Manish Sud

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Title(s)	Sr Bioinfo Analyst, CACSE
School	Vc-academic Affairs
Address	9500 Gilman Drive # La Jolla CA 92093
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Bibliographic

selected publications

Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.

Altmetrics Details

PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.

Diabetes knowledge, risk and severity perceptions, lifestyle behaviours and management barriers among Sub-Saharan African immigrants living in the UK: an ethnographic study. BMC Public Health. 2025 Aug 22; 25(1):2883. Onuorah L, Santy-Tomlinson J, Draper P. PMID: 40846934; PMCID: PMC12372270.

View in: PubMed Mentions: Fields:
Pub Public Health
Graduate Students' Perspectives on Obtaining a Master's of Science in Respiratory Care. Respir Care. 2025 04; 70(4):384-392. Koster MS, McHenry KL, Caldwell-Chadwick BG, Null MM. PMID: 40193534.

View in: PubMed Mentions: Fields:
Pul Pulmonary Medicine
Translation:Humans
Comparative risk of QTc prolongation induced by second-generation antipsychotics in the real world: retrospective cohort study based on a hospital information system. BJPsych Open. 2025 Mar 10; 11(2):e42. He L, Yu W, Song H, Li L, Shen Y, Zhang L, Li H. PMID: 40059385; PMCID: PMC12001931.

View in: PubMed Mentions:
Association of Lower Rostral Anterior Cingulate GABA+ and Dysregulated Cortisol Stress Response With Altered Functional Connectivity in Young Adults With Lifetime Depression: A Multimodal Imaging Investigation of Trait and State Effects. Am J Psychiatry. 2024 Jul 01; 181(7):639-650. Ironside M, Duda JM, Moser AD, Holsen LM, Zuo CS, Du F, Perlo S, Richards CE, Chen X, Nickerson LD, Null KE, Esfand SM, Alexander MM, Crowley DJ, Lauze M, Misra M, Goldstein JM, Pizzagalli DA. PMID: 38685857; PMCID: PMC11216878.

View in: PubMed Mentions: 3 Fields:
Psy Psychiatry
Translation:Humans
[Determination of trace anions in battery-grade lithium carbonate by double-inhibition on-line matrix-removal ion chromatography]. Se Pu. 2024 Mar 08; 42(3):291-295. Wu G, Wu GQ. PMID: 38503706; PMCID: PMC10951807.

View in: PubMed Mentions: Fields:
Che Chemistry Techniques
Porcine reproductive and respiratory syndrome virus degrades DDX10 via SQSTM1/p62-dependent selective autophagy to antagonize its antiviral activity. Autophagy. 2023 08; 19(8):2257-2274. Li J, Li J, Zhou Y, Zhao W, Zhao W, Liu J, Ullah R, Fang P, Fang L, Xiao S. PMID: 36779599; PMCID: PMC10351467.

View in: PubMed Mentions: 23 Fields:
Cel Cell Biology
Translation:Animals Cells
[Simultaneous determination of 28 fragrance components in cosmetics by gas chromatography-tandem mass spectrometry]. Se Pu. 2023 Jan; 41(1):76-86. Xu D, Wu Y, Wang Y, Chen F, Zhang S, Lai G. PMID: 36633079; PMCID: PMC9841437.

View in: PubMed Mentions: 1 Fields:
Che Chemistry Techniques
[Determination of organophosphate diesters in facility vegetable soils using ultra-high performance liquid chromatography-electrostatic field orbitrap high resolution mass spectrometry]. Se Pu. 2023 Jan; 41(1):58-65. Liu M, Wang M, Zhao A, Zhao A, Zhu L, Wang C, Wei C, Liu W, Xu J. PMID: 36633077; PMCID: PMC9837671.

View in: PubMed Mentions: Fields:
Che Chemistry Techniques
Translation:Humans Animals
DBI/ACBP is a targetable autophagy checkpoint involved in aging and cardiovascular disease. Autophagy. 2023 07; 19(7):2166-2169. Montégut L, Joseph A, Chen H, Abdellatif M, Ruckenstuhl C, Martins I, Madeo F, Kroemer G. PMID: 36579946; PMCID: PMC10283417.

View in: PubMed Mentions: 12 Fields:
Cel Cell Biology
Translation:Humans Animals Cells
Author Correction: Polycomb CBX7 has a unifying role in cellular lifespan. Nat Cell Biol. 2022 Sep; 24(9):1445. Gil J, Bernard D, Martínez D, Beach D. PMID: 35941232.

View in: PubMed Mentions: 1 Fields:
Cel Cell Biology
[Plasma metabolomics in a deep vein thrombosis rat model based on ultra-high performance liquid chromatography-electrostatic field orbitrap high resolution mass spectrometry]. Se Pu. 2022 Aug; 40(8):736-745. Gu Y, Zang P, Li J, Li J, Yan Y, Wang J. PMID: 35903841; PMCID: PMC9404070.

View in: PubMed Mentions: 6 Fields:
Che Chemistry Techniques
Translation:Animals
Autophagy and its mediated mitochondrial quality control maintain pollen tube growth and male fertility in Arabidopsis. Autophagy. 2023 03; 19(3):768-783. Yan H, Zhuang M, Xu X, Li S, Li S, Yang M, Li N, Du X, Hu K, Peng X, Huang W, Wu H, Tse YC, Zhao L, Wang H. PMID: 35786359; PMCID: PMC9980518.

View in: PubMed Mentions: 17 Fields:
Cel Cell Biology
Translation:Animals Cells
Uniform criteria for total hip replacement surgery in patients with hip osteoarthritis: a decision tool to guide treatment decisions. Int J Qual Health Care. 2021 Mar 04; 33(1). Atsma F, Molenkamp O, Bouma H, Bolder SB, Groenewoud AS, Westert GP. PMID: 33616656; PMCID: PMC7941208.

View in: PubMed Mentions: 1 Fields:
Hea Health Services Hea Health Services Research
Translation:Humans
Injury, Illness, and Mental Health Risks in United States Domestic Mariners. J Occup Environ Med. 2020 10; 62(10):839-841. Lefkowitz RY, Null DB, Slade MD, Redlich CA. PMID: 32769797.

View in: PubMed Mentions: 6 Fields:
Env Environmental Health Occ Occupational Medicine
Translation:Humans
Imaging examination, diagnosis, and control and prevention of nosocomial infection for coronavirus disease 2019: Expert consensus of Hunan radiologist. Zhong Nan Da Xue Xue Bao Yi Xue Ban. 2020 Mar 28; 45(3):221-228. Liu J, Wang W. PMID: 32386011.

View in: PubMed Mentions: 2 Fields:
Med Medicine (General)
Translation:Humans Cells PHPublic Health
Discovering and linking public omics data sets using the Omics Discovery Index. Nat Biotechnol. 2017 05 09; 35(5):406-409. Perez-Riverol Y, Bai M, da Veiga Leprevost F, Squizzato S, Park YM, Haug K, Carroll AJ, Spalding D, Paschall J, Wang M, Del-Toro N, Ternent T, Zhang P, Buso N, Bandeira N, Deutsch EW, Campbell DS, Beavis RC, Salek RM, Sarkans U, Petryszak R, Keays M, Fahy E, Sud M, Subramaniam S, Barbera A, Jiménez RC, Nesvizhskii AI, Sansone SA, Steinbeck C, Lopez R, Vizcaíno JA, Ping P, Hermjakob H. PMID: 28486464; PMCID: PMC5831141.

View in: PubMed Mentions: 106 Fields:
Bio Biotechnology
Translation:Humans
MayaChemTools: An Open Source Package for Computational Drug Discovery. J Chem Inf Model. 2016 12 27; 56(12):2292-2297. Sud M. PMID: 28024397.

View in: PubMed Mentions: 39 Fields:
Che Chemistry Med Medical Informatics
Translation:Humans
Metabolomics Workbench: An international repository for metabolomics data and metadata, metabolite standards, protocols, tutorials and training, and analysis tools. Nucleic Acids Res. 2016 Jan 04; 44(D1):D463-70. Sud M, Fahy E, Cotter D, Azam K, Vadivelu I, Burant C, Edison A, Fiehn O, Higashi R, Nair KS, Sumner S, Subramaniam S. PMID: 26467476; PMCID: PMC4702780.

View in: PubMed Mentions: 471 Fields:
Bio Biochemistry
Translation:Humans Animals Cells
A combined omics study on activated macrophages--enhanced role of STATs in apoptosis, immunity and lipid metabolism. Bioinformatics. 2013 Nov 01; 29(21):2735-43. Dinasarapu AR, Gupta S, Ram Maurya M, Fahy E, Min J, Sud M, Gersten MJ, Glass CK, Subramaniam S. PMID: 23981351; PMCID: PMC3799469.

View in: PubMed Mentions: 15 Fields:
Com Computational Biology
Translation:Animals Cells
Analysis of inflammatory and lipid metabolic networks across RAW264.7 and thioglycolate-elicited macrophages. J Lipid Res. 2013 Sep; 54(9):2525-42. Maurya MR, Gupta S, Li X, Fahy E, Dinasarapu AR, Sud M, Brown HA, Glass CK, Murphy RC, Russell DW, Dennis EA, Subramaniam S. PMID: 23776196; PMCID: PMC3735949.

View in: PubMed Mentions: 26 Fields:
Bio Biochemistry
Translation:Animals Cells
Template-based combinatorial enumeration of virtual compound libraries for lipids. J Cheminform. 2012 Sep 25; 4(1):23. Sud M, Fahy E, Subramaniam S. PMID: 23006594; PMCID: PMC3545849.

View in: PubMed Mentions: 10
LIPID MAPS-Nature Lipidomics Gateway: An Online Resource for Students and Educators Interested in Lipids. J Chem Educ. 2012 Jan 10; 89(2):291-292. Sud M, Fahy E, Cotter D, Dennis EA, Subramaniam S. PMID: 24764601; PMCID: PMC3995124.

View in: PubMed Mentions: 25 Fields:
Che Chemistry Edu Education
Bioinformatics and systems biology of the lipidome. Chem Rev. 2011 Oct 12; 111(10):6452-90. Subramaniam S, Fahy E, Gupta S, Sud M, Byrnes RW, Cotter D, Dinasarapu AR, Maurya MR. PMID: 21939287; PMCID: PMC3383319.

View in: PubMed Mentions: 52 Fields:
Che Chemistry
Lipid classification, structures and tools. Biochim Biophys Acta. 2011 Nov; 1811(11):637-47. Fahy E, Cotter D, Sud M, Subramaniam S. PMID: 21704189; PMCID: PMC3995129.

View in: PubMed Mentions: 222 Fields:
Bio Biochemistry Bio Biophysics
Translation:Humans Animals
A mouse macrophage lipidome. J Biol Chem. 2010 Dec 17; 285(51):39976-85. Dennis EA, Deems RA, Harkewicz R, Quehenberger O, Brown HA, Milne SB, Myers DS, Glass CK, Hardiman G, Reichart D, Merrill AH, Sullards MC, Wang E, Murphy RC, Raetz CR, Garrett TA, Guan Z, Ryan AC, Russell DW, McDonald JG, Thompson BM, Shaw WA, Sud M, Zhao Y, Gupta S, Maurya MR, Fahy E, Subramaniam S. PMID: 20923771; PMCID: PMC3000979.

View in: PubMed Mentions: 158 Fields:
Bio Biochemistry
Translation:Animals Cells
Computational Modeling of Kinase Inhibitor Selectivity. ACS Med Chem Lett. 2010 Nov 11; 1(8):395-9. Subramanian G, Sud M. PMID: 26677403; PMCID: PMC4669537.

View in: PubMed Mentions: 6
LIPID MAPS online tools for lipid research. Nucleic Acids Res. 2007 Jul; 35(Web Server issue):W606-12. Fahy E, Sud M, Cotter D, Subramaniam S. PMID: 17584797; PMCID: PMC1933166.

View in: PubMed Mentions: 419 Fields:
Bio Biochemistry
Translation:Humans Cells
Bioinformatics for lipidomics. Methods Enzymol. 2007; 432:247-73. Fahy E, Cotter D, Byrnes R, Sud M, Maer A, Li J, Nadeau D, Zhau Y, Subramaniam S. PMID: 17954221.

View in: PubMed Mentions: 20 Fields:
Bio Biochemistry
Translation:Cells
LMSD: LIPID MAPS structure database. Nucleic Acids Res. 2007 Jan; 35(Database issue):D527-32. Sud M, Fahy E, Cotter D, Brown A, Dennis EA, Glass CK, Merrill AH, Murphy RC, Raetz CR, Russell DW, Subramaniam S. PMID: 17098933; PMCID: PMC1669719.

View in: PubMed Mentions: 600 Fields:
Bio Biochemistry
Translation:Humans Cells