Thomas Deerinck

Title(s)ACAD PRG MGT OFCR 5, Neurosciences
SchoolVc-health Sciences-schools
Address9500 Gilman Drive #
La Jolla CA 92093
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. ChromEMT: visualizing and reconstructing chromatin ultrastructure and 3D organization in situ. Nat Protoc. 2024 Nov 29. Ou HD, Phan S, Deerinck TJ, Inagaki A, Ellisman MH, O'Shea CC. PMID: 39613943.
      View in: PubMed   Mentions:    Fields:    
    2. Calorie restriction increases insulin sensitivity to promote beta cell homeostasis and longevity in mice. Nat Commun. 2024 Oct 21; 15(1):9063. Dos Santos C, Cambraia A, Shrestha S, Cutler M, Cottam M, Perkins G, Lev-Ram V, Roy B, Acree C, Kim KY, Deerinck T, Dean D, Cartailler JP, MacDonald PE, Hetzer M, Ellisman M, Arrojo E Drigo R. PMID: 39433757; PMCID: PMC11493975.
      View in: PubMed   Mentions:    Fields:    Translation:AnimalsCells
    3. Do Perineuronal Nets Stabilize the Engram of a Synaptic Circuit? Cells. 2024 Sep 29; 13(19). Lev-Ram V, Lemieux SP, Deerinck TJ, Bushong EA, Perez AJ, Pritchard DR, Toyama BH, Park SKR, McClatchy DB, Savas JN, Whitney M, Adams SR, Ellisman MH, Yates J, Tsien RY. PMID: 39404392; PMCID: PMC11476018.
      View in: PubMed   Mentions: 1     Fields:    Translation:AnimalsCells
    4. Fibrin drives thromboinflammation and neuropathology in COVID-19. Nature. 2024 Sep; 633(8031):905-913. Ryu JK, Yan Z, Montano M, Sozmen EG, Dixit K, Suryawanshi RK, Matsui Y, Helmy E, Kaushal P, Makanani SK, Deerinck TJ, Meyer-Franke A, Rios Coronado PE, Trevino TN, Shin MG, Tognatta R, Liu Y, Schuck R, Le L, Miyajima H, Mendiola AS, Arun N, Guo B, Taha TY, Agrawal A, MacDonald E, Aries O, Yan A, Weaver O, Petersen MA, Meza Acevedo R, Alzamora MDPS, Thomas R, Traglia M, Kouznetsova VL, Tsigelny IF, Pico AR, Red-Horse K, Ellisman MH, Krogan NJ, Bouhaddou M, Ott M, Greene WC, Akassoglou K. PMID: 39198643; PMCID: PMC11424477.
      View in: PubMed   Mentions: 3     Fields:    Translation:HumansAnimalsCells
    5. Mesoscale Metabolic Channeling Revealed by Multimodal Microscopy. Res Sq. 2024 Apr 17. E Drigo RA, Habashy A, Acree C, Kim KY, Deerinck T, Patterson E, Lantier L, McGuinness O, Ellisman M. PMID: 38699373; PMCID: PMC11065083.
      View in: PubMed   Mentions:
    6. Astrocyte ensheathment of calyx-forming axons of the auditory brainstem precedes accelerated expression of myelin genes and myelination by oligodendrocytes. J Comp Neurol. 2024 02; 532(2):e25552. Heller DT, Kolson DR, Brandebura AN, Amick EM, Wan J, Ramadan J, Holcomb PS, Liu S, Deerinck TJ, Ellisman MH, Qian J, Mathers PH, Spirou GA. PMID: 37916792; PMCID: PMC10922096.
      View in: PubMed   Mentions: 2     Fields:    Translation:AnimalsCells
    7. Fe-TAMLs as a new class of small molecule peroxidase probes for correlated light and electron microscopy. bioRxiv. 2023 Oct 04. Adams SR, Mackey MR, Ramachandra R, Deerinck TJ, Castillon GA, Phan S, Hu J, Boassa D, Ngo JT, Ellisman MH. PMID: 37662194; PMCID: PMC10473768.
      View in: PubMed   Mentions:
    8. Caloric restriction promotes beta cell longevity and delays aging and senescence by enhancing cell identity and homeostasis mechanisms. Res Sq. 2023 Sep 20. Dos Santos C, Shrestha S, Cottam M, Perkins G, Lev-Ram V, Roy B, Acree C, Kim KY, Deerinck T, Cutler M, Dean D, Cartailler JP, MacDonald PE, Hetzer M, Ellisman M, Drigo RAE. PMID: 37790446; PMCID: PMC10543285.
      View in: PubMed   Mentions:
    9. Caloric restriction promotes beta cell longevity and delays aging and senescence by enhancing cell identity and homeostasis mechanisms. bioRxiv. 2023 Aug 24. Dos Santos C, Shrestha S, Cottam M, Perkins G, Lev-Ram V, Roy B, Acree C, Kim KY, Deerinck T, Cutler M, Dean D, Cartailler JP, MacDonald PE, Hetzer M, Ellisman M, E Drigo RA. PMID: 37662336; PMCID: PMC10473730.
      View in: PubMed   Mentions:
    10. Do perineuronal nets stabilize the engram of a synaptic circuit? bioRxiv. 2023 Apr 09. Lev-Ram V, Lemieux SP, Deerinck TJ, Bushong EA, Toyama BH, Perez A, Pritchard DR, Park SKR, McClatchy DB, Savas JN, Taylor SS, Ellisman MH, Yates J, Tsien RY. PMID: 37066274; PMCID: PMC10104172.
      View in: PubMed   Mentions:
    11. A Cristae-Like Microcompartment in Desulfobacterota. mBio. 2022 12 20; 13(6):e0161322. McGlynn SE, Perkins G, Sim MS, Mackey M, Deerinck TJ, Thor A, Phan S, Ballard D, Ellisman MH, Orphan VJ. PMID: 36321837; PMCID: PMC9764997.
      View in: PubMed   Mentions:    Fields:    Translation:AnimalsCells
    12. A combined EM and proteomic analysis places HIV-1 Vpu at the crossroads of retromer and ESCRT complexes: PTPN23 is a Vpu-cofactor. PLoS Pathog. 2021 11; 17(11):e1009409. Stoneham CA, Langer S, De Jesus PD, Wozniak JM, Lapek J, Deerinck T, Thor A, Pache L, Chanda SK, Gonzalez DJ, Ellisman M, Guatelli J. PMID: 34843601; PMCID: PMC8659692.
      View in: PubMed   Mentions:    Fields:    Translation:HumansCells
    13. SARS-CoV-2 spike protein induces abnormal inflammatory blood clots neutralized by fibrin immunotherapy. bioRxiv. 2021 Oct 13. Ryu JK, Sozmen EG, Dixit K, Montano M, Matsui Y, Liu Y, Helmy E, Deerinck TJ, Yan Z, Schuck R, Acevedo RM, Spencer CM, Thomas R, Pico AR, Zamvil SS, Lynch KL, Ellisman MH, Greene WC, Akassoglou K. PMID: 34671772; PMCID: PMC8528086.
      View in: PubMed   Mentions: 1  
    14. Genetic requirements for cell division in a genomically minimal cell. Cell. 2021 04 29; 184(9):2430-2440.e16. Pelletier JF, Sun L, Wise KS, Assad-Garcia N, Karas BJ, Deerinck TJ, Ellisman MH, Mershin A, Gershenfeld N, Chuang RY, Glass JI, Strychalski EA. PMID: 33784496.
      View in: PubMed   Mentions: 36     Fields:    Translation:Cells
    15. Proximity proteomics in a marine diatom reveals a putative cell surface-to-chloroplast iron trafficking pathway. Elife. 2021 02 16; 10. Turnšek J, Brunson JK, Viedma MDPM, Deerinck TJ, Horák A, Oborník M, Bielinski VA, Allen AE. PMID: 33591270; PMCID: PMC7972479.
      View in: PubMed   Mentions: 11     Fields:    Translation:AnimalsCells
    16. Synaptic Specializations of Melanopsin-Retinal Ganglion Cells in Multiple Brain Regions Revealed by Genetic Label for Light and Electron Microscopy. Cell Rep. 2019 10 15; 29(3):628-644.e6. Kim KY, Rios LC, Le H, Perez AJ, Phan S, Bushong EA, Deerinck TJ, Liu YH, Ellisman MA, Lev-Ram V, Ju S, Panda SA, Yoon S, Hirayama M, Mure LS, Hatori M, Ellisman MH, Panda S. PMID: 31618632; PMCID: PMC7045601.
      View in: PubMed   Mentions: 13     Fields:    Translation:AnimalsCells
    17. Author Correction: Structural basis for delta cell paracrine regulation in pancreatic islets. Nat Commun. 2019 Sep 11; 10(1):4218. E Drigo RA, Jacob S, García-Prieto CF, Zheng X, Fukuda M, Nhu HTT, Stelmashenko O, Peçanha FLM, Rodriguez-Diaz R, Bushong E, Deerinck T, Phan S, Ali Y, Leibiger I, Chua M, Boudier T, Song SH, Graf M, Augustine GJ, Ellisman MH, Berggren PO. PMID: 31511521; PMCID: PMC6739466.
      View in: PubMed   Mentions:    Fields:    
    18. Structural basis for delta cell paracrine regulation in pancreatic islets. Nat Commun. 2019 08 16; 10(1):3700. Arrojo E Drigo R, Jacob S, García-Prieto CF, Zheng X, Fukuda M, Nhu HTT, Stelmashenko O, Peçanha FLM, Rodriguez-Diaz R, Bushong E, Deerinck T, Phan S, Ali Y, Leibiger I, Chua M, Boudier T, Song SH, Graf M, Augustine GJ, Ellisman MH, Berggren PO. PMID: 31420552; PMCID: PMC6697679.
      View in: PubMed   Mentions: 56     Fields:    Translation:HumansAnimalsCells
    19. Age Mosaicism across Multiple Scales in Adult Tissues. Cell Metab. 2019 08 06; 30(2):343-351.e3. Arrojo E Drigo R, Lev-Ram V, Tyagi S, Ramachandra R, Deerinck T, Bushong E, Phan S, Orphan V, Lechene C, Ellisman MH, Hetzer MW. PMID: 31178361; PMCID: PMC7289515.
      View in: PubMed   Mentions: 64     Fields:    Translation:AnimalsCells
    20. Direct Transfer of a Mycoplasma mycoides Genome to Yeast Is Enhanced by Removal of the Mycoides Glycerol Uptake Factor Gene glpF. ACS Synth Biol. 2019 02 15; 8(2):239-244. Karas BJ, Moreau NG, Deerinck TJ, Gibson DG, Venter JC, Smith HO, Glass JI. PMID: 30645947.
      View in: PubMed   Mentions: 6     Fields:    Translation:Cells
    21. Visualization of long-lived proteins reveals age mosaicism within nuclei of postmitotic cells. J Cell Biol. 2019 02 04; 218(2):433-444. Toyama BH, Arrojo E Drigo R, Lev-Ram V, Ramachandra R, Deerinck TJ, Lechene C, Ellisman MH, Hetzer MW. PMID: 30552100; PMCID: PMC6363465.
      View in: PubMed   Mentions: 52     Fields:    Translation:AnimalsCells
    22. Nano-structural analysis of engrafted human induced pluripotent stem cell-derived cardiomyocytes in mouse hearts using a genetic-probe APEX2. Biochem Biophys Res Commun. 2018 11 10; 505(4):1251-1256. Hatani T, Funakoshi S, Deerinck TJ, Bushong EA, Kimura T, Takeshima H, Ellisman MH, Hoshijima M, Yoshida Y. PMID: 30333092; PMCID: PMC7478876.
      View in: PubMed   Mentions: 4     Fields:    Translation:HumansAnimalsCells
    23. CDeep3M-Plug-and-Play cloud-based deep learning for image segmentation. Nat Methods. 2018 09; 15(9):677-680. Haberl MG, Churas C, Tindall L, Boassa D, Phan S, Bushong EA, Madany M, Akay R, Deerinck TJ, Peltier ST, Ellisman MH. PMID: 30171236; PMCID: PMC6548193.
      View in: PubMed   Mentions: 61     Fields:    
    24. Subgroup Characteristics of Marine Methane-Oxidizing ANME-2 Archaea and Their Syntrophic Partners as Revealed by Integrated Multimodal Analytical Microscopy. Appl Environ Microbiol. 2018 06 01; 84(11). McGlynn SE, Chadwick GL, O'Neill A, Mackey M, Thor A, Deerinck TJ, Ellisman MH, Orphan VJ. PMID: 29625978; PMCID: PMC5960974.
      View in: PubMed   Mentions: 13     Fields:    Translation:Cells
    25. Iron-specific Signal Separation from within Heavy Metal Stained Biological Samples Using X-Ray Microtomography with Polychromatic Source and Energy-Integrating Detectors. Sci Rep. 2018 05 15; 8(1):7553. Katchalski T, Case T, Kim KY, Ramachandra R, Bushong EA, Deerinck TJ, Haberl MG, Mackey MR, Peltier S, Castillon GA, Fujikawa N, Lawrence AR, Ellisman MH. PMID: 29765060; PMCID: PMC5953933.
      View in: PubMed   Mentions: 2     Fields:    Translation:AnimalsCells
    26. Electron microscopy using the genetically encoded APEX2 tag in cultured mammalian cells. Nat Protoc. 2017 Sep; 12(9):1792-1816. Martell JD, Deerinck TJ, Lam SS, Ellisman MH, Ting AY. PMID: 28796234; PMCID: PMC5851282.
      View in: PubMed   Mentions: 84     Fields:    Translation:HumansAnimalsCells
    27. ChromEMT: Visualizing 3D chromatin structure and compaction in interphase and mitotic cells. Science. 2017 07 28; 357(6349). Ou HD, Phan S, Deerinck TJ, Thor A, Ellisman MH, O'Shea CC. PMID: 28751582; PMCID: PMC5646685.
      View in: PubMed   Mentions: 378     Fields:    Translation:HumansCells
    28. Activity-dependent trafficking of lysosomes in dendrites and dendritic spines. J Cell Biol. 2017 08 07; 216(8):2499-2513. Goo MS, Sancho L, Slepak N, Boassa D, Deerinck TJ, Ellisman MH, Bloodgood BL, Patrick GN. PMID: 28630145; PMCID: PMC5551717.
      View in: PubMed   Mentions: 82     Fields:    Translation:HumansAnimalsCells
    29. Fragility of foot process morphology in kidney podocytes arises from chaotic spatial propagation of cytoskeletal instability. PLoS Comput Biol. 2017 03; 13(3):e1005433. Falkenberg CV, Azeloglu EU, Stothers M, Deerinck TJ, Chen Y, He JC, Ellisman MH, Hone JC, Iyengar R, Loew LM. PMID: 28301477; PMCID: PMC5373631.
      View in: PubMed   Mentions: 13     Fields:    Translation:HumansCells
    30. Spines of the porcupine fish: Structure, composition, and mechanical properties. J Mech Behav Biomed Mater. 2017 09; 73:38-49. Su FY, Bushong EA, Deerinck TJ, Seo K, Herrera S, Graeve OA, Kisailus D, Lubarda VA, McKittrick J. PMID: 28274703.
      View in: PubMed   Mentions: 2     Fields:    Translation:AnimalsCells
    31. Proximity Biotinylation as a Method for Mapping Proteins Associated with mtDNA in Living Cells. Cell Chem Biol. 2017 Mar 16; 24(3):404-414. Han S, Udeshi ND, Deerinck TJ, Svinkina T, Ellisman MH, Carr SA, Ting AY. PMID: 28238724; PMCID: PMC5886301.
      View in: PubMed   Mentions: 69     Fields:    Translation:HumansCells
    32. High resolution three-dimensional reconstruction of fibrotic skeletal muscle extracellular matrix. J Physiol. 2017 02 15; 595(4):1159-1171. Gillies AR, Chapman MA, Bushong EA, Deerinck TJ, Ellisman MH, Lieber RL. PMID: 27859324; PMCID: PMC5309386.
      View in: PubMed   Mentions: 36     Fields:    Translation:AnimalsCells
    33. Deceleration of probe beam by stage bias potential improves resolution of serial block-face scanning electron microscopic images. Adv Struct Chem Imaging. 2017; 2(1):11. Bouwer JC, Deerinck TJ, Bushong E, Astakhov V, Ramachandra R, Peltier ST, Ellisman MH. PMID: 27695667; PMCID: PMC5025511.
      View in: PubMed   Mentions: 13  
    34. Proteomic Analysis of Unbounded Cellular Compartments: Synaptic Clefts. Cell. 2016 Aug 25; 166(5):1295-1307.e21. Loh KH, Stawski PS, Draycott AS, Udeshi ND, Lehrman EK, Wilton DK, Svinkina T, Deerinck TJ, Ellisman MH, Stevens B, Carr SA, Ting AY. PMID: 27565350; PMCID: PMC5167540.
      View in: PubMed   Mentions: 179     Fields:    Translation:HumansAnimalsCells
    35. A split horseradish peroxidase for the detection of intercellular protein-protein interactions and sensitive visualization of synapses. Nat Biotechnol. 2016 07; 34(7):774-80. Martell JD, Yamagata M, Deerinck TJ, Phan S, Kwa CG, Ellisman MH, Sanes JR, Ting AY. PMID: 27240195; PMCID: PMC4942342.
      View in: PubMed   Mentions: 81     Fields:    Translation:AnimalsCells
    36. Corrigendum to 'Visualizing viral protein structures in cells using genetic probes for correlated light and electron microscopy' [Methods 90 (2015) 39-48]. Methods. 2016 Jul 15; 104:206. Ou HD, Deerinck TJ, Bushong E, Ellisman MH, O'Shea CC. PMID: 27221672.
      View in: PubMed   Mentions:    Fields:    
    37. Click-EM for imaging metabolically tagged nonprotein biomolecules. Nat Chem Biol. 2016 06; 12(6):459-65. Ngo JT, Adams SR, Deerinck TJ, Boassa D, Rodriguez-Rivera F, Palida SF, Bertozzi CR, Ellisman MH, Tsien RY. PMID: 27110681; PMCID: PMC4871776.
      View in: PubMed   Mentions: 36     Fields:    Translation:HumansCells
    38. Evidence-based green algal genomics reveals marine diversity and ancestral characteristics of land plants. BMC Genomics. 2016 Mar 31; 17:267. van Baren MJ, Bachy C, Reistetter EN, Purvine SO, Grimwood J, Sudek S, Yu H, Poirier C, Deerinck TJ, Kuo A, Grigoriev IV, Wong CH, Smith RD, Callister SJ, Wei CL, Schmutz J, Worden AZ. PMID: 27029936; PMCID: PMC4815162.
      View in: PubMed   Mentions: 39     Fields:    Translation:AnimalsCells
    39. Design and synthesis of a minimal bacterial genome. Science. 2016 Mar 25; 351(6280):aad6253. Hutchison CA, Chuang RY, Noskov VN, Assad-Garcia N, Deerinck TJ, Ellisman MH, Gill J, Kannan K, Karas BJ, Ma L, Pelletier JF, Qi ZQ, Richter RA, Strychalski EA, Sun L, Suzuki Y, Tsvetanova B, Wise KS, Smith HO, Glass JI, Merryman C, Gibson DG, Venter JC. PMID: 27013737.
      View in: PubMed   Mentions: 469     Fields:    Translation:Cells
    40. Visualizing viral protein structures in cells using genetic probes for correlated light and electron microscopy. Methods. 2015 Nov 15; 90:39-48. Ou HD, Deerinck TJ, Bushong E, Ellisman MH, O'Shea CC. PMID: 26066760; PMCID: PMC4655137.
      View in: PubMed   Mentions: 9     Fields:    Translation:HumansCells
    41. Designer diatom episomes delivered by bacterial conjugation. Nat Commun. 2015 Apr 21; 6:6925. Karas BJ, Diner RE, Lefebvre SC, McQuaid J, Phillips AP, Noddings CM, Brunson JK, Valas RE, Deerinck TJ, Jablanovic J, Gillard JT, Beeri K, Ellisman MH, Glass JI, Hutchison CA, Smith HO, Venter JC, Allen AE, Dupont CL, Weyman PD. PMID: 25897682; PMCID: PMC4411287.
      View in: PubMed   Mentions: 106     Fields:    Translation:AnimalsCells
    42. Correlative stochastic optical reconstruction microscopy and electron microscopy. PLoS One. 2015; 10(4):e0124581. Kim D, Deerinck TJ, Sigal YM, Babcock HP, Ellisman MH, Zhuang X. PMID: 25874453; PMCID: PMC4398493.
      View in: PubMed   Mentions: 40     Fields:    Translation:HumansAnimalsCells
    43. Directed evolution of APEX2 for electron microscopy and proximity labeling. Nat Methods. 2015 Jan; 12(1):51-4. Lam SS, Martell JD, Kamer KJ, Deerinck TJ, Ellisman MH, Mootha VK, Ting AY. PMID: 25419960; PMCID: PMC4296904.
      View in: PubMed   Mentions: 616     Fields:    Translation:HumansAnimalsCells
    44. A workflow for the automatic segmentation of organelles in electron microscopy image stacks. Front Neuroanat. 2014; 8:126. Perez AJ, Seyedhosseini M, Deerinck TJ, Bushong EA, Panda S, Tasdizen T, Ellisman MH. PMID: 25426032; PMCID: PMC4224098.
      View in: PubMed   Mentions: 34  
    45. Computational design of a red fluorophore ligase for site-specific protein labeling in living cells. Proc Natl Acad Sci U S A. 2014 Oct 28; 111(43):E4551-9. Liu DS, Nivón LG, Richter F, Goldman PJ, Deerinck TJ, Yao JZ, Richardson D, Phipps WS, Ye AZ, Ellisman MH, Drennan CL, Baker D, Ting AY. PMID: 25313043; PMCID: PMC4217414.
      View in: PubMed   Mentions: 28     Fields:    Translation:HumansAnimalsCells
    46. Three-dimensional reconstruction of skeletal muscle extracellular matrix ultrastructure. Microsc Microanal. 2014 Dec; 20(6):1835-40. Gillies AR, Bushong EA, Deerinck TJ, Ellisman MH, Lieber RL. PMID: 25275291; PMCID: PMC4267978.
      View in: PubMed   Mentions: 16     Fields:    Translation:AnimalsCells
    47. Molecular composition and ultrastructure of the caveolar coat complex. PLoS Biol. 2013; 11(8):e1001640. Ludwig A, Howard G, Mendoza-Topaz C, Deerinck T, Mackey M, Sandin S, Ellisman MH, Nichols BJ. PMID: 24013648; PMCID: PMC3754886.
      View in: PubMed   Mentions: 73     Fields:    Translation:HumansAnimalsCells
    48. Synaptic inputs compete during rapid formation of the calyx of Held: a new model system for neural development. J Neurosci. 2013 Aug 07; 33(32):12954-69. Holcomb PS, Hoffpauir BK, Hoyson MC, Jackson DR, Deerinck TJ, Marrs GS, Dehoff M, Wu J, Ellisman MH, Spirou GA. PMID: 23926251; PMCID: PMC3735879.
      View in: PubMed   Mentions: 65     Fields:    Translation:AnimalsCells
    49. Catastrophic nuclear envelope collapse in cancer cell micronuclei. Cell. 2013 Jul 03; 154(1):47-60. Hatch EM, Fischer AH, Deerinck TJ, Hetzer MW. PMID: 23827674; PMCID: PMC3749778.
      View in: PubMed   Mentions: 364     Fields:    Translation:HumansCells
    50. Loss of acinar cell IKKα triggers spontaneous pancreatitis in mice. J Clin Invest. 2013 May; 123(5):2231-43. Li N, Wu X, Holzer RG, Lee JH, Todoric J, Park EJ, Ogata H, Gukovskaya AS, Gukovsky I, Pizzo DP, VandenBerg S, Tarin D, Atay C, Arkan MC, Deerinck TJ, Moscat J, Diaz-Meco M, Dawson D, Erkan M, Kleeff J, Karin M. PMID: 23563314; PMCID: PMC3635720.
      View in: PubMed   Mentions: 66     Fields:    Translation:AnimalsCells
    51. Construction of a polarized neuron. J Physiol. 2013 Jul 01; 591(13):3145-50. Holcomb PS, Deerinck TJ, Ellisman MH, Spirou GA. PMID: 23339176; PMCID: PMC3717217.
      View in: PubMed   Mentions: 9     Fields:    Translation:AnimalsCells
    52. Engineered ascorbate peroxidase as a genetically encoded reporter for electron microscopy. Nat Biotechnol. 2012 Nov; 30(11):1143-8. Martell JD, Deerinck TJ, Sancak Y, Poulos TL, Mootha VK, Sosinsky GE, Ellisman MH, Ting AY. PMID: 23086203; PMCID: PMC3699407.
      View in: PubMed   Mentions: 338     Fields:    
    53. A structural basis for the assembly and functions of a viral polymer that inactivates multiple tumor suppressors. Cell. 2012 Oct 12; 151(2):304-19. Ou HD, Kwiatkowski W, Deerinck TJ, Noske A, Blain KY, Land HS, Soria C, Powers CJ, May AP, Shu X, Tsien RY, Fitzpatrick JA, Long JA, Ellisman MH, Choe S, O'Shea CC. PMID: 23063122; PMCID: PMC3681303.
      View in: PubMed   Mentions: 56     Fields:    Translation:HumansAnimalsCells
    54. Fibrinogen-induced perivascular microglial clustering is required for the development of axonal damage in neuroinflammation. Nat Commun. 2012; 3:1227. Davalos D, Ryu JK, Merlini M, Baeten KM, Le Moan N, Petersen MA, Deerinck TJ, Smirnoff DS, Bedard C, Hakozaki H, Gonias Murray S, Ling JB, Lassmann H, Degen JL, Ellisman MH, Akassoglou K. PMID: 23187627; PMCID: PMC3514498.
      View in: PubMed   Mentions: 311     Fields:    Translation:AnimalsCells
    55. Picking faces out of a crowd: genetic labels for identification of proteins in correlated light and electron microscopy imaging. Methods Cell Biol. 2012; 111:139-55. Ellisman MH, Deerinck TJ, Shu X, Sosinsky GE. PMID: 22857927; PMCID: PMC3532940.
      View in: PubMed   Mentions: 30     Fields:    Translation:HumansAnimalsCells
    56. Advancing the state of the art. Interview by Kristie Nybo. Biotechniques. 2011 Nov; 51(5):311. Deerinck T. PMID: 22054543.
      View in: PubMed   Mentions:    Fields:    Translation:HumansAnimals
    57. A genetically encoded tag for correlated light and electron microscopy of intact cells, tissues, and organisms. PLoS Biol. 2011 Apr; 9(4):e1001041. Shu X, Lev-Ram V, Deerinck TJ, Qi Y, Ramko EB, Davidson MW, Jin Y, Ellisman MH, Tsien RY. PMID: 21483721; PMCID: PMC3071375.
      View in: PubMed   Mentions: 364     Fields:    Translation:AnimalsCells
    58. Investigating synapse formation and function using human pluripotent stem cell-derived neurons. Proc Natl Acad Sci U S A. 2011 Feb 15; 108(7):3005-10. Kim JE, O'Sullivan ML, Sanchez CA, Hwang M, Israel MA, Brennand K, Deerinck TJ, Goldstein LS, Gage FH, Ellisman MH, Ghosh A. PMID: 21278334; PMCID: PMC3041068.
      View in: PubMed   Mentions: 80     Fields:    Translation:HumansAnimalsCells
    59. Labeling tetracysteine-tagged proteins with biarsenical dyes for live cell imaging. Cold Spring Harb Protoc. 2011 Jan 01; 2011(1):pdb.prot5547. Gaietta GM, Deerinck TJ, Ellisman MH. PMID: 21205847.
      View in: PubMed   Mentions: 2     Fields:    Translation:Cells
    60. Fluorescence photoconversion of biarsenical-labeled cells for correlated electron microscopy (EM). Cold Spring Harb Protoc. 2011 Jan 01; 2011(1):pdb.prot5548. Gaietta GM, Deerinck TJ, Ellisman MH. PMID: 21205848.
      View in: PubMed   Mentions: 2     Fields:    Translation:Cells
    61. Correlated live cell light and electron microscopy using tetracysteine tags and biarsenicals. Cold Spring Harb Protoc. 2011 Jan 01; 2011(1):pdb.top94. Gaietta GM, Deerinck TJ, Ellisman MH. PMID: 21205860.
      View in: PubMed   Mentions: 4     Fields:    
    62. Direct restriction of virus release and incorporation of the interferon-induced protein BST-2 into HIV-1 particles. PLoS Pathog. 2010 Mar 05; 6(3):e1000701. Fitzpatrick K, Skasko M, Deerinck TJ, Crum J, Ellisman MH, Guatelli J. PMID: 20221443; PMCID: PMC2832767.
      View in: PubMed   Mentions: 96     Fields:    Translation:HumansCells
    63. Structure-function studies of blood and air capillaries in chicken lung using 3D electron microscopy. Respir Physiol Neurobiol. 2010 Feb 28; 170(2):202-9. West JB, Fu Z, Deerinck TJ, Mackey MR, Obayashi JT, Ellisman MH. PMID: 20038456; PMCID: PMC2821748.
      View in: PubMed   Mentions: 38     Fields:    Translation:AnimalsCells
    64. The cytoplasmic accumulations of the cataract-associated mutant, Connexin50P88S, are long-lived and form in the endoplasmic reticulum. Exp Eye Res. 2009 Mar; 88(3):600-9. Lichtenstein A, Gaietta GM, Deerinck TJ, Crum J, Sosinsky GE, Beyer EC, Berthoud VM. PMID: 19073179; PMCID: PMC2695785.
      View in: PubMed   Mentions: 16     Fields:    Translation:HumansCells
    65. Quantum dots for tracking dendritic cells and priming an immune response in vitro and in vivo. PLoS One. 2008 Sep 29; 3(9):e3290. Sen D, Deerinck TJ, Ellisman MH, Parker I, Cahalan MD. PMID: 18820727; PMCID: PMC2538605.
      View in: PubMed   Mentions: 26     Fields:    Translation:AnimalsCells
    66. The application of fluorescent quantum dots to confocal, multiphoton, and electron microscopic imaging. Toxicol Pathol. 2008 Jan; 36(1):112-6. Deerinck TJ. PMID: 18337229; PMCID: PMC2771444.
      View in: PubMed   Mentions: 21     Fields:    Translation:HumansAnimals
    67. Regulation of spine morphology and spine density by NMDA receptor signaling in vivo. Proc Natl Acad Sci U S A. 2007 Dec 04; 104(49):19553-8. Ultanir SK, Kim JE, Hall BJ, Deerinck T, Ellisman M, Ghosh A. PMID: 18048342; PMCID: PMC2148327.
      View in: PubMed   Mentions: 109     Fields:    Translation:AnimalsCells
    68. Visualizing flock house virus infection in Drosophila cells with correlated fluorescence and electron microscopy. J Struct Biol. 2008 Mar; 161(3):439-46. Lanman J, Crum J, Deerinck TJ, Gaietta GM, Schneemann A, Sosinsky GE, Ellisman MH, Johnson JE. PMID: 17998167; PMCID: PMC2408891.
      View in: PubMed   Mentions: 32     Fields:    Translation:AnimalsCells
    69. The combination of chemical fixation procedures with high pressure freezing and freeze substitution preserves highly labile tissue ultrastructure for electron tomography applications. J Struct Biol. 2008 Mar; 161(3):359-71. Sosinsky GE, Crum J, Jones YZ, Lanman J, Smarr B, Terada M, Martone ME, Deerinck TJ, Johnson JE, Ellisman MH. PMID: 17962040; PMCID: PMC2459253.
      View in: PubMed   Mentions: 56     Fields:    Translation:AnimalsCells
    70. Isoform-specific PKA dynamics revealed by dye-triggered aggregation and DAKAP1alpha-mediated localization in living cells. Chem Biol. 2007 Sep; 14(9):1031-42. Martin BR, Deerinck TJ, Ellisman MH, Taylor SS, Tsien RY. PMID: 17884635.
      View in: PubMed   Mentions: 32     Fields:    Translation:HumansCells
    71. Spinophilin facilitates dephosphorylation of doublecortin by PP1 to mediate microtubule bundling at the axonal wrist. Cell. 2007 May 04; 129(3):579-91. Bielas SL, Serneo FF, Chechlacz M, Deerinck TJ, Perkins GA, Allen PB, Ellisman MH, Gleeson JG. PMID: 17482550; PMCID: PMC1920181.
      View in: PubMed   Mentions: 77     Fields:    Translation:HumansAnimalsCells
    72. Markers for correlated light and electron microscopy. Methods Cell Biol. 2007; 79:575-91. Sosinsky GE, Giepmans BN, Deerinck TJ, Gaietta GM, Ellisman MH. PMID: 17327175.
      View in: PubMed   Mentions: 33     Fields:    Translation:Cells
    73. Light and electron microscopic localization of multiple proteins using quantum dots. Methods Mol Biol. 2007; 374:43-53. Deerinck TJ, Giepmans BN, Smarr BL, Martone ME, Ellisman MH. PMID: 17237528.
      View in: PubMed   Mentions: 14     Fields:    Translation:Animals
    74. Golgi twins in late mitosis revealed by genetically encoded tags for live cell imaging and correlated electron microscopy. Proc Natl Acad Sci U S A. 2006 Nov 21; 103(47):17777-82. Gaietta GM, Giepmans BN, Deerinck TJ, Smith WB, Ngan L, Llopis J, Adams SR, Tsien RY, Ellisman MH. PMID: 17101980; PMCID: PMC1635977.
      View in: PubMed   Mentions: 56     Fields:    Translation:HumansCells
    75. STIM1 is a Ca2+ sensor that activates CRAC channels and migrates from the Ca2+ store to the plasma membrane. Nature. 2005 Oct 06; 437(7060):902-5. Zhang SL, Yu Y, Roos J, Kozak JA, Deerinck TJ, Ellisman MH, Stauderman KA, Cahalan MD. PMID: 16208375; PMCID: PMC1618826.
      View in: PubMed   Mentions: 652     Fields:    Translation:HumansAnimalsCells
    76. Correlated light and electron microscopic imaging of multiple endogenous proteins using Quantum dots. Nat Methods. 2005 Oct; 2(10):743-9. Giepmans BN, Deerinck TJ, Smarr BL, Jones YZ, Ellisman MH. PMID: 16179920.
      View in: PubMed   Mentions: 131     Fields:    Translation:AnimalsCells
    77. Development of a model for microphysiological simulations: small nodes of ranvier from peripheral nerves of mice reconstructed by electron tomography. Neuroinformatics. 2005; 3(2):133-62. Sosinsky GE, Deerinck TJ, Greco R, Buitenhuys CH, Bartol TM, Ellisman MH. PMID: 15988042.
      View in: PubMed   Mentions: 20     Fields:    Translation:AnimalsCells
    78. Hypophosphorylated SR splicing factors transiently localize around active nucleolar organizing regions in telophase daughter nuclei. J Cell Biol. 2004 Oct 11; 167(1):51-63. Bubulya PA, Prasanth KV, Deerinck TJ, Gerlich D, Beaudouin J, Ellisman MH, Ellenberg J, Spector DL. PMID: 15479736; PMCID: PMC2172523.
      View in: PubMed   Mentions: 33     Fields:    Translation:HumansCells
    79. Activity-dependent regulation of dendritic synthesis and trafficking of AMPA receptors. Nat Neurosci. 2004 Mar; 7(3):244-53. Ju W, Morishita W, Tsui J, Gaietta G, Deerinck TJ, Adams SR, Garner CC, Tsien RY, Ellisman MH, Malenka RC. PMID: 14770185.
      View in: PubMed   Mentions: 242     Fields:    Translation:AnimalsCells
    80. Regulation of membrane trafficking and subcellular organization of endocytic compartments revealed with FM1-43 in resting and activated human T cells. Exp Cell Res. 2003 Nov 15; 291(1):150-66. Fomina AF, Deerinck TJ, Ellisman MH, Cahalan MD. PMID: 14597416; PMCID: PMC2749753.
      View in: PubMed   Mentions: 39     Fields:    Translation:HumansCells
    81. ER-to-Golgi carriers arise through direct en bloc protrusion and multistage maturation of specialized ER exit domains. Dev Cell. 2003 Oct; 5(4):583-94. Mironov AA, Mironov AA, Beznoussenko GV, Trucco A, Lupetti P, Smith JD, Geerts WJ, Koster AJ, Burger KN, Martone ME, Deerinck TJ, Ellisman MH, Luini A. PMID: 14536060.
      View in: PubMed   Mentions: 78     Fields:    Translation:HumansAnimalsCells
    82. Tetracysteine genetic tags complexed with biarsenical ligands as a tool for investigating gap junction structure and dynamics. Cell Commun Adhes. 2003 Jul-Dec; 10(4-6):181-6. Sosinsky GE, Gaietta GM, Hand G, Deerinck TJ, Han A, Mackey M, Adams SR, Bouwer J, Tsien RY, Ellisman MH. PMID: 14681013.
      View in: PubMed   Mentions: 8     Fields:    Translation:HumansCells
    83. Multicolor and electron microscopic imaging of connexin trafficking. Science. 2002 Apr 19; 296(5567):503-7. Gaietta G, Deerinck TJ, Adams SR, Bouwer J, Tour O, Laird DW, Sosinsky GE, Tsien RY, Ellisman MH. PMID: 11964472.
      View in: PubMed   Mentions: 328     Fields:    Translation:HumansAnimalsCells
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