Shakti Gupta

Title(s)	Sr Bioinfo Analyst, Bioengineering
School	Vc-academic Affairs
Address	9500 Gilman Drive # La Jolla CA 92093
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Bibliographic

Publications

Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.

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PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.

Temporal transcriptional control of neural induction in human induced pluripotent stem cells. Front Mol Neurosci. 2023; 16:1139287. Gupta S, Polit LD, Fitzgerald M, Rowland HA, Murali D, Buckley NJ, Subramaniam S. PMID: 37213689; PMCID: PMC10195998.

View in: PubMed Mentions:
Longitudinal shear stress response in human endothelial cells to atheroprone and atheroprotective conditions. Proc Natl Acad Sci U S A. 2021 01 26; 118(4). Maurya MR, Gupta S, Li JY, Ajami NE, Chen ZB, Shyy JY, Chien S, Subramaniam S. PMID: 33468662; PMCID: PMC7848718.

View in: PubMed Mentions: 20 Fields:
Sci Science
Translation:Humans Cells
Systems biology analysis of longitudinal functional response of endothelial cells to shear stress. Proc Natl Acad Sci U S A. 2017 10 10; 114(41):10990-10995. Ajami NE, Gupta S, Maurya MR, Nguyen P, Li JY, Shyy JY, Chen Z, Chien S, Subramaniam S. PMID: 28973892; PMCID: PMC5642700.

View in: PubMed Mentions: 60 Fields:
Sci Science
Translation:Humans Cells
Krüppel-Like Factor 4 Regulation of Cholesterol-25-Hydroxylase and Liver X Receptor Mitigates Atherosclerosis Susceptibility. Circulation. 2017 Oct 03; 136(14):1315-1330. Li Z, Martin M, Zhang J, Huang HY, Bai L, Zhang J, Kang J, He M, Li J, Maurya MR, Gupta S, Zhou G, Sangwung P, Xu YJ, Lei T, Huang HD, Jain M, Jain MK, Subramaniam S, Shyy JY. PMID: 28794002; PMCID: PMC5741092.

View in: PubMed Mentions: 45 Fields:
Car Cardiology Vas Vascular Diseases
Translation:Humans Animals
Systems Analysis of the Complement-Induced Priming Phase of Liver Regeneration. J Immunol. 2016 09 15; 197(6):2500-8. Min JS, DeAngelis RA, Reis ES, Gupta S, Maurya MR, Evans C, Das A, Burant C, Lambris JD, Subramaniam S. PMID: 27511733; PMCID: PMC5038987.

View in: PubMed Mentions: 11 Fields:
All Allergy and Immunology
Translation:Animals Cells
Computational Modeling of Competitive Metabolism between ω3- and ω6-Polyunsaturated Fatty Acids in Inflammatory Macrophages. J Phys Chem B. 2016 08 25; 120(33):8346-53. Gupta S, Kihara Y, Maurya MR, Norris PC, Dennis EA, Subramaniam S. PMID: 27063350; PMCID: PMC5024554.

View in: PubMed Mentions: 5 Fields:
Che Chemistry
Translation:Animals Cells
Serum microRNAs explain discordance of non-alcoholic fatty liver disease in monozygotic and dizygotic twins: a prospective study. Gut. 2016 09; 65(9):1546-54. Zarrinpar A, Gupta S, Maurya MR, Subramaniam S, Loomba R. PMID: 26002934; PMCID: PMC5089367.

View in: PubMed Mentions: 46 Fields:
Gas Gastroenterology
Translation:Humans
Modeling of eicosanoid fluxes reveals functional coupling between cyclooxygenases and terminal synthases. Biophys J. 2014 Feb 18; 106(4):966-75. Kihara Y, Gupta S, Maurya MR, Armando A, Shah I, Quehenberger O, Glass CK, Dennis EA, Subramaniam S. PMID: 24559999; PMCID: PMC3945033.

View in: PubMed Mentions: 17 Fields:
Bio Biophysics
Translation:Animals Cells
A combined omics study on activated macrophages--enhanced role of STATs in apoptosis, immunity and lipid metabolism. Bioinformatics. 2013 Nov 01; 29(21):2735-43. Dinasarapu AR, Gupta S, Ram Maurya M, Fahy E, Min J, Sud M, Gersten MJ, Glass CK, Subramaniam S. PMID: 23981351; PMCID: PMC3799469.

View in: PubMed Mentions: 11 Fields:
Com Computational Biology
Translation:Animals Cells
Analysis of inflammatory and lipid metabolic networks across RAW264.7 and thioglycolate-elicited macrophages. J Lipid Res. 2013 Sep; 54(9):2525-42. Maurya MR, Gupta S, Li X, Fahy E, Dinasarapu AR, Sud M, Brown HA, Glass CK, Murphy RC, Russell DW, Dennis EA, Subramaniam S. PMID: 23776196; PMCID: PMC3735949.

View in: PubMed Mentions: 24 Fields:
Bio Biochemistry
Translation:Animals Cells
Bioinformatics and systems biology of the lipidome. Chem Rev. 2011 Oct 12; 111(10):6452-90. Subramaniam S, Fahy E, Gupta S, Sud M, Byrnes RW, Cotter D, Dinasarapu AR, Maurya MR. PMID: 21939287; PMCID: PMC3383319.

View in: PubMed Mentions: 46 Fields:
Che Chemistry
Integration of lipidomics and transcriptomics data towards a systems biology model of sphingolipid metabolism. BMC Syst Biol. 2011 Feb 08; 5:26. Gupta S, Maurya MR, Merrill AH, Glass CK, Subramaniam S. PMID: 21303545; PMCID: PMC3047436.

View in: PubMed Mentions: 22 Fields:
Com Computational Biology
Translation:Animals Cells
A mouse macrophage lipidome. J Biol Chem. 2010 Dec 17; 285(51):39976-85. Dennis EA, Deems RA, Harkewicz R, Quehenberger O, Brown HA, Milne SB, Myers DS, Glass CK, Hardiman G, Reichart D, Merrill AH, Sullards MC, Wang E, Murphy RC, Raetz CR, Garrett TA, Guan Z, Ryan AC, Russell DW, McDonald JG, Thompson BM, Shaw WA, Sud M, Zhao Y, Gupta S, Maurya MR, Fahy E, Subramaniam S. PMID: 20923771; PMCID: PMC3000979.

View in: PubMed Mentions: 138 Fields:
Bio Biochemistry
Translation:Animals Cells
Identification of crosstalk between phosphoprotein signaling pathways in RAW 264.7 macrophage cells. PLoS Comput Biol. 2010 Jan 29; 6(1):e1000654. Gupta S, Maurya MR, Subramaniam S. PMID: 20126526; PMCID: PMC2813256.

View in: PubMed Mentions: 8 Fields:
Com Computational Biology
Translation:Animals Cells
An integrated model of eicosanoid metabolism and signaling based on lipidomics flux analysis. Biophys J. 2009 Jun 03; 96(11):4542-51. Gupta S, Maurya MR, Stephens DL, Dennis EA, Subramaniam S. PMID: 19486676; PMCID: PMC2711499.

View in: PubMed Mentions: 26 Fields:
Bio Biophysics
Translation:Cells