Jack Gilbert

Title(s)Professor, Pediatrics
SchoolVc-health Sciences-schools
Address9500 Gilman Drive #0760
La Jolla CA 92093
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    1. Chemical composition of material extractives influences microbial growth and dynamics on wetted wood materials. Sci Rep. 2020 Sep 02; 10(1):14500. Zhao D, Cardona C, Gottel N, Winton VJ, Thomas PM, Raba DA, Kelley ST, Henry C, Gilbert JA, Stephens B. PMID: 32879425.
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    2. Draft Genome Sequence of 2-Methylpyridine-, 2-Ethylpyridine-, and 2-Hydroxypyridine-Degrading Arthrobacter sp. Strain ATCC 49987. Microbiol Resour Announc. 2020 Aug 20; 9(34). Gupta N, Skinner KA, Summers ZM, Edirisinghe JN, Faria JP, Marshall CW, Sharma A, Gottel NR, Gilbert JA, Henry CS, O'Loughlin EJ. PMID: 32816982.
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    3. Quantitative profiling of built environment bacterial and fungal communities reveals dynamic material dependent growth patterns and microbial interactions. Indoor Air. 2020 Aug 05. Xu Y, Tandon R, Ancheta C, Arroyo P, Gilbert JA, Stephens B, Kelley ST. PMID: 32757488.
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    4. Bacterial communities associated with cell phones and shoes. PeerJ. 2020; 8:e9235. Coil DA, Neches RY, Lang JM, Jospin G, Brown WE, Cavalier D, Hampton-Marcell J, Gilbert JA, Eisen JA. PMID: 32551196.
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    5. Spatial Compartmentalization of the Microbiome between the Lumen and Crypts Is Lost in the Murine Cecum following the Process of Surgery, Including Overnight Fasting and Exposure to Antibiotics. mSystems. 2020 Jun 09; 5(3). Zaborin A, Penalver Bernabe B, Keskey R, Sangwan N, Hyoju S, Gottel N, Gilbert JA, Zaborina O, Alverdy JC. PMID: 32518197.
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    6. Earth microbial co-occurrence network reveals interconnection pattern across microbiomes. Microbiome. 2020 Jun 04; 8(1):82. Ma B, Wang Y, Ye S, Liu S, Stirling E, Gilbert JA, Faust K, Knight R, Jansson JK, Cardona C, Röttjers L, Xu J. PMID: 32498714.
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    7. Detecting personal microbiota signatures at artificial crime scenes. Forensic Sci Int. 2020 Aug; 313:110351. Hampton-Marcell JT, Larsen P, Anton T, Cralle L, Sangwan N, Lax S, Gottel N, Salas-Garcia M, Young C, Duncan G, Lopez JV, Gilbert JA. PMID: 32559614.
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    8. Permissive microbiome characterizes human subjects with a neurovascular disease cavernous angioma. Nat Commun. 2020 05 27; 11(1):2659. Polster SP, Sharma A, Tanes C, Tang AT, Mericko P, Cao Y, Carrión-Penagos J, Girard R, Koskimäki J, Zhang D, Stadnik A, Romanos SG, Lyne SB, Shenkar R, Yan K, Lee C, Akers A, Morrison L, Robinson M, Zafar A, Bittinger K, Kim H, Gilbert JA, Kahn ML, Shen L, Awad IA. PMID: 32461638.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    9. Feasibility of SARS-CoV-2 virus detection from consumer-grade cotton swabs. medRxiv. 2020 May 18. Minich JJ, Ali F, Marotz C, Belda-Ferre P, Shaffer JP, Carpenter CS, McDonald D, Gilbert JA, Allard SM, Knight R, Sweeney DA, Swafford AD. PMID: 32511552.
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    10. Fecal microbiota transplant rescues mice from human pathogen mediated sepsis by restoring systemic immunity. Nat Commun. 2020 05 11; 11(1):2354. Kim SM, DeFazio JR, Hyoju SK, Sangani K, Keskey R, Krezalek MA, Khodarev NN, Sangwan N, Christley S, Harris KG, Malik A, Zaborin A, Bouziat R, Ranoa DR, Wiegerinck M, Ernest JD, Shakhsheer BA, Fleming ID, Weichselbaum RR, Antonopoulos DA, Gilbert JA, Barreiro LB, Zaborina O, Jabri B, Alverdy JC. PMID: 32393794.
      View in: PubMed   Mentions:    Fields:    Translation:HumansAnimalsCells
    11. Microbiome profile associated with malignant pleural effusion. PLoS One. 2020; 15(5):e0232181. Shojaee S, Sharma A, Gottel N, Sanchez T, Gilbert JA, Rahman NM. PMID: 32384089.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    12. Longitudinal survey of microbiome associated with particulate matter in a megacity. Genome Biol. 2020 03 03; 21(1):55. Qin N, Liang P, Wu C, Wang G, Xu Q, Xiong X, Wang T, Zolfo M, Segata N, Qin H, Knight R, Gilbert JA, Zhu TF. PMID: 32127018.
      View in: PubMed   Mentions: 1     Fields:    
    13. Precision medicine in perinatal depression in light of the human microbiome. Psychopharmacology (Berl). 2020 Apr; 237(4):915-941. Peñalver Bernabé B, Maki PM, Dowty SM, Salas M, Cralle L, Shah Z, Gilbert JA. PMID: 32065252.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    14. Microbiota composition modulates inflammation and neointimal hyperplasia after arterial angioplasty. J Vasc Surg. 2020 04; 71(4):1378-1389.e3. Cason CA, Kuntz TM, Chen EB, Wun K, Nooromid MJ, Xiong L, Gottel NR, Harris KG, Morton TC, Avram MJ, Chang EB, Gilbert JA, Ho KJ. PMID: 32035769.
      View in: PubMed   Mentions:    Fields:    Translation:Animals
    15. Comparative Analysis of Gut Microbiota Following Changes in Training Volume Among Swimmers. Int J Sports Med. 2020 May; 41(5):292-299. Hampton-Marcell JT, Eshoo TW, Cook MD, Gilbert JA, Horswill CA, Poretsky R. PMID: 31975357.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    16. Comparative Analyses of Vertebrate Gut Microbiomes Reveal Convergence between Birds and Bats. mBio. 2020 01 07; 11(1). Song SJ, Sanders JG, Delsuc F, Metcalf J, Amato K, Taylor MW, Mazel F, Lutz HL, Winker K, Graves GR, Humphrey G, Gilbert JA, Hackett SJ, White KP, Skeen HR, Kurtis SM, Withrow J, Braile T, Miller M, McCracken KG, Maley JM, Ezenwa VO, Williams A, Blanton JM, McKenzie VJ, Knight R. PMID: 31911491.
      View in: PubMed   Mentions: 7     Fields:    
    17. Acknowledgment of Ad Hoc Reviewers. mSystems. 2019 Dec 17; 4(6). Gilbert JA. PMID: 31848307.
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    18. Immune Dysregulation in the Tonsillar Microenvironment of Periodic Fever, Aphthous Stomatitis, Pharyngitis, Adenitis (PFAPA) Syndrome. J Clin Immunol. 2020 01; 40(1):179-190. Luu I, Sharma A, Guaderrama M, Peru M, Nation J, Page N, Carvalho D, Magit A, Jiang W, Leuin S, Bliss M, Bothwell M, Brigger M, Kearns D, Newbury R, Pransky S, Gilbert JA, Broderick L. PMID: 31807979.
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    19. The Future of Microbiome-Based Therapeutics in Clinical Applications. Clin Pharmacol Ther. 2020 01; 107(1):123-128. Sharma A, Das P, Buschmann M, Gilbert JA. PMID: 31617205.
      View in: PubMed   Mentions:    Fields:    Translation:HumansAnimals
    20. Ecology and Host Identity Outweigh Evolutionary History in Shaping the Bat Microbiome. mSystems. 2019 Nov 12; 4(6). Lutz HL, Jackson EW, Webala PW, Babyesiza WS, Kerbis Peterhans JC, Demos TC, Patterson BD, Gilbert JA. PMID: 31719140.
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    21. The Origin, Succession, and Predicted Metabolism of Bacterial Communities Associated with Leaf Decomposition. mBio. 2019 09 03; 10(5). Jackrel SL, Gilbert JA, Wootton JT. PMID: 31481384.
      View in: PubMed   Mentions:    Fields:    Translation:AnimalsCellsPHPublic Health
    22. Age and Mothers: Potent Influences of Children's Skin Microbiota. J Invest Dermatol. 2019 12; 139(12):2497-2505.e6. Zhu T, Liu X, Kong FQ, Duan YY, Yee AL, Kim M, Galzote C, Gilbert JA, Quan ZX. PMID: 31420081.
      View in: PubMed   Mentions: 2     Fields:    Translation:HumansCells
    23. Mice Fed an Obesogenic Western Diet, Administered Antibiotics, and Subjected to a Sterile Surgical Procedure Develop Lethal Septicemia with Multidrug-Resistant Pathobionts. mBio. 2019 07 30; 10(4). Hyoju SK, Zaborin A, Keskey R, Sharma A, Arnold W, van den Berg F, Kim SM, Gottel N, Bethel C, Charnot-Katsikas A, Jianxin P, Adriaansens C, Papazian E, Gilbert JA, Zaborina O, Alverdy JC. PMID: 31363025.
      View in: PubMed   Mentions: 3     Fields:    Translation:Animals
    24. Microbial Similarity between Students in a Common Dormitory Environment Reveals the Forensic Potential of Individual Microbial Signatures. mBio. 2019 07 30; 10(4). Richardson M, Gottel N, Gilbert JA, Lax S. PMID: 31363029.
      View in: PubMed   Mentions: 2     Fields:    Translation:Humans
    25. The human microbiota is associated with cardiometabolic risk across the epidemiologic transition. PLoS One. 2019; 14(7):e0215262. Fei N, Bernabé BP, Lie L, Baghdan D, Bedu-Addo K, Plange-Rhule J, Forrester TE, Lambert EV, Bovet P, Gottel N, Riesen W, Korte W, Luke A, Kliethermes SA, Layden BT, Gilbert JA, Dugas LR. PMID: 31339887.
      View in: PubMed   Mentions: 1     Fields:    Translation:Humans
    26. Associations between fungal and bacterial microbiota of airways and asthma endotypes. J Allergy Clin Immunol. 2019 11; 144(5):1214-1227.e7. Sharma A, Laxman B, Naureckas ET, Hogarth DK, Sperling AI, Solway J, Ober C, Gilbert JA, White SR. PMID: 31279011.
      View in: PubMed   Mentions: 5     Fields:    Translation:HumansAnimalsCells
    27. Quantifying and Understanding Well-to-Well Contamination in Microbiome Research. mSystems. 2019 Jun 25; 4(4). Minich JJ, Sanders JG, Amir A, Humphrey G, Gilbert JA, Knight R. PMID: 31239396.
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    28. Draft Genome Sequence of Rhodococcus sp. Strain ATCC 49988, a Quinoline-Degrading Bacterium. Microbiol Resour Announc. 2019 Jun 20; 8(25). Gupta N, Skinner KA, Summers ZM, Edirisinghe JN, Faria JP, Marshall CW, Sharma A, Gottel NR, Gilbert JA, Henry CS, O'Loughlin EJ. PMID: 31221646.
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    29. Concurrent measurement of microbiome and allergens in the air of bedrooms of allergy disease patients in the Chicago area. Microbiome. 2019 06 03; 7(1):82. Richardson M, Gottel N, Gilbert JA, Gordon J, Gandhi P, Reboulet R, Hampton-Marcell JT. PMID: 31159879.
      View in: PubMed   Mentions:    Fields:    Translation:HumansAnimalsCellsPHPublic Health
    30. Community ecology as a framework for human microbiome research. Nat Med. 2019 06; 25(6):884-889. Gilbert JA, Lynch SV. PMID: 31133693.
      View in: PubMed   Mentions: 5     Fields:    Translation:Humans
    31. Triplicate PCR reactions for 16S rRNA gene amplicon sequencing are unnecessary. Biotechniques. 2019 07; 67(1):29-32. Marotz C, Sharma A, Humphrey G, Gottel N, Daum C, Gilbert JA, Eloe-Fadrosh E, Knight R. PMID: 31124709.
      View in: PubMed   Mentions:    Fields:    Translation:Cells
    32. Sex-specific effects of microbiome perturbations on cerebral Aß amyloidosis and microglia phenotypes. J Exp Med. 2019 07 01; 216(7):1542-1560. Dodiya HB, Kuntz T, Shaik SM, Baufeld C, Leibowitz J, Zhang X, Gottel N, Zhang X, Butovsky O, Gilbert JA, Sisodia SS. PMID: 31097468.
      View in: PubMed   Mentions: 12     Fields:    Translation:AnimalsCells
    33. A Simple Microbiome in the European Common Cuttlefish, Sepia officinalis. mSystems. 2019 Jul-Aug; 4(4). Lutz HL, Ramírez-Puebla ST, Abbo L, Durand A, Schlundt C, Gottel NR, Sjaarda AK, Hanlon RT, Gilbert JA, Mark Welch JL. PMID: 31098396.
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    34. Impacts of indoor surface finishes on bacterial viability. Indoor Air. 2019 07; 29(4):551-562. Hu J, Ben Maamar S, Glawe AJ, Gottel N, Gilbert JA, Hartmann EM. PMID: 30980566.
      View in: PubMed   Mentions: 1     Fields:    Translation:CellsPHPublic Health
    35. Early-Career Scientists Shaping the World. mSystems. 2019 May 07; 4(3). Cristea IM, Dorrestein PC, Eisen JA, Gilbert JA, Huber JA, Jansson JK, Knight R, Pollard KS, Raes J, Silver PA, Webster NS, Xu J. PMID: 31219787.
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    36. Pharmacomicrobiomics: The Holy Grail to Variability in Drug Response? Clin Pharmacol Ther. 2019 08; 106(2):317-328. Sharma A, Buschmann MM, Gilbert JA. PMID: 30937887.
      View in: PubMed   Mentions: 5     Fields:    Translation:Humans
    37. Consent insufficient for data release-Response. Science. 2019 05 03; 364(6439):446. Amann RI, Baichoo S, Blencowe BJ, Bork P, Borodovsky M, Brooksbank C, Chain PSG, Colwell RR, Daffonchio DG, Danchin A, de Lorenzo V, Dorrestein PC, Finn RD, Fraser CM, Gilbert JA, Hallam SJ, Hugenholtz P, Ioannidis JPA, Jansson JK, Kim JF, Klenk HP, Klotz MG, Knight R, Konstantinidis KT, Kyrpides NC, Mason CE, McHardy AC, Meyer F, Ouzounis CA, Patrinos AAN, Podar M, Pollard KS, Ravel J, Muñoz AR, Roberts RJ, Rosselló-Móra R, Sansone SA, Schloss PD, Schriml LM, Setubal JC, Sorek R, Stevens RL, Tiedje JM, Turjanski A, Tyson GW, Ussery DW, Weinstock GM, White O, Whitman WB, Xenarios I. PMID: 31048484.
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    38. Longitudinal homogenization of the microbiome between both occupants and the built environment in a cohort of United States Air Force Cadets. Microbiome. 2019 05 02; 7(1):70. Sharma A, Richardson M, Cralle L, Stamper CE, Maestre JP, Stearns-Yoder KA, Postolache TT, Bates KL, Kinney KA, Brenner LA, Lowry CA, Gilbert JA, Hoisington AJ. PMID: 31046835.
      View in: PubMed   Mentions: 3     Fields:    Translation:HumansCellsPHPublic Health
    39. Microbial and metabolic succession on common building materials under high humidity conditions. Nat Commun. 2019 04 16; 10(1):1767. Lax S, Cardona C, Zhao D, Winton VJ, Goodney G, Gao P, Gottel N, Hartmann EM, Henry C, Thomas PM, Kelley ST, Stephens B, Gilbert JA. PMID: 30992445.
      View in: PubMed   Mentions: 2     Fields:    Translation:AnimalsCellsPHPublic Health
    40. Genomic Characterization and Virulence Potential of Two Fusarium oxysporum Isolates Cultured from the International Space Station. mSystems. 2019 Mar-Apr; 4(2). Urbaniak C, van Dam P, Zaborin A, Zaborina O, Gilbert JA, Torok T, Wang CCC, Venkateswaran K. PMID: 30944876.
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    41. Longitudinal Microbiome Composition and Stability Correlate with Increased Weight and Length of Very-Low-Birth-Weight Infants. mSystems. 2019 Jan-Feb; 4(1). Yee AL, Miller E, Dishaw LJ, Gordon JM, Ji M, Dutra S, Ho TTB, Gilbert JA, Groer M. PMID: 30834328.
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    42. Toward unrestricted use of public genomic data. Science. 2019 01 25; 363(6425):350-352. Amann RI, Baichoo S, Blencowe BJ, Bork P, Borodovsky M, Brooksbank C, Chain PSG, Colwell RR, Daffonchio DG, Danchin A, de Lorenzo V, Dorrestein PC, Finn RD, Fraser CM, Gilbert JA, Hallam SJ, Hugenholtz P, Ioannidis JPA, Jansson JK, Kim JF, Klenk HP, Klotz MG, Knight R, Konstantinidis KT, Kyrpides NC, Mason CE, McHardy AC, Meyer F, Ouzounis CA, Patrinos AAN, Podar M, Pollard KS, Ravel J, Muñoz AR, Roberts RJ, Rosselló-Móra R, Sansone SA, Schloss PD, Schriml LM, Setubal JC, Sorek R, Stevens RL, Tiedje JM, Turjanski A, Tyson GW, Ussery DW, Weinstock GM, White O, Whitman WB, Xenarios I. PMID: 30679363.
      View in: PubMed   Mentions: 4     Fields:    Translation:Humans
    43. Bacterial and Archaeal Viruses of Himalayan Hot Springs at Manikaran Modulate Host Genomes. Front Microbiol. 2018; 9:3095. Sharma A, Schmidt M, Kiesel B, Mahato NK, Cralle L, Singh Y, Richnow HH, Gilbert JA, Arnold W, Lal R. PMID: 30619174.
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    44. Enteric dysbiosis and fecal calprotectin expression in premature infants. Pediatr Res. 2019 02; 85(3):361-368. Ho TTB, Groer MW, Kane B, Yee AL, Torres BA, Gilbert JA, Maheshwari A. PMID: 30631136.
      View in: PubMed   Mentions: 2     Fields:    Translation:HumansCells
    45. GABA-modulating bacteria of the human gut microbiota. Nat Microbiol. 2019 03; 4(3):396-403. Strandwitz P, Kim KH, Terekhova D, Liu JK, Sharma A, Levering J, McDonald D, Dietrich D, Ramadhar TR, Lekbua A, Mroue N, Liston C, Stewart EJ, Dubin MJ, Zengler K, Knight R, Gilbert JA, Clardy J, Lewis K. PMID: 30531975.
      View in: PubMed   Mentions: 21     Fields:    Translation:HumansCells
    46. Gut microbial features can predict host phenotype response to protein deficiency. Physiol Rep. 2018 Dec; 6(23):e13932. Navarro G, Sharma A, Dugas LR, Forrester T, Gilbert JA, Layden BT. PMID: 30516001.
      View in: PubMed   Mentions:    Fields:    Translation:Animals
    47. Decreased microbial co-occurrence network stability and SCFA receptor level correlates with obesity in African-origin women. Sci Rep. 2018 11 20; 8(1):17135. Dugas LR, Bernabé BP, Priyadarshini M, Fei N, Park SJ, Brown L, Plange-Rhule J, Nelson D, Toh EC, Gao X, Dong Q, Sun J, Kliethermes S, Gottel N, Luke A, Gilbert JA, Layden BT. PMID: 30459320.
      View in: PubMed   Mentions: 1     Fields:    Translation:Humans
    48. Microbiology of the built environment. Nat Rev Microbiol. 2018 11; 16(11):661-670. Gilbert JA, Stephens B. PMID: 30127345.
      View in: PubMed   Mentions: 5     Fields:    Translation:HumansAnimalsCellsPHPublic Health
    49. Existing Climate Change Will Lead to Pronounced Shifts in the Diversity of Soil Prokaryotes. mSystems. 2018 Sep-Oct; 3(5). Ladau J, Shi Y, Jing X, He JS, Chen L, Lin X, Fierer N, Gilbert JA, Pollard KS, Chu H. PMID: 30374458.
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    50. The chemodiversity of paddy soil dissolved organic matter correlates with microbial community at continental scales. Microbiome. 2018 10 19; 6(1):187. Li HY, Wang H, Wang HT, Xin PY, Xu XH, Ma Y, Liu WP, Teng CY, Jiang CL, Lou LP, Arnold W, Cralle L, Zhu YG, Chu JF, Gilbert JA, Zhang ZJ. PMID: 30340631.
      View in: PubMed   Mentions: 1     Fields:    Translation:AnimalsCellsPHPublic Health
    51. Preserving microbial diversity. Science. 2018 Oct 05; 362(6410):33-34. Bello MGD, Knight R, Gilbert JA, Blaser MJ. PMID: 30287652.
      View in: PubMed   Mentions: 9     Fields:    Translation:Humans
    52. Dichotomous development of the gut microbiome in preterm infants. Microbiome. 2018 09 12; 6(1):157. Ho TTB, Groer MW, Kane B, Yee AL, Torres BA, Gilbert JA, Maheshwari A. PMID: 30208950.
      View in: PubMed   Mentions: 7     Fields:    Translation:HumansCells
    53. Microbial exposure and human health. Curr Opin Microbiol. 2018 08; 44:79-87. Sharma A, Gilbert JA. PMID: 30195150.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansAnimalsCells
    54. Gut microbiota composition and butyrate production in children affected by non-IgE-mediated cow's milk allergy. Sci Rep. 2018 08 21; 8(1):12500. Berni Canani R, De Filippis F, Nocerino R, Paparo L, Di Scala C, Cosenza L, Della Gatta G, Calignano A, De Caro C, Laiola M, Gilbert JA, Ercolini D. PMID: 30131575.
      View in: PubMed   Mentions: 5     Fields:    Translation:HumansAnimalsCells
    55. Gut microbiota, short chain fatty acids, and obesity across the epidemiologic transition: the METS-Microbiome study protocol. BMC Public Health. 2018 08 06; 18(1):978. Dugas LR, Lie L, Plange-Rhule J, Bedu-Addo K, Bovet P, Lambert EV, Forrester TE, Luke A, Gilbert JA, Layden BT. PMID: 30081857.
      View in: PubMed   Mentions: 2     Fields:    Translation:Humans
    56. Corrigendum: Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea. Nat Biotechnol. 2018 07 06; 36(7):660. Bowers RM, Kyrpides NC, Stepanauskas R, Harmon-Smith M, Doud D, Reddy TBK, Schulz F, Jarett J, Rivers AR, Eloe-Fadrosh EA, Tringe SG, Ivanova NN, Copeland A, Clum A, Becraft ED, Malmstrom RR, Birren B, Podar M, Bork P, Weinstock GM, Garrity GM, Dodsworth JA, Yooseph S, Sutton G, Glöckner FO, Gilbert JA, Nelson WC, Hallam SJ, Jungbluth SP, Ettema TJG, Tighe S, Konstantinidis KT, Liu WT, Baker BJ, Rattei T, Eisen JA, Hedlund B, McMahon KD, Fierer N, Knight R, Finn R, Cochrane G, Karsch-Mizrachi I, Tyson GW, Rinke C, Lapidus A, Meyer F, Yilmaz P, Parks DH, Eren AM, Schriml L, Banfield JF, Hugenholtz P, Woyke T. PMID: 29979671.
      View in: PubMed   Mentions: 1     Fields:    
    57. Metagenomic analysis of basal ice from an Alaskan glacier. Microbiome. 2018 07 05; 6(1):123. Kayani MUR, Doyle SM, Sangwan N, Wang G, Gilbert JA, Christner BC, Zhu TF. PMID: 29976249.
      View in: PubMed   Mentions: 2     Fields:    Translation:Cells
    58. Environmental Sources of Bacteria Differentially Influence Host-Associated Microbial Dynamics. mSystems. 2018 May-Jun; 3(3). Cardona C, Lax S, Larsen P, Stephens B, Hampton-Marcell J, Edwardson CF, Henry C, Van Bonn B, Gilbert JA. PMID: 29854953.
      View in: PubMed   Mentions:
    59. American Gut: an Open Platform for Citizen Science Microbiome Research. mSystems. 2018 May-Jun; 3(3). McDonald D, Hyde E, Debelius JW, Morton JT, Gonzalez A, Ackermann G, Aksenov AA, Behsaz B, Brennan C, Chen Y, DeRight Goldasich L, Dorrestein PC, Dunn RR, Fahimipour AK, Gaffney J, Gilbert JA, Gogul G, Green JL, Hugenholtz P, Humphrey G, Huttenhower C, Jackson MA, Janssen S, Jeste DV, Jiang L, Kelley ST, Knights D, Kosciolek T, Ladau J, Leach J, Marotz C, Meleshko D, Melnik AV, Metcalf JL, Mohimani H, Montassier E, Navas-Molina J, Nguyen TT, Peddada S, Pevzner P, Pollard KS, Rahnavard G, Robbins-Pianka A, Sangwan N, Shorenstein J, Smarr L, Song SJ, Spector T, Swafford AD, Thackray VG, Thompson LR, Tripathi A, Vázquez-Baeza Y, Vrbanac A, Wischmeyer P, Wolfe E, Zhu Q, Knight R. PMID: 29795809.
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    60. Soil Bacterial Diversity Is Associated with Human Population Density in Urban Greenspaces. Environ Sci Technol. 2018 05 01; 52(9):5115-5124. Wang H, Cheng M, Dsouza M, Weisenhorn P, Zheng T, Gilbert JA. PMID: 29624051.
      View in: PubMed   Mentions:    Fields:    Translation:HumansCellsPHPublic Health
    61. Earth Microbiome Project and Global Systems Biology. mSystems. 2018 May-Jun; 3(3). Gilbert JA, Jansson JK, Knight R. PMID: 29657969.
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    62. Current understanding of the human microbiome. Nat Med. 2018 04 10; 24(4):392-400. Gilbert JA, Blaser MJ, Caporaso JG, Jansson JK, Lynch SV, Knight R. PMID: 29634682.
      View in: PubMed   Mentions: 73     Fields:    Translation:Humans
    63. Early-Career Systems Microbiology Scientists. mSystems. 2018 Mar-Apr; 3(2). Gilbert JA. PMID: 29556547.
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    64. Correction: A microbial survey of the International Space Station (ISS). PeerJ. 2018; 5. Lang JM, Coil DA, Neches RY, Brown WE, Cavalier D, Severance M, Hampton-Marcell JT, Gilbert JA, Eisen JA. PMID: 29498380.
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    65. Systems biology of the human microbiome. Curr Opin Biotechnol. 2018 06; 51:146-153. Peñalver Bernabé B, Cralle L, Gilbert JA. PMID: 29453029.
      View in: PubMed   Mentions: 4     Fields:    Translation:HumansCells
    66. Corrigendum: Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea. Nat Biotechnol. 2018 02 06; 36(2):196. Bowers RM, Kyrpides NC, Stepanauskas R, Harmon-Smith M, Doud D, Reddy TBK, Schulz F, Jarett J, Rivers AR, Eloe-Fadrosh EA, Tringe SG, Ivanova NN, Copeland A, Clum A, Becraft ED, Malmstrom RR, Birren B, Podar M, Bork P, Weinstock GM, Garrity GM, Dodsworth JA, Yooseph S, Sutton G, Glöckner FO, Gilbert JA, Nelson WC, Hallam SJ, Jungbluth SP, Ettema TJG, Tighe S, Konstantinidis KT, Liu WT, Baker BJ, Rattei T, Eisen JA, Hedlund B, McMahon KD, Fierer N, Knight R, Finn R, Cochrane G, Karsch-Mizrachi I, Tyson GW, Rinke C, Lapidus A, Meyer F, Yilmaz P, Parks DH, Eren AM, Schriml L, Banfield JF, Hugenholtz P, Woyke T. PMID: 29406516.
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    67. A microbial survey of the International Space Station (ISS). PeerJ. 2017; 5:e4029. Lang JM, Coil DA, Neches RY, Brown WE, Cavalier D, Severance M, Hampton-Marcell JT, Gilbert JA, Eisen JA. PMID: 29492330.
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    68. A communal catalogue reveals Earth's multiscale microbial diversity. Nature. 2017 11 23; 551(7681):457-463. Thompson LR, Sanders JG, McDonald D, Amir A, Ladau J, Locey KJ, Prill RJ, Tripathi A, Gibbons SM, Ackermann G, Navas-Molina JA, Janssen S, Kopylova E, Vázquez-Baeza Y, González A, Morton JT, Mirarab S, Zech Xu Z, Jiang L, Haroon MF, Kanbar J, Zhu Q, Jin Song S, Kosciolek T, Bokulich NA, Lefler J, Brislawn CJ, Humphrey G, Owens SM, Hampton-Marcell J, Berg-Lyons D, McKenzie V, Fierer N, Fuhrman JA, Clauset A, Stevens RL, Shade A, Pollard KS, Goodwin KD, Jansson JK, Gilbert JA, Knight R. PMID: 29088705.
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    69. Microbial diversity in an intensively managed landscape is structured by landscape connectivity. FEMS Microbiol Ecol. 2017 10 01; 93(10). Griffin JS, Lu N, Sangwan N, Li A, Dsouza M, Stumpf AJ, Sevilla T, Culotti A, Keefer LL, Kelly JJ, Gilbert JA, Wells GF, Packman AI. PMID: 28961974.
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    70. Specific Signatures of the Gut Microbiota and Increased Levels of Butyrate in Children Treated with Fermented Cow's Milk Containing Heat-Killed Lactobacillus paracasei CBA L74. Appl Environ Microbiol. 2017 10 01; 83(19). Berni Canani R, De Filippis F, Nocerino R, Laiola M, Paparo L, Calignano A, De Caro C, Coretti L, Chiariotti L, Gilbert JA, Ercolini D. PMID: 28733284.
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    71. Metabolic Reconstruction and Modeling Microbial Electrosynthesis. Sci Rep. 2017 08 21; 7(1):8391. Marshall CW, Ross DE, Handley KM, Weisenhorn PB, Edirisinghe JN, Henry CS, Gilbert JA, May HD, Norman RS. PMID: 28827682.
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    72. Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea. Nat Biotechnol. 2017 Aug 08; 35(8):725-731. Bowers RM, Kyrpides NC, Stepanauskas R, Harmon-Smith M, Doud D, Reddy TBK, Schulz F, Jarett J, Rivers AR, Eloe-Fadrosh EA, Tringe SG, Ivanova NN, Copeland A, Clum A, Becraft ED, Malmstrom RR, Birren B, Podar M, Bork P, Weinstock GM, Garrity GM, Dodsworth JA, Yooseph S, Sutton G, Glöckner FO, Gilbert JA, Nelson WC, Hallam SJ, Jungbluth SP, Ettema TJG, Tighe S, Konstantinidis KT, Liu WT, Baker BJ, Rattei T, Eisen JA, Hedlund B, McMahon KD, Fierer N, Knight R, Finn R, Cochrane G, Karsch-Mizrachi I, Tyson GW, Rinke C, Lapidus A, Meyer F, Yilmaz P, Parks DH, Eren AM, Schriml L, Banfield JF, Hugenholtz P, Woyke T. PMID: 28787424.
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    73. Metabolic and spatio-taxonomic response of uncultivated seafloor bacteria following the Deepwater Horizon oil spill. ISME J. 2017 11; 11(11):2569-2583. Handley KM, Piceno YM, Hu P, Tom LM, Mason OU, Andersen GL, Jansson JK, Gilbert JA. PMID: 28777379.
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    74. Taxonomic and functional patterns across soil microbial communities of global biomes. Sci Total Environ. 2017 Dec 31; 609:1064-1074. Noronha MF, Lacerda Júnior GV, Gilbert JA, de Oliveira VM. PMID: 28787780.
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    75. Erratum for Linz et al., "Bacterial Community Composition and Dynamics Spanning Five Years in Freshwater Bog Lakes". mSphere. 2017 Jul-Aug; 2(4). Linz AM, Crary BC, Shade A, Owens S, Gilbert JA, Knight R, McMahon KD. PMID: 28744483.
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    76. Bacterial Community Composition and Dynamics Spanning Five Years in Freshwater Bog Lakes. mSphere. 2017 May-Jun; 2(3). Linz AM, Crary BC, Shade A, Owens S, Gilbert JA, Knight R, McMahon KD. PMID: 28680968.
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    77. Significant Impacts of Increasing Aridity on the Arid Soil Microbiome. mSystems. 2017 May-Jun; 2(3). Neilson JW, Califf K, Cardona C, Copeland A, van Treuren W, Josephson KL, Knight R, Gilbert JA, Quade J, Caporaso JG, Maier RM. PMID: 28593197.
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    78. Size, Composition, and Source Profiles of Inhalable Bioaerosols from Colorado Dairies. Environ Sci Technol. 2017 Jun 06; 51(11):6430-6440. Schaeffer JW, Reynolds S, Magzamen S, VanDyke A, Gottel NR, Gilbert JA, Owens SM, Hampton-Marcell JT, Volckens J. PMID: 28492313.
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    79. Bacterial colonization and succession in a newly opened hospital. Sci Transl Med. 2017 05 24; 9(391). Lax S, Sangwan N, Smith D, Larsen P, Handley KM, Richardson M, Guyton K, Krezalek M, Shogan BD, Defazio J, Flemming I, Shakhsheer B, Weber S, Landon E, Garcia-Houchins S, Siegel J, Alverdy J, Knight R, Stephens B, Gilbert JA. PMID: 28539477.
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    80. Comparative Genomic Analysis Reveals Habitat-Specific Genes and Regulatory Hubs within the Genus Novosphingobium. mSystems. 2017 May-Jun; 2(3). Kumar R, Verma H, Haider S, Bajaj A, Sood U, Ponnusamy K, Nagar S, Shakarad MN, Negi RK, Singh Y, Khurana JP, Gilbert JA, Lal R. PMID: 28567447.
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    81. Alpine soil carbon is vulnerable to rapid microbial decomposition under climate cooling. ISME J. 2017 09; 11(9):2102-2111. Wu L, Yang Y, Wang S, Yue H, Lin Q, Hu Y, He Z, Van Nostrand JD, Hale L, Li X, Gilbert JA, Zhou J. PMID: 28534876.
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    82. The Microbiome-Mitochondrion Connection: Common Ancestries, Common Mechanisms, Common Goals. mSystems. 2017 May-Jun; 2(3). Franco-Obregón A, Gilbert JA. PMID: 28497122.
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    83. Correction for Gonzalez et al., "Migraines Are Correlated with Higher Levels of Nitrate-, Nitrite-, and Nitric Oxide-Reducing Oral Microbes in the American Gut Project Cohort". mSystems. 2017 Mar-Apr; 2(2). Gonzalez A, Hyde E, Sangwan N, Gilbert JA, Viirre E, Knight R. PMID: 28428981.
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    84. Invasive Plants Rapidly Reshape Soil Properties in a Grassland Ecosystem. mSystems. 2017 Mar-Apr; 2(2). Gibbons SM, Lekberg Y, Mummey DL, Sangwan N, Ramsey PW, Gilbert JA. PMID: 28289729.
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    85. The human microbiome: an emerging tool in forensics. Microb Biotechnol. 2017 03; 10(2):228-230. Hampton-Marcell JT, Lopez JV, Gilbert JA. PMID: 28244273.
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    86. Distinct Biogeographic Patterns for Archaea, Bacteria, and Fungi along the Vegetation Gradient at the Continental Scale in Eastern China. mSystems. 2017 Jan-Feb; 2(1). Ma B, Dai Z, Wang H, Dsouza M, Liu X, He Y, Wu J, Rodrigues JL, Gilbert JA, Brookes PC, Xu J. PMID: 28191504.
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    87. Identifying the plant-associated microbiome across aquatic and terrestrial environments: the effects of amplification method on taxa discovery. Mol Ecol Resour. 2017 Sep; 17(5):931-942. Jackrel SL, Owens SM, Gilbert JA, Pfister CA. PMID: 27997751.
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    88. The microbiome as a source of new enterprises and job creation: Considering clinical faecal and synthetic microbiome transplants and therapeutic regulation. Microb Biotechnol. 2017 01; 10(1):4-5. van der Lelie D, Taghavi S, Henry C, Gilbert JA. PMID: 28052560.
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    89. Disturbance Regimes Predictably Alter Diversity in an Ecologically Complex Bacterial System. mBio. 2016 12 20; 7(6). Gibbons SM, Scholz M, Hutchison AL, Dinner AR, Gilbert JA, Coleman ML. PMID: 27999158.
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    90. Genome reduction in an abundant and ubiquitous soil bacterium 'Candidatus Udaeobacter copiosus'. Nat Microbiol. 2016 Oct 31; 2:16198. Brewer TE, Handley KM, Carini P, Gilbert JA, Fierer N. PMID: 27798560.
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    91. Migraines Are Correlated with Higher Levels of Nitrate-, Nitrite-, and Nitric Oxide-Reducing Oral Microbes in the American Gut Project Cohort. mSystems. 2016 Sep-Oct; 1(5). Gonzalez A, Hyde E, Sangwan N, Gilbert JA, Viirre E, Knight R. PMID: 27822557.
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    92. Fungal community composition in soils subjected to long-term chemical fertilization is most influenced by the type of organic matter. Environ Microbiol. 2016 12; 18(12):5137-5150. Sun R, Dsouza M, Gilbert JA, Guo X, Wang D, Guo Z, Ni Y, Chu H. PMID: 27581342.
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    93. Innate Immunity and Asthma Risk in Amish and Hutterite Farm Children. N Engl J Med. 2016 Aug 04; 375(5):411-421. Stein MM, Hrusch CL, Gozdz J, Igartua C, Pivniouk V, Murray SE, Ledford JG, Marques Dos Santos M, Anderson RL, Metwali N, Neilson JW, Maier RM, Gilbert JA, Holbreich M, Thorne PS, Martinez FD, von Mutius E, Vercelli D, Ober C, Sperling AI. PMID: 27518660.
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    94. The Oral and Skin Microbiomes of Captive Komodo Dragons Are Significantly Shared with Their Habitat. mSystems. 2016 Jul-Aug; 1(4). Hyde ER, Navas-Molina JA, Song SJ, Kueneman JG, Ackermann G, Cardona C, Humphrey G, Boyer D, Weaver T, Mendelson JR, McKenzie VJ, Gilbert JA, Knight R. PMID: 27822543.
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    95. The antibiotic resistome of swine manure is significantly altered by association with the Musca domestica larvae gut microbiome. ISME J. 2017 01; 11(1):100-111. Wang H, Sangwan N, Li HY, Su JQ, Oyang WY, Zhang ZJ, Gilbert JA, Zhu YG, Ping F, Zhang HL. PMID: 27458785.
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    96. Microbiome-wide association studies link dynamic microbial consortia to disease. Nature. 2016 07 07; 535(7610):94-103. Gilbert JA, Quinn RA, Debelius J, Xu ZZ, Morton J, Garg N, Jansson JK, Dorrestein PC, Knight R. PMID: 27383984.
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    97. Differential Functional Constraints Cause Strain-Level Endemism in Polynucleobacter Populations. mSystems. 2016 May-Jun; 1(3). Sangwan N, Zarraonaindia I, Hampton-Marcell JT, Ssegane H, Eshoo TW, Rijal G, Negri MC, Gilbert JA. PMID: 27822527.
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    98. (Meta)genomic insights into the pathogenome of Cellulosimicrobium cellulans. Sci Rep. 2016 05 06; 6:25527. Sharma A, Gilbert JA, Lal R. PMID: 27151933.
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    99. Network-based metabolic analysis and microbial community modeling. Curr Opin Microbiol. 2016 06; 31:124-131. Cardona C, Weisenhorn P, Henry C, Gilbert JA. PMID: 27060776.
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    100. Spatial scale drives patterns in soil bacterial diversity. Environ Microbiol. 2016 06; 18(6):2039-51. O'Brien SL, Gibbons SM, Owens SM, Hampton-Marcell J, Johnston ER, Jastrow JD, Gilbert JA, Meyer F, Antonopoulos DA. PMID: 26914164.
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    101. Recovering complete and draft population genomes from metagenome datasets. Microbiome. 2016 Mar 08; 4:8. Sangwan N, Xia F, Gilbert JA. PMID: 26951112.
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    102. Introducing the JMBE Themed Issue on Scientific Citizenship. J Microbiol Biol Educ. 2016 Mar; 17(1):1-2. Gilbert JA, Klyczek KK, Elliott SL. PMID: 27047578.
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    103. Metatranscriptomics reveals temperature-driven functional changes in microbiome impacting cheese maturation rate. Sci Rep. 2016 Feb 25; 6:21871. De Filippis F, Genovese A, Ferranti P, Gilbert JA, Ercolini D. PMID: 26911915.
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    104. Geographic patterns of co-occurrence network topological features for soil microbiota at continental scale in eastern China. ISME J. 2016 08; 10(8):1891-901. Ma B, Wang H, Dsouza M, Lou J, He Y, Dai Z, Brookes PC, Xu J, Gilbert JA. PMID: 26771927.
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    105. A simple novel device for air sampling by electrokinetic capture. Microbiome. 2015 Dec 27; 3:79. Gordon J, Gandhi P, Shekhawat G, Frazier A, Hampton-Marcell J, Gilbert JA. PMID: 26715467.
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    106. Tools for the Microbiome: Nano and Beyond. ACS Nano. 2016 Jan 26; 10(1):6-37. Biteen JS, Blainey PC, Cardon ZG, Chun M, Church GM, Dorrestein PC, Fraser SE, Gilbert JA, Jansson JK, Knight R, Miller JF, Ozcan A, Prather KA, Quake SR, Ruby EG, Silver PA, Taha S, van den Engh G, Weiss PS, Wong GC, Wright AT, Young TD. PMID: 26695070.
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    107. Improved Bacterial 16S rRNA Gene (V4 and V4-5) and Fungal Internal Transcribed Spacer Marker Gene Primers for Microbial Community Surveys. mSystems. 2016 Jan-Feb; 1(1). Walters W, Hyde ER, Berg-Lyons D, Ackermann G, Humphrey G, Parada A, Gilbert JA, Jansson JK, Caporaso JG, Fuhrman JA, Apprill A, Knight R. PMID: 27822518.
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    108. mSystems: Learning To Love Systems. mSystems. 2016 Jan-Feb; 1(1). Gilbert JA. PMID: 27822517.
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    109. A New N-Acyl Homoserine Lactone Synthase in an Uncultured Symbiont of the Red Sea Sponge Theonella swinhoei. Appl Environ Microbiol. 2016 02 15; 82(4):1274-1285. Britstein M, Devescovi G, Handley KM, Malik A, Haber M, Saurav K, Teta R, Costantino V, Burgsdorf I, Gilbert JA, Sher N, Venturi V, Steindler L. PMID: 26655754.
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    110. Microbial community assembly and metabolic function during mammalian corpse decomposition. Science. 2016 Jan 08; 351(6269):158-62. Metcalf JL, Xu ZZ, Weiss S, Lax S, Van Treuren W, Hyde ER, Song SJ, Amir A, Larsen P, Sangwan N, Haarmann D, Humphrey GC, Ackermann G, Thompson LR, Lauber C, Bibat A, Nicholas C, Gebert MJ, Petrosino JF, Reed SC, Gilbert JA, Lynne AM, Bucheli SR, Carter DO, Knight R. PMID: 26657285.
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    111. Corticosteroid therapy and airflow obstruction influence the bronchial microbiome, which is distinct from that of bronchoalveolar lavage in asthmatic airways. J Allergy Clin Immunol. 2016 05; 137(5):1398-1405.e3. Denner DR, Sangwan N, Becker JB, Hogarth DK, Oldham J, Castillo J, Sperling AI, Solway J, Naureckas ET, Gilbert JA, White SR. PMID: 26627545.
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    112. Microbial diversity--exploration of natural ecosystems and microbiomes. Curr Opin Genet Dev. 2015 Dec; 35:66-72. Gibbons SM, Gilbert JA. PMID: 26598941.
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    113. MICROBIOME. A unified initiative to harness Earth's microbiomes. Science. 2015 Oct 30; 350(6260):507-8. Alivisatos AP, Blaser MJ, Brodie EL, Chun M, Dangl JL, Donohue TJ, Dorrestein PC, Gilbert JA, Green JL, Jansson JK, Knight R, Maxon ME, McFall-Ngai MJ, Miller JF, Pollard KS, Ruby EG, Taha SA. PMID: 26511287.
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    114. Lactobacillus rhamnosus GG-supplemented formula expands butyrate-producing bacterial strains in food allergic infants. ISME J. 2016 Mar; 10(3):742-50. Berni Canani R, Sangwan N, Stefka AT, Nocerino R, Paparo L, Aitoro R, Calignano A, Khan AA, Gilbert JA, Nagler CR. PMID: 26394008.
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    115. The short-chain fatty acid receptor, FFA2, contributes to gestational glucose homeostasis. Am J Physiol Endocrinol Metab. 2015 Nov 15; 309(10):E840-51. Fuller M, Priyadarshini M, Gibbons SM, Angueira AR, Brodsky M, Hayes MG, Kovatcheva-Datchary P, Bäckhed F, Gilbert JA, Lowe WL, Layden BT. PMID: 26394664.
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    116. 16Stimator: statistical estimation of ribosomal gene copy numbers from draft genome assemblies. ISME J. 2016 Apr; 10(4):1020-4. Perisin M, Vetter M, Gilbert JA, Bergelson J. PMID: 26359911.
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    117. Housefly Larva Vermicomposting Efficiently Attenuates Antibiotic Resistance Genes in Swine Manure, with Concomitant Bacterial Population Changes. Appl Environ Microbiol. 2015 Nov; 81(22):7668-79. Wang H, Li H, Gilbert JA, Li H, Wu L, Liu M, Wang L, Zhou Q, Yuan J, Zhang Z. PMID: 26296728.
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    118. Stool consistency as a major confounding factor affecting microbiota composition: an ignored variable? Gut. 2016 Jan; 65(1):1-2. Gilbert JA, Alverdy J. PMID: 26187505.
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    119. Arsenic rich Himalayan hot spring metagenomics reveal genetically novel predator-prey genotypes. Environ Microbiol Rep. 2015 Dec; 7(6):812-23. Sangwan N, Lambert C, Sharma A, Gupta V, Khurana P, Khurana JP, Sockett RE, Gilbert JA, Lal R. PMID: 25953741.
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    120. Athletic equipment microbiota are shaped by interactions with human skin. Microbiome. 2015; 3:25. Wood M, Gibbons SM, Lax S, Eshoo-Anton TW, Owens SM, Kennedy S, Gilbert JA, Hampton-Marcell JT. PMID: 26113975.
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    121. The ocean sampling day consortium. Gigascience. 2015; 4:27. Kopf A, Bicak M, Kottmann R, Schnetzer J, Kostadinov I, Lehmann K, Fernandez-Guerra A, Jeanthon C, Rahav E, Ullrich M, Wichels A, Gerdts G, Polymenakou P, Kotoulas G, Siam R, Abdallah RZ, Sonnenschein EC, Cariou T, O'Gara F, Jackson S, Orlic S, Steinke M, Busch J, Duarte B, Caçador I, Canning-Clode J, Bobrova O, Marteinsson V, Reynisson E, Loureiro CM, Luna GM, Quero GM, Löscher CR, Kremp A, DeLorenzo ME, Øvreås L, Tolman J, LaRoche J, Penna A, Frischer M, Davis T, Katherine B, Meyer CP, Ramos S, Magalhães C, Jude-Lemeilleur F, Aguirre-Macedo ML, Wang S, Poulton N, Jones S, Collin R, Fuhrman JA, Conan P, Alonso C, Stambler N, Goodwin K, Yakimov MM, Baltar F, Bodrossy L, Van De Kamp J, Frampton DM, Ostrowski M, Van Ruth P, Malthouse P, Claus S, Deneudt K, Mortelmans J, Pitois S, Wallom D, Salter I, Costa R, Schroeder DC, Kandil MM, Amaral V, Biancalana F, Santana R, Pedrotti ML, Yoshida T, Ogata H, Ingleton T, Munnik K, Rodriguez-Ezpeleta N, Berteaux-Lecellier V, Wecker P, Cancio I, Vaulot D, Bienhold C, Ghazal H, Chaouni B, Essayeh S, Ettamimi S, Zaid el H, Boukhatem N, Bouali A, Chahboune R, Barrijal S, Timinouni M, El Otmani F, Bennani M, Mea M, Todorova N, Karamfilov V, Ten Hoopen P, Cochrane G, L'Haridon S, Bizsel KC, Vezzi A, Lauro FM, Martin P, Jensen RM, Hinks J, Gebbels S, Rosselli R, De Pascale F, Schiavon R, Dos Santos A, Villar E, Pesant S, Cataletto B, Malfatti F, Edirisinghe R, Silveira JA, Barbier M, Turk V, Tinta T, Fuller WJ, Salihoglu I, Serakinci N, Ergoren MC, Bresnan E, Iriberri J, Nyhus PA, Bente E, Karlsen HE, Golyshin PN, Gasol JM, Moncheva S, Dzhembekova N, Johnson Z, Sinigalliano CD, Gidley ML, Zingone A, Danovaro R, Tsiamis G, Clark MS, Costa AC, El Bour M, Martins AM, Collins RE, Ducluzeau AL, Martinez J, Costello MJ, Amaral-Zettler LA, Gilbert JA, Davies N, Field D, Glöckner FO. PMID: 26097697.
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    122. Lifestyle evolution in cyanobacterial symbionts of sponges. mBio. 2015 Jun 02; 6(3):e00391-15. Burgsdorf I, Slaby BM, Handley KM, Haber M, Blom J, Marshall CW, Gilbert JA, Hentschel U, Steindler L. PMID: 26037118.
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    123. The role of the commensal microbiota in the regulation of tolerance to dietary allergens. Curr Opin Allergy Clin Immunol. 2015 Jun; 15(3):243-9. Berni Canani R, Gilbert JA, Nagler CR. PMID: 25827065.
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    124. Our unique microbial identity. Genome Biol. 2015 May 14; 16:97. Gilbert JA. PMID: 25971745.
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    125. Forensic analysis of the microbiome of phones and shoes. Microbiome. 2015; 3:21. Lax S, Hampton-Marcell JT, Gibbons SM, Colares GB, Smith D, Eisen JA, Gilbert JA. PMID: 25969737.
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    126. Understanding grapevine-microbiome interactions: implications for viticulture industry. Microb Cell. 2015 May 04; 2(5):171-173. Zarraonaindia I, Gilbert JA. PMID: 28357290.
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    127. Hospital-associated microbiota and implications for nosocomial infections. Trends Mol Med. 2015 Jul; 21(7):427-32. Lax S, Gilbert JA. PMID: 25907678.
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    128. Effects of diurnal variation of gut microbes and high-fat feeding on host circadian clock function and metabolism. Cell Host Microbe. 2015 May 13; 17(5):681-9. Leone V, Gibbons SM, Martinez K, Hutchison AL, Huang EY, Cham CM, Pierre JF, Heneghan AF, Nadimpalli A, Hubert N, Zale E, Wang Y, Huang Y, Theriault B, Dinner AR, Musch MW, Kudsk KA, Prendergast BJ, Gilbert JA, Chang EB. PMID: 25891358.
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    129. Social behavior and the microbiome. Elife. 2015 Mar 31; 4. Gilbert JA. PMID: 25826451.
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    130. The soil microbiome influences grapevine-associated microbiota. mBio. 2015 Mar 24; 6(2). Zarraonaindia I, Owens SM, Weisenhorn P, West K, Hampton-Marcell J, Lax S, Bokulich NA, Mills DA, Martin G, Taghavi S, van der Lelie D, Gilbert JA. PMID: 25805735.
      View in: PubMed   Mentions: 91     Fields:    Translation:AnimalsCellsPHPublic Health
    131. Towards large-cohort comparative studies to define the factors influencing the gut microbial community structure of ASD patients. Microb Ecol Health Dis. 2015; 26:26555. McDonald D, Hornig M, Lozupone C, Debelius J, Gilbert JA, Knight R. PMID: 25758371.
      View in: PubMed   Mentions:
    132. Our interface with the built environment: immunity and the indoor microbiota. Trends Immunol. 2015 Mar; 36(3):121-3. Lax S, Nagler CR, Gilbert JA. PMID: 25754179.
      View in: PubMed   Mentions: 14     Fields:    Translation:Humans
    133. The microbe-mediated mechanisms affecting topsoil carbon stock in Tibetan grasslands. ISME J. 2015 Sep; 9(9):2012-20. Yue H, Wang M, Wang S, Gilbert JA, Sun X, Wu L, Lin Q, Hu Y, Li X, He Z, Zhou J, Yang Y. PMID: 25689025.
      View in: PubMed   Mentions: 14     Fields:    Translation:AnimalsCellsPHPublic Health
    134. Temporal patterns of rarity provide a more complete view of microbial diversity. Trends Microbiol. 2015 Jun; 23(6):335-40. Shade A, Gilbert JA. PMID: 25667105.
      View in: PubMed   Mentions: 25     Fields:    
    135. Predicting ecosystem emergent properties at multiple scales. Environ Microbiol Rep. 2015 Feb; 7(1):20-2. Gilbert JA, Henry C. PMID: 25721595.
      View in: PubMed   Mentions: 1     Fields:    Translation:PHPublic Health
    136. Life in a World without Microbes. PLoS Biol. 2014 Dec; 12(12):e1002020. Gilbert JA, Neufeld JD. PMID: 25513890.
      View in: PubMed   Mentions: 14     Fields:    Translation:HumansAnimalsCells
    137. Whole-grain wheat consumption reduces inflammation in a randomized controlled trial on overweight and obese subjects with unhealthy dietary and lifestyle behaviors: role of polyphenols bound to cereal dietary fiber. Am J Clin Nutr. 2015 Feb; 101(2):251-61. Vitaglione P, Mennella I, Ferracane R, Rivellese AA, Giacco R, Ercolini D, Gibbons SM, La Storia A, Gilbert JA, Jonnalagadda S, Thielecke F, Gallo MA, Scalfi L, Fogliano V. PMID: 25646321.
      View in: PubMed   Mentions: 32     Fields:    Translation:HumansAnimals
    138. Comparative genomic analysis of nine Sphingobium strains: insights into their evolution and hexachlorocyclohexane (HCH) degradation pathways. BMC Genomics. 2014 Nov 23; 15:1014. Verma H, Kumar R, Oldach P, Sangwan N, Khurana JP, Gilbert JA, Lal R. PMID: 25418849.
      View in: PubMed   Mentions: 16     Fields:    Translation:Cells
    139. Ecological succession and viability of human-associated microbiota on restroom surfaces. Appl Environ Microbiol. 2015 Jan; 81(2):765-73. Gibbons SM, Schwartz T, Fouquier J, Mitchell M, Sangwan N, Gilbert JA, Kelley ST. PMID: 25398865.
      View in: PubMed   Mentions: 29     Fields:    Translation:HumansCellsPHPublic Health
    140. The role of macrobiota in structuring microbial communities along rocky shores. PeerJ. 2014; 2:e631. Pfister CA, Gilbert JA, Gibbons SM. PMID: 25337459.
      View in: PubMed   Mentions:
    141. Development of the preterm infant gut microbiome: a research priority. Microbiome. 2014; 2:38. Groer MW, Luciano AA, Dishaw LJ, Ashmeade TL, Miller E, Gilbert JA. PMID: 25332768.
      View in: PubMed   Mentions: 59     Fields:    
    142. DNA extraction protocols cause differences in 16S rRNA amplicon sequencing efficiency but not in community profile composition or structure. Microbiologyopen. 2014 Dec; 3(6):910-21. Rubin BE, Sanders JG, Hampton-Marcell J, Owens SM, Gilbert JA, Moreau CS. PMID: 25257543.
      View in: PubMed   Mentions: 23     Fields:    Translation:AnimalsCells
    143. Membership and behavior of ultra-low-diversity pathogen communities present in the gut of humans during prolonged critical illness. mBio. 2014 Sep 23; 5(5):e01361-14. Zaborin A, Smith D, Garfield K, Quensen J, Shakhsheer B, Kade M, Tirrell M, Tiedje J, Gilbert JA, Zaborina O, Alverdy JC. PMID: 25249279.
      View in: PubMed   Mentions: 83     Fields:    Translation:HumansAnimalsCells
    144. Intestinal anastomotic injury alters spatially defined microbiome composition and function. Microbiome. 2014; 2:35. Shogan BD, Smith DP, Christley S, Gilbert JA, Zaborina O, Alverdy JC. PMID: 25250176.
      View in: PubMed   Mentions: 34     Fields:    
    145. Longitudinal analysis of microbial interaction between humans and the indoor environment. Science. 2014 Aug 29; 345(6200):1048-52. Lax S, Smith DP, Hampton-Marcell J, Owens SM, Handley KM, Scott NM, Gibbons SM, Larsen P, Shogan BD, Weiss S, Metcalf JL, Ursell LK, Vázquez-Baeza Y, Van Treuren W, Hasan NA, Gibson MK, Colwell R, Dantas G, Knight R, Gilbert JA. PMID: 25170151.
      View in: PubMed   Mentions: 193     Fields:    Translation:HumansAnimalsCells
    146. The Earth Microbiome project: successes and aspirations. BMC Biol. 2014 Aug 22; 12:69. Gilbert JA, Jansson JK, Knight R. PMID: 25184604.
      View in: PubMed   Mentions: 140     Fields:    Translation:Cells
    147. Subsampled open-reference clustering creates consistent, comprehensive OTU definitions and scales to billions of sequences. PeerJ. 2014; 2:e545. Rideout JR, He Y, Navas-Molina JA, Walters WA, Ursell LK, Gibbons SM, Chase J, McDonald D, Gonzalez A, Robbins-Pianka A, Clemente JC, Gilbert JA, Huse SM, Zhou HW, Knight R, Caporaso JG. PMID: 25177538.
      View in: PubMed   Mentions:
    148. Satellite remote sensing data can be used to model marine microbial metabolite turnover. ISME J. 2015 Jan; 9(1):166-79. Larsen PE, Scott N, Post AF, Field D, Knight R, Hamada Y, Gilbert JA. PMID: 25072414.
      View in: PubMed   Mentions: 3     Fields:    Translation:HumansCellsPHPublic Health
    149. Conditionally rare taxa disproportionately contribute to temporal changes in microbial diversity. mBio. 2014 Jul 15; 5(4):e01371-14. Shade A, Jones SE, Caporaso JG, Handelsman J, Knight R, Fierer N, Gilbert JA. PMID: 25028427.
      View in: PubMed   Mentions: 88     Fields:    Translation:Cells
    150. Communities of microbial eukaryotes in the mammalian gut within the context of environmental eukaryotic diversity. Front Microbiol. 2014; 5:298. Parfrey LW, Walters WA, Lauber CL, Clemente JC, Berg-Lyons D, Teiling C, Kodira C, Mohiuddin M, Brunelle J, Driscoll M, Fierer N, Gilbert JA, Knight R. PMID: 24995004.
      View in: PubMed   Mentions:
    151. Understanding cultivar-specificity and soil determinants of the cannabis microbiome. PLoS One. 2014; 9(6):e99641. Winston ME, Hampton-Marcell J, Zarraonaindia I, Owens SM, Moreau CS, Gilbert JA, Hartsel JA, Hartsel J, Kennedy SJ, Gibbons SM. PMID: 24932479.
      View in: PubMed   Mentions: 6     Fields:    Translation:AnimalsCellsPHPublic Health
    152. Human and environmental impacts on river sediment microbial communities. PLoS One. 2014; 9(5):e97435. Gibbons SM, Jones E, Bearquiver A, Blackwolf F, Roundstone W, Scott N, Hooker J, Madsen R, Coleman ML, Gilbert JA. PMID: 24841417.
      View in: PubMed   Mentions: 20     Fields:    Translation:Humans
    153. The complete genome sequence for putative H2- and S-oxidizer Candidatus Sulfuricurvum sp., assembled de novo from an aquifer-derived metagenome. Environ Microbiol. 2014 Nov; 16(11):3443-62. Handley KM, Bartels D, O'Loughlin EJ, Williams KH, Trimble WL, Skinner K, Gilbert JA, Desai N, Glass EM, Paczian T, Wilke A, Antonopoulos D, Kemner KM, Meyer F. PMID: 24628880.
      View in: PubMed   Mentions: 15     Fields:    Translation:Cells
    154. Disturbed subsurface microbial communities follow equivalent trajectories despite different structural starting points. Environ Microbiol. 2015 Mar; 17(3):622-36. Handley KM, Wrighton KC, Miller CS, Wilkins MJ, Kantor RS, Thomas BC, Williams KH, Gilbert JA, Long PE, Banfield JF. PMID: 24674078.
      View in: PubMed   Mentions: 10     Fields:    Translation:CellsPHPublic Health
    155. The gut of geographically disparate Ciona intestinalis harbors a core microbiota. PLoS One. 2014; 9(4):e93386. Dishaw LJ, Flores-Torres J, Lax S, Gemayel K, Leigh B, Melillo D, Mueller MG, Natale L, Zucchetti I, De Santis R, Pinto MR, Litman GW, Gilbert JA. PMID: 24695540.
      View in: PubMed   Mentions: 31     Fields:    Translation:AnimalsCells
    156. The microbial nitrogen cycling potential is impacted by polyaromatic hydrocarbon pollution of marine sediments. Front Microbiol. 2014; 5:108. Scott NM, Hess M, Bouskill NJ, Mason OU, Jansson JK, Gilbert JA. PMID: 24723913.
      View in: PubMed   Mentions:
    157. Meeting report: Ocean 'omics science, technology and cyberinfrastructure: current challenges and future requirements (August 20-23, 2013). Stand Genomic Sci. 2014 Jun 15; 9(3):1252-8. Gilbert JA, Dick GJ, Jenkins B, Heidelberg J, Allen E, Mackey KR, DeLong EF. PMID: 25197495.
      View in: PubMed   Mentions:
    158. Characterizing changes in soil bacterial community structure in response to short-term warming. FEMS Microbiol Ecol. 2014 Aug; 89(2):281-92. Xiong J, Sun H, Peng F, Zhang H, Xue X, Gibbons SM, Gilbert JA, Chu H. PMID: 24476229.
      View in: PubMed   Mentions: 13     Fields:    Translation:AnimalsCellsPHPublic Health
    159. Genomic standards consortium projects. Stand Genomic Sci. 2014 Jun 15; 9(3):599-601. Field D, Sterk P, Kottmann R, De Smet JW, Amaral-Zettler L, Cochrane G, Cole JR, Davies N, Dawyndt P, Garrity GM, Gilbert JA, Glöckner FO, Hirschman L, Klenk HP, Knight R, Kyrpides N, Meyer F, Karsch-Mizrachi I, Morrison N, Robbins R, San Gil I, Sansone S, Schriml L, Tatusova T, Ussery D, Yilmaz P, White O, Wooley J, Caporaso G. PMID: 25197446.
      View in: PubMed   Mentions:
    160. Metagenomics reveals sediment microbial community response to Deepwater Horizon oil spill. ISME J. 2014 Jul; 8(7):1464-75. Mason OU, Scott NM, Gonzalez A, Robbins-Pianka A, Bælum J, Kimbrel J, Bouskill NJ, Prestat E, Borglin S, Joyner DC, Fortney JL, Jurelevicius D, Stringfellow WT, Alvarez-Cohen L, Hazen TC, Knight R, Gilbert JA, Jansson JK. PMID: 24451203.
      View in: PubMed   Mentions: 63     Fields:    Translation:CellsPHPublic Health
    161. Saliva from obese individuals suppresses the release of aroma compounds from wine. PLoS One. 2014; 9(1):e85611. Piombino P, Genovese A, Esposito S, Moio L, Cutolo PP, Chambery A, Severino V, Moneta E, Smith DP, Owens SM, Gilbert JA, Ercolini D. PMID: 24465618.
      View in: PubMed   Mentions: 20     Fields:    Translation:HumansCells
    162. Metagenomic analysis of microbial consortium from natural crude oil that seeps into the marine ecosystem offshore Southern California. Stand Genomic Sci. 2014 Jun 15; 9(3):1259-74. Hawley ER, Piao H, Scott NM, Malfatti S, Pagani I, Huntemann M, Chen A, Glavina Del Rio T, Foster B, Copeland A, Jansson J, Pati A, Tringe S, Gilbert JA, Lorenson TD, Hess M. PMID: 25197496.
      View in: PubMed   Mentions:
    163. Toward effective probiotics for autism and other neurodevelopmental disorders. Cell. 2013 Dec 19; 155(7):1446-8. Gilbert JA, Krajmalnik-Brown R, Porazinska DL, Weiss SJ, Knight R. PMID: 24360269.
      View in: PubMed   Mentions: 29     Fields:    Translation:HumansAnimals
    164. Impacts of bioturbation on temporal variation in bacterial and archaeal nitrogen-cycling gene abundance in coastal sediments. Environ Microbiol Rep. 2014 Feb; 6(1):113-21. Laverock B, Tait K, Gilbert JA, Osborn AM, Widdicombe S. PMID: 24596269.
      View in: PubMed   Mentions: 9     Fields:    Translation:AnimalsCells
    165. Reconstructing the microbial diversity and function of pre-agricultural tallgrass prairie soils in the United States. Science. 2013 Nov 01; 342(6158):621-4. Fierer N, Ladau J, Clemente JC, Leff JW, Owens SM, Pollard KS, Knight R, Gilbert JA, McCulley RL. PMID: 24179225.
      View in: PubMed   Mentions: 79     Fields:    Translation:AnimalsCellsPHPublic Health
    166. Reconstructing an ancestral genotype of two hexachlorocyclohexane-degrading Sphingobium species using metagenomic sequence data. ISME J. 2014 Feb; 8(2):398-408. Sangwan N, Verma H, Kumar R, Negi V, Lax S, Khurana P, Khurana JP, Gilbert JA, Lal R. PMID: 24030592.
      View in: PubMed   Mentions: 21     Fields:    Translation:CellsPHPublic Health
    167. Bioturbation determines the response of benthic ammonia-oxidizing microorganisms to ocean acidification. Philos Trans R Soc Lond B Biol Sci. 2013; 368(1627):20120441. Laverock B, Kitidis V, Tait K, Gilbert JA, Osborn AM, Widdicombe S. PMID: 23980243.
      View in: PubMed   Mentions: 12     Fields:    Translation:AnimalsCells
    168. Adenomatous polyps are driven by microbe-instigated focal inflammation and are controlled by IL-10-producing T cells. Cancer Res. 2013 Oct 01; 73(19):5905-13. Dennis KL, Wang Y, Blatner NR, Wang S, Saadalla A, Trudeau E, Roers A, Weaver CT, Lee JJ, Gilbert JA, Chang EB, Khazaie K. PMID: 23955389.
      View in: PubMed   Mentions: 55     Fields:    Translation:AnimalsCells
    169. Investigating the impact of storage conditions on microbial community composition in soil samples. PLoS One. 2013; 8(7):e70460. Rubin BE, Gibbons SM, Kennedy S, Hampton-Marcell J, Owens S, Gilbert JA. PMID: 23936206.
      View in: PubMed   Mentions: 21     Fields:    Translation:CellsPHPublic Health
    170. Metagenome sequencing of prokaryotic microbiota collected from Byron Glacier, Alaska. Genome Announc. 2013 Mar 21; 1(2):e0009913. Choudhari S, Smith S, Owens S, Gilbert JA, Shain DH, Dial RJ, Grigoriev A. PMID: 23516217.
      View in: PubMed   Mentions:
    171. Evidence for a persistent microbial seed bank throughout the global ocean. Proc Natl Acad Sci U S A. 2013 Mar 19; 110(12):4651-5. Gibbons SM, Caporaso JG, Pirrung M, Field D, Knight R, Gilbert JA. PMID: 23487761.
      View in: PubMed   Mentions: 62     Fields:    Translation:CellsPHPublic Health
    172. Studying the microbiology of the indoor environment. Genome Biol. 2013 Feb 28; 14(2):202. Kelley ST, Gilbert JA. PMID: 23514020.
      View in: PubMed   Mentions: 43     Fields:    Translation:CellsPHPublic Health
    173. Preparation and metatranscriptomic analyses of host-microbe systems. Methods Enzymol. 2013; 531:169-85. Hampton-Marcell JT, Moormann SM, Owens SM, Gilbert JA. PMID: 24060121.
      View in: PubMed   Mentions: 5     Fields:    Translation:Cells
    174. Cross-biome metagenomic analyses of soil microbial communities and their functional attributes. Proc Natl Acad Sci U S A. 2012 Dec 26; 109(52):21390-5. Fierer N, Leff JW, Adams BJ, Nielsen UN, Bates ST, Lauber CL, Owens S, Gilbert JA, Wall DH, Caporaso JG. PMID: 23236140.
      View in: PubMed   Mentions: 259     Fields:    Translation:CellsPHPublic Health
    175. Comparative metagenomic analysis of soil microbial communities across three hexachlorocyclohexane contamination levels. PLoS One. 2012; 7(9):e46219. Sangwan N, Lata P, Dwivedi V, Singh A, Niharika N, Kaur J, Anand S, Malhotra J, Jindal S, Nigam A, Lal D, Dua A, Saxena A, Garg N, Verma M, Kaur J, Mukherjee U, Gilbert JA, Dowd SE, Raman R, Khurana P, Khurana JP, Lal R. PMID: 23029440.
      View in: PubMed   Mentions: 28     Fields:    Translation:AnimalsCellsPHPublic Health
    176. RCN4GSC Workshop Report: Managing Data at the Interface of Biodiversity and (Meta)Genomics, March 2011. Stand Genomic Sci. 2012 Oct 10; 7(1):159-65. Robbins RJ, Amaral-Zettler L, Bik H, Blum S, Edwards J, Field D, Garrity G, Gilbert JA, Kottmann R, Krishtalka L, Lapp H, Lawrence C, Morrison N, Tuama EÓ, Parr C, San Gil I, Schindel D, Schriml L, Vieglas D, Wooley J. PMID: 23451294.
      View in: PubMed   Mentions:
    177. A call for an international network of genomic observatories (GOs). Gigascience. 2012 Jul 12; 1(1):5. Davies N, Meyer C, Gilbert JA, Amaral-Zettler L, Deck J, Bicak M, Rocca-Serra P, Assunta-Sansone S, Willis K, Field D. PMID: 23587188.
      View in: PubMed   Mentions: 8     Fields:    
    178. Unlocking the potential of metagenomics through replicated experimental design. Nat Biotechnol. 2012 Jun 07; 30(6):513-20. Knight R, Jansson J, Field D, Fierer N, Desai N, Fuhrman JA, Hugenholtz P, van der Lelie D, Meyer F, Stevens R, Bailey MJ, Gordon JI, Kowalchuk GA, Gilbert JA. PMID: 22678395.
      View in: PubMed   Mentions: 70     Fields:    Translation:HumansAnimals
    179. Modeling microbial community structure and functional diversity across time and space. FEMS Microbiol Lett. 2012 Jul; 332(2):91-8. Larsen PE, Gibbons SM, Gilbert JA. PMID: 22553907.
      View in: PubMed   Mentions: 9     Fields:    
    180. Report of the 13(th) Genomic Standards Consortium Meeting, Shenzhen, China, March 4-7, 2012. Stand Genomic Sci. 2012 May 25; 6(2):276-86. Gilbert JA, Bao Y, Wang H, Sansone SA, Edmunds SC, Morrison N, Meyer F, Schriml LM, Davies N, Sterk P, Wilkening J, Garrity GM, Field D, Robbins R, Smith DP, Mizrachi I, Moreau C. PMID: 22768370.
      View in: PubMed   Mentions:
    181. Predicting bacterial community assemblages using an artificial neural network approach. Nat Methods. 2012 Apr 15; 9(6):621-5. Larsen PE, Field D, Gilbert JA. PMID: 22504588.
      View in: PubMed   Mentions: 36     Fields:    Translation:Cells
    182. Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms. ISME J. 2012 Aug; 6(8):1621-4. Caporaso JG, Lauber CL, Walters WA, Berg-Lyons D, Huntley J, Fierer N, Owens SM, Betley J, Fraser L, Bauer M, Gormley N, Gilbert JA, Smith G, Knight R. PMID: 22402401.
      View in: PubMed   Mentions: 1512     Fields:    Translation:CellsPHPublic Health
    183. Conceptualizing a Genomics Software Institute (GSI). Stand Genomic Sci. 2012 Mar 19; 6(1):136-44. Gilbert JA, Catlett C, Desai N, Knight R, White O, Robbins R, Sankaran R, Sansone SA, Field D, Meyer F. PMID: 22675605.
      View in: PubMed   Mentions:
    184. Whole-genome sequence of the human pathogen Legionella pneumophila serogroup 12 strain 570-CO-H. J Bacteriol. 2012 Mar; 194(6):1613-4. Amaro F, Gilbert JA, Owens S, Trimble W, Shuman HA. PMID: 22374950.
      View in: PubMed   Mentions: 12     Fields:    Translation:HumansCells
    185. From genomics to metagenomics. Curr Opin Biotechnol. 2012 Feb; 23(1):72-6. Desai N, Antonopoulos D, Gilbert JA, Glass EM, Meyer F. PMID: 22227326.
      View in: PubMed   Mentions: 18     Fields:    Translation:Humans
    186. Meeting report: the 2 annual argonne soils workshop, argonne national laboratory, chicago illinois, USA, october 6-8, 2010. Stand Genomic Sci. 2011 Nov 30; 5(2):198-202. O'Brien SL, Glass EM, Brulc JM, Gilbert JA, Antonopoulos DA, Meyer F. PMID: 22180822.
      View in: PubMed   Mentions:
    187. The Western English Channel contains a persistent microbial seed bank. ISME J. 2012 Jun; 6(6):1089-93. Caporaso JG, Paszkiewicz K, Field D, Knight R, Gilbert JA. PMID: 22071345.
      View in: PubMed   Mentions: 70     Fields:    Translation:Cells
    188. Defining seasonal marine microbial community dynamics. ISME J. 2012 Feb; 6(2):298-308. Gilbert JA, Steele JA, Caporaso JG, Steinbrück L, Reeder J, Temperton B, Huse S, McHardy AC, Knight R, Joint I, Somerfield P, Fuhrman JA, Field D. PMID: 21850055.
      View in: PubMed   Mentions: 225     Fields:    Translation:Cells
    189. Predicted Relative Metabolomic Turnover (PRMT): determining metabolic turnover from a coastal marine metagenomic dataset. Microb Inform Exp. 2011 Jun 14; 1(1):4. Larsen PE, Collart FR, Field D, Meyer F, Keegan KP, Henry CS, McGrath J, Quinn J, Gilbert JA. PMID: 22587810.
      View in: PubMed   Mentions:
    190. The importance of metagenomic surveys to microbial ecology: or why Darwin would have been a metagenomic scientist. Microb Inform Exp. 2011 Jun 14; 1(1):5. Gilbert JA, O'Dor R, King N, Vogel TM. PMID: 22587826.
      View in: PubMed   Mentions:
    191. Omics for understanding microbial functional dynamics. Environ Microbiol. 2012 Jan; 14(1):1-3. Jansson JK, Neufeld JD, Moran MA, Gilbert JA. PMID: 21651688.
      View in: PubMed   Mentions: 18     Fields:    
    192. The genomic standards consortium: bringing standards to life for microbial ecology. ISME J. 2011 Oct; 5(10):1565-7. Yilmaz P, Gilbert JA, Knight R, Amaral-Zettler L, Karsch-Mizrachi I, Cochrane G, Nakamura Y, Sansone SA, Glöckner FO, Field D. PMID: 21472015.
      View in: PubMed   Mentions: 19     Fields:    
    193. Meeting Report from the Genomic Standards Consortium (GSC) Workshop 10. Stand Genomic Sci. 2010 Dec 25; 3(3):225-31. Glass E, Meyer F, Gilbert JA, Field D, Hunter S, Kottmann R, Kyrpides N, Sansone S, Schriml L, Sterk P, White O, Wooley J. PMID: 21304723.
      View in: PubMed   Mentions:
    194. Meeting report: the terabase metagenomics workshop and the vision of an Earth microbiome project. Stand Genomic Sci. 2010 Dec 25; 3(3):243-8. Gilbert JA, Meyer F, Antonopoulos D, Balaji P, Brown CT, Brown CT, Desai N, Eisen JA, Evers D, Field D, Feng W, Huson D, Jansson J, Knight R, Knight J, Kolker E, Konstantindis K, Kostka J, Kyrpides N, Mackelprang R, McHardy A, Quince C, Raes J, Sczyrba A, Shade A, Stevens R. PMID: 21304727.
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    195. The Earth Microbiome Project: Meeting report of the "1 EMP meeting on sample selection and acquisition" at Argonne National Laboratory October 6 2010. Stand Genomic Sci. 2010 Dec 25; 3(3):249-53. Gilbert JA, Meyer F, Jansson J, Gordon J, Pace N, Tiedje J, Ley R, Fierer N, Field D, Kyrpides N, Glöckner FO, Klenk HP, Wommack KE, Glass E, Docherty K, Gallery R, Stevens R, Knight R. PMID: 21304728.
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    196. Meeting report: GSC M5 roundtable at the 13th International Society for Microbial Ecology meeting in Seattle, WA, USA August 22-27, 2010. Stand Genomic Sci. 2010 Dec 15; 3(3):235-9. Gilbert JA, Meyer F, Knight R, Field D, Kyrpides N, Yilmaz P, Wooley J. PMID: 21304725.
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    197. The taxonomic and functional diversity of microbes at a temperate coastal site: a 'multi-omic' study of seasonal and diel temporal variation. PLoS One. 2010 Nov 29; 5(11):e15545. Gilbert JA, Field D, Swift P, Thomas S, Cummings D, Temperton B, Weynberg K, Huse S, Hughes M, Joint I, Somerfield PJ, Mühling M. PMID: 21124740.
      View in: PubMed   Mentions: 74     Fields:    Translation:CellsPHPublic Health
    198. The future of microbial metagenomics (or is ignorance bliss?). ISME J. 2011 May; 5(5):777-9. Gilbert JA, Meyer F, Bailey MJ. PMID: 21107444.
      View in: PubMed   Mentions: 16     Fields:    Translation:Cells
    199. Metagenomes and metatranscriptomes from the L4 long-term coastal monitoring station in the Western English Channel. Stand Genomic Sci. 2010 Oct 27; 3(2):183-93. Gilbert JA, Meyer F, Schriml L, Joint IR, Mühling M, Field D. PMID: 21304748.
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    200. Metagenomics: A foundling finds its feet. Stand Genomic Sci. 2010 Oct 27; 3(2):212-3. Gilbert JA, Meyer F, Field D, Schriml LM, Garrity GM. PMID: 21304751.
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    201. Marine genomics: at the interface of marine microbial ecology and biodiscovery. Microb Biotechnol. 2010 Sep; 3(5):531-43. Heidelberg KB, Gilbert JA, Joint I. PMID: 20953417.
      View in: PubMed   Mentions: 13     Fields:    
    202. Bioturbating shrimp alter the structure and diversity of bacterial communities in coastal marine sediments. ISME J. 2010 Dec; 4(12):1531-44. Laverock B, Smith CJ, Tait K, Osborn AM, Widdicombe S, Gilbert JA. PMID: 20596074.
      View in: PubMed   Mentions: 21     Fields:    Translation:AnimalsCellsPHPublic Health
    203. Comparison of multiple metagenomes using phylogenetic networks based on ecological indices. ISME J. 2010 Oct; 4(10):1236-42. Mitra S, Gilbert JA, Field D, Huson DH. PMID: 20428222.
      View in: PubMed   Mentions: 13     Fields:    
    204. Evidence for phosphonate usage in the coral holobiont. ISME J. 2010 Mar; 4(3):459-61. Thomas S, Burdett H, Temperton B, Wick R, Snelling D, McGrath JW, Quinn JP, Munn C, Gilbert JA. PMID: 19956272.
      View in: PubMed   Mentions: 14     Fields:    Translation:AnimalsCells
    205. The seasonal structure of microbial communities in the Western English Channel. Environ Microbiol. 2009 Dec; 11(12):3132-9. Gilbert JA, Field D, Swift P, Newbold L, Oliver A, Smyth T, Somerfield PJ, Huse S, Joint I. PMID: 19659500.
      View in: PubMed   Mentions: 123     Fields:    Translation:CellsPHPublic Health
    206. Bias in assessments of marine microbial biodiversity in fosmid libraries as evaluated by pyrosequencing. ISME J. 2009 Jul; 3(7):792-6. Temperton B, Field D, Oliver A, Tiwari B, Mühling M, Joint I, Gilbert JA. PMID: 19340085.
      View in: PubMed   Mentions: 17     Fields:    Translation:Cells
    207. Potential for phosphonoacetate utilization by marine bacteria in temperate coastal waters. Environ Microbiol. 2009 Jan; 11(1):111-25. Gilbert JA, Thomas S, Cooley NA, Kulakova A, Field D, Booth T, McGrath JW, Quinn JP, Joint I. PMID: 18783384.
      View in: PubMed   Mentions: 26     Fields:    Translation:Cells
    208. Detection of large numbers of novel sequences in the metatranscriptomes of complex marine microbial communities. PLoS One. 2008 Aug 22; 3(8):e3042. Gilbert JA, Field D, Huang Y, Edwards R, Li W, Gilna P, Joint I. PMID: 18725995.
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    209. A rare SAR11 fosmid clone confirming genetic variability in the 'Candidatus Pelagibacter ubique' genome. ISME J. 2008 Jul; 2(7):790-3. Gilbert JA, Mühling M, Joint I. PMID: 18496576.
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