Loading...

Stephanie Fraley

Title(s)Associate Professor, Bioengineering
SchoolVc-academic Affairs
Address9500 Gilman Drive #0435
La Jolla CA 92093
Phone8/8-22--5326
vCardDownload vCard

    Collapse Research 
    Collapse Research Activities and Funding
    Digital High Resolution Melt and Machine Learning for Rapid and Specific Diagnosis in Neonatal Sepsis
    NIH/NIAID R01AI134982May 1, 2018 - Apr 30, 2023
    Role: Principal Investigator

    Collapse Bibliographic 
    Collapse Publications
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
    Newest   |   Oldest   |   Most Cited   |   Most Discussed   |   Timeline   |   Field Summary   |   Plain Text
    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Improving Quantitative Power in Digital PCR through Digital High-Resolution Melting. J Clin Microbiol. 2020 May 26; 58(6). Aralar A, Yuan Y, Chen K, Geng Y, Ortiz Velez D, Sinha M, Lawrence SM, Fraley SI. PMID: 32295887.
      View in: PubMed   Mentions:    Fields:    
    2. Cell Adhesiveness Serves as a Biophysical Marker for Metastatic Potential. Cancer Res. 2020 02 15; 80(4):901-911. Beri P, Popravko A, Yeoman B, Kumar A, Chen K, Hodzic E, Chiang A, Banisadr A, Placone JK, Carter H, Fraley SI, Katira P, Engler AJ. PMID: 31857292.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansCells
    3. Emerging themes and unifying concepts underlying cell behavior regulation by the pericellular space. Acta Biomater. 2019 09 15; 96:81-98. Scott KE, Rychel K, Ranamukhaarachchi S, Rangamani P, Fraley SI. PMID: 31176842.
      View in: PubMed   Mentions:    Fields:    Translation:HumansAnimalsCells
    4. 3D collagen architecture regulates cell adhesion through degradability, thereby controlling metabolic and oxidative stress. Integr Biol (Camb). 2019 05 01; 11(5):221-234. Velez DO, Ranamukhaarachchi SK, Kumar A, Modi RN, Lim EW, Engler AJ, Metallo CM, Fraley SI. PMID: 31251330.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansCells
    5. Macromolecular crowding tunes 3D collagen architecture and cell morphogenesis. Biomater Sci. 2019 Jan 29; 7(2):618-633. Ranamukhaarachchi SK, Modi RN, Han A, Velez DO, Kumar A, Engler AJ, Fraley SI. PMID: 30515503.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansCells
    6. A High-Resolution Digital DNA Melting Platform for Robust Sequence Profiling and Enhanced Genotype Discrimination. SLAS Technol. 2018 12; 23(6):580-591. Sinha M, Mack H, Coleman TP, Fraley SI. PMID: 29652558.
      View in: PubMed   Mentions: 1     Fields:    Translation:Cells
    7. A global transcriptional network connecting noncoding mutations to changes in tumor gene expression. Nat Genet. 2018 04; 50(4):613-620. Zhang W, Bojorquez-Gomez A, Velez DO, Xu G, Sanchez KS, Shen JP, Chen K, Licon K, Melton C, Olson KM, Yu MK, Huang JK, Carter H, Farley EK, Snyder M, Fraley SI, Kreisberg JF, Ideker T. PMID: 29610481.
      View in: PubMed   Mentions: 19     Fields:    Translation:HumansCells
    8. Emerging Technologies for Molecular Diagnosis of Sepsis. Clin Microbiol Rev. 2018 04; 31(2). Sinha M, Jupe J, Mack H, Coleman TP, Lawrence SM, Fraley SI. PMID: 29490932.
      View in: PubMed   Mentions: 12     Fields:    Translation:Humans
    9. 3D collagen architecture induces a conserved migratory and transcriptional response linked to vasculogenic mimicry. Nat Commun. 2017 11 21; 8(1):1651. Velez DO, Tsui B, Goshia T, Chute CL, Han A, Carter H, Fraley SI. PMID: 29162797.
      View in: PubMed   Mentions: 17     Fields:    Translation:Humans
    10. Massively parallel digital high resolution melt for rapid and absolutely quantitative sequence profiling. Sci Rep. 2017 02 08; 7:42326. Velez DO, Mack H, Jupe J, Hawker S, Kulkarni N, Hedayatnia B, Zhang Y, Lawrence S, Fraley SI. PMID: 28176860.
      View in: PubMed   Mentions: 5     Fields:    Translation:HumansCells
    11. Nested Machine Learning Facilitates Increased Sequence Content for Large-Scale Automated High Resolution Melt Genotyping. Sci Rep. 2016 Jan 18; 6:19218. Fraley SI, Athamanolap P, Masek BJ, Hardick J, Carroll KC, Hsieh YH, Rothman RE, Gaydos CA, Wang TH, Yang S. PMID: 26778280.
      View in: PubMed   Mentions: 6     Fields:    Translation:Humans
    12. Universal digital high-resolution melt: a novel approach to broad-based profiling of heterogeneous biological samples. Nucleic Acids Res. 2016 Jan 08; 44(1):508. Fraley SI, Hardick J, Masek BJ, Athamanolap P, Rothman RE, Gaydos CA, Carroll KC, Wakefield T, Wang TH, Yang S. PMID: 26476457.
      View in: PubMed   Mentions:    Fields:    
    13. Three-dimensional matrix fiber alignment modulates cell migration and MT1-MMP utility by spatially and temporally directing protrusions. Sci Rep. 2015 Oct 01; 5:14580. Fraley SI, Wu PH, He L, Feng Y, Krisnamurthy R, Longmore GD, Wirtz D. PMID: 26423227.
      View in: PubMed   Mentions: 45     Fields:    Translation:HumansCells
    14. Trainable high resolution melt curve machine learning classifier for large-scale reliable genotyping of sequence variants. PLoS One. 2014; 9(9):e109094. Athamanolap P, Parekh V, Fraley SI, Agarwal V, Shin DJ, Jacobs MA, Wang TH, Yang S. PMID: 25275518.
      View in: PubMed   Mentions: 8     Fields:    Translation:HumansCells
    15. Universal digital high-resolution melt: a novel approach to broad-based profiling of heterogeneous biological samples. Nucleic Acids Res. 2013 Oct; 41(18):e175. Fraley SI, Hardick J, Masek BJ, Jo Masek B, Athamanolap P, Rothman RE, Gaydos CA, Carroll KC, Wakefield T, Wang TH, Yang S. PMID: 23935121.
      View in: PubMed   Mentions: 10     Fields:    Translation:HumansCells
    16. A physical sciences network characterization of non-tumorigenic and metastatic cells. Sci Rep. 2013; 3:1449. Agus DB, Alexander JF, Arap W, Ashili S, Aslan JE, Austin RH, Backman V, Bethel KJ, Bonneau R, Chen WC, Chen-Tanyolac C, Choi NC, Curley SA, Dallas M, Damania D, Davies PC, Decuzzi P, Dickinson L, Estevez-Salmeron L, Estrella V, Ferrari M, Fischbach C, Foo J, Fraley SI, Frantz C, Fuhrmann A, Gascard P, Gatenby RA, Geng Y, Gerecht S, Gillies RJ, Godin B, Grady WM, Greenfield A, Hemphill C, Hempstead BL, Hielscher A, Hillis WD, Holland EC, Ibrahim-Hashim A, Jacks T, Johnson RH, Joo A, Katz JE, Kelbauskas L, Kesselman C, King MR, Konstantopoulos K, Kraning-Rush CM, Kuhn P, Kung K, Kwee B, Lakins JN, Lambert G, Liao D, Licht JD, Liphardt JT, Liu L, Lloyd MC, Lyubimova A, Mallick P, Marko J, McCarty OJ, Meldrum DR, Michor F, Mumenthaler SM, Nandakumar V, O'Halloran TV, Oh S, Pasqualini R, Paszek MJ, Philips KG, Poultney CS, Rana K, Reinhart-King CA, Ros R, Semenza GL, Senechal P, Shuler ML, Srinivasan S, Staunton JR, Stypula Y, Subramanian H, Tlsty TD, Tormoen GW, Tseng Y, van Oudenaarden A, Verbridge SS, Wan JC, Weaver VM, Widom J, Will C, Wirtz D, Wojtkowiak J, Wu PH. PMID: 23618955.
      View in: PubMed   Mentions: 46     Fields:    Translation:HumansCells
    17. NAC1 is an actin-binding protein that is essential for effective cytokinesis in cancer cells. Cancer Res. 2012 Aug 15; 72(16):4085-96. Yap KL, Fraley SI, Thiaville MM, Jinawath N, Nakayama K, Wang J, Wang TL, Wirtz D, Shih IeM. PMID: 22761335.
      View in: PubMed   Mentions: 20     Fields:    Translation:HumansCells
    18. Dimensional and temporal controls of three-dimensional cell migration by zyxin and binding partners. Nat Commun. 2012 Mar 06; 3:719. Fraley SI, Feng Y, Giri A, Longmore GD, Wirtz D. PMID: 22395610.
      View in: PubMed   Mentions: 40     Fields:    Translation:HumansCells
    19. Hypoxia-inducible factor 1 is a master regulator of breast cancer metastatic niche formation. Proc Natl Acad Sci U S A. 2011 Sep 27; 108(39):16369-74. Wong CC, Gilkes DM, Zhang H, Chen J, Wei H, Chaturvedi P, Fraley SI, Wong CM, Khoo US, Ng IO, Wirtz D, Semenza GL. PMID: 21911388.
      View in: PubMed   Mentions: 126     Fields:    Translation:HumansCells
    20. A distinctive role for focal adhesion proteins in three-dimensional cell motility. Nat Cell Biol. 2010 Jun; 12(6):598-604. Fraley SI, Feng Y, Krishnamurthy R, Kim DH, Celedon A, Longmore GD, Wirtz D. PMID: 20473295.
      View in: PubMed   Mentions: 205     Fields:    Translation:Cells
    Stephanie's Networks
    Concepts (128)
    Derived automatically from this person's publications.
    _
    Co-Authors (15)
    People in Profiles who have published with this person.
    _
    Similar People (60)
    People who share similar concepts with this person.
    _
    Same Department
    Search Department
    _