ER exit domains. Dev Cell. 2003 Oct; 5(4):583-94. PMID: 14536060.
        View in: PubMed
      57. Bushong EA, Martone M, Ellisman MH. Examination of the relationship between astrocyte morphology and laminar boundaries in the molecular layer of adult dentate gyrus. J Comp Neurol. 2003 Jul 21; 462(2):241-51. PMID: 12794746.
        View in: PubMed
      58. Martone M, Zhang S, Gupta A, Qian X, He H, Price DL, Wong M, Santini S, Ellisman MH. The cell-centered database: a database for multiscale structural and protein localization data from light and electron microscopy. Neuroinformatics. 2003; 1(4):379-95. PMID: 15043222.
        View in: PubMed
      59. Miller S, Yasuda M, Coats JK, Jones Y, Martone M, Mayford M. Disruption of dendritic translation of CaMKIIalpha impairs stabilization of synaptic plasticity and memory consolidation. Neuron. 2002 Oct 24; 36(3):507-19. PMID: 12408852.
        View in: PubMed
      60. Martone M, Gupta A, Wong M, Qian X, Sosinsky G, Ludäscher B, Ellisman MH. A cell-centered database for electron tomographic data. J Struct Biol. 2002 Apr-May; 138(1-2):145-55. PMID: 12160711.
        View in: PubMed
      61. Bushong EA, Martone M, Jones YZ, Ellisman MH. Protoplasmic astrocytes in CA1 stratum radiatum occupy separate anatomical domains. J Neurosci. 2002 Jan 01; 22(1):183-92. PMID: 11756501.
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      62. Martone M, Hu BR, Ellisman MH. Alterations of hippocampal postsynaptic densities following transient ischemia. Hippocampus. 2000; 10(5):610-6. PMID: 11075832.
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      63. Martone M, Edelmann VM, Ellisman MH, Nef P. Cellular and subcellular distribution of the calcium-binding protein NCS-1 in the central nervous system of the rat. Cell Tissue Res. 1999 Mar; 295(3):395-407. PMID: 10022960.
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