Christopher Lee

Title(s)	Postdoctoral Scholar, Mechanical and Aerospace Engineering
School	Vc-academic Affairs
Address	9500 Gilman Drive # La Jolla CA 92093
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Publications

Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.

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PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.

ActuAtor, a Listeria-inspired molecular tool for physical manipulation of intracellular organizations through de novo actin polymerization. Cell Rep. 2023 10 31; 42(10):113089. Nakamura H, Rho E, Lee CT, Itoh K, Deng D, Watanabe S, Razavi S, Matsubayashi HT, Zhu C, Jung E, Rangamani P, Watanabe S, Inoue T. PMID: 37734382.

View in: PubMed Mentions: Fields:
Cel Cell Biology Mol Molecular Biology
Translation:Cells
Cristae formation is a mechanical buckling event controlled by the inner membrane lipidome. bioRxiv. 2023 Sep 02. Venkatraman K, Lee CT, Garcia GC, Mahapatra A, Milshteyn D, Perkins G, Kim KY, Pasolli HA, Phan S, Lippincott-Schwartz J, Ellisman MH, Rangamani P, Budin I. PMID: 36993370; PMCID: PMC10054968.

View in: PubMed Mentions:
Membrane mechanics dictate axonal morphology and function. bioRxiv. 2023 Jul 21. Griswold JM, Bonilla-Quintana M, Pepper R, Lee CT, Raychaudhuri S, Ma S, Gan Q, Syed S, Zhu C, Bell M, Suga M, Yamaguchi Y, Chéreau R, Nägerl UV, Knott G, Rangamani P, Watanabe S. PMID: 37503105; PMCID: PMC10370128.

View in: PubMed Mentions:
The ins and outs of membrane bending by intrinsically disordered proteins. Sci Adv. 2023 Jul 07; 9(27):eadg3485. Yuan F, Lee CT, Sangani A, Houser JR, Wang L, Lafer EM, Rangamani P, Stachowiak JC. PMID: 37418523; PMCID: PMC10328403.

View in: PubMed Mentions: 3 Fields:
Sci Science
Spatiotemporal modelling reveals geometric dependence of AMPAR dynamics on dendritic spine morphology. J Physiol. 2023 08; 601(15):3329-3350. Bell MK, Lee CT, Rangamani P. PMID: 36326020.

View in: PubMed Mentions: 1 Fields:
Phy Physiology
Translation:Cells
Role of the Triplet State and Protein Dynamics in the Formation and Stability of the Tryptophan Radical in an Apoazurin Mutant. J Phys Chem B. 2022 09 15; 126(36):6751-6761. López-Peña I, Lee CT, Rivera JJ, Kim JE. PMID: 35977067; PMCID: PMC9483921.

View in: PubMed Mentions: 2 Fields:
Che Chemistry
Dendritic spine morphology regulates calcium-dependent synaptic weight change. J Gen Physiol. 2022 08 01; 154(8). Bell MK, Holst MV, Lee CT, Rangamani P. PMID: 35819365; PMCID: PMC9280073.

View in: PubMed Mentions: 2 Fields:
Phy Physiology
Translation:Cells
Mem3DG: Modeling membrane mechanochemical dynamics in 3D using discrete differential geometry. Biophys Rep (N Y). 2022 Sep 14; 2(3). Zhu C, Lee CT, Rangamani P. PMID: 36157269; PMCID: PMC9495267.

View in: PubMed Mentions: 4
Benchmarking ensemble docking methods in D3R Grand Challenge 4. J Comput Aided Mol Des. 2022 02; 36(2):87-99. Gan JL, Kumar D, Chen C, Taylor BC, Jagger BR, Amaro RE, Lee CT. PMID: 35199221; PMCID: PMC8907095.

View in: PubMed Mentions: Fields:
Bio Biomedical Engineering Mol Molecular Biology
Translation:Humans Cells
Morphological principles of neuronal mitochondria. J Comp Neurol. 2022 04; 530(6):886-902. Mendelsohn R, Garcia GC, Bartol TM, Lee CT, Khandelwal P, Liu E, Spencer DJ, Husar A, Bushong EA, Phan S, Perkins G, Ellisman MH, Skupin A, Sejnowski TJ, Rangamani P. PMID: 34608995; PMCID: PMC8831469.

View in: PubMed Mentions: 5 Fields:
Neu Neurology
Translation:Animals Cells
Independent Markov decomposition: Toward modeling kinetics of biomolecular complexes. Proc Natl Acad Sci U S A. 2021 08 03; 118(31). Hempel T, Del Razo MJ, Lee CT, Taylor BC, Amaro RE, Noé F. PMID: 34321356; PMCID: PMC8346863.

View in: PubMed Mentions: 4 Fields:
Sci Science
Translation:Cells
Value of models for membrane budding. Curr Opin Cell Biol. 2021 08; 71:38-45. Lee CT, Akamatsu M, Rangamani P. PMID: 33706232; PMCID: PMC8328869.

View in: PubMed Mentions: 3 Fields:
Cel Cell Biology
Translation:Cells
3D mesh processing using GAMer 2 to enable reaction-diffusion simulations in realistic cellular geometries. PLoS Comput Biol. 2020 04; 16(4):e1007756. Lee CT, Laughlin JG, Angliviel de La Beaumelle N, Amaro RE, McCammon JA, Ramamoorthi R, Holst M, Rangamani P. PMID: 32251448; PMCID: PMC7162555.

View in: PubMed Mentions: 16 Fields:
Com Computational Biology
Translation:Humans Cells
An Open-Source Mesh Generation Platform for Biophysical Modeling Using Realistic Cellular Geometries. Biophys J. 2020 03 10; 118(5):1003-1008. Lee CT, Laughlin JG, Moody JB, Amaro RE, McCammon JA, Holst M, Rangamani P. PMID: 32032503; PMCID: PMC7063475.

View in: PubMed Mentions: 9 Fields:
Bio Biophysics
Applications and Challenges of Machine Learning to Enable Realistic Cellular Simulations. Front Phys. 2020 Jan; 7. Vasan R, Rowan MP, Lee CT, Johnson GR, Rangamani P, Holst M. PMID: 36188416; PMCID: PMC9521042.

View in: PubMed Mentions:
The Implementation of the Colored Abstract Simplicial Complex and its Application to Mesh Generation. ACM Trans Math Softw. 2019 Aug; 45(3). Lee CT, Moody JB, Amaro RE, McCammon JA, Holst MJ. PMID: 31474782; PMCID: PMC6716611.

View in: PubMed Mentions: 3
Structural basis for ligand modulation of the CCR2 conformational landscape. Proc Natl Acad Sci U S A. 2019 04 23; 116(17):8131-8136. Taylor BC, Lee CT, Amaro RE. PMID: 30975755; PMCID: PMC6486717.

View in: PubMed Mentions: 14 Fields:
Sci Science
Translation:Humans Cells
Exascale Computing: A New Dawn for Computational Biology. Comput Sci Eng. 2018 Sep-Oct; 20(5):18-25. Lee CT, Amaro RE. PMID: 30983889; PMCID: PMC6458592.

View in: PubMed Mentions: 8
Quantitative Ranking of Ligand Binding Kinetics with a Multiscale Milestoning Simulation Approach. J Phys Chem Lett. 2018 Sep 06; 9(17):4941-4948. Jagger BR, Lee CT, Amaro RE. PMID: 30070844; PMCID: PMC6443090.

View in: PubMed Mentions: 14 Fields:
Che Chemistry
Two Relations to Estimate Membrane Permeability Using Milestoning. J Phys Chem B. 2016 08 25; 120(33):8606-16. Votapka LW, Lee CT, Amaro RE. PMID: 27154639; PMCID: PMC5002937.

View in: PubMed Mentions: 22 Fields:
Che Chemistry
Translation:Cells
Simulation-Based Approaches for Determining Membrane Permeability of Small Compounds. J Chem Inf Model. 2016 04 25; 56(4):721-33. Lee CT, Comer J, Herndon C, Leung N, Pavlova A, Swift RV, Tung C, Rowley CN, Amaro RE, Chipot C, Wang Y, Gumbart JC. PMID: 27043429; PMCID: PMC5280572.

View in: PubMed Mentions: 63 Fields:
Che Chemistry Med Medical Informatics
Translation:Cells
Emerging Computational Methods for the Rational Discovery of Allosteric Drugs. Chem Rev. 2016 06 08; 116(11):6370-90. Wagner JR, Lee CT, Durrant JD, Malmstrom RD, Feher VA, Amaro RE. PMID: 27074285; PMCID: PMC4901368.

View in: PubMed Mentions: 72 Fields:
Che Chemistry
Translation:Cells
On the Application of Molecular-Dynamics Based Markov State Models to Functional Proteins. J Chem Theory Comput. 2014 Jul 08; 10(7):2648-2657. Malmstrom RD, Lee CT, Van Wart A, Amaro RE. PMID: 25473382; PMCID: PMC4248791.

View in: PubMed Mentions: 35 Fields:
Bio Biochemistry Che Chemistry