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Manish Sud

Title(s)Sr Bioinfo Analyst, CACSE
SchoolVc-academic Affairs
Address9500 Gilman Drive #
La Jolla CA 92093
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Integrating Smoking Cessation Treatment Into Web-Based Usual Psychological Care for People With Common Mental Illness: Feasibility Randomized Controlled Trial (ESCAPE Digital). JMIR Ment Health. 2025 Dec 05; 12:e78424. Taylor G, Jacobsen P, Blackwell A, Daryan S, Roy D, Duffy D, Hisler G, Sawyer K, Ainsworth B, Hiscock D, Papadakis S, Brown J, Brown J, Brown J, Munafò M, Aveyard P. PMID: 41348446; PMCID: PMC12717507.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    2. WhatsApp-Based Intervention for Diabetes Prevention and Care in Argentina: Implementation and Process Evaluation. JMIR Form Res. 2025 Dec 01; 9:e81098. Nejamis A, Gutierrez L, López MV, Ciganda Cha AD, Mendoza Quispe O, Irazola V, Beratarrechea A. PMID: 41325602; PMCID: PMC12706442.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    3. Social Media Use Among Parents and Caregivers of Children With Rare Genetic Diseases: Scoping Review. J Med Internet Res. 2025 Nov 28; 27:e77087. Davis C, Bogaert L, Powell J, Low K. PMID: 41313807; PMCID: PMC12701349.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    4. AI-Powered Thermography for Diabetic Foot Risk Stratification: Multicenter Cross-Sectional Study. JMIR Form Res. 2025 Nov 27; 9:e81289. Alwashmi MF, Alghali M, Abu-Ashour W, Arabe AM, Al Soheimi A, Alharbi NA, Badahdah HM. PMID: 41308190; PMCID: PMC12699249.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    5. A 6-Month Evaluation of the Peer-Ceived Momentary Assessment Method in a Small Sample of Liver Transplant Patients and Their Support Persons: Longitudinal Observational Study. JMIR Form Res. 2025 Nov 27; 9:e55907. Berrocal A, Concepcion W, Wac K. PMID: 41309085; PMCID: PMC12699256.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    6. Considerations for Patient Privacy of Large Language Models in Health Care: Scoping Review. J Med Internet Res. 2025 Nov 21; 27:e76571. Zhong X, Li S, Li S, Chen Z, Ge L, Yu D, Wang S, You L, Shang H. PMID: 41269747; PMCID: PMC12680930.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    7. Registry-Based Assessment of Shunt Operation Methods and Outcomes in Idiopathic Normal Pressure Hydrocephalus (RASHOMON Study): Protocol for a Multicenter Prospective Observational Cohort Study. JMIR Res Protoc. 2025 Nov 21; 14:e80678. Okumura E, Takeuchi K, Momota H, Nagatani T, Taoka T, Aimi Y, Hashizume A, Okazaki M, Saito R. PMID: 41268971; PMCID: PMC12680931.
      View in: PubMed   Mentions:    Fields:    Translation:HumansCTClinical Trials
    8. Three Body-Worn Accelerometers in the French NutriNet-Santé Cohort: Feasibility and Acceptability Study. JMIR Form Res. 2025 Nov 20; 9:e76167. Soumaré A, Fezeu LK, Bouchan J, Delestre F, Bellicha A, Cardon G, Donnelly A, Hebestreit A, Touvier M, Oppert JM, Vanhelst J. PMID: 41264348; PMCID: PMC12679073.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    9. Implementation of the German Clinical Practice Guideline for Multimorbidity Using a Digital Tool in Primary Care: Pilot Cluster Randomized Clinical Trial. JMIR Aging. 2025 Nov 20; 8:e79767. Nothacker J, Paucke V, Lezius S, Zapf A, Lühmann D, Scherer M, Schäfer I. PMID: 41263476; PMCID: PMC12679070.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    10. Optimizing Workplace Digital Mental Health Interventions: Systematic Review and Meta-Analysis. J Med Internet Res. 2025 Nov 17; 27:e71253. Stratton E, Morris RW, Milton A, Deady M, Choi I, Glozier N. PMID: 41247788; PMCID: PMC12670063.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    11. Development of a Virtual Home-Based Cycling Intervention for Individuals With Chronic Obstructive Pulmonary Disease: Qualitative Study. JMIR Form Res. 2025 Nov 14; 9:e71234. Christensen KK, Bøggild H, Weinreich UM, Stoustrup AL. PMID: 41237402; PMCID: PMC12663703.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    12. Embracing the Future of Medical Education With Large Language Model-Based Virtual Patients: Scoping Review. J Med Internet Res. 2025 Nov 13; 27:e79091. Zeng J, Qi W, Shen S, Liu X, Liu X, Li S, Li S, Wang B, Dong C, Zhu X, Shi Y, Lou X, Wang B, Yao J, Jiang G, Zhang Q, Cao S. PMID: 41232097; PMCID: PMC12661241.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    13. Automated Personalized Goal Setting for Individual Exercise Behavior: Protocol for a Web-Based Adaptive Intervention Trial. JMIR Res Protoc. 2025 Nov 12; 14:e73766. Caro JC, Nguyen PH, Lipman S. PMID: 41222972; PMCID: PMC12658392.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    14. Efficacy of Preventive Pressurized Intraperitoneal Aerosol Chemotherapy in Patients With Locally Advanced Gastric Cancer: Protocol for a Prospective Controlled Trial. JMIR Res Protoc. 2025 Nov 11; 14:e78053. Kerimkulov A, Uskenbayev T, Sarina T, Mamlin M, Shalekenov S, Yessenbayeva G, Kainazarov T, Burkitbayev Z, Ussipbekov B, Kovalchuk D, Rakhmankulov A, Rakhmankulova A, Gaipov A. PMID: 41218205; PMCID: PMC12648122.
      View in: PubMed   Mentions:    Fields:    Translation:HumansCTClinical Trials
    15. Expectant Mothers' Reflections on Childhood and Parenting: Cross-Sectional Study. JMIR Form Res. 2025 Nov 07; 9:e80060. Mjølstad BP, Vie GÅ, Getz LO, Hansen MH, Mørkved HS, Austad B. PMID: 41202304; PMCID: PMC12639342.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    16. Diabetes knowledge, risk and severity perceptions, lifestyle behaviours and management barriers among Sub-Saharan African immigrants living in the UK: an ethnographic study. BMC Public Health. 2025 Aug 22; 25(1):2883. Onuorah L, Santy-Tomlinson J, Draper P. PMID: 40846934; PMCID: PMC12372270.
      View in: PubMed   Mentions:    Fields:    
    17. Graduate Students' Perspectives on Obtaining a Master's of Science in Respiratory Care. Respir Care. 2025 04; 70(4):384-392. Koster MS, McHenry KL, Caldwell-Chadwick BG, Null MM. PMID: 40193534.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    18. Comparative risk of QTc prolongation induced by second-generation antipsychotics in the real world: retrospective cohort study based on a hospital information system. BJPsych Open. 2025 Mar 10; 11(2):e42. He L, Yu W, Song H, Li L, Shen Y, Zhang L, Li H. PMID: 40059385; PMCID: PMC12001931.
      View in: PubMed   Mentions: 1  
    19. Association of Lower Rostral Anterior Cingulate GABA+ and Dysregulated Cortisol Stress Response With Altered Functional Connectivity in Young Adults With Lifetime Depression: A Multimodal Imaging Investigation of Trait and State Effects. Am J Psychiatry. 2024 Jul 01; 181(7):639-650. Ironside M, Duda JM, Moser AD, Holsen LM, Zuo CS, Du F, Perlo S, Richards CE, Chen X, Chen X, Nickerson LD, Null KE, Esfand SM, Alexander MM, Crowley DJ, Lauze M, Misra M, Goldstein JM, Pizzagalli DA. PMID: 38685857; PMCID: PMC11216878.
      View in: PubMed   Mentions: 3     Fields:    Translation:Humans
    20. [Determination of trace anions in battery-grade lithium carbonate by double-inhibition on-line matrix-removal ion chromatography]. Se Pu. 2024 Mar 08; 42(3):291-295. Wu G, Wu G, Wu GQ. PMID: 38503706; PMCID: PMC10951807.
      View in: PubMed   Mentions:    Fields:    
    21. Porcine reproductive and respiratory syndrome virus degrades DDX10 via SQSTM1/p62-dependent selective autophagy to antagonize its antiviral activity. Autophagy. 2023 08; 19(8):2257-2274. Li J, Li J, Zhou Y, Zhao W, Zhao W, Liu J, Liu J, Ullah R, Fang P, Fang L, Xiao S. PMID: 36779599; PMCID: PMC10351467.
      View in: PubMed   Mentions: 30     Fields:    Translation:AnimalsCells
    22. [Simultaneous determination of 28 fragrance components in cosmetics by gas chromatography-tandem mass spectrometry]. Se Pu. 2023 Jan; 41(1):76-86. Xu D, Wu Y, Wu Y, Wang Y, Chen F, Chen F, Zhang S, Lai G. PMID: 36633079; PMCID: PMC9841437.
      View in: PubMed   Mentions: 1     Fields:    
    23. [Determination of organophosphate diesters in facility vegetable soils using ultra-high performance liquid chromatography-electrostatic field orbitrap high resolution mass spectrometry]. Se Pu. 2023 Jan; 41(1):58-65. Liu M, Wang M, Zhao A, Zhao A, Zhu L, Wang C, Wei C, Liu W, Liu W, Xu J. PMID: 36633077; PMCID: PMC9837671.
      View in: PubMed   Mentions:    Fields:    Translation:HumansAnimals
    24. DBI/ACBP is a targetable autophagy checkpoint involved in aging and cardiovascular disease. Autophagy. 2023 07; 19(7):2166-2169. Montégut L, Joseph A, Chen H, Chen H, Abdellatif M, Ruckenstuhl C, Martins I, Madeo F, Kroemer G. PMID: 36579946; PMCID: PMC10283417.
      View in: PubMed   Mentions: 11     Fields:    Translation:HumansAnimalsCells
    25. Author Correction: Polycomb CBX7 has a unifying role in cellular lifespan. Nat Cell Biol. 2022 Sep; 24(9):1445. Gil J, Bernard D, Martínez D, Beach D. PMID: 35941232.
      View in: PubMed   Mentions: 1     Fields:    
    26. Acute Vision Loss Sequela of Complex Regional Pain Syndrome Type 1 Successfully Treated with Stellate Ganglion Block: Case Report. Pain Med Case Rep. 2022 Sep; 6(5):155-158. Lu L, Hillegass MG. PMID: 41299926.
      View in: PubMed   Mentions:    Fields:    
    27. A Resolving Hematoma Causing Cortical Hand Syndrome Mistaken as a Hemorrhagic Tumor in a Patient Presenting for Sacroiliac Joint Injection: Case Report. Pain Med Case Rep. 2022 Sep; 6(5):195-197. Lu L, Hussey P, Burke MD. PMID: 41299934.
      View in: PubMed   Mentions:    Fields:    
    28. [Plasma metabolomics in a deep vein thrombosis rat model based on ultra-high performance liquid chromatography-electrostatic field orbitrap high resolution mass spectrometry]. Se Pu. 2022 Aug; 40(8):736-745. Gu Y, Zang P, Li J, Li J, Yan Y, Wang J. PMID: 35903841; PMCID: PMC9404070.
      View in: PubMed   Mentions: 6     Fields:    Translation:Animals
    29. Autophagy and its mediated mitochondrial quality control maintain pollen tube growth and male fertility in Arabidopsis. Autophagy. 2023 03; 19(3):768-783. Yan H, Zhuang M, Xu X, Li S, Li S, Yang M, Li N, Du X, Hu K, Peng X, Huang W, Huang W, Wu H, Wu H, Tse YC, Zhao L, Wang H. PMID: 35786359; PMCID: PMC9980518.
      View in: PubMed   Mentions: 16     Fields:    Translation:AnimalsCells
    30. Uniform criteria for total hip replacement surgery in patients with hip osteoarthritis: a decision tool to guide treatment decisions. Int J Qual Health Care. 2021 Mar 04; 33(1). Atsma F, Molenkamp O, Bouma H, Bolder SB, Groenewoud AS, Westert GP. PMID: 33616656; PMCID: PMC7941208.
      View in: PubMed   Mentions: 1     Fields:    Translation:Humans
    31. Injury, Illness, and Mental Health Risks in United States Domestic Mariners. J Occup Environ Med. 2020 10; 62(10):839-841. Lefkowitz RY, Null DB, Slade MD, Redlich CA. PMID: 32769797.
      View in: PubMed   Mentions: 7     Fields:    Translation:Humans
    32. Imaging examination, diagnosis, and control and prevention of nosocomial infection for coronavirus disease 2019: Expert consensus of Hunan radiologist. Zhong Nan Da Xue Xue Bao Yi Xue Ban. 2020 Mar 28; 45(3):221-228. Liu J, Liu J, Liu J, Wang W. PMID: 32386011.
      View in: PubMed   Mentions: 2     Fields:    Translation:HumansCellsPHPublic Health
    33. Discovering and linking public omics data sets using the Omics Discovery Index. Nat Biotechnol. 2017 05 09; 35(5):406-409. Perez-Riverol Y, Bai M, da Veiga Leprevost F, Squizzato S, Park YM, Haug K, Carroll AJ, Spalding D, Paschall J, Wang M, Del-Toro N, Ternent T, Zhang P, Buso N, Bandeira N, Deutsch EW, Campbell DS, Beavis RC, Salek RM, Sarkans U, Petryszak R, Keays M, Fahy E, Sud M, Subramaniam S, Barbera A, Jiménez RC, Nesvizhskii AI, Sansone SA, Steinbeck C, Lopez R, Vizcaíno JA, Ping P, Hermjakob H. PMID: 28486464; PMCID: PMC5831141.
      View in: PubMed   Mentions: 110     Fields:    Translation:Humans
    34. MayaChemTools: An Open Source Package for Computational Drug Discovery. J Chem Inf Model. 2016 12 27; 56(12):2292-2297. Sud M. PMID: 28024397.
      View in: PubMed   Mentions: 41     Fields:    Translation:Humans
    35. Metabolomics Workbench: An international repository for metabolomics data and metadata, metabolite standards, protocols, tutorials and training, and analysis tools. Nucleic Acids Res. 2016 Jan 04; 44(D1):D463-70. Sud M, Fahy E, Cotter D, Azam K, Vadivelu I, Burant C, Edison A, Fiehn O, Higashi R, Nair KS, Sumner S, Subramaniam S. PMID: 26467476; PMCID: PMC4702780.
      View in: PubMed   Mentions: 471     Fields:    Translation:HumansAnimalsCells
    36. A combined omics study on activated macrophages--enhanced role of STATs in apoptosis, immunity and lipid metabolism. Bioinformatics. 2013 Nov 01; 29(21):2735-43. Dinasarapu AR, Gupta S, Ram Maurya M, Fahy E, Min J, Sud M, Gersten MJ, Glass CK, Subramaniam S. PMID: 23981351; PMCID: PMC3799469.
      View in: PubMed   Mentions: 16     Fields:    Translation:AnimalsCells
    37. Analysis of inflammatory and lipid metabolic networks across RAW264.7 and thioglycolate-elicited macrophages. J Lipid Res. 2013 Sep; 54(9):2525-42. Maurya MR, Gupta S, Li X, Fahy E, Dinasarapu AR, Sud M, Brown HA, Glass CK, Murphy RC, Russell DW, Dennis EA, Subramaniam S. PMID: 23776196; PMCID: PMC3735949.
      View in: PubMed   Mentions: 26     Fields:    Translation:AnimalsCells
    38. Template-based combinatorial enumeration of virtual compound libraries for lipids. J Cheminform. 2012 Sep 25; 4(1):23. Sud M, Fahy E, Subramaniam S. PMID: 23006594; PMCID: PMC3545849.
      View in: PubMed   Mentions: 10  
    39. LIPID MAPS-Nature Lipidomics Gateway: An Online Resource for Students and Educators Interested in Lipids. J Chem Educ. 2012 Jan 10; 89(2):291-292. Sud M, Fahy E, Cotter D, Dennis EA, Subramaniam S. PMID: 24764601; PMCID: PMC3995124.
      View in: PubMed   Mentions: 24     Fields:    
    40. Bioinformatics and systems biology of the lipidome. Chem Rev. 2011 Oct 12; 111(10):6452-90. Subramaniam S, Fahy E, Gupta S, Sud M, Byrnes RW, Cotter D, Dinasarapu AR, Maurya MR. PMID: 21939287; PMCID: PMC3383319.
      View in: PubMed   Mentions: 50     Fields:    
    41. Lipid classification, structures and tools. Biochim Biophys Acta. 2011 Nov; 1811(11):637-47. Fahy E, Cotter D, Sud M, Subramaniam S. PMID: 21704189; PMCID: PMC3995129.
      View in: PubMed   Mentions: 230     Fields:    Translation:HumansAnimals
    42. A mouse macrophage lipidome. J Biol Chem. 2010 Dec 17; 285(51):39976-85. Dennis EA, Deems RA, Harkewicz R, Quehenberger O, Brown HA, Milne SB, Myers DS, Glass CK, Hardiman G, Reichart D, Merrill AH, Sullards MC, Wang E, Murphy RC, Raetz CR, Garrett TA, Guan Z, Ryan AC, Russell DW, McDonald JG, Thompson BM, Shaw WA, Sud M, Zhao Y, Gupta S, Maurya MR, Fahy E, Subramaniam S. PMID: 20923771; PMCID: PMC3000979.
      View in: PubMed   Mentions: 161     Fields:    Translation:AnimalsCells
    43. Computational Modeling of Kinase Inhibitor Selectivity. ACS Med Chem Lett. 2010 Nov 11; 1(8):395-9. Subramanian G, Sud M. PMID: 26677403; PMCID: PMC4669537.
      View in: PubMed   Mentions: 6  
    44. LIPID MAPS online tools for lipid research. Nucleic Acids Res. 2007 Jul; 35(Web Server issue):W606-12. Fahy E, Sud M, Cotter D, Subramaniam S. PMID: 17584797; PMCID: PMC1933166.
      View in: PubMed   Mentions: 428     Fields:    Translation:HumansCells
    45. Bioinformatics for lipidomics. Methods Enzymol. 2007; 432:247-73. Fahy E, Cotter D, Byrnes R, Sud M, Maer A, Li J, Nadeau D, Zhau Y, Subramaniam S. PMID: 17954221.
      View in: PubMed   Mentions: 20     Fields:    Translation:Cells
    46. LMSD: LIPID MAPS structure database. Nucleic Acids Res. 2007 Jan; 35(Database issue):D527-32. Sud M, Fahy E, Cotter D, Brown A, Dennis EA, Glass CK, Merrill AH, Murphy RC, Raetz CR, Russell DW, Subramaniam S. PMID: 17098933; PMCID: PMC1669719.
      View in: PubMed   Mentions: 617     Fields:    Translation:HumansCells
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