Takaki Komiyama

Title(s)Professor, Neurosciences
SchoolVc-health Sciences-schools
Address9500 Gilman Drive #
La Jolla CA 92093
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    Correlated light and ultrastructural imaging of learning-related synaptic plasticity
    NIH R21NS112750Jun 1, 2020 - Nov 30, 2021
    Role: Principal Investigator
    Inter-area communications in a decision-making circuit
    NIH R03MH120426May 1, 2020 - Apr 30, 2022
    Role: Principal Investigator
    Context-dependent plasticity of adult-born neurons
    NIH R01DC018545Mar 1, 2020 - Feb 28, 2025
    Role: Principal Investigator
    CRISPR-based mosaic analysis of neuromodulatory control of learning-related plasticity
    NIH R21NS109722Apr 1, 2019 - Mar 31, 2021
    Role: Principal Investigator
    Network basis of action selection
    NIH U01NS094342Sep 30, 2015 - Aug 31, 2018
    Role: Principal Investigator
    Experience-driven plasticity of visual circuits
    NIH R01EY025349Aug 1, 2015 - Jul 31, 2021
    Role: Principal Investigator
    Experience-driven plasticity of olfactory bulb odor representations
    NIH R01DC014690Jul 1, 2015 - Jun 30, 2021
    Role: Principal Investigator
    Cortical Control of Motor Learning
    NIH R01NS091010Feb 1, 2015 - Jan 31, 2025
    Role: Principal Investigator
    Chronic imaging of odor-evoked activity in olfactory bulb circuits of awake mice
    NIH R21DC012641Jul 1, 2012 - Jun 30, 2015
    Role: Principal Investigator

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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    1. FARCI: Fast and Robust Connectome Inference. Brain Sci. 2021 Nov 24; 11(12). Meamardoost S, Bhattacharya M, Hwang EJ, Komiyama T, Mewes C, Wang L, Zhang Y, Gunawan R. PMID: 34942857; PMCID: PMC8699247.
      View in: PubMed   Mentions:
    2. Wide-field calcium imaging of cortex-wide activity in awake, head-fixed mice. STAR Protoc. 2021 Dec 17; 2(4):100973. Ren C, Komiyama T. PMID: 34849490; PMCID: PMC8608657.
      View in: PubMed   Mentions:
    3. Context-dependent persistency as a coding mechanism for robust and widely distributed value coding. Neuron. 2021 Nov 18. Hattori R, Komiyama T. PMID: 34818514.
      View in: PubMed   Mentions:
    4. Decoding of cortex-wide brain activity from local recordings of neural potentials. J Neural Eng. 2021 Oct 27. Liu X, Ren C, Huang Z, Wilson M, Kim JH, Lu Y, Ramezani M, Komiyama T, Kuzum D. PMID: 34706356.
      View in: PubMed   Mentions:
    5. Disengagement of Motor Cortex during Long-Term Learning Tracks the Performance Level of Learned Movements. J Neurosci. 2021 Aug 18; 41(33):7029-7047. Hwang EJ, Dahlen JE, Mukundan M, Komiyama T. PMID: 34244359.
      View in: PubMed   Mentions:    Fields:    
    6. Characterizing Cortex-Wide Dynamics with Wide-Field Calcium Imaging. J Neurosci. 2021 May 12; 41(19):4160-4168. Ren C, Komiyama T. PMID: 33893217.
      View in: PubMed   Mentions: 1     Fields:    
    7. Multimodal neural recordings with Neuro-FITM uncover diverse patterns of cortical-hippocampal interactions. Nat Neurosci. 2021 06; 24(6):886-896. Liu X, Ren C, Lu Y, Liu Y, Kim JH, Leutgeb S, Komiyama T, Kuzum D. PMID: 33875893.
      View in: PubMed   Mentions: 1     Fields:    Translation:Animals
    8. Autonomous Computing Materials. ACS Nano. 2021 03 23; 15(3):3586-3592. Bathe M, Hernandez R, Komiyama T, Machiraju R, Neogi S. PMID: 33636971.
      View in: PubMed   Mentions:    Fields:    
    9. Context-dependent plasticity of adult-born neurons regulated by cortical feedback. Sci Adv. 2020 Oct; 6(42). Wu A, Yu B, Chen Q, Matthews GA, Lu C, Campbell E, Tye KM, Komiyama T. PMID: 33067236.
      View in: PubMed   Mentions:    Fields:    
    10. Stability of motor cortex network states during learning-associated neural reorganizations. J Neurophysiol. 2020 11 01; 124(5):1327-1342. Ma Z, Liu H, Komiyama T, Wessel R. PMID: 32937084.
      View in: PubMed   Mentions:    Fields:    Translation:AnimalsCells
    11. Evaluation of Durability of Transparent Graphene Electrodes Fabricated on Different Flexible Substrates for Chronic In Vivo Experiments. IEEE Trans Biomed Eng. 2020 11; 67(11):3203-3210. Ding D, Lu Y, Zhao R, Liu X, De-Eknamkul C, Ren C, Mehrsa A, Komiyama T, Kuzum D. PMID: 32191878.
      View in: PubMed   Mentions:    Fields:    Translation:Animals
    12. Plasticity in olfactory bulb circuits. Curr Opin Neurobiol. 2020 10; 64:17-23. Wu A, Yu B, Komiyama T. PMID: 32062045.
      View in: PubMed   Mentions: 3     Fields:    Translation:Animals
    13. Corticostriatal Flow of Action Selection Bias. Neuron. 2019 12 18; 104(6):1126-1140.e6. Hwang EJ, Link TD, Hu YY, Lu S, Wang EH, Lilascharoen V, Aronson S, O'Neil K, Lim BK, Komiyama T. PMID: 31706697.
      View in: PubMed   Mentions: 10     Fields:    Translation:Animals
    14. Disengagement of motor cortex from movement control during long-term learning. Sci Adv. 2019 10; 5(10):eaay0001. Hwang EJ, Dahlen JE, Hu YY, Aguilar K, Yu B, Mukundan M, Mitani A, Komiyama T. PMID: 31693007.
      View in: PubMed   Mentions: 5     Fields:    Translation:Animals
    15. Area-Specificity and Plasticity of History-Dependent Value Coding During Learning. Cell. 2019 06 13; 177(7):1858-1872.e15. Hattori R, Danskin B, Babic Z, Mlynaryk N, Komiyama T. PMID: 31080067.
      View in: PubMed   Mentions: 22     Fields:    Translation:AnimalsCells
    16. Real-Time Processing of Two-Photon Calcium Imaging Data Including Lateral Motion Artifact Correction. Front Neuroinform. 2018; 12:98. Mitani A, Komiyama T. PMID: 30618703.
      View in: PubMed   Mentions: 9  
    17. Awake Mouse Imaging: From Two-Photon Microscopy to Blood Oxygen Level-Dependent Functional Magnetic Resonance Imaging. Biol Psychiatry Cogn Neurosci Neuroimaging. 2019 06; 4(6):533-542. Desjardins M, Kiliç K, Thunemann M, Mateo C, Holland D, Ferri CGL, Cremonesi JA, Li B, Cheng Q, Weldy KL, Saisan PA, Kleinfeld D, Komiyama T, Liu TT, Bussell R, Wong EC, Scadeng M, Dunn AK, Boas DA, Sakadžic S, Mandeville JB, Buxton RB, Dale AM, Devor A. PMID: 30691968.
      View in: PubMed   Mentions: 14     Fields:    Translation:Animals
    18. Ultra-low Impedance Graphene Microelectrodes with High Optical Transparency for Simultaneous Deep 2-photon Imaging in Transgenic Mice. Adv Funct Mater. 2018 Aug 01; 28(31). Lu Y, Liu X, Hattori R, Ren C, Zhang X, Komiyama T, Kuzum D. PMID: 34084100.
      View in: PubMed   Mentions: 1  
    19. Adult-born neurons facilitate olfactory bulb pattern separation during task engagement. Elife. 2018 03 13; 7. Li WL, Chu MW, Wu A, Suzuki Y, Imayoshi I, Komiyama T. PMID: 29533179.
      View in: PubMed   Mentions: 15     Fields:    Translation:AnimalsCells
    20. Brain-Computer Interface with Inhibitory Neurons Reveals Subtype-Specific Strategies. Curr Biol. 2018 01 08; 28(1):77-83.e4. Mitani A, Dong M, Komiyama T. PMID: 29249656.
      View in: PubMed   Mentions: 6     Fields:    Translation:AnimalsCells
    21. History-based action selection bias in posterior parietal cortex. Nat Commun. 2017 11 01; 8(1):1242. Hwang EJ, Dahlen JE, Mukundan M, Komiyama T. PMID: 29089500.
      View in: PubMed   Mentions: 33     Fields:    Translation:Animals
    22. Lack of Pattern Separation in Sensory Inputs to the Olfactory Bulb during Perceptual Learning. eNeuro. 2017 Sep-Oct; 4(5). Chu MW, Li WL, Komiyama T. PMID: 28955724.
      View in: PubMed   Mentions: 5     Fields:    Translation:AnimalsCells
    23. Functions and dysfunctions of neocortical inhibitory neuron subtypes. Nat Neurosci. 2017 Aug 29; 20(9):1199-1208. Hattori R, Kuchibhotla KV, Froemke RC, Komiyama T. PMID: 28849791.
      View in: PubMed   Mentions: 38     Fields:    Translation:HumansCells
    24. Reorganization of corticospinal output during motor learning. Nat Neurosci. 2017 Aug; 20(8):1133-1141. Peters AJ, Lee J, Hedrick NG, O'Neil K, Komiyama T. PMID: 28671694.
      View in: PubMed   Mentions: 29     Fields:    Translation:AnimalsCells
    25. Neuromodulation in Chemosensory Pathways. Chem Senses. 2017 Jun 01; 42(5):375-379. McIntyre JC, Thiebaud N, McGann JP, Komiyama T, Rothermel M. PMID: 28379355.
      View in: PubMed   Mentions: 11     Fields:    Translation:AnimalsCells
    26. Transformation of Cortex-wide Emergent Properties during Motor Learning. Neuron. 2017 May 17; 94(4):880-890.e8. Makino H, Ren C, Liu H, Kim AN, Kondapaneni N, Liu X, Kuzum D, Komiyama T. PMID: 28521138.
      View in: PubMed   Mentions: 54     Fields:    Translation:Animals
    27. Learning in the Rodent Motor Cortex. Annu Rev Neurosci. 2017 07 25; 40:77-97. Peters AJ, Liu H, Komiyama T. PMID: 28375768.
      View in: PubMed   Mentions: 24     Fields:    Translation:AnimalsCells
    28. Circuit Mechanisms of Sensorimotor Learning. Neuron. 2016 Nov 23; 92(4):705-721. Makino H, Hwang EJ, Hedrick NG, Komiyama T. PMID: 27883902.
      View in: PubMed   Mentions: 40     Fields:    Translation:HumansAnimals
    29. Balancing the Robustness and Efficiency of Odor Representations during Learning. Neuron. 2016 Oct 05; 92(1):174-186. Chu MW, Li WL, Komiyama T, Chu MW, Li WL, Komiyama T. PMID: 27667005; PMCID: PMC5061050.
      View in: PubMed   Mentions: 33     Fields:    Translation:AnimalsCells
    30. Learning enhances the relative impact of top-down processing in the visual cortex. Nat Neurosci. 2015 Aug; 18(8):1116-22. Hanna RF, Ward TJ, Chow DS, Lagana SM, Moreira RK, Emond JC, Weintraub JL, Prince MR, Makino H, Komiyama T. PMID: 26167904; PMCID: PMC4523093.
      View in: PubMed   Mentions: 83     Fields:    Translation:AnimalsCells
    31. Subtype-specific plasticity of inhibitory circuits in motor cortex during motor learning. Nat Neurosci. 2015 Aug; 18(8):1109-15. Chen SX, Kim AN, Peters AJ, Komiyama T, Chen SX, Kim AN, Peters AJ, Komiyama T. PMID: 26098758; PMCID: PMC4519436.
      View in: PubMed   Mentions: 87     Fields:    Translation:AnimalsCells
    32. Broadcasting of cortical activity to the olfactory bulb. Cell Rep. 2015 Feb 24; 10(7):1032-9. Boyd AM, Kato HK, Komiyama T, Isaacson JS, Boyd AM, Kato HK, Komiyama T, Isaacson JS. PMID: 25704808; PMCID: PMC4342299.
      View in: PubMed   Mentions: 37     Fields:    Translation:Animals
    33. Emergence of reproducible spatiotemporal activity during motor learning. Nature. 2014 Jun 12; 510(7504):263-7. Peters AJ, Chen SX, Komiyama T, Peters AJ, Chen SX, Komiyama T. PMID: 24805237.
      View in: PubMed   Mentions: 146     Fields:    Translation:AnimalsCells
    34. Procedures for behavioral experiments in head-fixed mice. PLoS One. 2014; 9(2):e88678. Guo ZV, Hires SA, Li N, O'Connor DH, Komiyama T, Ophir E, Huber D, Bonardi C, Morandell K, Gutnisky D, Peron S, Xu NL, Cox J, Svoboda K, Guo ZV, Hires SA, Li N, O'Connor DH, Komiyama T, Ophir E, Huber D, Bonardi C, Morandell K, Gutnisky D, Peron S, Xu NL, Cox J, Svoboda K. PMID: 24520413; PMCID: PMC3919818.
      View in: PubMed   Mentions: 117     Fields:    Translation:HumansAnimals
    35. Parvalbumin-expressing interneurons linearly control olfactory bulb output. Neuron. 2013 Dec 04; 80(5):1218-31. Kato HK, Gillet SN, Peters AJ, Isaacson JS, Komiyama T, Kato HK, Gillet SN, Peters AJ, Isaacson JS, Komiyama T. PMID: 24239124; PMCID: PMC3884945.
      View in: PubMed   Mentions: 90     Fields:    Translation:AnimalsCells
    36. Dynamic sensory representations in the olfactory bulb: modulation by wakefulness and experience. Neuron. 2012 Dec 06; 76(5):962-75. Kato HK, Chu MW, Isaacson JS, Komiyama T, Kato HK, Chu MW, Isaacson JS, Komiyama T. PMID: 23217744; PMCID: PMC3523713.
      View in: PubMed   Mentions: 106     Fields:    Translation:HumansAnimalsCells
    37. Secreted semaphorins from degenerating larval ORN axons direct adult projection neuron dendrite targeting. Neuron. 2011 Dec 08; 72(5):734-47. Sweeney LB, Chou YH, Wu Z, Joo W, Komiyama T, Potter CJ, Kolodkin AL, Garcia KC, Luo L, Sweeney LB, Chou YH, Wu Z, Joo W, Komiyama T, Potter CJ, Kolodkin AL, Garcia KC, Luo L. PMID: 22153371; PMCID: PMC3365565.
      View in: PubMed   Mentions: 38     Fields:    Translation:AnimalsCells
    38. Learning-related fine-scale specificity imaged in motor cortex circuits of behaving mice. Nature. 2010 Apr 22; 464(7292):1182-6. Komiyama T, Sato TR, O'Connor DH, Zhang YX, Huber D, Hooks BM, Gabitto M, Svoboda K, Komiyama T, Sato TR, O'Connor DH, Zhang YX, Huber D, Hooks BM, Gabitto M, Svoboda K. PMID: 20376005.
      View in: PubMed   Mentions: 189     Fields:    Translation:AnimalsCells
    39. Vibrissa-based object localization in head-fixed mice. J Neurosci. 2010 Feb 03; 30(5):1947-67. O'Connor DH, Clack NG, Huber D, Komiyama T, Myers EW, Svoboda K, O'Connor DH, Clack NG, Huber D, Komiyama T, Myers EW, Svoboda K. PMID: 20130203; PMCID: PMC6634009.
      View in: PubMed   Mentions: 142     Fields:    Translation:Animals
    40. Lola regulates Drosophila olfactory projection neuron identity and targeting specificity. Neural Dev. 2007 Jul 16; 2:14. Spletter ML, Liu J, Liu J, Su H, Giniger E, Komiyama T, Quake S, Luo L, Spletter ML, Liu J, Liu J, Su H, Giniger E, Komiyama T, Quake S, Luo L. PMID: 17634136; PMCID: PMC1947980.
      View in: PubMed   Mentions: 32     Fields:    Translation:AnimalsCells
    41. Intrinsic control of precise dendritic targeting by an ensemble of transcription factors. Curr Biol. 2007 Feb 06; 17(3):278-85. Komiyama T, Luo L, Komiyama T, Luo L. PMID: 17276922.
      View in: PubMed   Mentions: 43     Fields:    Translation:AnimalsCells
    42. Graded expression of semaphorin-1a cell-autonomously directs dendritic targeting of olfactory projection neurons. Cell. 2007 Jan 26; 128(2):399-410. Komiyama T, Sweeney LB, Schuldiner O, Garcia KC, Luo L, Komiyama T, Sweeney LB, Schuldiner O, Garcia KC, Luo L. PMID: 17254975.
      View in: PubMed   Mentions: 87     Fields:    Translation:AnimalsCells
    43. Temporal target restriction of olfactory receptor neurons by Semaphorin-1a/PlexinA-mediated axon-axon interactions. Neuron. 2007 Jan 18; 53(2):185-200. Sweeney LB, Couto A, Chou YH, Berdnik D, Dickson BJ, Luo L, Komiyama T, Sweeney LB, Couto A, Chou YH, Berdnik D, Dickson BJ, Luo L, Komiyama T. PMID: 17224402.
      View in: PubMed   Mentions: 71     Fields:    Translation:AnimalsCells
    44. Development of wiring specificity in the olfactory system. Curr Opin Neurobiol. 2006 Feb; 16(1):67-73. Komiyama T, Luo L, Komiyama T, Luo L. PMID: 16377177.
      View in: PubMed   Mentions: 49     Fields:    Translation:AnimalsCells
    45. Development of wiring specificity of the Drosophila olfactory system. Chem Senses. 2005 Jan; 30 Suppl 1:i94. Hanna RF, Ward TJ, Chow DS, Lagana SM, Moreira RK, Emond JC, Weintraub JL, Prince MR, Jefferis GS, Marin EC, Komiyama T, Zhu H, Chihara T, Berdnik D, Luo L. PMID: 15738213.
      View in: PubMed   Mentions: 3     Fields:    Translation:AnimalsCells
    46. Olfactory receptor neuron axon targeting: intrinsic transcriptional control and hierarchical interactions. Nat Neurosci. 2004 Aug; 7(8):819-25. Komiyama T, Carlson JR, Luo L, Komiyama T, Carlson JR, Luo L. PMID: 15247920.
      View in: PubMed   Mentions: 47     Fields:    Translation:AnimalsCells
    47. Neuroscience. Calcium and CREST for healthy dendrites. Science. 2004 Jan 09; 303(5655):179-81. Jefferis GS, Komiyama T, Luo L, Jefferis GS, Komiyama T, Luo L. PMID: 14715999.
      View in: PubMed   Mentions: 1     Fields:    Translation:AnimalsCells
    48. From lineage to wiring specificity. POU domain transcription factors control precise connections of Drosophila olfactory projection neurons. Cell. 2003 Jan 24; 112(2):157-67. Komiyama T, Johnson WA, Luo L, Jefferis GS, Komiyama T, Johnson WA, Luo L, Jefferis GS. PMID: 12553905.
      View in: PubMed   Mentions: 54     Fields:    Translation:AnimalsCells
    49. BET, a novel neuronal transmembrane protein with multiple EGF-like motifs. Neuroreport. 2002 May 07; 13(6):909-15. Nishizumi H, Komiyama T, Miyabayashi T, Sakano S, Sakano H, Nishizumi H, Komiyama T, Miyabayashi T, Sakano S, Sakano H. PMID: 11997712.
      View in: PubMed   Mentions: 6     Fields:    Translation:HumansAnimalsCells
    50. Representation of the glomerular olfactory map in the Drosophila brain. Cell. 2002 Apr 19; 109(2):243-55. Marin EC, Jefferis GS, Komiyama T, Zhu H, Luo L, Marin EC, Jefferis GS, Komiyama T, Zhu H, Luo L. PMID: 12007410.
      View in: PubMed   Mentions: 158     Fields:    Translation:AnimalsCells
    51. Predicting the reactivity of proteins from their sequence alone: Kazal family of protein inhibitors of serine proteinases. Proc Natl Acad Sci U S A. 2001 Feb 13; 98(4):1410-5. Lu SM, Lu W, Qasim MA, Anderson S, Apostol I, Ardelt W, Bigler T, Chiang YW, Cook J, James MN, Kato I, Kelly C, Kohr W, Komiyama T, Lin TY, Ogawa M, Otlewski J, Park SJ, Qasim S, Ranjbar M, Tashiro M, Warne N, Whatley H, Wieczorek A, Wieczorek M, Wilusz T, Wynn R, Zhang W, Laskowski M, Lu SM, Lu W, Qasim MA, Anderson S, Apostol I, Ardelt W, Bigler T, Chiang YW, Cook J, James MN, Kato I, Kelly C, Kohr W, Komiyama T, Lin TY, Ogawa M, Otlewski J, Park SJ, Qasim S, Ranjbar M, Tashiro M, Warne N, Whatley H, Wieczorek A, Wieczorek M, Wilusz T, Wynn R, Zhang W, Laskowski M. PMID: 11171964; PMCID: PMC29270.
      View in: PubMed   Mentions: 23     Fields:    Translation:HumansAnimalsCells
    52. Cutaneous reflexes during human gait: electromyographic and kinematic responses to electrical stimulation. J Neurophysiol. 1997 Jun; 77(6):3311-25. Zehr EP, Komiyama T, Stein RB. PMID: 9212277.
      View in: PubMed   Mentions:
    53. A novel yeast gene, RHK1, is involved in the synthesis of the cell wall receptor for the HM-1 killer toxin that inhibits beta-1,3-glucan synthesis. Mol Gen Genet. 1997 Mar 26; 254(2):139-47. Kimura T, Kitamoto N, Kito Y, Iimura Y, Shirai T, Komiyama T, Furuichi Y, Sakka K, Ohmiya K, Kimura T, Kitamoto N, Kito Y, Iimura Y, Shirai T, Komiyama T, Furuichi Y, Sakka K, Ohmiya K. PMID: 9108275.
      View in: PubMed   Mentions: 3     Fields:    Translation:HumansAnimalsCells
    54. The differences in human spinal motoneuron excitability during the foreperiod of a motor task. Exp Brain Res. 1990; 79(2):357-64. Komiyama T, Tanaka R. PMID: 2323381.
      View in: PubMed   Mentions:
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