Shankar Subramaniam

Title(s)Professor, Bioengineering
SchoolVc-academic Affairs
Address9500 Gilman Drive #
La Jolla CA 92093
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    Collapse Research 
    Collapse Research Activities and Funding
    Graduate Training Program in Bioinformatics
    NIH T32GM139790Jul 1, 2021 - Jun 30, 2026
    Role: Principal Investigator
    Biomedical Data Commons Workbench (BDCW)
    NIH OT2OD030544Sep 23, 2020 - Sep 22, 2023
    Role: Principal Investigator
    National Metabolomics Data Repository - nextgen Metabolomics Workbench
    NIH U2CDK119886Aug 17, 2018 - Jun 30, 2022
    Role: Principal Investigator
    Reconstruction and Modeling of Dynamical Molecular Networks
    NIH R01LM012595Aug 6, 2018 - Jun 30, 2022
    Role: Principal Investigator
    Mapping Disease Pathways for Biliary Atresia
    NIH R01DK109365Apr 1, 2017 - Mar 31, 2021
    Role: Co-Principal Investigator
    The second phase of NIH Common Fund 4D Nucleome Network Organizational Hub
    NIH U01CA200147Sep 1, 2015 - Aug 31, 2025
    Role: Principal Investigator
    The Metabolomics Data Center and Workbench (MDCW)
    NIH U01DK097430Sep 6, 2012 - Aug 31, 2019
    Role: Principal Investigator
    Systems Biology Analyses for Hemodynamic Regulation of Vascular Homeostasis
    NIH R01HL108735Aug 24, 2012 - Jul 31, 2025
    Role: Principal Investigator
    Nucleolin Regulation of miRome by Shear Stress
    NIH R01HL106579Jan 1, 2011 - Nov 30, 2022
    Role: Principal Investigator
    System Biological Analyses of Innate and Adaptive Responses to Vaccination
    NIH U19AI090023Jul 12, 2010 - Jun 30, 2022
    Role: Co-Investigator
    Reconstruction and Modeling of Networks Involved in Cardiomyoctye Differentiation
    NIH R33HL087375Aug 1, 2007 - Jul 31, 2011
    Role: Principal Investigator
    Signaling Gateway
    NIH R01GM078005Sep 30, 2006 - Aug 31, 2014
    Role: Principal Investigator
    Center of Nanotechnology for Treatment, Understanding, *
    NIH U54CA119335Sep 30, 2005 - Dec 31, 2011
    Role: Co-Investigator
    LIPID MAPS
    NIH U54GM069338Aug 12, 2003 - Jul 31, 2014
    Role: Co-Investigator
    Graduate Training Program in Bioinformatics
    NIH T32GM008806Jul 1, 2001 - Jun 30, 2021
    Role: Principal Investigator
    JOINT CENTER FOR STRUCTURAL GENOMICS
    NIH P50GM062411Sep 30, 2000 - Aug 31, 2006
    Role: Co-Investigator

    Collapse Bibliographic 
    Collapse Publications
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Grand Challenges at the Interface of Engineering and Medicine. IEEE Open J Eng Med Biol. 2024; 5:1-13. Subramaniam S, Akay M, Anastasio MA, Bailey V, Boas D, Bonato P, Chilkoti A, Cochran JR, Colvin V, Desai TA, Duncan JS, Epstein FH, Fraley S, Giachelli C, Grande-Allen KJ, Green J, Guo XE, Hilton IB, Humphrey JD, Johnson CR, Karniadakis G, King MR, Kirsch RF, Kumar S, Laurencin CT, Li S, Lieber RL, Lovell N, Mali P, Margulies SS, Meaney DF, Ogle B, Palsson B, A Peppas N, Perreault EJ, Rabbitt R, Setton LA, Shea LD, Shroff SG, Shung K, Tolias AS, van der Meulen MCH, Varghese S, Vunjak-Novakovic G, White JA, Winslow R, Zhang J, Zhang K, Zukoski C, Miller MI. PMID: 38415197; PMCID: PMC10896418.
      View in: PubMed   Mentions:
    2. Single-cell RNA sequencing unveils unique transcriptomic signatures of endothelial cells and role of ENO1 in response to disturbed flow. Proc Natl Acad Sci U S A. 2024 Jan 30; 121(5):e2318904121. Chen LJ, Li JY, Nguyen P, He M, Chen ZB, Subramaniam S, Shyy JY, Chien S. PMID: 38261622; PMCID: PMC10835041.
      View in: PubMed   Mentions: 2     Fields:    Translation:AnimalsCells
    3. Limitations of the human iPSC-derived neuron model for early-onset Alzheimer's disease. Mol Brain. 2023 Nov 03; 16(1):75. Valdes P, Henry KW, Fitzgerald MQ, Muralidharan K, Caldwell AB, Ramachandran S, Goldstein LSB, Mobley WC, Galasko DR, Subramaniam S. PMID: 37924159; PMCID: PMC10623777.
      View in: PubMed   Mentions:    Fields:    Translation:HumansCells
    4. Endotype Characterization Reveals Mechanistic Differences Across Brain Regions in Sporadic Alzheimer's Disease. J Alzheimers Dis Rep. 2023; 7(1):957-972. Patel AO, Caldwell AB, Ramachandran S, Subramaniam S. PMID: 37849634; PMCID: PMC10578327.
      View in: PubMed   Mentions:
    5. The Janus face of proliferating plasmablasts in dengue and COVID-19 infections. Front Immunol. 2023; 14:1068424. Nayak P, Mukund K, Subramaniam S. PMID: 37638019; PMCID: PMC10450630.
      View in: PubMed   Mentions:    Fields:    Translation:HumansCells
    6. Methadone alters transcriptional programs associated with synapse formation in human cortical organoids. Transl Psychiatry. 2023 05 06; 13(1):151. Dwivedi I, Caldwell AB, Zhou D, Wu W, Subramaniam S, Haddad GG. PMID: 37147277; PMCID: PMC10163238.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    7. Temporal transcriptional control of neural induction in human induced pluripotent stem cells. Front Mol Neurosci. 2023; 16:1139287. Gupta S, Polit LD, Fitzgerald M, Rowland HA, Murali D, Buckley NJ, Subramaniam S. PMID: 37213689; PMCID: PMC10195998.
      View in: PubMed   Mentions:
    8. MetGENE: gene-centric metabolomics information retrieval tool. Gigascience. 2022 Dec 28; 12. Srinivasan S, Maurya MR, Ramachandran S, Fahy E, Subramaniam S. PMID: 37983749; PMCID: PMC10659118.
      View in: PubMed   Mentions: 1     Fields:    
    9. Transcriptomic profiling of sporadic Alzheimer's disease patients. Mol Brain. 2022 10 12; 15(1):83. Caldwell AB, Anantharaman BG, Ramachandran S, Nguyen P, Liu Q, Trinh I, Galasko DR, Desplats PA, Wagner SL, Subramaniam S. PMID: 36224601; PMCID: PMC9559068.
      View in: PubMed   Mentions: 5     Fields:    Translation:HumansCells
    10. ARID1B, a molecular suppressor of erythropoiesis, is essential for the prevention of Monge's disease. Exp Mol Med. 2022 06; 54(6):777-787. Azad P, Caldwell AB, Ramachandran S, Spann NJ, Akbari A, Villafuerte FC, Bermudez D, Zhao H, Poulsen O, Zhou D, Bafna V, Subramaniam S, Haddad GG. PMID: 35672450; PMCID: PMC9256584.
      View in: PubMed   Mentions: 4     Fields:    Translation:HumansCells
    11. Modular and mechanistic changes across stages of colorectal cancer. BMC Cancer. 2022 Apr 21; 22(1):436. Rahiminejad S, Maurya MR, Mukund K, Subramaniam S. PMID: 35448980; PMCID: PMC9022252.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansCells
    12. GNPS Dashboard: collaborative exploration of mass spectrometry data in the web browser. Nat Methods. 2022 02; 19(2):134-136. Petras D, Phelan VV, Acharya D, Allen AE, Aron AT, Bandeira N, Bowen BP, Belle-Oudry D, Boecker S, Cummings DA, Deutsch JM, Fahy E, Garg N, Gregor R, Handelsman J, Navarro-Hoyos M, Jarmusch AK, Jarmusch SA, Louie K, Maloney KN, Marty MT, Meijler MM, Mizrahi I, Neve RL, Northen TR, Molina-Santiago C, Panitchpakdi M, Pullman B, Puri AW, Schmid R, Subramaniam S, Thukral M, Vasquez-Castro F, Dorrestein PC, Wang M. PMID: 34862502; PMCID: PMC8831450.
      View in: PubMed   Mentions: 18     Fields:    
    13. Endotype reversal as a novel strategy for screening drugs targeting familial Alzheimer's disease. Alzheimers Dement. 2022 Nov; 18(11):2117-2130. Caldwell AB, Liu Q, Zhang C, Schroth GP, Galasko DR, Rynearson KD, Tanzi RE, Yuan SH, Wagner SL, Subramaniam S. PMID: 35084109.
      View in: PubMed   Mentions: 3     Fields:    Translation:HumansCells
    14. Immune Response in Severe and Non-Severe Coronavirus Disease 2019 (COVID-19) Infection: A Mechanistic Landscape. Front Immunol. 2021; 12:738073. Mukund K, Nayak P, Ashokkumar C, Rao S, Almeda J, Betancourt-Garcia MM, Sindhi R, Subramaniam S. PMID: 34721400; PMCID: PMC8548832.
      View in: PubMed   Mentions: 15     Fields:    Translation:HumansCells
    15. Heme Oxygenase-1 at the Nexus of Endothelial Cell Fate Decision Under Oxidative Stress. Front Cell Dev Biol. 2021; 9:702974. Raghunandan S, Ramachandran S, Ke E, Miao Y, Lal R, Chen ZB, Subramaniam S. PMID: 34595164; PMCID: PMC8476872.
      View in: PubMed   Mentions: 2  
    16. Temporal mechanisms of myogenic specification in human induced pluripotent stem cells. Sci Adv. 2021 03; 7(12). Nayak P, Colas A, Mercola M, Varghese S, Subramaniam S. PMID: 33731358; PMCID: PMC7968833.
      View in: PubMed   Mentions: 2     Fields:    Translation:HumansCells
    17. Longitudinal shear stress response in human endothelial cells to atheroprone and atheroprotective conditions. Proc Natl Acad Sci U S A. 2021 01 26; 118(4). Maurya MR, Gupta S, Li JY, Ajami NE, Chen ZB, Shyy JY, Chien S, Subramaniam S. PMID: 33468662; PMCID: PMC7848718.
      View in: PubMed   Mentions: 26     Fields:    Translation:HumansCells
    18. RefMet: a reference nomenclature for metabolomics. Nat Methods. 2020 12; 17(12):1173-1174. Fahy E, Subramaniam S. PMID: 33199890.
      View in: PubMed   Mentions: 29     Fields:    Translation:Humans
    19. Dedifferentiation and neuronal repression define familial Alzheimer's disease. Sci Adv. 2020 11; 6(46). Caldwell AB, Liu Q, Schroth GP, Galasko DR, Yuan SH, Wagner SL, Subramaniam S. PMID: 33188013; PMCID: PMC7673760.
      View in: PubMed   Mentions: 23     Fields:    Translation:HumansCells
    20. Systems Analysis of Biliary Atresia Through Integration of High-Throughput Biological Data. Front Physiol. 2020; 11:966. Min J, Ningappa M, So J, Shin D, Sindhi R, Subramaniam S. PMID: 32848883; PMCID: PMC7426509.
      View in: PubMed   Mentions: 2  
    21. Plasmin Cascade Mediates Thrombotic Events in SARS-CoV-2 Infection via Complement and Platelet-Activating Systems. IEEE Open J Eng Med Biol. 2020; 1:220-227. Mukund K, Mathee K, Subramaniam S. PMID: 34786557; PMCID: PMC8527892.
      View in: PubMed   Mentions: 6  
    22. Right and left-sided colon cancers - specificity of molecular mechanisms in tumorigenesis and progression. BMC Cancer. 2020 Apr 15; 20(1):317. Mukund K, Syulyukina N, Ramamoorthy S, Subramaniam S. PMID: 32293332; PMCID: PMC7161305.
      View in: PubMed   Mentions: 33     Fields:    Translation:HumansCells
    23. Attractor Ranked Radial Basis Function Network: A Nonparametric Forecasting Approach for Chaotic Dynamic Systems. Sci Rep. 2020 03 02; 10(1):3780. Masnadi-Shirazi M, Subramaniam S. PMID: 32123218; PMCID: PMC7052196.
      View in: PubMed   Mentions:    Fields:    
    24. Histone Signatures Predict Therapeutic Efficacy in Breast Cancer. IEEE Open J Eng Med Biol. 2020; 1:74-82. Mollah SA, Subramaniam S. PMID: 32412527; PMCID: PMC7207876.
      View in: PubMed   Mentions: 1  
    25. Skeletal muscle: A review of molecular structure and function, in health and disease. Wiley Interdiscip Rev Syst Biol Med. 2020 01; 12(1):e1462. Mukund K, Subramaniam S. PMID: 31407867; PMCID: PMC6916202.
      View in: PubMed   Mentions: 129     Fields:    Translation:HumansAnimalsCells
    26. Time varying causal network reconstruction of a mouse cell cycle. BMC Bioinformatics. 2019 May 29; 20(1):294. Masnadi-Shirazi M, Maurya MR, Pao G, Ke E, Verma IM, Subramaniam S. PMID: 31142274; PMCID: PMC6542064.
      View in: PubMed   Mentions: 1     Fields:    Translation:AnimalsCells
    27. Topological and functional comparison of community detection algorithms in biological networks. BMC Bioinformatics. 2019 Apr 27; 20(1):212. Rahiminejad S, Maurya MR, Subramaniam S. PMID: 31029085; PMCID: PMC6487005.
      View in: PubMed   Mentions: 16     Fields:    Translation:HumansAnimals
    28. Co-expression Network Approach Reveals Functional Similarities among Diseases Affecting Human Skeletal Muscle. Front Physiol. 2017; 8:980. Mukund K, Subramaniam S. PMID: 29249983; PMCID: PMC5717538.
      View in: PubMed   Mentions: 6  
    29. Systems biology analysis of longitudinal functional response of endothelial cells to shear stress. Proc Natl Acad Sci U S A. 2017 10 10; 114(41):10990-10995. Ajami NE, Gupta S, Maurya MR, Nguyen P, Li JY, Shyy JY, Chen Z, Chien S, Subramaniam S. PMID: 28973892; PMCID: PMC5642700.
      View in: PubMed   Mentions: 61     Fields:    Translation:HumansCells
    30. Krüppel-Like Factor 4 Regulation of Cholesterol-25-Hydroxylase and Liver X Receptor Mitigates Atherosclerosis Susceptibility. Circulation. 2017 Oct 03; 136(14):1315-1330. Li Z, Martin M, Zhang J, Huang HY, Bai L, Zhang J, Kang J, He M, Li J, Maurya MR, Gupta S, Zhou G, Sangwung P, Xu YJ, Lei T, Huang HD, Jain M, Jain MK, Subramaniam S, Shyy JY. PMID: 28794002; PMCID: PMC5741092.
      View in: PubMed   Mentions: 49     Fields:    Translation:HumansAnimals
    31. LINC00341 exerts an anti-inflammatory effect on endothelial cells by repressing VCAM1. Physiol Genomics. 2017 Jul 01; 49(7):339-345. Huang TS, Wang KC, Quon S, Nguyen P, Chang TY, Chen Z, Li YS, Subramaniam S, Shyy J, Chien S. PMID: 28500253; PMCID: PMC5538877.
      View in: PubMed   Mentions: 29     Fields:    Translation:HumansCells
    32. Three distinct cell populations express extracellular matrix proteins and increase in number during skeletal muscle fibrosis. Am J Physiol Cell Physiol. 2017 Feb 01; 312(2):C131-C143. Chapman MA, Mukund K, Subramaniam S, Brenner D, Lieber RL. PMID: 27881411; PMCID: PMC5336596.
      View in: PubMed   Mentions: 27     Fields:    Translation:AnimalsCells
    33. Systems Analysis of the Complement-Induced Priming Phase of Liver Regeneration. J Immunol. 2016 09 15; 197(6):2500-8. Min JS, DeAngelis RA, Reis ES, Gupta S, Maurya MR, Evans C, Das A, Burant C, Lambris JD, Subramaniam S. PMID: 27511733; PMCID: PMC5038987.
      View in: PubMed   Mentions: 11     Fields:    Translation:AnimalsCells
    34. p62, Upregulated during Preneoplasia, Induces Hepatocellular Carcinogenesis by Maintaining Survival of Stressed HCC-Initiating Cells. Cancer Cell. 2016 06 13; 29(6):935-948. Umemura A, He F, Taniguchi K, Nakagawa H, Yamachika S, Font-Burgada J, Zhong Z, Subramaniam S, Raghunandan S, Duran A, Linares JF, Reina-Campos M, Umemura S, Valasek MA, Seki E, Yamaguchi K, Koike K, Itoh Y, Diaz-Meco MT, Moscat J, Karin M. PMID: 27211490; PMCID: PMC4907799.
      View in: PubMed   Mentions: 215     Fields:    Translation:HumansAnimalsCells
    35. Computational Modeling of Competitive Metabolism between ω3- and ω6-Polyunsaturated Fatty Acids in Inflammatory Macrophages. J Phys Chem B. 2016 08 25; 120(33):8346-53. Gupta S, Kihara Y, Maurya MR, Norris PC, Dennis EA, Subramaniam S. PMID: 27063350; PMCID: PMC5024554.
      View in: PubMed   Mentions: 5     Fields:    Translation:AnimalsCells
    36. Metabolomics Workbench: An international repository for metabolomics data and metadata, metabolite standards, protocols, tutorials and training, and analysis tools. Nucleic Acids Res. 2016 Jan 04; 44(D1):D463-70. Sud M, Fahy E, Cotter D, Azam K, Vadivelu I, Burant C, Edison A, Fiehn O, Higashi R, Nair KS, Sumner S, Subramaniam S. PMID: 26467476; PMCID: PMC4702780.
      View in: PubMed   Mentions: 302     Fields:    Translation:HumansAnimalsCells
    37. Serum microRNAs explain discordance of non-alcoholic fatty liver disease in monozygotic and dizygotic twins: a prospective study. Gut. 2016 09; 65(9):1546-54. Zarrinpar A, Gupta S, Maurya MR, Subramaniam S, Loomba R. PMID: 26002934; PMCID: PMC5089367.
      View in: PubMed   Mentions: 48     Fields:    Translation:Humans
    38. Dysregulated mechanisms underlying Duchenne muscular dystrophy from co-expression network preservation analysis. BMC Res Notes. 2015 May 03; 8:182. Mukund K, Subramaniam S. PMID: 25935398; PMCID: PMC4424514.
      View in: PubMed   Mentions: 9     Fields:    Translation:Humans
    39. Systems vaccinology: Enabling rational vaccine design with systems biological approaches. Vaccine. 2015 Sep 29; 33(40):5294-301. Hagan T, Nakaya HI, Subramaniam S, Pulendran B. PMID: 25858860; PMCID: PMC4581890.
      View in: PubMed   Mentions: 55     Fields:    Translation:HumansAnimalsCellsPHPublic Health
    40. Replacing the Transfusion of 1-2 Units of Blood with Plasma Expanders that Increase Oxygen Delivery Capacity: Evidence from Experimental Studies. J Funct Biomater. 2014 Oct 27; 5(4):232-45. Tsai AG, Salazar Vázquez BY, Cabrales P, Kistler EB, Tartakovsky DM, Subramaniam S, Acharya SA, Intaglietta M. PMID: 25350267; PMCID: PMC4285404.
      View in: PubMed   Mentions: 2  
    41. Wnt pathway activation increases hypoxia tolerance during development. PLoS One. 2014; 9(8):e103292. Gersten M, Zhou D, Azad P, Haddad GG, Subramaniam S. PMID: 25093834; PMCID: PMC4122365.
      View in: PubMed   Mentions: 5     Fields:    Translation:AnimalsCells
    42. MicroRNA-23b regulates cyclin-dependent kinase-activating kinase complex through cyclin H repression to modulate endothelial transcription and growth under flow. Arterioscler Thromb Vasc Biol. 2014 Jul; 34(7):1437-45. Wang KC, Nguyen P, Weiss A, Yeh YT, Chien HS, Lee A, Teng D, Subramaniam S, Li YS, Chien S. PMID: 24855060; PMCID: PMC4119726.
      View in: PubMed   Mentions: 16     Fields:    Translation:HumansAnimalsCells
    43. Influence of serological factors and BMI on the blood pressure/hematocrit association in healthy young men and women. Vasc Health Risk Manag. 2014; 10:271-7. Salazar Vázquez BY, Salazar Vázquez MA, Chávez-Negrete A, Escobedo G, Cabrales P, Subramaniam S, Intaglietta M, Pérez-Tamayo R. PMID: 24851053; PMCID: PMC4018417.
      View in: PubMed   Mentions: 1     Fields:    Translation:Humans
    44. Drug discovery and the maze of biological complexity: an editorial essay. Wiley Interdiscip Rev Syst Biol Med. 2014 May-Jun; 6(3):225-6. Subramaniam S. PMID: 24648390.
      View in: PubMed   Mentions:    Fields:    Translation:HumansAnimals
    45. Systems analysis of transcriptional data provides insights into muscle's biological response to botulinum toxin. Muscle Nerve. 2014 Nov; 50(5):744-58. Mukund K, Mathewson M, Minamoto V, Ward SR, Subramaniam S, Lieber RL. PMID: 24536034; PMCID: PMC4136975.
      View in: PubMed   Mentions: 22     Fields:    Translation:AnimalsCells
    46. Modeling of eicosanoid fluxes reveals functional coupling between cyclooxygenases and terminal synthases. Biophys J. 2014 Feb 18; 106(4):966-75. Kihara Y, Gupta S, Maurya MR, Armando A, Shah I, Quehenberger O, Glass CK, Dennis EA, Subramaniam S. PMID: 24559999; PMCID: PMC3945033.
      View in: PubMed   Mentions: 17     Fields:    Translation:AnimalsCells
    47. Technical variations in low-input RNA-seq methodologies. Sci Rep. 2014 Jan 14; 4:3678. Bhargava V, Head SR, Ordoukhanian P, Mercola M, Subramaniam S. PMID: 24419370; PMCID: PMC3890974.
      View in: PubMed   Mentions: 41     Fields:    Translation:AnimalsCells
    48. Developing microRNA screening as a functional genomics tool for disease research. Front Physiol. 2013; 4:223. Lemons D, Maurya MR, Subramaniam S, Mercola M. PMID: 23986717; PMCID: PMC3753477.
      View in: PubMed   Mentions: 8  
    49. A combined omics study on activated macrophages--enhanced role of STATs in apoptosis, immunity and lipid metabolism. Bioinformatics. 2013 Nov 01; 29(21):2735-43. Dinasarapu AR, Gupta S, Ram Maurya M, Fahy E, Min J, Sud M, Gersten MJ, Glass CK, Subramaniam S. PMID: 23981351; PMCID: PMC3799469.
      View in: PubMed   Mentions: 12     Fields:    Translation:AnimalsCells
    50. Community Structure Analysis of Gene Interaction Networks in Duchenne Muscular Dystrophy. PLoS One. 2013; 8(6):e67237. Narayanan T, Subramaniam S. PMID: 23840633; PMCID: PMC3686745.
      View in: PubMed   Mentions: 4     Fields:    Translation:HumansCells
    51. Analysis of inflammatory and lipid metabolic networks across RAW264.7 and thioglycolate-elicited macrophages. J Lipid Res. 2013 Sep; 54(9):2525-42. Maurya MR, Gupta S, Li X, Fahy E, Dinasarapu AR, Sud M, Brown HA, Glass CK, Murphy RC, Russell DW, Dennis EA, Subramaniam S. PMID: 23776196; PMCID: PMC3735949.
      View in: PubMed   Mentions: 25     Fields:    Translation:AnimalsCells
    52. Quantitative transcriptomics using designed primer-based amplification. Sci Rep. 2013; 3:1740. Bhargava V, Ko P, Willems E, Mercola M, Subramaniam S. PMID: 23624976; PMCID: PMC3638165.
      View in: PubMed   Mentions: 21     Fields:    Translation:AnimalsCells
    53. Stochastic operator-splitting method for reaction-diffusion systems. J Chem Phys. 2012 Nov 14; 137(18):184102. Choi T, Maurya MR, Tartakovsky DM, Subramaniam S. PMID: 23163359; PMCID: PMC3505198.
      View in: PubMed   Mentions: 4     Fields:    Translation:Cells
    54. Functional classification of skeletal muscle networks. II. Applications to pathophysiology. J Appl Physiol (1985). 2012 Dec 15; 113(12):1902-20. Wang Y, Winters J, Subramaniam S. PMID: 23085957; PMCID: PMC3544493.
      View in: PubMed   Mentions: 7     Fields:    Translation:HumansAnimalsCells
    55. Functional classification of skeletal muscle networks. I. Normal physiology. J Appl Physiol (1985). 2012 Dec 15; 113(12):1884-901. Wang Y, Winters J, Subramaniam S. PMID: 23085959; PMCID: PMC3544495.
      View in: PubMed   Mentions: 7     Fields:    Translation:HumansAnimalsCells
    56. Comparison of statistical and optimisation-based methods for data-driven network reconstruction of biochemical systems. IET Syst Biol. 2012 Oct; 6(5):155-63. Asadi B, Maurya MR, Tartakovsky DM, Subramaniam S. PMID: 23101870.
      View in: PubMed   Mentions: 4     Fields:    Translation:HumansCells
    57. Regulated accumulation of desmosterol integrates macrophage lipid metabolism and inflammatory responses. Cell. 2012 Sep 28; 151(1):138-52. Spann NJ, Garmire LX, McDonald JG, Myers DS, Milne SB, Shibata N, Reichart D, Fox JN, Shaked I, Heudobler D, Raetz CR, Wang EW, Kelly SL, Sullards MC, Murphy RC, Merrill AH, Brown HA, Dennis EA, Li AC, Ley K, Tsimikas S, Fahy E, Subramaniam S, Quehenberger O, Russell DW, Glass CK. PMID: 23021221; PMCID: PMC3464914.
      View in: PubMed   Mentions: 285     Fields:    Translation:AnimalsCells
    58. Template-based combinatorial enumeration of virtual compound libraries for lipids. J Cheminform. 2012 Sep 25; 4(1):23. Sud M, Fahy E, Subramaniam S. PMID: 23006594; PMCID: PMC3545849.
      View in: PubMed   Mentions: 10  
    59. Transcriptional abnormalities of hamstring muscle contractures in children with cerebral palsy. PLoS One. 2012; 7(8):e40686. Smith LR, Chambers HG, Subramaniam S, Lieber RL. PMID: 22956992; PMCID: PMC3431909.
      View in: PubMed   Mentions: 27     Fields:    Translation:HumansCells
    60. Evolution of bioengineering at UCSD: opening new vistas. IEEE Pulse. 2012 Jul; 3(4):49-55. Subramaniam S. PMID: 22850838.
      View in: PubMed   Mentions:    Fields:    Translation:HumansAnimals
    61. PEG-albumin plasma expansion increases expression of MCP-1 evidencing increased circulatory wall shear stress: an experimental study. PLoS One. 2012; 7(6):e39111. Hightower CM, Salazar Vázquez BY, Acharya SA, Subramaniam S, Intaglietta M. PMID: 22720043; PMCID: PMC3375248.
      View in: PubMed   Mentions: 1     Fields:    Translation:Humans
    62. Evaluation of normalization methods in mammalian microRNA-Seq data. RNA. 2012 Jun; 18(6):1279-88. Garmire LX, Subramaniam S. PMID: 22532701; PMCID: PMC3358649.
      View in: PubMed   Mentions: 59     Fields:    Translation:Animals
    63. Gene-expression measurement: variance-modeling considerations for robust data analysis. Nat Immunol. 2012 Feb 16; 13(3):199-203. Subramaniam S, Hsiao G. PMID: 22344273; PMCID: PMC4358796.
      View in: PubMed   Mentions: 9     Fields:    Translation:HumansAnimals
    64. LIPID MAPS-Nature Lipidomics Gateway: An Online Resource for Students and Educators Interested in Lipids. J Chem Educ. 2012 Jan 10; 89(2):291-292. Sud M, Fahy E, Cotter D, Dennis EA, Subramaniam S. PMID: 24764601; PMCID: PMC3995124.
      View in: PubMed   Mentions: 21     Fields:    
    65. Modularity detection in protein-protein interaction networks. BMC Res Notes. 2011 Dec 29; 4:569. Narayanan T, Gersten M, Subramaniam S, Grama A. PMID: 22206604; PMCID: PMC3292542.
      View in: PubMed   Mentions: 16     Fields:    
    66. Mechanisms establishing TLR4-responsive activation states of inflammatory response genes. PLoS Genet. 2011 Dec; 7(12):e1002401. Escoubet-Lozach L, Benner C, Kaikkonen MU, Lozach J, Heinz S, Spann NJ, Crotti A, Stender J, Ghisletti S, Reichart D, Cheng CS, Luna R, Ludka C, Sasik R, Garcia-Bassets I, Hoffmann A, Subramaniam S, Hardiman G, Rosenfeld MG, Glass CK. PMID: 22174696; PMCID: PMC3234212.
      View in: PubMed   Mentions: 80     Fields:    Translation:HumansAnimalsCells
    67. A global clustering algorithm to identify long intergenic non-coding RNA--with applications in mouse macrophages. PLoS One. 2011; 6(9):e24051. Garmire LX, Garmire DG, Huang W, Yao J, Glass CK, Subramaniam S. PMID: 21980340; PMCID: PMC3184070.
      View in: PubMed   Mentions: 21     Fields:    Translation:HumansAnimalsCells
    68. Bioinformatics and systems biology of the lipidome. Chem Rev. 2011 Oct 12; 111(10):6452-90. Subramaniam S, Fahy E, Gupta S, Sud M, Byrnes RW, Cotter D, Dinasarapu AR, Maurya MR. PMID: 21939287; PMCID: PMC3383319.
      View in: PubMed   Mentions: 45     Fields:    
    69. Lipid classification, structures and tools. Biochim Biophys Acta. 2011 Nov; 1811(11):637-47. Fahy E, Cotter D, Sud M, Subramaniam S. PMID: 21704189; PMCID: PMC3995129.
      View in: PubMed   Mentions: 169     Fields:    Translation:HumansAnimals
    70. MicroRNA-21 targets peroxisome proliferators-activated receptor-alpha in an autoregulatory loop to modulate flow-induced endothelial inflammation. Proc Natl Acad Sci U S A. 2011 Jun 21; 108(25):10355-60. Zhou J, Wang KC, Wu W, Subramaniam S, Shyy JY, Chiu JJ, Li JY, Chien S. PMID: 21636785; PMCID: PMC3121870.
      View in: PubMed   Mentions: 163     Fields:    Translation:HumansCells
    71. Signaling gateway molecule pages--a data model perspective. Bioinformatics. 2011 Jun 15; 27(12):1736-8. Dinasarapu AR, Saunders B, Ozerlat I, Azam K, Subramaniam S. PMID: 21505029; PMCID: PMC3106186.
      View in: PubMed   Mentions: 7     Fields:    Translation:Cells
    72. Integration of lipidomics and transcriptomics data towards a systems biology model of sphingolipid metabolism. BMC Syst Biol. 2011 Feb 08; 5:26. Gupta S, Maurya MR, Merrill AH, Glass CK, Subramaniam S. PMID: 21303545; PMCID: PMC3047436.
      View in: PubMed   Mentions: 23     Fields:    Translation:AnimalsCells
    73. Experimental selection of hypoxia-tolerant Drosophila melanogaster. Proc Natl Acad Sci U S A. 2011 Feb 08; 108(6):2349-54. Zhou D, Udpa N, Gersten M, Visk DW, Bashir A, Xue J, Frazer KA, Posakony JW, Subramaniam S, Bafna V, Haddad GG. PMID: 21262834; PMCID: PMC3038716.
      View in: PubMed   Mentions: 68     Fields:    Translation:AnimalsCells
    74. Stochastic hybrid modeling of intracellular calcium dynamics. J Chem Phys. 2010 Oct 28; 133(16):165101. Choi T, Maurya MR, Tartakovsky DM, Subramaniam S. PMID: 21033822; PMCID: PMC2998048.
      View in: PubMed   Mentions: 7     Fields:    Translation:AnimalsCells
    75. Multi-tissue, selective PPARγ modulation of insulin sensitivity and metabolic pathways in obese rats. Am J Physiol Endocrinol Metab. 2011 Jan; 300(1):E164-74. Hsiao G, Chapman J, Ofrecio JM, Wilkes J, Resnik JL, Thapar D, Subramaniam S, Sears DD. PMID: 20959535; PMCID: PMC3023199.
      View in: PubMed   Mentions: 48     Fields:    Translation:AnimalsCells
    76. A mouse macrophage lipidome. J Biol Chem. 2010 Dec 17; 285(51):39976-85. Dennis EA, Deems RA, Harkewicz R, Quehenberger O, Brown HA, Milne SB, Myers DS, Glass CK, Hardiman G, Reichart D, Merrill AH, Sullards MC, Wang E, Murphy RC, Raetz CR, Garrett TA, Guan Z, Ryan AC, Russell DW, McDonald JG, Thompson BM, Shaw WA, Sud M, Zhao Y, Gupta S, Maurya MR, Fahy E, Subramaniam S. PMID: 20923771; PMCID: PMC3000979.
      View in: PubMed   Mentions: 142     Fields:    Translation:AnimalsCells
    77. Classification studies based on a spectral representation of DNA. J Theor Biol. 2010 Oct 21; 266(4):667-74. Bielinska-Waz D, Subramaniam S. PMID: 20691193.
      View in: PubMed   Mentions: 2     Fields:    Translation:HumansAnimals
    78. Lipidomics reveals a remarkable diversity of lipids in human plasma. J Lipid Res. 2010 Nov; 51(11):3299-305. Quehenberger O, Armando AM, Brown AH, Milne SB, Myers DS, Merrill AH, Bandyopadhyay S, Jones KN, Kelly S, Shaner RL, Sullards CM, Wang E, Murphy RC, Barkley RM, Leiker TJ, Raetz CR, Guan Z, Laird GM, Six DA, Russell DW, McDonald JG, Subramaniam S, Fahy E, Dennis EA. PMID: 20671299; PMCID: PMC2952570.
      View in: PubMed   Mentions: 501     Fields:    Translation:Humans
    79. Systems medicine--viewed through the real and computing lenses. Wiley Interdiscip Rev Syst Biol Med. 2010 Jul-Aug; 2(4):383-384. Subramaniam S, Nadeau JH. PMID: 20836036.
      View in: PubMed   Mentions: 2     Fields:    Translation:Humans
    80. Subcellular organelle lipidomics in TLR-4-activated macrophages. J Lipid Res. 2010 Sep; 51(9):2785-97. Andreyev AY, Fahy E, Guan Z, Kelly S, Li X, McDonald JG, Milne S, Myers D, Park H, Ryan A, Thompson BM, Wang E, Zhao Y, Brown HA, Merrill AH, Raetz CR, Russell DW, Subramaniam S, Dennis EA. PMID: 20574076; PMCID: PMC2918461.
      View in: PubMed   Mentions: 89     Fields:    Translation:AnimalsCells
    81. Conserved regulatory motifs at phenylethanolamine N-methyltransferase (PNMT) are disrupted by common functional genetic variation: an integrated computational/experimental approach. Mamm Genome. 2010 Apr; 21(3-4):195-204. Rodríguez-Flores JL, Zhang K, Kang SW, Wen G, Ghosh S, Friese RS, Mahata SK, Subramaniam S, Hamilton BA, O'Connor DT. PMID: 20204374; PMCID: PMC2844968.
      View in: PubMed   Mentions: 4     Fields:    Translation:HumansAnimalsCells
    82. Identification of crosstalk between phosphoprotein signaling pathways in RAW 264.7 macrophage cells. PLoS Comput Biol. 2010 Jan 29; 6(1):e1000654. Gupta S, Maurya MR, Subramaniam S. PMID: 20126526; PMCID: PMC2813256.
      View in: PubMed   Mentions: 9     Fields:    Translation:AnimalsCells
    83. Role of microRNA-23b in flow-regulation of Rb phosphorylation and endothelial cell growth. Proc Natl Acad Sci U S A. 2010 Feb 16; 107(7):3234-9. Wang KC, Garmire LX, Young A, Nguyen P, Trinh A, Subramaniam S, Wang N, Shyy JY, Li YS, Chien S. PMID: 20133741; PMCID: PMC2840325.
      View in: PubMed   Mentions: 93     Fields:    Translation:HumansCells
    84. Regulatory network of microRNAs in RAW 264.7 macrophage cells. Annu Int Conf IEEE Eng Med Biol Soc. 2010; 2010:6198-201. Garmire LX, Shen Z, Briggs S, Yeo G, Subramaniam S, Glass C. PMID: 21097158.
      View in: PubMed   Mentions: 2     Fields:    Translation:AnimalsCells
    85. Application of proteomic marker ensembles to subcellular organelle identification. Mol Cell Proteomics. 2010 Feb; 9(2):388-402. Andreyev AY, Shen Z, Guan Z, Ryan A, Fahy E, Subramaniam S, Raetz CR, Briggs S, Dennis EA. PMID: 19884172; PMCID: PMC2830848.
      View in: PubMed   Mentions: 21     Fields:    Translation:AnimalsCells
    86. Systems biology and medicine--plunging into the unknown. Wiley Interdiscip Rev Syst Biol Med. 2009 Nov-Dec; 1(3):283-284. Subramaniam S, Nadeau JH. PMID: 20835997.
      View in: PubMed   Mentions:    Fields:    Translation:HumansAnimals
    87. Mechanisms of human insulin resistance and thiazolidinedione-mediated insulin sensitization. Proc Natl Acad Sci U S A. 2009 Nov 03; 106(44):18745-50. Sears DD, Hsiao G, Hsiao A, Yu JG, Courtney CH, Ofrecio JM, Chapman J, Subramaniam S. PMID: 19841271; PMCID: PMC2763882.
      View in: PubMed   Mentions: 94     Fields:    Translation:HumansCellsCTClinical Trials
    88. An editor for pathway drawing and data visualization in the Biopathways Workbench. BMC Syst Biol. 2009 Oct 02; 3:99. Byrnes RW, Cotter D, Maer A, Li J, Nadeau D, Subramaniam S. PMID: 19799790; PMCID: PMC2763869.
      View in: PubMed   Mentions: 5     Fields:    Translation:Cells
    89. Chemoattractant signaling between tumor cells and macrophages regulates cancer cell migration, metastasis and neovascularization. PLoS One. 2009 Aug 21; 4(8):e6713. Green CE, Liu T, Montel V, Hsiao G, Lester RD, Subramaniam S, Gonias SL, Klemke RL. PMID: 19696929; PMCID: PMC2725301.
      View in: PubMed   Mentions: 70     Fields:    Translation:AnimalsCells
    90. Bivariate microarray analysis: statistical interpretation of two-channel functional genomics data. Syst Synth Biol. 2008 Dec; 2(3-4):95-104. Hsiao A, Subramaniam S. PMID: 19680790; PMCID: PMC2735646.
      View in: PubMed   Mentions: 1  
    91. Novel transcriptional profile in wrist muscles from cerebral palsy patients. BMC Med Genomics. 2009 Jul 14; 2:44. Smith LR, Pontén E, Hedström Y, Ward SR, Chambers HG, Subramaniam S, Lieber RL. PMID: 19602279; PMCID: PMC2722667.
      View in: PubMed   Mentions: 42     Fields:    
    92. An integrated model of eicosanoid metabolism and signaling based on lipidomics flux analysis. Biophys J. 2009 Jun 03; 96(11):4542-51. Gupta S, Maurya MR, Stephens DL, Dennis EA, Subramaniam S. PMID: 19486676; PMCID: PMC2711499.
      View in: PubMed   Mentions: 28     Fields:    Translation:Cells
    93. Mixed-integer nonlinear optimisation approach to coarse-graining biochemical networks. IET Syst Biol. 2009 Jan; 3(1):24-39. Maurya MR, Bornheimer SJ, Venkatasubramanian V, Subramaniam S. PMID: 19154082; PMCID: PMC2749294.
      View in: PubMed   Mentions: 7     Fields:    Translation:Cells
    94. Update of the LIPID MAPS comprehensive classification system for lipids. J Lipid Res. 2009 Apr; 50 Suppl:S9-14. Fahy E, Subramaniam S, Murphy RC, Nishijima M, Raetz CR, Shimizu T, Spener F, van Meer G, Wakelam MJ, Dennis EA. PMID: 19098281; PMCID: PMC2674711.
      View in: PubMed   Mentions: 587     Fields:    
    95. Thrombin receptor and RhoA mediate cell proliferation through integrins and cysteine-rich protein 61. FASEB J. 2008 Nov; 22(11):4011-21. Walsh CT, Radeff-Huang J, Matteo R, Hsiao A, Subramaniam S, Stupack D, Brown JH. PMID: 18687805; PMCID: PMC3980657.
      View in: PubMed   Mentions: 28     Fields:    Translation:HumansCells
    96. LIPID MAPS online tools for lipid research. Nucleic Acids Res. 2007 Jul; 35(Web Server issue):W606-12. Fahy E, Sud M, Cotter D, Subramaniam S. PMID: 17584797; PMCID: PMC1933166.
      View in: PubMed   Mentions: 350     Fields:    Translation:HumansCells
    97. Macrophage PPAR gamma is required for normal skeletal muscle and hepatic insulin sensitivity and full antidiabetic effects of thiazolidinediones. J Clin Invest. 2007 Jun; 117(6):1658-69. Hevener AL, Olefsky JM, Reichart D, Nguyen MT, Bandyopadyhay G, Leung HY, Watt MJ, Benner C, Febbraio MA, Nguyen AK, Folian B, Subramaniam S, Gonzalez FJ, Glass CK, Ricote M. PMID: 17525798; PMCID: PMC1868788.
      View in: PubMed   Mentions: 245     Fields:    Translation:AnimalsCells
    98. A kinetic model for calcium dynamics in RAW 264.7 cells: 1. Mechanisms, parameters, and subpopulational variability. Biophys J. 2007 Aug 01; 93(3):709-28. Maurya MR, Subramaniam S. PMID: 17483174; PMCID: PMC1913151.
      View in: PubMed   Mentions: 23     Fields:    Translation:AnimalsCells
    99. A kinetic model for calcium dynamics in RAW 264.7 cells: 2. Knockdown response and long-term response. Biophys J. 2007 Aug 01; 93(3):729-40. Maurya MR, Subramaniam S. PMID: 17483189; PMCID: PMC1913159.
      View in: PubMed   Mentions: 8     Fields:    Translation:AnimalsCells
    100. The lipid maps initiative in lipidomics. Methods Enzymol. 2007; 432:171-83. Schmelzer K, Fahy E, Subramaniam S, Dennis EA. PMID: 17954217.
      View in: PubMed   Mentions: 66     Fields:    
    101. Bioinformatics for lipidomics. Methods Enzymol. 2007; 432:247-73. Fahy E, Cotter D, Byrnes R, Sud M, Maer A, Li J, Nadeau D, Zhau Y, Subramaniam S. PMID: 17954221.
      View in: PubMed   Mentions: 19     Fields:    Translation:Cells
    102. Systems biology of macrophages. Adv Exp Med Biol. 2007; 598:62-79. Maurya MR, Benner C, Pradervand S, Glass C, Subramaniam S. PMID: 17892205.
      View in: PubMed   Mentions: 4     Fields:    Translation:AnimalsCells
    103. Locally defined protein phylogenetic profiles reveal previously missed protein interactions and functional relationships. Proteins. 2006 Mar 01; 62(4):1115-24. Kim Y, Subramaniam S. PMID: 16385560.
      View in: PubMed   Mentions: 24     Fields:    Translation:Cells
    104. Identification of signaling components required for the prediction of cytokine release in RAW 264.7 macrophages. Genome Biol. 2006; 7(2):R11. Pradervand S, Maurya MR, Subramaniam S. PMID: 16507166; PMCID: PMC1431720.
      View in: PubMed   Mentions: 24     Fields:    Translation:AnimalsCells
    105. LMPD: LIPID MAPS proteome database. Nucleic Acids Res. 2006 Jan 01; 34(Database issue):D507-10. Cotter D, Maer A, Guda C, Saunders B, Subramaniam S. PMID: 16381922; PMCID: PMC1347484.
      View in: PubMed   Mentions: 40     Fields:    Translation:HumansAnimals
    106. Inferring functional information from domain co-evolution. Bioinformatics. 2006 Jan 01; 22(1):40-9. Kim Y, Koyutürk M, Topkara U, Grama A, Subramaniam S. PMID: 16301205.
      View in: PubMed   Mentions: 12     Fields:    Translation:Cells
    107. Molecular determinants of crosstalk between nuclear receptors and toll-like receptors. Cell. 2005 Sep 09; 122(5):707-21. Ogawa S, Lozach J, Benner C, Pascual G, Tangirala RK, Westin S, Hoffmann A, Subramaniam S, David M, Rosenfeld MG, Glass CK. PMID: 16143103; PMCID: PMC1430687.
      View in: PubMed   Mentions: 263     Fields:    Translation:AnimalsCells
    108. VAMPIRE microarray suite: a web-based platform for the interpretation of gene expression data. Nucleic Acids Res. 2005 Jul 01; 33(Web Server issue):W627-32. Hsiao A, Ideker T, Olefsky JM, Subramaniam S. PMID: 15980550; PMCID: PMC1160204.
      View in: PubMed   Mentions: 61     Fields:    
    109. A comprehensive classification system for lipids. J Lipid Res. 2005 May; 46(5):839-61. Fahy E, Subramaniam S, Brown HA, Glass CK, Merrill AH, Murphy RC, Raetz CR, Russell DW, Seyama Y, Shaw W, Shimizu T, Spener F, van Meer G, VanNieuwenhze MS, White SH, Witztum JL, Dennis EA. PMID: 15722563.
      View in: PubMed   Mentions: 507     Fields:    Translation:Cells
    110. Reconstruction of cellular signalling networks and analysis of their properties. Nat Rev Mol Cell Biol. 2005 Feb; 6(2):99-111. Papin JA, Hunter T, Palsson BO, Subramaniam S. PMID: 15654321.
      View in: PubMed   Mentions: 166     Fields:    Translation:HumansAnimalsCells
    111. Computational modeling reveals how interplay between components of a GTPase-cycle module regulates signal transduction. Proc Natl Acad Sci U S A. 2004 Nov 09; 101(45):15899-904. Bornheimer SJ, Maurya MR, Farquhar MG, Subramaniam S. PMID: 15520372; PMCID: PMC524695.
      View in: PubMed   Mentions: 19     Fields:    Translation:Cells
    112. SledgeHMMER: a web server for batch searching the Pfam database. Nucleic Acids Res. 2004 Jul 01; 32(Web Server issue):W542-4. Chukkapalli G, Guda C, Subramaniam S. PMID: 15215445; PMCID: PMC441533.
      View in: PubMed   Mentions: 7     Fields:    Translation:Cells
    113. MITOPRED: a web server for the prediction of mitochondrial proteins. Nucleic Acids Res. 2004 Jul 01; 32(Web Server issue):W372-4. Guda C, Guda P, Fahy E, Subramaniam S. PMID: 15215413; PMCID: PMC441512.
      View in: PubMed   Mentions: 36     Fields:    Translation:HumansAnimalsCells
    114. Decoding cilia function: defining specialized genes required for compartmentalized cilia biogenesis. Cell. 2004 May 14; 117(4):527-39. Avidor-Reiss T, Maer AM, Koundakjian E, Polyanovsky A, Keil T, Subramaniam S, Zuker CS. PMID: 15137945.
      View in: PubMed   Mentions: 258     Fields:    Translation:HumansAnimalsCells
    115. MITOPRED: a genome-scale method for prediction of nucleus-encoded mitochondrial proteins. Bioinformatics. 2004 Jul 22; 20(11):1785-94. Guda C, Fahy E, Subramaniam S. PMID: 15037509.
      View in: PubMed   Mentions: 49     Fields:    Translation:HumansAnimalsCells
    116. Bioinformatics and cellular signaling. Curr Opin Biotechnol. 2004 Feb; 15(1):78-81. Papin J, Subramaniam S. PMID: 15102471.
      View in: PubMed   Mentions: 7     Fields:    Translation:Cells
    117. MitoProteome: mitochondrial protein sequence database and annotation system. Nucleic Acids Res. 2004 Jan 01; 32(Database issue):D463-7. Cotter D, Guda P, Fahy E, Subramaniam S. PMID: 14681458; PMCID: PMC308782.
      View in: PubMed   Mentions: 63     Fields:    Translation:HumansCells
    118. Bioinformatics and computational systems biology: at the cross roads of biology, engineering and computation. Conf Proc IEEE Eng Med Biol Soc. 2004; 2004:5458. Subramaniam S. PMID: 17271584.
      View in: PubMed   Mentions: 1     Fields:    
    119. The Molecule Pages database. Nature. 2002 Dec 12; 420(6916):716-7. Li J, Ning Y, Hedley W, Saunders B, Chen Y, Tindill N, Hannay T, Subramaniam S. PMID: 12478304.
      View in: PubMed   Mentions: 28     Fields:    Translation:Cells
    120. Bioinformatics of cellular signalling. Novartis Found Symp. 2002; 247:104-16; discussion 116-8, 119-28, 244-52. Subramaniam S, Bioinformatics Core Laboratory. PMID: 12539952.
      View in: PubMed   Mentions: 1     Fields:    Translation:AnimalsCells
    121. Domain architecture of a Caenorhabditis elegans AKAP suggests a novel AKAP function. FEBS Lett. 2000 Dec 08; 486(2):107-11. Herrgård S, Jambeck P, Taylor SS, Subramaniam S. PMID: 11113448.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansAnimalsCells
    122. A novel microarray strategy for detecting genes and pathways in microbes with unsequenced genomes. Microb Comp Genomics. 2000; 5(3):153-61. Ramarathnam R, Subramaniam S. PMID: 11252352.
      View in: PubMed   Mentions: 2     Fields:    Translation:Cells
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