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Zhouxin Shen

Title(s)Assistant Professor, Division of Biological Science
SchoolVc-academic Affairs
Address9500 Gilman Drive #
La Jolla CA 92093
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Wnt5a induces ROR1 to recruit cortactin to promote breast-cancer migration and metastasis. NPJ Breast Cancer. 2019; 5:35. Hasan MK, Widhopf GF, Zhang S, Lam SM, Shen Z, Briggs SP, Parker BA, Kipps TJ. PMID: 31667337.
      View in: PubMed   Mentions:
    2. Multiple genes recruited from hormone pathways partition maize diterpenoid defences. Nat Plants. 2019 10; 5(10):1043-1056. Ding Y, Murphy KM, Poretsky E, Mafu S, Yang B, Char SN, Christensen SA, Saldivar E, Wu M, Wang Q, Ji L, Schmitz RJ, Kremling KA, Buckler ES, Shen Z, Briggs SP, Bohlmann J, Sher A, Castro-Falcon G, Hughes CC, Huffaker A, Zerbe P, Schmelz EA. PMID: 31527844.
      View in: PubMed   Mentions: 3     Fields:    Translation:Animals
    3. Magnesium Flux Modulates Ribosomes to Increase Bacterial Survival. Cell. 2019 04 04; 177(2):352-360.e13. Lee DD, Galera-Laporta L, Bialecka-Fornal M, Moon EC, Shen Z, Briggs SP, Garcia-Ojalvo J, Süel GM. PMID: 30853217.
      View in: PubMed   Mentions: 5     Fields:    Translation:Cells
    4. The Dictyostelium GSK3 kinase GlkA coordinates signal relay and chemotaxis in response to growth conditions. Dev Biol. 2018 03 01; 435(1):56-72. Lacal Romero J, Shen Z, Baumgardner K, Wei J, Briggs SP, Firtel RA. PMID: 29355521.
      View in: PubMed   Mentions: 1     Fields:    Translation:AnimalsCells
    5. Fungal-induced protein hyperacetylation in maize identified by acetylome profiling. Proc Natl Acad Sci U S A. 2018 01 02; 115(1):210-215. Walley JW, Shen Z, McReynolds MR, Schmelz EA, Briggs SP. PMID: 29259121.
      View in: PubMed   Mentions: 7     Fields:    Translation:AnimalsCells
    6. Integration of omic networks in a developmental atlas of maize. Science. 2016 Aug 19; 353(6301):814-8. Walley JW, Sartor RC, Shen Z, Schmitz RJ, Wu KJ, Urich MA, Nery JR, Smith LG, Schnable JC, Ecker JR, Briggs SP. PMID: 27540173.
      View in: PubMed   Mentions: 54     Fields:    Translation:AnimalsCells
    7. Proteomics studies of the interactome of RNA polymerase II C-terminal repeated domain. BMC Res Notes. 2015 Oct 29; 8:616. Pineda G, Shen Z, de Albuquerque CP, Reynoso E, Chen J, Tu CC, Tang W, Briggs S, Zhou H, Wang JY. PMID: 26515650.
      View in: PubMed   Mentions: 5     Fields:    Translation:HumansCells
    8. Plastid-produced interorgannellar stress signal MEcPP potentiates induction of the unfolded protein response in endoplasmic reticulum. Proc Natl Acad Sci U S A. 2015 May 12; 112(19):6212-7. Walley J, Xiao Y, Wang JZ, Baidoo EE, Keasling JD, Shen Z, Briggs SP, Dehesh K. PMID: 25922532.
      View in: PubMed   Mentions: 24     Fields:    Translation:AnimalsCells
    9. A high-resolution tissue-specific proteome and phosphoproteome atlas of maize primary roots reveals functional gradients along the root axes. Plant Physiol. 2015 May; 168(1):233-46. Marcon C, Malik WA, Walley JW, Shen Z, Paschold A, Smith LG, Piepho HP, Briggs SP, Hochholdinger F. PMID: 25780097.
      View in: PubMed   Mentions: 8     Fields:    Translation:AnimalsCells
    10. Stemness factor Sall4 is required for DNA damage response in embryonic stem cells. J Cell Biol. 2015 Mar 02; 208(5):513-20. Xiong J, Todorova D, Su NY, Kim J, Lee PJ, Shen Z, Briggs SP, Xu Y. PMID: 25733712.
      View in: PubMed   Mentions: 16     Fields:    Translation:AnimalsCells
    11. UV irradiation accelerates amyloid precursor protein (APP) processing and disrupts APP axonal transport. J Neurosci. 2014 Feb 26; 34(9):3320-39. Almenar-Queralt A, Falzone TL, Shen Z, Lillo C, Killian RL, Arreola AS, Niederst ED, Ng KS, Kim SN, Briggs SP, Williams DS, Goldstein LS. PMID: 24573290.
      View in: PubMed   Mentions: 5     Fields:    Translation:HumansAnimalsCells
    12. ROR1 can interact with TCL1 and enhance leukemogenesis in Eµ-TCL1 transgenic mice. Proc Natl Acad Sci U S A. 2014 Jan 14; 111(2):793-8. Widhopf GF, Cui B, Ghia EM, Chen L, Messer K, Shen Z, Briggs SP, Croce CM, Kipps TJ. PMID: 24379361.
      View in: PubMed   Mentions: 32     Fields:    Translation:HumansAnimalsCells
    13. Reconstruction of protein networks from an atlas of maize seed proteotypes. Proc Natl Acad Sci U S A. 2013 Dec 03; 110(49):E4808-17. Walley JW, Shen Z, Sartor R, Wu KJ, Osborn J, Smith LG, Briggs SP. PMID: 24248366.
      View in: PubMed   Mentions: 38     Fields:    Translation:AnimalsCells
    14. An automated proteogenomic method uses mass spectrometry to reveal novel genes in Zea mays. Mol Cell Proteomics. 2014 Jan; 13(1):157-67. Castellana NE, Shen Z, He Y, Walley JW, Cassidy CJ, Briggs SP, Bafna V. PMID: 24142994.
      View in: PubMed   Mentions: 20     Fields:    Translation:HumansAnimals
    15. Parallel proteomic and phosphoproteomic analyses of successive stages of maize leaf development. Plant Cell. 2013 Aug; 25(8):2798-812. Facette MR, Shen Z, Björnsdóttir FR, Briggs SP, Smith LG. PMID: 23933881.
      View in: PubMed   Mentions: 32     Fields:    Translation:AnimalsCells
    16. Identification of PAN2 by quantitative proteomics as a leucine-rich repeat-receptor-like kinase acting upstream of PAN1 to polarize cell division in maize. Plant Cell. 2012 Nov; 24(11):4577-89. Zhang X, Facette M, Humphries JA, Shen Z, Park Y, Sutimantanapi D, Sylvester AW, Briggs SP, Smith LG. PMID: 23175742.
      View in: PubMed   Mentions: 19     Fields:    Translation:AnimalsCells
    17. Daydreamer, a Ras effector and GSK-3 substrate, is important for directional sensing and cell motility. Mol Biol Cell. 2013 Jan; 24(2):100-14. Kölsch V, Shen Z, Lee S, Plak K, Lotfi P, Chang J, Charest PG, Romero JL, Jeon TJ, Kortholt A, Briggs SP, Firtel RA. PMID: 23135995.
      View in: PubMed   Mentions: 4     Fields:    Translation:AnimalsCells
    18. Robust expression and secretion of Xylanase1 in Chlamydomonas reinhardtii by fusion to a selection gene and processing with the FMDV 2A peptide. PLoS One. 2012; 7(8):e43349. Rasala BA, Lee PA, Shen Z, Briggs SP, Mendez M, Mayfield SP. PMID: 22937037.
      View in: PubMed   Mentions: 47     Fields:    Translation:AnimalsCells
    19. Heterologous expression of the C-terminal antigenic domain of the malaria vaccine candidate Pfs48/45 in the green algae Chlamydomonas reinhardtii. Appl Microbiol Biotechnol. 2013 Mar; 97(5):1987-95. Jones CS, Luong T, Hannon M, Tran M, Gregory JA, Shen Z, Briggs SP, Mayfield SP. PMID: 22592550.
      View in: PubMed   Mentions: 21     Fields:    Translation:AnimalsCells
    20. Accurate mass spectrometry based protein quantification via shared peptides. J Comput Biol. 2012 Apr; 19(4):337-48. Dost B, Bandeira N, Li X, Shen Z, Briggs SP, Bafna V. PMID: 22414154.
      View in: PubMed   Mentions: 16     Fields:    Translation:AnimalsCells
    21. Biochemical and phosphoproteomic analysis of the helix-loop-helix protein E47. Mol Cell Biol. 2012 May; 32(9):1671-82. Teachenor R, Beck K, Wright LY, Shen Z, Briggs SP, Murre C. PMID: 22354994.
      View in: PubMed   Mentions: 8     Fields:    Translation:HumansAnimalsCells
    22. The LRRK2-related Roco kinase Roco2 is regulated by Rab1A and controls the actin cytoskeleton. Mol Biol Cell. 2011 Jul 01; 22(13):2198-211. Kicka S, Shen Z, Annesley SJ, Fisher PR, Lee S, Briggs S, Firtel RA. PMID: 21551065.
      View in: PubMed   Mentions: 6     Fields:    Translation:AnimalsCells
    23. Regulation of STIM1 and SOCE by the ubiquitin-proteasome system (UPS). PLoS One. 2010 Oct 18; 5(10):e13465. Keil JM, Shen Z, Briggs SP, Patrick GN. PMID: 20976103.
      View in: PubMed   Mentions: 16     Fields:    Translation:HumansAnimalsCells
    24. Quantitative proteome analysis of pluripotent cells by iTRAQ mass tagging reveals post-transcriptional regulation of proteins required for ES cell self-renewal. Mol Cell Proteomics. 2010 Oct; 9(10):2238-51. O'Brien RN, Shen Z, Tachikawa K, Lee PA, Briggs SP. PMID: 20513800.
      View in: PubMed   Mentions: 22     Fields:    Translation:AnimalsCells
    25. A Ras signaling complex controls the RasC-TORC2 pathway and directed cell migration. Dev Cell. 2010 May 18; 18(5):737-49. Charest PG, Shen Z, Lakoduk A, Sasaki AT, Briggs SP, Firtel RA. PMID: 20493808.
      View in: PubMed   Mentions: 60     Fields:    Translation:HumansAnimalsCells
    26. Involvement of the cytoskeleton in controlling leading-edge function during chemotaxis. Mol Biol Cell. 2010 Jun 01; 21(11):1810-24. Lee S, Shen Z, Robinson DN, Briggs S, Firtel RA. PMID: 20375144.
      View in: PubMed   Mentions: 24     Fields:    Translation:AnimalsCells
    27. Regulatory network of microRNAs in RAW 264.7 macrophage cells. Annu Int Conf IEEE Eng Med Biol Soc. 2010; 2010:6198-201. Garmire LX, Shen Z, Briggs S, Yeo G, Subramaniam S, Glass C. PMID: 21097158.
      View in: PubMed   Mentions:
    28. Application of proteomic marker ensembles to subcellular organelle identification. Mol Cell Proteomics. 2010 Feb; 9(2):388-402. Andreyev AY, Shen Z, Guan Z, Ryan A, Fahy E, Subramaniam S, Raetz CR, Briggs S, Dennis EA. PMID: 19884172.
      View in: PubMed   Mentions: 17     Fields:    Translation:AnimalsCells
    29. Discovery and revision of Arabidopsis genes by proteogenomics. Proc Natl Acad Sci U S A. 2008 Dec 30; 105(52):21034-8. Castellana NE, Payne SH, Shen Z, Stanke M, Bafna V, Briggs SP. PMID: 19098097.
      View in: PubMed   Mentions: 108     Fields:    Translation:Animals
    30. Dictyostelium Dock180-related RacGEFs regulate the actin cytoskeleton during cell motility. Mol Biol Cell. 2009 Jan; 20(2):699-707. Para A, Krischke M, Merlot S, Shen Z, Oberholzer M, Lee S, Briggs S, Firtel RA. PMID: 19037099.
      View in: PubMed   Mentions: 12     Fields:    Translation:HumansAnimalsCells
    31. Direct identification of the Meloidogyne incognita secretome reveals proteins with host cell reprogramming potential. PLoS Pathog. 2008 Oct; 4(10):e1000192. Bellafiore S, Shen Z, Rosso MN, Abad P, Shih P, Briggs SP. PMID: 18974830.
      View in: PubMed   Mentions: 55     Fields:    Translation:Animals
    32. Activation of the unfolded protein response is required for defenses against bacterial pore-forming toxin in vivo. PLoS Pathog. 2008 Oct; 4(10):e1000176. Bischof LJ, Kao CY, Los FC, Gonzalez MR, Shen Z, Briggs SP, van der Goot FG, Aroian RV. PMID: 18846208.
      View in: PubMed   Mentions: 83     Fields:    Translation:HumansAnimalsCells
    33. Regulation of contractile vacuole formation and activity in Dictyostelium. EMBO J. 2008 Aug 06; 27(15):2064-76. Du F, Edwards K, Shen Z, Sun B, De Lozanne A, Briggs S, Firtel RA. PMID: 18636095.
      View in: PubMed   Mentions: 14     Fields:    Translation:AnimalsCells
    34. Clustering millions of tandem mass spectra. J Proteome Res. 2008 Jan; 7(1):113-22. Frank AM, Bandeira N, Shen Z, Tanner S, Briggs SP, Smith RD, Pevzner PA. PMID: 18067247.
      View in: PubMed   Mentions: 73     Fields:    Translation:Cells
    35. Accurate annotation of peptide modifications through unrestrictive database search. J Proteome Res. 2008 Jan; 7(1):170-81. Tanner S, Payne SH, Dasari S, Shen Z, Wilmarth PA, David LL, Loomis WF, Briggs SP, Bafna V. PMID: 18034453.
      View in: PubMed   Mentions: 20     Fields:    Translation:Cells
    36. Improving gene annotation using peptide mass spectrometry. Genome Res. 2007 Feb; 17(2):231-9. Tanner S, Shen Z, Ng J, Florea L, Guigó R, Briggs SP, Bafna V. PMID: 17189379.
      View in: PubMed   Mentions: 83     Fields:    Translation:HumansCells
    37. ELYS is a dual nucleoporin/kinetochore protein required for nuclear pore assembly and proper cell division. Proc Natl Acad Sci U S A. 2006 Nov 21; 103(47):17801-6. Rasala BA, Orjalo AV, Shen Z, Briggs S, Forbes DJ. PMID: 17098863.
      View in: PubMed   Mentions: 108     Fields:    Translation:HumansAnimalsCells
    38. The Nup107-160 nucleoporin complex is required for correct bipolar spindle assembly. Mol Biol Cell. 2006 Sep; 17(9):3806-18. Orjalo AV, Arnaoutov A, Shen Z, Boyarchuk Y, Zeitlin SG, Fontoura B, Briggs S, Dasso M, Forbes DJ. PMID: 16807356.
      View in: PubMed   Mentions: 81     Fields:    Translation:HumansAnimalsCells
    39. Use of high-throughput LC-MS/MS proteomics technologies in drug discovery. Drug Discov Today Technol. 2006; 3(3):301-6. Shen Z, Wang MW, Briggs SP. PMID: 24980532.
      View in: PubMed   Mentions: 1     Fields:    
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