Zhouxin Shen

Title(s)	, Division of Biological Science
School	Vc-academic Affairs
Address	9500 Gilman Drive # La Jolla CA 92093
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Publications

Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.

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Suppression of pinoid mutant phenotypes by mutations in PIN-FORMED 1 and PIN1-GFP fusion. Proc Natl Acad Sci U S A. 2023 Nov 28; 120(48):e2312918120. Mudgett M, Shen Z, Dai X, Briggs SP, Zhao Y. PMID: 37983505; PMCID: PMC10691239.

View in: PubMed Mentions: Fields:
Sci Science
Translation:Animals
Plant height heterosis is quantitatively associated with expression levels of plastid ribosomal proteins. Proc Natl Acad Sci U S A. 2021 11 23; 118(47). Birdseye D, de Boer LA, Bai H, Zhou P, Shen Z, Schmelz EA, Springer NM, Briggs SP. PMID: 34782463; PMCID: PMC8617506.

View in: PubMed Mentions: 7 Fields:
Sci Science
Translation:Animals Cells
Genetic elucidation of interconnected antibiotic pathways mediating maize innate immunity. Nat Plants. 2020 11; 6(11):1375-1388. Ding Y, Weckwerth PR, Poretsky E, Murphy KM, Sims J, Saldivar E, Christensen SA, Char SN, Yang B, Tong AD, Shen Z, Kremling KA, Buckler ES, Kono T, Nelson DR, Bohlmann J, Bakker MG, Vaughan MM, Khalil AS, Betsiashvili M, Dressano K, Köllner TG, Briggs SP, Zerbe P, Schmelz EA, Huffaker A. PMID: 33106639.

View in: PubMed Mentions: 30 Fields:
Bot Botany Gen Genetics
Translation:Animals
Wnt5a induces ROR1 to recruit cortactin to promote breast-cancer migration and metastasis. NPJ Breast Cancer. 2019; 5:35. Hasan MK, Widhopf GF, Zhang S, Lam SM, Shen Z, Briggs SP, Parker BA, Kipps TJ. PMID: 31667337; PMCID: PMC6814774.

View in: PubMed Mentions: 14
Multiple genes recruited from hormone pathways partition maize diterpenoid defences. Nat Plants. 2019 10; 5(10):1043-1056. Ding Y, Murphy KM, Poretsky E, Mafu S, Yang B, Char SN, Christensen SA, Saldivar E, Wu M, Wang Q, Ji L, Schmitz RJ, Kremling KA, Buckler ES, Shen Z, Briggs SP, Bohlmann J, Sher A, Castro-Falcon G, Hughes CC, Huffaker A, Zerbe P, Schmelz EA. PMID: 31527844.

View in: PubMed Mentions: 36 Fields:
Bot Botany Gen Genetics
Translation:Animals
Magnesium Flux Modulates Ribosomes to Increase Bacterial Survival. Cell. 2019 04 04; 177(2):352-360.e13. Lee DD, Galera-Laporta L, Bialecka-Fornal M, Moon EC, Shen Z, Briggs SP, Garcia-Ojalvo J, Süel GM. PMID: 30853217; PMCID: PMC6814349.

View in: PubMed Mentions: 49 Fields:
Cel Cell Biology
Translation:Cells
The Dictyostelium GSK3 kinase GlkA coordinates signal relay and chemotaxis in response to growth conditions. Dev Biol. 2018 03 01; 435(1):56-72. Lacal Romero J, Shen Z, Baumgardner K, Wei J, Briggs SP, Firtel RA. PMID: 29355521.

View in: PubMed Mentions: 4 Fields:
Bio Biology Emb Embryology
Translation:Animals Cells
Fungal-induced protein hyperacetylation in maize identified by acetylome profiling. Proc Natl Acad Sci U S A. 2018 01 02; 115(1):210-215. Walley JW, Shen Z, McReynolds MR, Schmelz EA, Briggs SP. PMID: 29259121; PMCID: PMC5776827.

View in: PubMed Mentions: 35 Fields:
Sci Science
Translation:Animals Cells
Integration of omic networks in a developmental atlas of maize. Science. 2016 Aug 19; 353(6301):814-8. Walley JW, Sartor RC, Shen Z, Schmitz RJ, Wu KJ, Urich MA, Nery JR, Smith LG, Schnable JC, Ecker JR, Briggs SP. PMID: 27540173; PMCID: PMC5808982.

View in: PubMed Mentions: 184 Fields:
Sci Science
Translation:Animals Cells
Proteomics studies of the interactome of RNA polymerase II C-terminal repeated domain. BMC Res Notes. 2015 Oct 29; 8:616. Pineda G, Shen Z, de Albuquerque CP, Reynoso E, Chen J, Tu CC, Tang W, Briggs S, Zhou H, Wang JY. PMID: 26515650; PMCID: PMC4627417.

View in: PubMed Mentions: 8 Fields:
Bio Biology Med Medicine (General)
Translation:Humans Cells
Plastid-produced interorgannellar stress signal MEcPP potentiates induction of the unfolded protein response in endoplasmic reticulum. Proc Natl Acad Sci U S A. 2015 May 12; 112(19):6212-7. Walley J, Xiao Y, Wang JZ, Baidoo EE, Keasling JD, Shen Z, Briggs SP, Dehesh K. PMID: 25922532; PMCID: PMC4434691.

View in: PubMed Mentions: 46 Fields:
Sci Science
Translation:Animals Cells
A high-resolution tissue-specific proteome and phosphoproteome atlas of maize primary roots reveals functional gradients along the root axes. Plant Physiol. 2015 May; 168(1):233-46. Marcon C, Malik WA, Walley JW, Shen Z, Paschold A, Smith LG, Piepho HP, Briggs SP, Hochholdinger F. PMID: 25780097; PMCID: PMC4424028.

View in: PubMed Mentions: 20 Fields:
Phy Physiology
Translation:Animals Cells
Stemness factor Sall4 is required for DNA damage response in embryonic stem cells. J Cell Biol. 2015 Mar 02; 208(5):513-20. Xiong J, Todorova D, Su NY, Kim J, Lee PJ, Shen Z, Briggs SP, Xu Y. PMID: 25733712; PMCID: PMC4347641.

View in: PubMed Mentions: 30 Fields:
Cel Cell Biology
Translation:Animals Cells
UV irradiation accelerates amyloid precursor protein (APP) processing and disrupts APP axonal transport. J Neurosci. 2014 Feb 26; 34(9):3320-39. Almenar-Queralt A, Falzone TL, Shen Z, Lillo C, Killian RL, Arreola AS, Niederst ED, Ng KS, Kim SN, Briggs SP, Williams DS, Goldstein LS. PMID: 24573290; PMCID: PMC3935090.

View in: PubMed Mentions: 12 Fields:
Neu Neurology
Translation:Humans Animals Cells
ROR1 can interact with TCL1 and enhance leukemogenesis in Eμ-TCL1 transgenic mice. Proc Natl Acad Sci U S A. 2014 Jan 14; 111(2):793-8. Widhopf GF, Cui B, Ghia EM, Chen L, Messer K, Shen Z, Briggs SP, Croce CM, Kipps TJ. PMID: 24379361; PMCID: PMC3896194.

View in: PubMed Mentions: 50 Fields:
Sci Science
Translation:Humans Animals Cells
Reconstruction of protein networks from an atlas of maize seed proteotypes. Proc Natl Acad Sci U S A. 2013 Dec 03; 110(49):E4808-17. Walley JW, Shen Z, Sartor R, Wu KJ, Osborn J, Smith LG, Briggs SP. PMID: 24248366; PMCID: PMC3856832.

View in: PubMed Mentions: 58 Fields:
Sci Science
Translation:Animals Cells
An automated proteogenomic method uses mass spectrometry to reveal novel genes in Zea mays. Mol Cell Proteomics. 2014 Jan; 13(1):157-67. Castellana NE, Shen Z, He Y, Walley JW, Cassidy CJ, Briggs SP, Bafna V. PMID: 24142994; PMCID: PMC3879611.

View in: PubMed Mentions: 30 Fields:
Bio Biochemistry Cel Cell Biology Mol Molecular Biology
Translation:Humans Animals
Parallel proteomic and phosphoproteomic analyses of successive stages of maize leaf development. Plant Cell. 2013 Aug; 25(8):2798-812. Facette MR, Shen Z, Björnsdóttir FR, Briggs SP, Smith LG. PMID: 23933881; PMCID: PMC3784581.

View in: PubMed Mentions: 41 Fields:
Bot Botany Cel Cell Biology
Translation:Animals Cells
Identification of PAN2 by quantitative proteomics as a leucine-rich repeat-receptor-like kinase acting upstream of PAN1 to polarize cell division in maize. Plant Cell. 2012 Nov; 24(11):4577-89. Zhang X, Facette M, Humphries JA, Shen Z, Park Y, Sutimantanapi D, Sylvester AW, Briggs SP, Smith LG. PMID: 23175742; PMCID: PMC3531853.

View in: PubMed Mentions: 38 Fields:
Bot Botany Cel Cell Biology
Translation:Animals Cells
Daydreamer, a Ras effector and GSK-3 substrate, is important for directional sensing and cell motility. Mol Biol Cell. 2013 Jan; 24(2):100-14. Kölsch V, Shen Z, Lee S, Plak K, Lotfi P, Chang J, Charest PG, Romero JL, Jeon TJ, Kortholt A, Briggs SP, Firtel RA. PMID: 23135995; PMCID: PMC3541958.

View in: PubMed Mentions: 8 Fields:
Cel Cell Biology Mol Molecular Biology
Translation:Animals Cells
Robust expression and secretion of Xylanase1 in Chlamydomonas reinhardtii by fusion to a selection gene and processing with the FMDV 2A peptide. PLoS One. 2012; 7(8):e43349. Rasala BA, Lee PA, Shen Z, Briggs SP, Mendez M, Mayfield SP. PMID: 22937037; PMCID: PMC3427385.

View in: PubMed Mentions: 70 Fields:
Med Medicine (General)Sci Science
Translation:Animals Cells
Heterologous expression of the C-terminal antigenic domain of the malaria vaccine candidate Pfs48/45 in the green algae Chlamydomonas reinhardtii. Appl Microbiol Biotechnol. 2013 Mar; 97(5):1987-95. Jones CS, Luong T, Hannon M, Tran M, Gregory JA, Shen Z, Briggs SP, Mayfield SP. PMID: 22592550.

View in: PubMed Mentions: 30 Fields:
Bio Biotechnology Mic Microbiology
Translation:Animals Cells
Accurate mass spectrometry based protein quantification via shared peptides. J Comput Biol. 2012 Apr; 19(4):337-48. Dost B, Bandeira N, Li X, Shen Z, Briggs SP, Bafna V. PMID: 22414154; PMCID: PMC3317402.

View in: PubMed Mentions: 23 Fields:
Com Computational Biology Mol Molecular Biology
Translation:Animals Cells
Biochemical and phosphoproteomic analysis of the helix-loop-helix protein E47. Mol Cell Biol. 2012 May; 32(9):1671-82. Teachenor R, Beck K, Wright LY, Shen Z, Briggs SP, Murre C. PMID: 22354994; PMCID: PMC3347234.

View in: PubMed Mentions: 16 Fields:
Cel Cell Biology Mol Molecular Biology
Translation:Humans Animals Cells
The LRRK2-related Roco kinase Roco2 is regulated by Rab1A and controls the actin cytoskeleton. Mol Biol Cell. 2011 Jul 01; 22(13):2198-211. Kicka S, Shen Z, Annesley SJ, Fisher PR, Lee S, Briggs S, Firtel RA. PMID: 21551065; PMCID: PMC3128523.

View in: PubMed Mentions: 8 Fields:
Cel Cell Biology Mol Molecular Biology
Translation:Animals Cells
Regulation of STIM1 and SOCE by the ubiquitin-proteasome system (UPS). PLoS One. 2010 Oct 18; 5(10):e13465. Keil JM, Shen Z, Briggs SP, Patrick GN. PMID: 20976103; PMCID: PMC2956693.

View in: PubMed Mentions: 26 Fields:
Med Medicine (General)Sci Science
Translation:Humans Animals Cells
Quantitative proteome analysis of pluripotent cells by iTRAQ mass tagging reveals post-transcriptional regulation of proteins required for ES cell self-renewal. Mol Cell Proteomics. 2010 Oct; 9(10):2238-51. O'Brien RN, Shen Z, Tachikawa K, Lee PA, Briggs SP. PMID: 20513800; PMCID: PMC2953917.

View in: PubMed Mentions: 23 Fields:
Bio Biochemistry Cel Cell Biology Mol Molecular Biology
Translation:Animals Cells
A Ras signaling complex controls the RasC-TORC2 pathway and directed cell migration. Dev Cell. 2010 May 18; 18(5):737-49. Charest PG, Shen Z, Lakoduk A, Sasaki AT, Briggs SP, Firtel RA. PMID: 20493808; PMCID: PMC2893887.

View in: PubMed Mentions: 87 Fields:
Cel Cell Biology Emb Embryology
Translation:Humans Animals Cells
Involvement of the cytoskeleton in controlling leading-edge function during chemotaxis. Mol Biol Cell. 2010 Jun 01; 21(11):1810-24. Lee S, Shen Z, Robinson DN, Briggs S, Firtel RA. PMID: 20375144; PMCID: PMC2877640.

View in: PubMed Mentions: 31 Fields:
Cel Cell Biology Mol Molecular Biology
Translation:Animals Cells
Regulatory network of microRNAs in RAW 264.7 macrophage cells. Annu Int Conf IEEE Eng Med Biol Soc. 2010; 2010:6198-201. Garmire LX, Shen Z, Briggs S, Yeo G, Subramaniam S, Glass C. PMID: 21097158.

View in: PubMed Mentions: 2 Fields:
Bio Biomedical Engineering
Translation:Animals Cells
Application of proteomic marker ensembles to subcellular organelle identification. Mol Cell Proteomics. 2010 Feb; 9(2):388-402. Andreyev AY, Shen Z, Guan Z, Ryan A, Fahy E, Subramaniam S, Raetz CR, Briggs S, Dennis EA. PMID: 19884172; PMCID: PMC2830848.

View in: PubMed Mentions: 21 Fields:
Bio Biochemistry Cel Cell Biology Mol Molecular Biology
Translation:Animals Cells
Discovery and revision of Arabidopsis genes by proteogenomics. Proc Natl Acad Sci U S A. 2008 Dec 30; 105(52):21034-8. Castellana NE, Payne SH, Shen Z, Stanke M, Bafna V, Briggs SP. PMID: 19098097; PMCID: PMC2605632.

View in: PubMed Mentions: 125 Fields:
Sci Science
Translation:Animals
Dictyostelium Dock180-related RacGEFs regulate the actin cytoskeleton during cell motility. Mol Biol Cell. 2009 Jan; 20(2):699-707. Para A, Krischke M, Merlot S, Shen Z, Oberholzer M, Lee S, Briggs S, Firtel RA. PMID: 19037099; PMCID: PMC2626555.

View in: PubMed Mentions: 15 Fields:
Cel Cell Biology Mol Molecular Biology
Translation:Humans Animals Cells
Direct identification of the Meloidogyne incognita secretome reveals proteins with host cell reprogramming potential. PLoS Pathog. 2008 Oct; 4(10):e1000192. Bellafiore S, Shen Z, Rosso MN, Abad P, Shih P, Briggs SP. PMID: 18974830; PMCID: PMC2568823.

View in: PubMed Mentions: 86 Fields:
Mic Microbiology
Translation:Animals
Activation of the unfolded protein response is required for defenses against bacterial pore-forming toxin in vivo. PLoS Pathog. 2008 Oct; 4(10):e1000176. Bischof LJ, Kao CY, Los FC, Gonzalez MR, Shen Z, Briggs SP, van der Goot FG, Aroian RV. PMID: 18846208; PMCID: PMC2553261.

View in: PubMed Mentions: 112 Fields:
Mic Microbiology
Translation:Humans Animals Cells
Regulation of contractile vacuole formation and activity in Dictyostelium. EMBO J. 2008 Aug 06; 27(15):2064-76. Du F, Edwards K, Shen Z, Sun B, De Lozanne A, Briggs S, Firtel RA. PMID: 18636095; PMCID: PMC2516880.

View in: PubMed Mentions: 24 Fields:
Bio Biotechnology Mol Molecular Biology
Translation:Animals Cells
Clustering millions of tandem mass spectra. J Proteome Res. 2008 Jan; 7(1):113-22. Frank AM, Bandeira N, Shen Z, Tanner S, Briggs SP, Smith RD, Pevzner PA. PMID: 18067247; PMCID: PMC2533155.

View in: PubMed Mentions: 113 Fields:
Bio Biochemistry
Translation:Cells
Accurate annotation of peptide modifications through unrestrictive database search. J Proteome Res. 2008 Jan; 7(1):170-81. Tanner S, Payne SH, Dasari S, Shen Z, Wilmarth PA, David LL, Loomis WF, Briggs SP, Bafna V. PMID: 18034453.

View in: PubMed Mentions: 22 Fields:
Bio Biochemistry
Translation:Cells
Improving gene annotation using peptide mass spectrometry. Genome Res. 2007 Feb; 17(2):231-9. Tanner S, Shen Z, Ng J, Florea L, Guigó R, Briggs SP, Bafna V. PMID: 17189379; PMCID: PMC1781355.

View in: PubMed Mentions: 89 Fields:
Gen Genetics
Translation:Humans Cells
ELYS is a dual nucleoporin/kinetochore protein required for nuclear pore assembly and proper cell division. Proc Natl Acad Sci U S A. 2006 Nov 21; 103(47):17801-6. Rasala BA, Orjalo AV, Shen Z, Briggs S, Forbes DJ. PMID: 17098863; PMCID: PMC1635652.

View in: PubMed Mentions: 152 Fields:
Sci Science
Translation:Humans Animals Cells
The Nup107-160 nucleoporin complex is required for correct bipolar spindle assembly. Mol Biol Cell. 2006 Sep; 17(9):3806-18. Orjalo AV, Arnaoutov A, Shen Z, Boyarchuk Y, Zeitlin SG, Fontoura B, Briggs S, Dasso M, Forbes DJ. PMID: 16807356; PMCID: PMC1593160.

View in: PubMed Mentions: 90 Fields:
Cel Cell Biology Mol Molecular Biology
Translation:Humans Animals Cells
Use of high-throughput LC-MS/MS proteomics technologies in drug discovery. Drug Discov Today Technol. 2006; 3(3):301-6. Shen Z, Wang MW, Briggs SP. PMID: 24980532.

View in: PubMed Mentions: 1 Fields:
Dru Drug Therapy Pha Pharmacology