Takaki Komiyama

Title(s)Professor, Neurosciences
SchoolVc-health Sciences-schools
Address9500 Gilman Drive #
La Jolla CA 92093
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    Collapse Overview 
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    Collapse Research 
    Collapse Research Activities and Funding
    Correlated light and ultrastructural imaging of learning-related synaptic plasticity
    NIH R21NS112750Jun 1, 2020 - Nov 30, 2021
    Role: Principal Investigator
    Inter-area communications in a decision-making circuit
    NIH R03MH120426May 1, 2020 - Apr 30, 2022
    Role: Principal Investigator
    Context-dependent plasticity of adult-born neurons
    NIH R01DC018545Mar 1, 2020 - Feb 28, 2025
    Role: Principal Investigator
    CRISPR-based mosaic analysis of neuromodulatory control of learning-related plasticity
    NIH R21NS109722Apr 1, 2019 - Mar 31, 2021
    Role: Principal Investigator
    Network basis of action selection
    NIH U01NS094342Sep 30, 2015 - Aug 31, 2018
    Role: Principal Investigator
    Experience-driven plasticity of visual circuits
    NIH R01EY025349Aug 1, 2015 - Jul 31, 2021
    Role: Principal Investigator
    Experience-driven plasticity of olfactory bulb odor representations
    NIH R01DC014690Jul 1, 2015 - Jun 30, 2021
    Role: Principal Investigator
    Cortical Control of Motor Learning
    NIH R01NS091010Feb 1, 2015 - Jan 31, 2025
    Role: Principal Investigator
    Chronic imaging of odor-evoked activity in olfactory bulb circuits of awake mice
    NIH R21DC012641Jul 1, 2012 - Jun 30, 2015
    Role: Principal Investigator

    Collapse Bibliographic 
    Collapse Publications
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. AlphaTracker: a multi-animal tracking and behavioral analysis tool. Front Behav Neurosci. 2023; 17:1111908. Chen Z, Zhang R, Fang HS, Zhang YE, Bal A, Zhou H, Rock RR, Padilla-Coreano N, Keyes LR, Zhu H, Li YL, Komiyama T, Tye KM, Lu C. PMID: 37324523; PMCID: PMC10266280.
      View in: PubMed   Mentions: 2  
    2. Deep learning for neural decoding in motor cortex. J Neural Eng. 2022 09 23; 19(5). Liu F, Meamardoost S, Gunawan R, Komiyama T, Mewes C, Zhang Y, Hwang E, Wang L. PMID: 36148535.
      View in: PubMed   Mentions:    Fields:    
    3. Learning binds new inputs into functional synaptic clusters via spinogenesis. Nat Neurosci. 2022 06; 25(6):726-737. Hedrick NG, Lu Z, Bushong E, Singhi S, Nguyen P, Magaña Y, Jilani S, Lim BK, Ellisman M, Komiyama T. PMID: 35654957.
      View in: PubMed   Mentions: 7     Fields:    Translation:AnimalsCells
    4. Global and subtype-specific modulation of cortical inhibitory neurons regulated by acetylcholine during motor learning. Neuron. 2022 07 20; 110(14):2334-2350.e8. Ren C, Peng K, Yang R, Liu W, Liu C, Komiyama T. PMID: 35584693; PMCID: PMC9308684.
      View in: PubMed   Mentions: 7     Fields:    Translation:AnimalsCells
    5. PatchWarp: Corrections of non-uniform image distortions in two-photon calcium imaging data by patchwork affine transformations. Cell Rep Methods. 2022 05 23; 2(5):100205. Hattori R, Komiyama T. PMID: 35637910; PMCID: PMC9142688.
      View in: PubMed   Mentions: 5  
    6. Longitudinal two-photon calcium imaging with ultra-large cranial window for head-fixed mice. STAR Protoc. 2022 06 17; 3(2):101343. Hattori R, Komiyama T. PMID: 35496806; PMCID: PMC9048142.
      View in: PubMed   Mentions: 2     Fields:    Translation:AnimalsCells
    7. FARCI: Fast and Robust Connectome Inference. Brain Sci. 2021 Nov 24; 11(12). Meamardoost S, Bhattacharya M, Hwang EJ, Komiyama T, Mewes C, Wang L, Zhang Y, Gunawan R. PMID: 34942857; PMCID: PMC8699247.
      View in: PubMed   Mentions:
    8. Context-dependent persistency as a coding mechanism for robust and widely distributed value coding. Neuron. 2022 02 02; 110(3):502-515.e11. Hattori R, Komiyama T. PMID: 34818514; PMCID: PMC8813889.
      View in: PubMed   Mentions: 9     Fields:    Translation:AnimalsCells
    9. Wide-field calcium imaging of cortex-wide activity in awake, head-fixed mice. STAR Protoc. 2021 12 17; 2(4):100973. Ren C, Komiyama T. PMID: 34849490; PMCID: PMC8608657.
      View in: PubMed   Mentions: 5     Fields:    Translation:Animals
    10. Decoding of cortex-wide brain activity from local recordings of neural potentials. J Neural Eng. 2021 11 15; 18(6). Liu X, Ren C, Huang Z, Wilson M, Kim JH, Lu Y, Ramezani M, Komiyama T, Kuzum D. PMID: 34706356; PMCID: PMC8643174.
      View in: PubMed   Mentions: 1     Fields:    Translation:Animals
    11. Disengagement of Motor Cortex during Long-Term Learning Tracks the Performance Level of Learned Movements. J Neurosci. 2021 08 18; 41(33):7029-7047. Hwang EJ, Dahlen JE, Mukundan M, Komiyama T. PMID: 34244359; PMCID: PMC8372014.
      View in: PubMed   Mentions: 4     Fields:    Translation:AnimalsCells
    12. Characterizing Cortex-Wide Dynamics with Wide-Field Calcium Imaging. J Neurosci. 2021 05 12; 41(19):4160-4168. Ren C, Komiyama T. PMID: 33893217; PMCID: PMC8143209.
      View in: PubMed   Mentions: 23     Fields:    Translation:HumansAnimals
    13. Multimodal neural recordings with Neuro-FITM uncover diverse patterns of cortical-hippocampal interactions. Nat Neurosci. 2021 06; 24(6):886-896. Liu X, Ren C, Lu Y, Liu Y, Kim JH, Leutgeb S, Komiyama T, Kuzum D. PMID: 33875893; PMCID: PMC8627685.
      View in: PubMed   Mentions: 20     Fields:    Translation:Animals
    14. Autonomous Computing Materials. ACS Nano. 2021 03 23; 15(3):3586-3592. Bathe M, Hernandez R, Komiyama T, Machiraju R, Neogi S. PMID: 33636971.
      View in: PubMed   Mentions: 2     Fields:    
    15. Context-dependent plasticity of adult-born neurons regulated by cortical feedback. Sci Adv. 2020 10; 6(42). Wu A, Yu B, Chen Q, Matthews GA, Lu C, Campbell E, Tye KM, Komiyama T. PMID: 33067236; PMCID: PMC7567600.
      View in: PubMed   Mentions: 4     Fields:    Translation:Cells
    16. Stability of motor cortex network states during learning-associated neural reorganizations. J Neurophysiol. 2020 11 01; 124(5):1327-1342. Ma Z, Liu H, Komiyama T, Wessel R. PMID: 32937084; PMCID: PMC8356787.
      View in: PubMed   Mentions: 6     Fields:    Translation:AnimalsCells
    17. Evaluation of Durability of Transparent Graphene Electrodes Fabricated on Different Flexible Substrates for Chronic In Vivo Experiments. IEEE Trans Biomed Eng. 2020 11; 67(11):3203-3210. Ding D, Lu Y, Zhao R, Liu X, De-Eknamkul C, Ren C, Mehrsa A, Komiyama T, Kuzum D. PMID: 32191878; PMCID: PMC8560430.
      View in: PubMed   Mentions: 4     Fields:    Translation:Animals
    18. Plasticity in olfactory bulb circuits. Curr Opin Neurobiol. 2020 10; 64:17-23. Wu A, Yu B, Komiyama T. PMID: 32062045; PMCID: PMC7423727.
      View in: PubMed   Mentions: 10     Fields:    Translation:Animals
    19. Corticostriatal Flow of Action Selection Bias. Neuron. 2019 12 18; 104(6):1126-1140.e6. Hwang EJ, Link TD, Hu YY, Lu S, Wang EH, Lilascharoen V, Aronson S, O'Neil K, Lim BK, Komiyama T. PMID: 31706697; PMCID: PMC6923603.
      View in: PubMed   Mentions: 15     Fields:    Translation:Animals
    20. Disengagement of motor cortex from movement control during long-term learning. Sci Adv. 2019 10; 5(10):eaay0001. Hwang EJ, Dahlen JE, Hu YY, Aguilar K, Yu B, Mukundan M, Mitani A, Komiyama T. PMID: 31693007; PMCID: PMC6821459.
      View in: PubMed   Mentions: 16     Fields:    Translation:Animals
    21. Area-Specificity and Plasticity of History-Dependent Value Coding During Learning. Cell. 2019 06 13; 177(7):1858-1872.e15. Hattori R, Danskin B, Babic Z, Mlynaryk N, Komiyama T. PMID: 31080067; PMCID: PMC6663310.
      View in: PubMed   Mentions: 47     Fields:    Translation:AnimalsCells
    22. Real-Time Processing of Two-Photon Calcium Imaging Data Including Lateral Motion Artifact Correction. Front Neuroinform. 2018; 12:98. Mitani A, Komiyama T. PMID: 30618703; PMCID: PMC6305597.
      View in: PubMed   Mentions: 21  
    23. Awake Mouse Imaging: From Two-Photon Microscopy to Blood Oxygen Level-Dependent Functional Magnetic Resonance Imaging. Biol Psychiatry Cogn Neurosci Neuroimaging. 2019 06; 4(6):533-542. Desjardins M, Kiliç K, Thunemann M, Mateo C, Holland D, Ferri CGL, Cremonesi JA, Li B, Cheng Q, Weldy KL, Saisan PA, Kleinfeld D, Komiyama T, Liu TT, Bussell R, Wong EC, Scadeng M, Dunn AK, Boas DA, Sakadžic S, Mandeville JB, Buxton RB, Dale AM, Devor A. PMID: 30691968; PMCID: PMC6556427.
      View in: PubMed   Mentions: 32     Fields:    Translation:Animals
    24. Ultra-low Impedance Graphene Microelectrodes with High Optical Transparency for Simultaneous Deep 2-photon Imaging in Transgenic Mice. Adv Funct Mater. 2018 Aug 01; 28(31). Lu Y, Liu X, Hattori R, Ren C, Zhang X, Komiyama T, Kuzum D. PMID: 34084100; PMCID: PMC8172040.
      View in: PubMed   Mentions: 12  
    25. Adult-born neurons facilitate olfactory bulb pattern separation during task engagement. Elife. 2018 03 13; 7. Li WL, Chu MW, Wu A, Suzuki Y, Imayoshi I, Komiyama T. PMID: 29533179; PMCID: PMC5912906.
      View in: PubMed   Mentions: 28     Fields:    Translation:AnimalsCells
    26. Brain-Computer Interface with Inhibitory Neurons Reveals Subtype-Specific Strategies. Curr Biol. 2018 01 08; 28(1):77-83.e4. Mitani A, Dong M, Komiyama T. PMID: 29249656; PMCID: PMC5760288.
      View in: PubMed   Mentions: 11     Fields:    Translation:AnimalsCells
    27. History-based action selection bias in posterior parietal cortex. Nat Commun. 2017 11 01; 8(1):1242. Hwang EJ, Dahlen JE, Mukundan M, Komiyama T. PMID: 29089500; PMCID: PMC5663966.
      View in: PubMed   Mentions: 54     Fields:    Translation:Animals
    28. Lack of Pattern Separation in Sensory Inputs to the Olfactory Bulb during Perceptual Learning. eNeuro. 2017 Sep-Oct; 4(5). Chu MW, Li WL, Komiyama T. PMID: 28955724; PMCID: PMC5615249.
      View in: PubMed   Mentions: 8     Fields:    Translation:AnimalsCells
    29. Functions and dysfunctions of neocortical inhibitory neuron subtypes. Nat Neurosci. 2017 Aug 29; 20(9):1199-1208. Hattori R, Kuchibhotla KV, Froemke RC, Komiyama T. PMID: 28849791; PMCID: PMC7082034.
      View in: PubMed   Mentions: 54     Fields:    Translation:HumansCells
    30. Reorganization of corticospinal output during motor learning. Nat Neurosci. 2017 Aug; 20(8):1133-1141. Peters AJ, Lee J, Hedrick NG, O'Neil K, Komiyama T. PMID: 28671694; PMCID: PMC5656286.
      View in: PubMed   Mentions: 53     Fields:    Translation:AnimalsCells
    31. Neuromodulation in Chemosensory Pathways. Chem Senses. 2017 Jun 01; 42(5):375-379. McIntyre JC, Thiebaud N, McGann JP, Komiyama T, Rothermel M. PMID: 28379355; PMCID: PMC5863563.
      View in: PubMed   Mentions: 13     Fields:    Translation:AnimalsCells
    32. Transformation of Cortex-wide Emergent Properties during Motor Learning. Neuron. 2017 May 17; 94(4):880-890.e8. Makino H, Ren C, Liu H, Kim AN, Kondapaneni N, Liu X, Kuzum D, Komiyama T. PMID: 28521138; PMCID: PMC5502752.
      View in: PubMed   Mentions: 94     Fields:    Translation:Animals
    33. Learning in the Rodent Motor Cortex. Annu Rev Neurosci. 2017 07 25; 40:77-97. Peters AJ, Liu H, Komiyama T. PMID: 28375768; PMCID: PMC5714655.
      View in: PubMed   Mentions: 47     Fields:    Translation:AnimalsCells
    34. Circuit Mechanisms of Sensorimotor Learning. Neuron. 2016 Nov 23; 92(4):705-721. Makino H, Hwang EJ, Hedrick NG, Komiyama T. PMID: 27883902; PMCID: PMC5131723.
      View in: PubMed   Mentions: 73     Fields:    Translation:HumansAnimals
    35. Balancing the Robustness and Efficiency of Odor Representations during Learning. Neuron. 2016 Oct 05; 92(1):174-186. Chu MW, Li WL, Komiyama T. PMID: 27667005; PMCID: PMC5061050.
      View in: PubMed   Mentions: 43     Fields:    Translation:AnimalsCells
    36. Learning enhances the relative impact of top-down processing in the visual cortex. Nat Neurosci. 2015 Aug; 18(8):1116-22. Makino H, Komiyama T. PMID: 26167904; PMCID: PMC4523093.
      View in: PubMed   Mentions: 137     Fields:    Translation:AnimalsCells
    37. Subtype-specific plasticity of inhibitory circuits in motor cortex during motor learning. Nat Neurosci. 2015 Aug; 18(8):1109-15. Chen SX, Kim AN, Peters AJ, Komiyama T. PMID: 26098758; PMCID: PMC4519436.
      View in: PubMed   Mentions: 136     Fields:    Translation:AnimalsCells
    38. Broadcasting of cortical activity to the olfactory bulb. Cell Rep. 2015 Feb 24; 10(7):1032-9. Boyd AM, Kato HK, Komiyama T, Isaacson JS. PMID: 25704808; PMCID: PMC4342299.
      View in: PubMed   Mentions: 42     Fields:    Translation:Animals
    39. Emergence of reproducible spatiotemporal activity during motor learning. Nature. 2014 Jun 12; 510(7504):263-7. Peters AJ, Chen SX, Komiyama T. PMID: 24805237.
      View in: PubMed   Mentions: 206     Fields:    Translation:AnimalsCells
    40. Procedures for behavioral experiments in head-fixed mice. PLoS One. 2014; 9(2):e88678. Guo ZV, Hires SA, Li N, O'Connor DH, Komiyama T, Ophir E, Huber D, Bonardi C, Morandell K, Gutnisky D, Peron S, Xu NL, Cox J, Svoboda K. PMID: 24520413; PMCID: PMC3919818.
      View in: PubMed   Mentions: 177     Fields:    Translation:HumansAnimals
    41. Parvalbumin-expressing interneurons linearly control olfactory bulb output. Neuron. 2013 Dec 04; 80(5):1218-31. Kato HK, Gillet SN, Peters AJ, Isaacson JS, Komiyama T. PMID: 24239124; PMCID: PMC3884945.
      View in: PubMed   Mentions: 104     Fields:    Translation:AnimalsCells
    42. Dynamic sensory representations in the olfactory bulb: modulation by wakefulness and experience. Neuron. 2012 Dec 06; 76(5):962-75. Kato HK, Chu MW, Isaacson JS, Komiyama T. PMID: 23217744; PMCID: PMC3523713.
      View in: PubMed   Mentions: 132     Fields:    Translation:HumansAnimalsCells
    43. Secreted semaphorins from degenerating larval ORN axons direct adult projection neuron dendrite targeting. Neuron. 2011 Dec 08; 72(5):734-47. Sweeney LB, Chou YH, Wu Z, Joo W, Komiyama T, Potter CJ, Kolodkin AL, Garcia KC, Luo L. PMID: 22153371; PMCID: PMC3365565.
      View in: PubMed   Mentions: 48     Fields:    Translation:AnimalsCells
    44. Learning-related fine-scale specificity imaged in motor cortex circuits of behaving mice. Nature. 2010 Apr 22; 464(7292):1182-6. Komiyama T, Sato TR, O'Connor DH, Zhang YX, Huber D, Hooks BM, Gabitto M, Svoboda K. PMID: 20376005.
      View in: PubMed   Mentions: 238     Fields:    Translation:AnimalsCells
    45. Vibrissa-based object localization in head-fixed mice. J Neurosci. 2010 Feb 03; 30(5):1947-67. O'Connor DH, Clack NG, Huber D, Komiyama T, Myers EW, Svoboda K. PMID: 20130203; PMCID: PMC6634009.
      View in: PubMed   Mentions: 169     Fields:    Translation:Animals
    46. Lola regulates Drosophila olfactory projection neuron identity and targeting specificity. Neural Dev. 2007 Jul 16; 2:14. Spletter ML, Liu J, Liu J, Su H, Giniger E, Komiyama T, Quake S, Luo L. PMID: 17634136; PMCID: PMC1947980.
      View in: PubMed   Mentions: 35     Fields:    Translation:AnimalsCells
    47. Intrinsic control of precise dendritic targeting by an ensemble of transcription factors. Curr Biol. 2007 Feb 06; 17(3):278-85. Komiyama T, Luo L. PMID: 17276922.
      View in: PubMed   Mentions: 48     Fields:    Translation:AnimalsCells
    48. Graded expression of semaphorin-1a cell-autonomously directs dendritic targeting of olfactory projection neurons. Cell. 2007 Jan 26; 128(2):399-410. Komiyama T, Sweeney LB, Schuldiner O, Garcia KC, Luo L. PMID: 17254975.
      View in: PubMed   Mentions: 98     Fields:    Translation:AnimalsCells
    49. Temporal target restriction of olfactory receptor neurons by Semaphorin-1a/PlexinA-mediated axon-axon interactions. Neuron. 2007 Jan 18; 53(2):185-200. Sweeney LB, Couto A, Chou YH, Berdnik D, Dickson BJ, Luo L, Komiyama T. PMID: 17224402.
      View in: PubMed   Mentions: 84     Fields:    Translation:AnimalsCells
    50. Development of wiring specificity in the olfactory system. Curr Opin Neurobiol. 2006 Feb; 16(1):67-73. Komiyama T, Luo L. PMID: 16377177.
      View in: PubMed   Mentions: 55     Fields:    Translation:AnimalsCells
    51. Development of wiring specificity of the Drosophila olfactory system. Chem Senses. 2005 Jan; 30 Suppl 1:i94. Jefferis GS, Marin EC, Komiyama T, Zhu H, Chihara T, Berdnik D, Luo L. PMID: 15738213.
      View in: PubMed   Mentions: 3     Fields:    Translation:AnimalsCells
    52. Olfactory receptor neuron axon targeting: intrinsic transcriptional control and hierarchical interactions. Nat Neurosci. 2004 Aug; 7(8):819-25. Komiyama T, Carlson JR, Luo L. PMID: 15247920.
      View in: PubMed   Mentions: 50     Fields:    Translation:AnimalsCells
    53. Neuroscience. Calcium and CREST for healthy dendrites. Science. 2004 Jan 09; 303(5655):179-81. Jefferis GS, Komiyama T, Luo L. PMID: 14715999.
      View in: PubMed   Mentions: 1     Fields:    Translation:AnimalsCells
    54. From lineage to wiring specificity. POU domain transcription factors control precise connections of Drosophila olfactory projection neurons. Cell. 2003 Jan 24; 112(2):157-67. Komiyama T, Johnson WA, Luo L, Jefferis GS. PMID: 12553905.
      View in: PubMed   Mentions: 66     Fields:    Translation:AnimalsCells
    55. BET, a novel neuronal transmembrane protein with multiple EGF-like motifs. Neuroreport. 2002 May 07; 13(6):909-15. Nishizumi H, Komiyama T, Miyabayashi T, Sakano S, Sakano H. PMID: 11997712.
      View in: PubMed   Mentions: 8     Fields:    Translation:HumansAnimalsCells
    56. Representation of the glomerular olfactory map in the Drosophila brain. Cell. 2002 Apr 19; 109(2):243-55. Marin EC, Jefferis GS, Komiyama T, Zhu H, Luo L. PMID: 12007410.
      View in: PubMed   Mentions: 190     Fields:    Translation:AnimalsCells
    57. Predicting the reactivity of proteins from their sequence alone: Kazal family of protein inhibitors of serine proteinases. Proc Natl Acad Sci U S A. 2001 Feb 13; 98(4):1410-5. Lu SM, Lu W, Qasim MA, Anderson S, Apostol I, Ardelt W, Bigler T, Chiang YW, Cook J, James MN, Kato I, Kelly C, Kohr W, Komiyama T, Lin TY, Ogawa M, Otlewski J, Park SJ, Qasim S, Ranjbar M, Tashiro M, Warne N, Whatley H, Wieczorek A, Wieczorek M, Wilusz T, Wynn R, Zhang W, Laskowski M. PMID: 11171964; PMCID: PMC29270.
      View in: PubMed   Mentions: 29     Fields:    Translation:HumansAnimalsCells
    58. Cutaneous reflexes during human gait: electromyographic and kinematic responses to electrical stimulation. J Neurophysiol. 1997 Jun; 77(6):3311-25. Zehr EP, Komiyama T, Stein RB. PMID: 9212277.
      View in: PubMed   Mentions: 83     Fields:    Translation:HumansCells
    59. A novel yeast gene, RHK1, is involved in the synthesis of the cell wall receptor for the HM-1 killer toxin that inhibits beta-1,3-glucan synthesis. Mol Gen Genet. 1997 Mar 26; 254(2):139-47. Kimura T, Kitamoto N, Kito Y, Iimura Y, Shirai T, Komiyama T, Furuichi Y, Sakka K, Ohmiya K. PMID: 9108275.
      View in: PubMed   Mentions: 3     Fields:    Translation:HumansAnimalsCells
    60. The differences in human spinal motoneuron excitability during the foreperiod of a motor task. Exp Brain Res. 1990; 79(2):357-64. Komiyama T, Tanaka R. PMID: 2323381.
      View in: PubMed   Mentions: 6     Fields:    Translation:HumansCells
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