Jack Gilbert

Title(s)Professor, Pediatrics
SchoolVc-health Sciences-schools
Address9500 Gilman Drive #
La Jolla CA 92093
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Understanding the risks of co-exposures in a changing world: a case study of dual monitoring of the biotoxin domoic acid and Vibrio spp. in Pacific oyster. Environ Monit Assess. 2024 Apr 12; 196(5):447. Lie AAY, Zimmer-Faust AG, Diner RE, Kunselman E, Daniel Z, Van Artsdalen K, Salas Garcia MC, Gilbert JA, Shultz D, Chokry J, Langlois K, Smith J. PMID: 38607511.
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    2. Where do the pathogens that cause surgical site infections come from? Sci Transl Med. 2024 Apr 10; 16(742):eado1449. Gilbert JA, Alverdy J. PMID: 38598617.
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    3. Transforming Big Data into AI-ready data for nutrition and obesity research. Obesity (Silver Spring). 2024 Mar 01. Thomas DM, Knight R, Gilbert JA, Cornelis MC, Gantz MG, Burdekin K, Cummiskey K, Sumner SCJ, Pathmasiri W, Sazonov E, Gabriel KP, Dooley EE, Green MA, Pfluger A, Kleinberg S. PMID: 38426232.
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    4. Harnessing the Power Within: Engineering the Microbiome for Enhanced Gynecologic Health. Reprod Fertil. 2024 Mar 01. Brennan C, Chan K, Kumar T, Maissy E, Brubaker L, Dothard MI, Gilbert JA, Gilbert KE, Lewis AL, Thackray V, Zarrinpar A, Knight R. PMID: 38513356.
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    5. Evaluation of the safety and efficacy of fecal microbiota transplantations in bottlenose dolphins (Tursiops truncatus) using metagenomic sequencing. J Appl Microbiol. 2024 Feb 01; 135(2). Linnehan BK, Kodera SM, Allard SM, Brodie EC, Allaband C, Knight R, Lutz HL, Carroll MC, Meegan JM, Jensen ED, Gilbert JA. PMID: 38305096; PMCID: PMC10853691.
      View in: PubMed   Mentions:    Fields:    Translation:Animals
    6. Inflammatory dietary potential is associated with vitamin depletion and gut microbial dysbiosis in early pregnancy. medRxiv. 2024 Jan 16. Alvernaz SA, Wenzel ES, Nagelli U, Pezley LB, LaBomascus B, Gilbert JA, Maki PM, Tussing-Humphreys L, Peñalver Bernabé B. PMID: 38076865; PMCID: PMC10705629.
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    7. Biocontrol in built environments to reduce pathogen exposure and infection risk. ISME J. 2024 Jan 08; 18(1). Gottel NR, Hill MS, Neal MJ, Allard SM, Zengler K, Gilbert JA. PMID: 38365248; PMCID: PMC10848226.
      View in: PubMed   Mentions:    Fields:    Translation:HumansCells
    8. Commensal Oral Microbiota, Disease Severity and Mortality in Fibrotic Lung Disease. Am J Respir Crit Care Med. 2023 Dec 05. O'Dwyer DN, Kim JS, Ma SF, Ranjan P, Das P, Lipinski JH, Metcalf JD, Falkowski NR, Yow E, Anstrom K, Dickson RP, Huang Y, Gilbert JA, Martinez FJ, Noth I. PMID: 38051927.
      View in: PubMed   Mentions:    Fields:    
    9. Microbiology of the built environment: harnessing human-associated built environment research to inform the study and design of animal nests and enclosures. Microbiol Mol Biol Rev. 2023 Dec 20; 87(4):e0012121. Hill MS, Gilbert JA. PMID: 38047636; PMCID: PMC10732082.
      View in: PubMed   Mentions:    Fields:    Translation:HumansAnimalsPHPublic Health
    10. Guest editorial from The BMS Annual Lecture 2023. Post Reprod Health. 2023 Dec; 29(4):187-189. Gilbert JA, Dothard M. PMID: 38059588.
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    11. Time to rethink academic publishing: the peer reviewer crisis. mBio. 2023 Nov 17; e0109123. Tropini C, Finlay BB, Nichter M, Melby MK, Metcalf JL, Dominguez-Bello MG, Zhao L, McFall-Ngai MJ, Geva-Zatorsky N, Amato KR, Undurraga EA, Poinar HN, Gilbert JA. PMID: 37975666; PMCID: PMC10746150.
      View in: PubMed   Mentions:    Fields:    
    12. Gut microbiota and fecal short chain fatty acids differ with adiposity and country of origin: the METS-microbiome study. Nat Commun. 2023 08 24; 14(1):5160. Ecklu-Mensah G, Choo-Kang C, Maseng MG, Donato S, Bovet P, Viswanathan B, Bedu-Addo K, Plange-Rhule J, Oti Boateng P, Forrester TE, Williams M, Lambert EV, Rae D, Sinyanya N, Luke A, Layden BT, O'Keefe S, Gilbert JA, Dugas LR. PMID: 37620311; PMCID: PMC10449869.
      View in: PubMed   Mentions: 7     Fields:    Translation:Humans
    13. The cervical microbiota of Hispanics living in Puerto Rico is nonoptimal regardless of HPV status. mSystems. 2023 08 31; 8(4):e0035723. Vargas-Robles D, Romaguera J, Alvarado-Velez I, Tosado-Rodríguez E, Dominicci-Maura A, Sanchez M, Wiggin KJ, Martinez-Ferrer M, Gilbert JA, Forney LJ, Godoy-Vitorino F. PMID: 37534938; PMCID: PMC10469956.
      View in: PubMed   Mentions: 3     Fields:    Translation:HumansCells
    14. Multi-level analysis of the gut-brain axis shows autism spectrum disorder-associated molecular and microbial profiles. Nat Neurosci. 2023 07; 26(7):1208-1217. Morton JT, Jin DM, Mills RH, Shao Y, Rahman G, McDonald D, Zhu Q, Balaban M, Jiang Y, Cantrell K, Gonzalez A, Carmel J, Frankiensztajn LM, Martin-Brevet S, Berding K, Needham BD, Zurita MF, David M, Averina OV, Kovtun AS, Noto A, Mussap M, Wang M, Frank DN, Li E, Zhou W, Fanos V, Danilenko VN, Wall DP, Cárdenas P, Baldeón ME, Jacquemont S, Koren O, Elliott E, Xavier RJ, Mazmanian SK, Knight R, Gilbert JA, Donovan SM, Lawley TD, Carpenter B, Bonneau R, Taroncher-Oldenburg G. PMID: 37365313; PMCID: PMC10322709.
      View in: PubMed   Mentions: 18     Fields:    Translation:Humans
    15. Host and Water Microbiota Are Differentially Linked to Potential Human Pathogen Accumulation in Oysters. Appl Environ Microbiol. 2023 07 26; 89(7):e0031823. Diner RE, Zimmer-Faust A, Cooksey E, Allard S, Kodera SM, Kunselman E, Garodia Y, Verhougstraete MP, Allen AE, Griffith J, Gilbert JA. PMID: 37318344; PMCID: PMC10370324.
      View in: PubMed   Mentions:    Fields:    Translation:HumansAnimalsCells
    16. Universal gut microbial relationships in the gut microbiome of wild baboons. Elife. 2023 05 09; 12. Roche KE, Bjork JR, Dasari MR, Grieneisen L, Jansen D, Gould TJ, Gesquiere LR, Barreiro LB, Alberts SC, Blekhman R, Gilbert JA, Tung J, Mukherjee S, Archie EA. PMID: 37158607; PMCID: PMC10292843.
      View in: PubMed   Mentions: 5     Fields:    Translation:HumansAnimalsCells
    17. The effects of hormone replacement therapy on the microbiomes of postmenopausal women. Climacteric. 2023 06; 26(3):182-192. Dothard MI, Allard SM, Gilbert JA. PMID: 37051868.
      View in: PubMed   Mentions: 1     Fields:    Translation:Humans
    18. Gut microbiota and fecal short chain fatty acids differ with adiposity and country of origin: The METS-Microbiome Study. bioRxiv. 2023 Mar 22. Ecklu-Mensah G, Choo-Kang C, Gjerstad Maseng M, Donato S, Bovet P, Bedu-Addo K, Plange-Rhule J, Forrester TE, Lambert EV, Rae D, Luke A, Layden BT, O'Keefe S, Gilbert JA, Dugas LR. PMID: 36993742; PMCID: PMC10055249.
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    19. Characterization of SARS-CoV-2 Distribution and Microbial Succession in a Clinical Microbiology Testing Facility during the SARS-CoV-2 Pandemic. Microbiol Spectr. 2023 Mar 14; e0450922. Sah GP, Kovalick G, Chopyk J, Kuo P, Huang L, Ghatbale P, Das P, Realegeno S, Knight R, Gilbert JA, Pride DT. PMID: 36916973; PMCID: PMC10100919.
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    20. Plasma metabolites with mechanistic and clinical links to the neurovascular disease cavernous angioma. Commun Med (Lond). 2023 Mar 03; 3(1):35. Srinath A, Xie B, Li Y, Sone JY, Romanos S, Chen C, Sharma A, Polster S, Dorrestein PC, Weldon KC, DeBiasse D, Moore T, Lightle R, Koskimäki J, Zhang D, Stadnik A, Piedad K, Hagan M, Shkoukani A, Carrión-Penagos J, Bi D, Shen L, Shenkar R, Ji Y, Sidebottom A, Pamer E, Gilbert JA, Kahn ML, D'Souza M, Sulakhe D, Awad IA, Girard R. PMID: 36869161; PMCID: PMC9984539.
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    21. Microbiome response in an urban river system is dominated by seasonality over wastewater treatment upgrades. Environ Microbiome. 2023 Feb 19; 18(1):10. Kodera SM, Sharma A, Martino C, Dsouza M, Grippo M, Lutz HL, Knight R, Gilbert JA, Negri C, Allard SM. PMID: 36805022; PMCID: PMC9938989.
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    22. Recognizing the Contribution of Data: The Use of Companion Articles To Highlight Novel Resources in Microbiology Research. mSystems. 2023 Feb 23; 8(1):e0127122. Gilbert JA, Newton ILG, Reguera G. PMID: 36656010; PMCID: PMC9948691.
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    23. Recognizing the Contribution of Data: The Use of Companion Articles To Highlight Novel Resources in Microbiology Research. Appl Environ Microbiol. 2023 02 28; 89(2):e0215322. Gilbert JA, Newton ILG, Reguera G. PMID: 36656005; PMCID: PMC9973031.
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    24. Recognizing the Contribution of Data: The Use of Companion Articles To Highlight Novel Resources in Microbiology Research. Microbiol Resour Announc. 2023 Feb 16; 12(2):e0134122. Gilbert JA, Newton ILG, Reguera G. PMID: 36656000; PMCID: PMC9933723.
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    25. Plant and fungal species interactions differ between aboveground and belowground habitats in mountain forests of eastern China. Sci China Life Sci. 2023 05; 66(5):1134-1150. Yang T, Tedersoo L, Soltis PS, Soltis DE, Sun M, Ma Y, Ni Y, Liu X, Fu X, Shi Y, Lin HY, Zhao YP, Fu C, Dai CC, Gilbert JA, Chu H. PMID: 36462107.
      View in: PubMed   Mentions: 6     Fields:    Translation:HumansAnimalsPHPublic Health
    26. Standardized multi-omics of Earth's microbiomes reveals microbial and metabolite diversity. Nat Microbiol. 2022 12; 7(12):2128-2150. Shaffer JP, Nothias LF, Thompson LR, Sanders JG, Salido RA, Couvillion SP, Brejnrod AD, Lejzerowicz F, Haiminen N, Huang S, Lutz HL, Zhu Q, Martino C, Morton JT, Karthikeyan S, Nothias-Esposito M, Dührkop K, Böcker S, Kim HW, Aksenov AA, Bittremieux W, Minich JJ, Marotz C, Bryant MM, Sanders K, Schwartz T, Humphrey G, Vásquez-Baeza Y, Tripathi A, Parida L, Carrieri AP, Beck KL, Das P, González A, McDonald D, Ladau J, Karst SM, Albertsen M, Ackermann G, DeReus J, Thomas T, Petras D, Shade A, Stegen J, Song SJ, Metz TO, Swafford AD, Dorrestein PC, Jansson JK, Gilbert JA, Knight R, Earth Microbiome Project 500 (EMP500) Consortium. PMID: 36443458; PMCID: PMC9712116.
      View in: PubMed   Mentions: 17     Fields:    Translation:Animals
    27. Erratum for Hu et al., "Effects of 'Healthy' Fecal Microbiota Transplantation against the Deterioration of Depression in Fawn-Hooded Rats". mSystems. 2022 Oct 18; e0095322. Hu B, Das P, Lv X, Shi M, Aa J, Wang K, Duan L, Gilbert JA, Nie Y, Wu XL. PMID: 36255205.
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    28. Multi-omics analyses of airway host-microbe interactions in chronic obstructive pulmonary disease identify potential therapeutic interventions. Nat Microbiol. 2022 09; 7(9):1361-1375. Yan Z, Chen B, Yang Y, Yi X, Wei M, Ecklu-Mensah G, Buschmann MM, Liu H, Gao J, Liang W, Liu X, Yang J, Ma W, Liang Z, Wang F, Chen D, Wang L, Shi W, Stampfli MR, Li P, Gong S, Chen X, Shu W, El-Omar EM, Gilbert JA, Blaser MJ, Zhou H, Chen R, Wang Z. PMID: 35995842.
      View in: PubMed   Mentions: 25     Fields:    Translation:HumansAnimalsCells
    29. Synchrony and idiosyncrasy in the gut microbiome of wild baboons. Nat Ecol Evol. 2022 07; 6(7):955-964. Björk JR, Dasari MR, Roche K, Grieneisen L, Gould TJ, Grenier JC, Yotova V, Gottel N, Jansen D, Gesquiere LR, Gordon JB, Learn NH, Wango TL, Mututua RS, Kinyua Warutere J, Siodi L, Mukherjee S, Barreiro LB, Alberts SC, Gilbert JA, Tung J, Blekhman R, Archie EA. PMID: 35654895; PMCID: PMC9271586.
      View in: PubMed   Mentions: 12     Fields:    Translation:HumansAnimalsCells
    30. Variation in Survival and Gut Microbiome Composition of Hatchery-Grown Native Oysters at Various Locations within the Puget Sound. Microbiol Spectr. 2022 06 29; 10(3):e0198221. Kunselman E, Minich JJ, Horwith M, Gilbert JA, Allen EE. PMID: 35536036; PMCID: PMC9241838.
      View in: PubMed   Mentions: 1     Fields:    Translation:AnimalsCells
    31. Effects of 'Healthy' Fecal Microbiota Transplantation against the Deterioration of Depression in Fawn-Hooded Rats. mSystems. 2022 Jun 28; 7(3):e0021822. Hu B, Das P, Lv X, Shi M, Aa J, Wang K, Duan L, Gilbert JA, Nie Y, Wu XL. PMID: 35481347; PMCID: PMC9239139.
      View in: PubMed   Mentions: 15     Fields:    
    32. The impact of maternal asthma on the preterm infants' gut metabolome and microbiome (MAP study). Sci Rep. 2022 04 19; 12(1):6437. Bai-Tong SS, Thoemmes MS, Weldon KC, Motazavi D, Kitsen J, Hansen S, Furst A, Geng B, Song SJ, Gilbert JA, Bode L, Dorrestein PC, Knight R, Leibel SA, Leibel SL. PMID: 35440708; PMCID: PMC9018729.
      View in: PubMed   Mentions: 2     Fields:    Translation:Humans
    33. Phylogeny-Aware Analysis of Metagenome Community Ecology Based on Matched Reference Genomes while Bypassing Taxonomy. mSystems. 2022 04 26; 7(2):e0016722. Zhu Q, Huang S, Gonzalez A, McGrath I, McDonald D, Haiminen N, Armstrong G, Vázquez-Baeza Y, Yu J, Kuczynski J, Sepich-Poore GD, Swafford AD, Das P, Shaffer JP, Lejzerowicz F, Belda-Ferre P, Havulinna AS, Méric G, Niiranen T, Lahti L, Salomaa V, Kim HC, Jain M, Inouye M, Gilbert JA, Knight R. PMID: 35369727; PMCID: PMC9040630.
      View in: PubMed   Mentions: 19     Fields:    Translation:Humans
    34. Conceptual strategies for characterizing interactions in microbial communities. iScience. 2022 Feb 18; 25(2):103775. Kodera SM, Das P, Gilbert JA, Lutz HL. PMID: 35146390; PMCID: PMC8819398.
      View in: PubMed   Mentions: 4  
    35. Gut microbiota-driven brain Aβ amyloidosis in mice requires microglia. J Exp Med. 2022 01 03; 219(1). Dodiya HB, Lutz HL, Weigle IQ, Patel P, Michalkiewicz J, Roman-Santiago CJ, Zhang CM, Liang Y, Srinath A, Zhang X, Xia J, Olszewski M, Zhang X, Schipma MJ, Chang EB, Tanzi RE, Gilbert JA, Sisodia SS. PMID: 34854884; PMCID: PMC8647415.
      View in: PubMed   Mentions: 26     Fields:    Translation:AnimalsCells
    36. Continental-Scale Paddy Soil Bacterial Community Structure, Function, and Biotic Interaction. mSystems. 2021 Oct 26; 6(5):e0136820. Li HY, Wang H, Tao XH, Wang XZ, Jin WZ, Gilbert JA, Zhu YG, Zhang ZJ. PMID: 34546068; PMCID: PMC8547477.
      View in: PubMed   Mentions: 2     Fields:    
    37. Gut microbiota alterations in response to sleep length among African-origin adults. PLoS One. 2021; 16(9):e0255323. Fei N, Choo-Kang C, Reutrakul S, Crowley SJ, Rae D, Bedu-Addo K, Plange-Rhule J, Forrester TE, Lambert EV, Bovet P, Riesen W, Korte W, Luke A, Layden BT, Gilbert JA, Dugas LR. PMID: 34495955; PMCID: PMC8425534.
      View in: PubMed   Mentions: 13     Fields:    Translation:HumansCells
    38. Bare Versus Hair: Do Pubic Hair Grooming Preferences Dictate the Urogenital Microbiome? Female Pelvic Med Reconstr Surg. 2021 09 01; 27(9):532-537. Geynisman-Tan J, Kenton K, Tavathia M, Yee A, Gilbert JA, Collins S, Lewicky-Gaupp C, Mueller M. PMID: 33181518.
      View in: PubMed   Mentions: 3     Fields:    Translation:HumansAnimals
    39. Associations between Afrotropical bats, eukaryotic parasites, and microbial symbionts. Mol Ecol. 2022 04; 31(7):1939-1950. Lutz HL, Gilbert JA, Dick CW. PMID: 34181795; PMCID: PMC9546020.
      View in: PubMed   Mentions: 6     Fields:    Translation:AnimalsCells
    40. Gut microbiome heritability is nearly universal but environmentally contingent. Science. 2021 07 09; 373(6551):181-186. Grieneisen L, Dasari M, Gould TJ, Björk JR, Grenier JC, Yotova V, Jansen D, Gottel N, Gordon JB, Learn NH, Gesquiere LR, Wango TL, Mututua RS, Warutere JK, Siodi L, Gilbert JA, Barreiro LB, Alberts SC, Tung J, Archie EA, Blekhman R. PMID: 34244407; PMCID: PMC8377764.
      View in: PubMed   Mentions: 63     Fields:    Translation:HumansAnimalsCells
    41. Microbiome is not linked to clinical disease severity of familial Mediterranean fever in an international cohort of children. Clin Exp Rheumatol. 2021 Sep-Oct; 39 Suppl 132(5):102-108. Ozen S, Lutz HL, Rivera VM, Reiff A, Batu ED, Anderson E, Salas Garcia M, Aldrovandi G, Akbaba TH, Pazarbasi I, Bilginer Y, Balat A, Balci-Peynircioglu B, Gilbert JA, Dedeoglu F, Hausmann JS. PMID: 34251310.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    42. Children with Autism and Their Typically Developing Siblings Differ in Amplicon Sequence Variants and Predicted Functions of Stool-Associated Microbes. mSystems. 2021 Apr 06; 6(2). David MM, Tataru C, Daniels J, Schwartz J, Keating J, Hampton-Marcell J, Gottel N, Gilbert JA, Wall DP. PMID: 33824194; PMCID: PMC8561662.
      View in: PubMed   Mentions: 12     Fields:    
    43. Suppression of local type I interferon by gut microbiota-derived butyrate impairs antitumor effects of ionizing radiation. J Exp Med. 2021 03 01; 218(3). Yang K, Hou Y, Zhang Y, Liang H, Sharma A, Zheng W, Wang L, Torres R, Tatebe K, Chmura SJ, Pitroda SP, Gilbert JA, Fu YX, Weichselbaum RR. PMID: 33496784; PMCID: PMC7844434.
      View in: PubMed   Mentions: 31     Fields:    Translation:AnimalsCells
    44. Differential Fecal Microbiome Dysbiosis after Equivalent Traumatic Brain Injury in Aged Versus Young Adult Mice. J Exp Neurol. 2021; 2(3):120-130. Davis BT, Islam MBAR, Das P, Gilbert JA, Ho KJ, Schwulst SJ. PMID: 34825244; PMCID: PMC8612634.
      View in: PubMed   Mentions: 2  
    45. Effects of Extended Postmortem Interval on Microbial Communities in Organs of the Human Cadaver. Front Microbiol. 2020; 11:569630. Lutz H, Vangelatos A, Gottel N, Osculati A, Visona S, Finley SJ, Gilbert JA, Javan GT. PMID: 33363519; PMCID: PMC7752770.
      View in: PubMed   Mentions: 16  
    46. Correction to: The chemodiversity of paddy soil dissolved organic matter correlates with microbial community at continental scales. Microbiome. 2020 Nov 28; 8(1):169. Li HY, Wang H, Wang HT, Xin PY, Xu XH, Ma Y, Liu WP, Teng CY, Jiang CL, Lou LP, Arnold W, Cralle L, Zhu YG, Chu JF, Gilbert JA, Zhang ZJ. PMID: 33248461; PMCID: PMC7697363.
      View in: PubMed   Mentions: 1     Fields:    
    47. Microbial context predicts SARS-CoV-2 prevalence in patients and the hospital built environment. medRxiv. 2020 Nov 22. Marotz C, Belda-Ferre P, Ali F, Das P, Huang S, Cantrell K, Jiang L, Martino C, Diner RE, Rahman G, McDonald D, Armstrong G, Kodera S, Donato S, Ecklu-Mensah G, Gottel N, Garcia MCS, Chiang LY, Salido RA, Shaffer JP, Bryant M, Sanders K, Humphrey G, Ackermann G, Haiminen N, Beck KL, Kim HC, Carrieri AP, Parida L, Vázquez-Baeza Y, Torriani FJ, Knight R, Gilbert JA, Sweeney DA, Allard SM. PMID: 33236030; PMCID: PMC7685343.
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    48. Handwashing and Detergent Treatment Greatly Reduce SARS-CoV-2 Viral Load on Halloween Candy Handled by COVID-19 Patients. mSystems. 2020 Oct 29; 5(6). Salido RA, Morgan SC, Rojas MI, Magallanes CG, Marotz C, DeHoff P, Belda-Ferre P, Aigner S, Kado DM, Yeo GW, Gilbert JA, Laurent L, Rohwer F, Knight R. PMID: 33127739; PMCID: PMC7743156.
      View in: PubMed   Mentions: 3     Fields:    
    49. Role of Carbon Monoxide in Host-Gut Microbiome Communication. Chem Rev. 2020 12 23; 120(24):13273-13311. Hopper CP, De La Cruz LK, Lyles KV, Wareham LK, Gilbert JA, Eichenbaum Z, Magierowski M, Poole RK, Wollborn J, Wang B. PMID: 33089988.
      View in: PubMed   Mentions: 13     Fields:    Translation:HumansAnimalsCells
    50. Introducing the Mangrove Microbiome Initiative: Identifying Microbial Research Priorities and Approaches To Better Understand, Protect, and Rehabilitate Mangrove Ecosystems. mSystems. 2020 Oct 20; 5(5). Allard SM, Costa MT, Bulseco AN, Helfer V, Wilkins LGE, Hassenrück C, Zengler K, Zimmer M, Erazo N, Mazza Rodrigues JL, Duke N, Melo VMM, Vanwonterghem I, Junca H, Makonde HM, Jiménez DJ, Tavares TCL, Fusi M, Daffonchio D, Duarte CM, Peixoto RS, Rosado AS, Gilbert JA, Bowman J. PMID: 33082281; PMCID: PMC7577295.
      View in: PubMed   Mentions: 13     Fields:    
    51. Draft Genome Sequence of Pseudarthrobacter sp. Strain ATCC 49442 (Formerly Micrococcus luteus), a Pyridine-Degrading Bacterium. Microbiol Resour Announc. 2020 Sep 17; 9(38). Gupta N, Skinner KA, Summers ZM, Edirisinghe JN, Weisenhorn PB, Faria JP, Marshall CW, Sharma A, Gottel NR, Gilbert JA, Henry CS, O'Loughlin EJ. PMID: 32943555; PMCID: PMC7498421.
      View in: PubMed   Mentions: 1  
    52. Chemical composition of material extractives influences microbial growth and dynamics on wetted wood materials. Sci Rep. 2020 09 02; 10(1):14500. Zhao D, Cardona C, Gottel N, Winton VJ, Thomas PM, Raba DA, Kelley ST, Henry C, Gilbert JA, Stephens B. PMID: 32879425; PMCID: PMC7467922.
      View in: PubMed   Mentions: 2     Fields:    Translation:AnimalsPHPublic Health
    53. Quantitative profiling of built environment bacterial and fungal communities reveals dynamic material dependent growth patterns and microbial interactions. Indoor Air. 2021 01; 31(1):188-205. Xu Y, Tandon R, Ancheta C, Arroyo P, Gilbert JA, Stephens B, Kelley ST. PMID: 32757488.
      View in: PubMed   Mentions: 6     Fields:    Translation:HumansAnimalsCellsPHPublic Health
    54. Draft Genome Sequence of 2-Methylpyridine-, 2-Ethylpyridine-, and 2-Hydroxypyridine-Degrading Arthrobacter sp. Strain ATCC 49987. Microbiol Resour Announc. 2020 Aug 20; 9(34). Gupta N, Skinner KA, Summers ZM, Edirisinghe JN, Faria JP, Marshall CW, Sharma A, Gottel NR, Gilbert JA, Henry CS, O'Loughlin EJ. PMID: 32816982; PMCID: PMC7441240.
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    55. Feasibility of using alternative swabs and storage solutions for paired SARS-CoV-2 detection and microbiome analysis in the hospital environment. medRxiv. 2020 Aug 13. Minich JJ, Ali F, Marotz C, Belda-Ferre P, Chiang L, Shaffer JP, Carpenter CS, McDonald D, Gilbert JA, Allard SM, Allen EE, Knight R, Sweeney DA, Swafford AD. PMID: 32511552; PMCID: PMC7274233.
      View in: PubMed   Mentions: 1  
    56. Spatial Compartmentalization of the Microbiome between the Lumen and Crypts Is Lost in the Murine Cecum following the Process of Surgery, Including Overnight Fasting and Exposure to Antibiotics. mSystems. 2020 Jun 09; 5(3). Zaborin A, Penalver Bernabe B, Keskey R, Sangwan N, Hyoju S, Gottel N, Gilbert JA, Zaborina O, Alverdy JC. PMID: 32518197; PMCID: PMC7289591.
      View in: PubMed   Mentions: 10     Fields:    
    57. Bacterial communities associated with cell phones and shoes. PeerJ. 2020; 8:e9235. Coil DA, Neches RY, Lang JM, Jospin G, Brown WE, Cavalier D, Hampton-Marcell J, Gilbert JA, Eisen JA. PMID: 32551196; PMCID: PMC7292020.
      View in: PubMed   Mentions: 4     Fields:    
    58. Earth microbial co-occurrence network reveals interconnection pattern across microbiomes. Microbiome. 2020 06 04; 8(1):82. Ma B, Wang Y, Ye S, Liu S, Stirling E, Gilbert JA, Faust K, Knight R, Jansson JK, Cardona C, Röttjers L, Xu J. PMID: 32498714; PMCID: PMC7273686.
      View in: PubMed   Mentions: 81     Fields:    Translation:AnimalsCellsPHPublic Health
    59. Detecting personal microbiota signatures at artificial crime scenes. Forensic Sci Int. 2020 Aug; 313:110351. Hampton-Marcell JT, Larsen P, Anton T, Cralle L, Sangwan N, Lax S, Gottel N, Salas-Garcia M, Young C, Duncan G, Lopez JV, Gilbert JA. PMID: 32559614.
      View in: PubMed   Mentions: 11     Fields:    Translation:Humans
    60. Permissive microbiome characterizes human subjects with a neurovascular disease cavernous angioma. Nat Commun. 2020 05 27; 11(1):2659. Polster SP, Sharma A, Tanes C, Tang AT, Mericko P, Cao Y, Carrión-Penagos J, Girard R, Koskimäki J, Zhang D, Stadnik A, Romanos SG, Lyne SB, Shenkar R, Yan K, Lee C, Akers A, Morrison L, Robinson M, Zafar A, Bittinger K, Kim H, Gilbert JA, Kahn ML, Shen L, Awad IA. PMID: 32461638; PMCID: PMC7253448.
      View in: PubMed   Mentions: 15     Fields:    Translation:Humans
    61. Fecal microbiota transplant rescues mice from human pathogen mediated sepsis by restoring systemic immunity. Nat Commun. 2020 05 11; 11(1):2354. Kim SM, DeFazio JR, Hyoju SK, Sangani K, Keskey R, Krezalek MA, Khodarev NN, Sangwan N, Christley S, Harris KG, Malik A, Zaborin A, Bouziat R, Ranoa DR, Wiegerinck M, Ernest JD, Shakhsheer BA, Fleming ID, Weichselbaum RR, Antonopoulos DA, Gilbert JA, Barreiro LB, Zaborina O, Jabri B, Alverdy JC. PMID: 32393794; PMCID: PMC7214422.
      View in: PubMed   Mentions: 39     Fields:    Translation:HumansAnimalsCells
    62. Microbiome profile associated with malignant pleural effusion. PLoS One. 2020; 15(5):e0232181. Shojaee S, Sharma A, Gottel N, Sanchez T, Gilbert JA, Rahman NM. PMID: 32384089; PMCID: PMC7209204.
      View in: PubMed   Mentions: 4     Fields:    Translation:Humans
    63. Implication of gut microbiota in the association between infant antibiotic exposure and childhood obesity and adiposity accumulation. Int J Obes (Lond). 2020 07; 44(7):1508-1520. Chen LW, Xu J, Soh SE, Aris IM, Tint MT, Gluckman PD, Tan KH, Shek LP, Chong YS, Yap F, Godfrey KM, Gilbert JA, Karnani N, Lee YS. PMID: 32321980; PMCID: PMC7343523.
      View in: PubMed   Mentions: 19     Fields:    Translation:HumansCells
    64. Longitudinal survey of microbiome associated with particulate matter in a megacity. Genome Biol. 2020 03 03; 21(1):55. Qin N, Liang P, Wu C, Wang G, Xu Q, Xiong X, Wang T, Zolfo M, Segata N, Qin H, Knight R, Gilbert JA, Zhu TF. PMID: 32127018; PMCID: PMC7055069.
      View in: PubMed   Mentions: 19     Fields:    Translation:PHPublic Health
    65. Effect of fructans, prebiotics and fibres on the human gut microbiome assessed by 16S rRNA-based approaches: a review. Benef Microbes. 2020 Mar 27; 11(2):101-129. Swanson KS, de Vos WM, Martens EC, Gilbert JA, Menon RS, Soto-Vaca A, Hautvast J, Meyer PD, Borewicz K, Vaughan EE, Slavin JL. PMID: 32073295.
      View in: PubMed   Mentions: 26     Fields:    Translation:Humans
    66. Precision medicine in perinatal depression in light of the human microbiome. Psychopharmacology (Berl). 2020 Apr; 237(4):915-941. Peñalver Bernabé B, Maki PM, Dowty SM, Salas M, Cralle L, Shah Z, Gilbert JA. PMID: 32065252.
      View in: PubMed   Mentions: 7     Fields:    Translation:Humans
    67. Microbiota composition modulates inflammation and neointimal hyperplasia after arterial angioplasty. J Vasc Surg. 2020 04; 71(4):1378-1389.e3. Cason CA, Kuntz TM, Chen EB, Wun K, Nooromid MJ, Xiong L, Gottel NR, Harris KG, Morton TC, Avram MJ, Chang EB, Gilbert JA, Ho KJ. PMID: 32035769; PMCID: PMC7096256.
      View in: PubMed   Mentions: 1     Fields:    Translation:Animals
    68. Comparative Analysis of Gut Microbiota Following Changes in Training Volume Among Swimmers. Int J Sports Med. 2020 May; 41(5):292-299. Hampton-Marcell JT, Eshoo TW, Cook MD, Gilbert JA, Horswill CA, Poretsky R. PMID: 31975357.
      View in: PubMed   Mentions: 12     Fields:    Translation:Humans
    69. Comparative Analyses of Vertebrate Gut Microbiomes Reveal Convergence between Birds and Bats. mBio. 2020 01 07; 11(1). Song SJ, Sanders JG, Delsuc F, Metcalf J, Amato K, Taylor MW, Mazel F, Lutz HL, Winker K, Graves GR, Humphrey G, Gilbert JA, Hackett SJ, White KP, Skeen HR, Kurtis SM, Withrow J, Braile T, Miller M, McCracken KG, Maley JM, Ezenwa VO, Williams A, Blanton JM, McKenzie VJ, Knight R. PMID: 31911491; PMCID: PMC6946802.
      View in: PubMed   Mentions: 121     Fields:    Translation:Animals
    70. Immune Dysregulation in the Tonsillar Microenvironment of Periodic Fever, Aphthous Stomatitis, Pharyngitis, Adenitis (PFAPA) Syndrome. J Clin Immunol. 2020 01; 40(1):179-190. Luu I, Sharma A, Guaderrama M, Peru M, Nation J, Page N, Carvalho D, Magit A, Jiang W, Leuin S, Bliss M, Bothwell M, Brigger M, Kearns D, Newbury R, Pransky S, Gilbert JA, Broderick L. PMID: 31807979; PMCID: PMC7085444.
      View in: PubMed   Mentions: 10     Fields:    Translation:HumansCells
    71. The Future of Microbiome-Based Therapeutics in Clinical Applications. Clin Pharmacol Ther. 2020 01; 107(1):123-128. Sharma A, Das P, Buschmann M, Gilbert JA. PMID: 31617205.
      View in: PubMed   Mentions: 11     Fields:    Translation:HumansAnimals
    72. Ecology and Host Identity Outweigh Evolutionary History in Shaping the Bat Microbiome. mSystems. 2019 Nov 12; 4(6). Lutz HL, Jackson EW, Webala PW, Babyesiza WS, Kerbis Peterhans JC, Demos TC, Patterson BD, Gilbert JA. PMID: 31719140; PMCID: PMC7407897.
      View in: PubMed   Mentions: 41     Fields:    
    73. Analysis of gut microbiome, nutrition and immune status in autism spectrum disorder: a case-control study in Ecuador. Gut Microbes. 2020 05 03; 11(3):453-464. Zurita MF, Cárdenas PA, Sandoval ME, Peña MC, Fornasini M, Flores N, Monaco MH, Berding K, Donovan SM, Kuntz T, Gilbert JA, Baldeón ME. PMID: 31530087; PMCID: PMC7524316.
      View in: PubMed   Mentions: 21     Fields:    Translation:Humans
    74. The Origin, Succession, and Predicted Metabolism of Bacterial Communities Associated with Leaf Decomposition. mBio. 2019 09 03; 10(5). Jackrel SL, Gilbert JA, Wootton JT. PMID: 31481384; PMCID: PMC6722416.
      View in: PubMed   Mentions: 3     Fields:    Translation:AnimalsCellsPHPublic Health
    75. Microbial Exchange via Fomites and Implications for Human Health. Curr Pollut Rep. 2019; 5(4):198-213. Stephens B, Azimi P, Thoemmes MS, Heidarinejad M, Allen JG, Gilbert JA. PMID: 34171005; PMCID: PMC7149182.
      View in: PubMed   Mentions: 47  
    76. Age and Mothers: Potent Influences of Children's Skin Microbiota. J Invest Dermatol. 2019 12; 139(12):2497-2505.e6. Zhu T, Liu X, Kong FQ, Duan YY, Yee AL, Kim M, Galzote C, Gilbert JA, Quan ZX. PMID: 31420081; PMCID: PMC6874717.
      View in: PubMed   Mentions: 24     Fields:    Translation:HumansCells
    77. Mice Fed an Obesogenic Western Diet, Administered Antibiotics, and Subjected to a Sterile Surgical Procedure Develop Lethal Septicemia with Multidrug-Resistant Pathobionts. mBio. 2019 07 30; 10(4). Hyoju SK, Zaborin A, Keskey R, Sharma A, Arnold W, van den Berg F, Kim SM, Gottel N, Bethel C, Charnot-Katsikas A, Jianxin P, Adriaansens C, Papazian E, Gilbert JA, Zaborina O, Alverdy JC. PMID: 31363025; PMCID: PMC6667615.
      View in: PubMed   Mentions: 20     Fields:    Translation:Animals
    78. Microbial Similarity between Students in a Common Dormitory Environment Reveals the Forensic Potential of Individual Microbial Signatures. mBio. 2019 07 30; 10(4). Richardson M, Gottel N, Gilbert JA, Lax S. PMID: 31363029; PMCID: PMC6667619.
      View in: PubMed   Mentions: 17     Fields:    Translation:Humans
    79. The human microbiota is associated with cardiometabolic risk across the epidemiologic transition. PLoS One. 2019; 14(7):e0215262. Fei N, Bernabé BP, Lie L, Baghdan D, Bedu-Addo K, Plange-Rhule J, Forrester TE, Lambert EV, Bovet P, Gottel N, Riesen W, Korte W, Luke A, Kliethermes SA, Layden BT, Gilbert JA, Dugas LR. PMID: 31339887; PMCID: PMC6656343.
      View in: PubMed   Mentions: 22     Fields:    Translation:Humans
    80. Associations between fungal and bacterial microbiota of airways and asthma endotypes. J Allergy Clin Immunol. 2019 11; 144(5):1214-1227.e7. Sharma A, Laxman B, Naureckas ET, Hogarth DK, Sperling AI, Solway J, Ober C, Gilbert JA, White SR. PMID: 31279011; PMCID: PMC6842419.
      View in: PubMed   Mentions: 58     Fields:    Translation:HumansAnimalsCells
    81. Quantifying and Understanding Well-to-Well Contamination in Microbiome Research. mSystems. 2019 Jun 25; 4(4). Minich JJ, Sanders JG, Amir A, Humphrey G, Gilbert JA, Knight R. PMID: 31239396; PMCID: PMC6593221.
      View in: PubMed   Mentions: 75     Fields:    
    82. Draft Genome Sequence of Rhodococcus sp. Strain ATCC 49988, a Quinoline-Degrading Bacterium. Microbiol Resour Announc. 2019 Jun 20; 8(25). Gupta N, Skinner KA, Summers ZM, Edirisinghe JN, Faria JP, Marshall CW, Sharma A, Gottel NR, Gilbert JA, Henry CS, O'Loughlin EJ. PMID: 31221646; PMCID: PMC6588367.
      View in: PubMed   Mentions: 2  
    83. Concurrent measurement of microbiome and allergens in the air of bedrooms of allergy disease patients in the Chicago area. Microbiome. 2019 06 03; 7(1):82. Richardson M, Gottel N, Gilbert JA, Gordon J, Gandhi P, Reboulet R, Hampton-Marcell JT. PMID: 31159879; PMCID: PMC6547563.
      View in: PubMed   Mentions: 13     Fields:    Translation:HumansAnimalsCellsPHPublic Health
    84. Community ecology as a framework for human microbiome research. Nat Med. 2019 06; 25(6):884-889. Gilbert JA, Lynch SV. PMID: 31133693; PMCID: PMC7410146.
      View in: PubMed   Mentions: 50     Fields:    Translation:Humans
    85. Triplicate PCR reactions for 16S rRNA gene amplicon sequencing are unnecessary. Biotechniques. 2019 07; 67(1):29-32. Marotz C, Sharma A, Humphrey G, Gottel N, Daum C, Gilbert JA, Eloe-Fadrosh E, Knight R. PMID: 31124709; PMCID: PMC7030937.
      View in: PubMed   Mentions: 25     Fields:    Translation:Cells
    86. Sex-specific effects of microbiome perturbations on cerebral Aβ amyloidosis and microglia phenotypes. J Exp Med. 2019 07 01; 216(7):1542-1560. Dodiya HB, Kuntz T, Shaik SM, Baufeld C, Leibowitz J, Zhang X, Gottel N, Zhang X, Butovsky O, Gilbert JA, Sisodia SS. PMID: 31097468; PMCID: PMC6605759.
      View in: PubMed   Mentions: 109     Fields:    Translation:AnimalsCells
    87. A Simple Microbiome in the European Common Cuttlefish, Sepia officinalis. mSystems. 2019 Jul-Aug; 4(4). Lutz HL, Ramírez-Puebla ST, Abbo L, Durand A, Schlundt C, Gottel NR, Sjaarda AK, Hanlon RT, Gilbert JA, Mark Welch JL. PMID: 31098396; PMCID: PMC6517690.
      View in: PubMed   Mentions: 8     Fields:    
    88. Impacts of indoor surface finishes on bacterial viability. Indoor Air. 2019 07; 29(4):551-562. Hu J, Ben Maamar S, Glawe AJ, Gottel N, Gilbert JA, Hartmann EM. PMID: 30980566; PMCID: PMC6851865.
      View in: PubMed   Mentions: 15     Fields:    Translation:CellsPHPublic Health
    89. Early-Career Scientists Shaping the World. mSystems. 2019 May 07; 4(3). Cristea IM, Dorrestein PC, Eisen JA, Gilbert JA, Huber JA, Jansson JK, Knight R, Pollard KS, Raes J, Silver PA, Webster NS, Xu J. PMID: 31219787; PMCID: PMC6533378.
      View in: PubMed   Mentions:    Fields:    
    90. Pharmacomicrobiomics: The Holy Grail to Variability in Drug Response? Clin Pharmacol Ther. 2019 08; 106(2):317-328. Sharma A, Buschmann MM, Gilbert JA. PMID: 30937887.
      View in: PubMed   Mentions: 26     Fields:    Translation:Humans
    91. Consent insufficient for data release-Response. Science. 2019 05 03; 364(6439):446. Amann RI, Baichoo S, Blencowe BJ, Bork P, Borodovsky M, Brooksbank C, Chain PSG, Colwell RR, Daffonchio DG, Danchin A, de Lorenzo V, Dorrestein PC, Finn RD, Fraser CM, Gilbert JA, Hallam SJ, Hugenholtz P, Ioannidis JPA, Jansson JK, Kim JF, Klenk HP, Klotz MG, Knight R, Konstantinidis KT, Kyrpides NC, Mason CE, McHardy AC, Meyer F, Ouzounis CA, Patrinos AAN, Podar M, Pollard KS, Ravel J, Muñoz AR, Roberts RJ, Rosselló-Móra R, Sansone SA, Schloss PD, Schriml LM, Setubal JC, Sorek R, Stevens RL, Tiedje JM, Turjanski A, Tyson GW, Ussery DW, Weinstock GM, White O, Whitman WB, Xenarios I. PMID: 31048484.
      View in: PubMed   Mentions:    Fields:    
    92. Longitudinal homogenization of the microbiome between both occupants and the built environment in a cohort of United States Air Force Cadets. Microbiome. 2019 05 02; 7(1):70. Sharma A, Richardson M, Cralle L, Stamper CE, Maestre JP, Stearns-Yoder KA, Postolache TT, Bates KL, Kinney KA, Brenner LA, Lowry CA, Gilbert JA, Hoisington AJ. PMID: 31046835; PMCID: PMC6498636.
      View in: PubMed   Mentions: 22     Fields:    Translation:HumansCellsPHPublic Health
    93. Agricultural Risk Factors Influence Microbial Ecology in Honghu Lake. Genomics Proteomics Bioinformatics. 2019 02; 17(1):76-90. Han M, Dsouza M, Zhou C, Li H, Zhang J, Chen C, Yao Q, Zhong C, Zhou H, Gilbert JA, Wang Z, Ning K. PMID: 31026580; PMCID: PMC6520916.
      View in: PubMed   Mentions: 8     Fields:    Translation:Animals
    94. Microbial and metabolic succession on common building materials under high humidity conditions. Nat Commun. 2019 04 16; 10(1):1767. Lax S, Cardona C, Zhao D, Winton VJ, Goodney G, Gao P, Gottel N, Hartmann EM, Henry C, Thomas PM, Kelley ST, Stephens B, Gilbert JA. PMID: 30992445; PMCID: PMC6467912.
      View in: PubMed   Mentions: 18     Fields:    Translation:AnimalsCellsPHPublic Health
    95. Genomic Characterization and Virulence Potential of Two Fusarium oxysporum Isolates Cultured from the International Space Station. mSystems. 2019 Mar-Apr; 4(2). Urbaniak C, van Dam P, Zaborin A, Zaborina O, Gilbert JA, Torok T, Wang CCC, Venkateswaran K. PMID: 30944876; PMCID: PMC6426649.
      View in: PubMed   Mentions: 17     Fields:    
    96. Longitudinal Microbiome Composition and Stability Correlate with Increased Weight and Length of Very-Low-Birth-Weight Infants. mSystems. 2019 Jan-Feb; 4(1). Yee AL, Miller E, Dishaw LJ, Gordon JM, Ji M, Dutra S, Ho TTB, Gilbert JA, Groer M. PMID: 30834328; PMCID: PMC6392092.
      View in: PubMed   Mentions: 28     Fields:    
    97. Toward unrestricted use of public genomic data. Science. 2019 01 25; 363(6425):350-352. Amann RI, Baichoo S, Blencowe BJ, Bork P, Borodovsky M, Brooksbank C, Chain PSG, Colwell RR, Daffonchio DG, Danchin A, de Lorenzo V, Dorrestein PC, Finn RD, Fraser CM, Gilbert JA, Hallam SJ, Hugenholtz P, Ioannidis JPA, Jansson JK, Kim JF, Klenk HP, Klotz MG, Knight R, Konstantinidis KT, Kyrpides NC, Mason CE, McHardy AC, Meyer F, Ouzounis CA, Patrinos AAN, Podar M, Pollard KS, Ravel J, Muñoz AR, Roberts RJ, Rosselló-Móra R, Sansone SA, Schloss PD, Schriml LM, Setubal JC, Sorek R, Stevens RL, Tiedje JM, Turjanski A, Tyson GW, Ussery DW, Weinstock GM, White O, Whitman WB, Xenarios I. PMID: 30679363.
      View in: PubMed   Mentions: 18     Fields:    Translation:Humans
    98. Bacterial and Archaeal Viruses of Himalayan Hot Springs at Manikaran Modulate Host Genomes. Front Microbiol. 2018; 9:3095. Sharma A, Schmidt M, Kiesel B, Mahato NK, Cralle L, Singh Y, Richnow HH, Gilbert JA, Arnold W, Lal R. PMID: 30619174; PMCID: PMC6302217.
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    99. GABA-modulating bacteria of the human gut microbiota. Nat Microbiol. 2019 03; 4(3):396-403. Strandwitz P, Kim KH, Terekhova D, Liu JK, Sharma A, Levering J, McDonald D, Dietrich D, Ramadhar TR, Lekbua A, Mroue N, Liston C, Stewart EJ, Dubin MJ, Zengler K, Knight R, Gilbert JA, Clardy J, Lewis K. PMID: 30531975; PMCID: PMC6384127.
      View in: PubMed   Mentions: 330     Fields:    Translation:HumansCells
    100. Enteric dysbiosis and fecal calprotectin expression in premature infants. Pediatr Res. 2019 02; 85(3):361-368. Ho TTB, Groer MW, Kane B, Yee AL, Torres BA, Gilbert JA, Maheshwari A. PMID: 30631136; PMCID: PMC6377820.
      View in: PubMed   Mentions: 15     Fields:    Translation:HumansCells
    101. Gut microbial features can predict host phenotype response to protein deficiency. Physiol Rep. 2018 Dec; 6(23):e13932. Navarro G, Sharma A, Dugas LR, Forrester T, Gilbert JA, Layden BT. PMID: 30516001; PMCID: PMC6280014.
      View in: PubMed   Mentions: 10     Fields:    Translation:Animals
    102. Decreased microbial co-occurrence network stability and SCFA receptor level correlates with obesity in African-origin women. Sci Rep. 2018 11 20; 8(1):17135. Dugas LR, Bernabé BP, Priyadarshini M, Fei N, Park SJ, Brown L, Plange-Rhule J, Nelson D, Toh EC, Gao X, Dong Q, Sun J, Kliethermes S, Gottel N, Luke A, Gilbert JA, Layden BT. PMID: 30459320; PMCID: PMC6244201.
      View in: PubMed   Mentions: 29     Fields:    Translation:Humans
    103. Microbiology of the built environment. Nat Rev Microbiol. 2018 11; 16(11):661-670. Gilbert JA, Stephens B. PMID: 30127345.
      View in: PubMed   Mentions: 77     Fields:    Translation:HumansAnimalsCellsPHPublic Health
    104. Existing Climate Change Will Lead to Pronounced Shifts in the Diversity of Soil Prokaryotes. mSystems. 2018 Sep-Oct; 3(5). Ladau J, Shi Y, Jing X, He JS, Chen L, Lin X, Fierer N, Gilbert JA, Pollard KS, Chu H. PMID: 30374458; PMCID: PMC6199470.
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    105. Phylogenetic imprint of woody plants on the soil mycobiome in natural mountain forests of eastern China. ISME J. 2019 03; 13(3):686-697. Yang T, Tedersoo L, Soltis PS, Soltis DE, Gilbert JA, Sun M, Shi Y, Wang H, Li Y, Zhang J, Chen Z, Lin H, Zhao Y, Fu C, Chu H. PMID: 30353037; PMCID: PMC6461945.
      View in: PubMed   Mentions: 19     Fields:    Translation:AnimalsPHPublic Health
    106. The chemodiversity of paddy soil dissolved organic matter correlates with microbial community at continental scales. Microbiome. 2018 10 19; 6(1):187. Li HY, Wang H, Wang HT, Xin PY, Xu XH, Ma Y, Liu WP, Teng CY, Jiang CL, Lou LP, Arnold W, Cralle L, Zhu YG, Chu JF, Gilbert JA, Zhang ZJ. PMID: 30340631; PMCID: PMC6195703.
      View in: PubMed   Mentions: 25     Fields:    Translation:AnimalsCellsPHPublic Health
    107. Preserving microbial diversity. Science. 2018 Oct 05; 362(6410):33-34. Bello MGD, Knight R, Gilbert JA, Blaser MJ. PMID: 30287652.
      View in: PubMed   Mentions: 50     Fields:    Translation:Humans
    108. Dichotomous development of the gut microbiome in preterm infants. Microbiome. 2018 09 12; 6(1):157. Ho TTB, Groer MW, Kane B, Yee AL, Torres BA, Gilbert JA, Maheshwari A. PMID: 30208950; PMCID: PMC6136210.
      View in: PubMed   Mentions: 39     Fields:    Translation:HumansCells
    109. Microbial exposure and human health. Curr Opin Microbiol. 2018 08; 44:79-87. Sharma A, Gilbert JA. PMID: 30195150.
      View in: PubMed   Mentions: 14     Fields:    Translation:HumansAnimalsCells
    110. Gut microbiota composition and butyrate production in children affected by non-IgE-mediated cow's milk allergy. Sci Rep. 2018 08 21; 8(1):12500. Berni Canani R, De Filippis F, Nocerino R, Paparo L, Di Scala C, Cosenza L, Della Gatta G, Calignano A, De Caro C, Laiola M, Gilbert JA, Ercolini D. PMID: 30131575; PMCID: PMC6104073.
      View in: PubMed   Mentions: 50     Fields:    Translation:HumansAnimalsCells
    111. Gut microbiota, short chain fatty acids, and obesity across the epidemiologic transition: the METS-Microbiome study protocol. BMC Public Health. 2018 08 06; 18(1):978. Dugas LR, Lie L, Plange-Rhule J, Bedu-Addo K, Bovet P, Lambert EV, Forrester TE, Luke A, Gilbert JA, Layden BT. PMID: 30081857; PMCID: PMC6090745.
      View in: PubMed   Mentions: 17     Fields:    Translation:Humans
    112. Genetic correlation network prediction of forest soil microbial functional organization. ISME J. 2018 10; 12(10):2492-2505. Ma B, Zhao K, Lv X, Su W, Dai Z, Gilbert JA, Brookes PC, Faust K, Xu J. PMID: 30046166; PMCID: PMC6155114.
      View in: PubMed   Mentions: 18     Fields:    Translation:PHPublic Health
    113. Dysbiosis in Children Born by Caesarean Section. Ann Nutr Metab. 2018; 73 Suppl 3:24-32. Salas Garcia MC, Yee AL, Gilbert JA, Dsouza M. PMID: 30041170.
      View in: PubMed   Mentions: 9     Fields:    Translation:Humans
    114. Corrigendum: Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea. Nat Biotechnol. 2018 07 06; 36(7):660. Bowers RM, Kyrpides NC, Stepanauskas R, Harmon-Smith M, Doud D, Reddy TBK, Schulz F, Jarett J, Rivers AR, Eloe-Fadrosh EA, Tringe SG, Ivanova NN, Copeland A, Clum A, Becraft ED, Malmstrom RR, Birren B, Podar M, Bork P, Weinstock GM, Garrity GM, Dodsworth JA, Yooseph S, Sutton G, Glöckner FO, Gilbert JA, Nelson WC, Hallam SJ, Jungbluth SP, Ettema TJG, Tighe S, Konstantinidis KT, Liu WT, Baker BJ, Rattei T, Eisen JA, Hedlund B, McMahon KD, Fierer N, Knight R, Finn R, Cochrane G, Karsch-Mizrachi I, Tyson GW, Rinke C, Genome Standards Consortium, Lapidus A, Meyer F, Yilmaz P, Parks DH, Eren AM, Schriml L, Banfield JF, Hugenholtz P, Woyke T. PMID: 29979671; PMCID: PMC7608355.
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    115. Metagenomic analysis of basal ice from an Alaskan glacier. Microbiome. 2018 07 05; 6(1):123. Kayani MUR, Doyle SM, Sangwan N, Wang G, Gilbert JA, Christner BC, Zhu TF. PMID: 29976249; PMCID: PMC6034282.
      View in: PubMed   Mentions: 7     Fields:    Translation:Cells
    116. Environmental Sources of Bacteria Differentially Influence Host-Associated Microbial Dynamics. mSystems. 2018 May-Jun; 3(3). Cardona C, Lax S, Larsen P, Stephens B, Hampton-Marcell J, Edwardson CF, Henry C, Van Bonn B, Gilbert JA. PMID: 29854953; PMCID: PMC5974334.
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    117. American Gut: an Open Platform for Citizen Science Microbiome Research. mSystems. 2018 May-Jun; 3(3). McDonald D, Hyde E, Debelius JW, Morton JT, Gonzalez A, Ackermann G, Aksenov AA, Behsaz B, Brennan C, Chen Y, DeRight Goldasich L, Dorrestein PC, Dunn RR, Fahimipour AK, Gaffney J, Gilbert JA, Gogul G, Green JL, Hugenholtz P, Humphrey G, Huttenhower C, Jackson MA, Janssen S, Jeste DV, Jiang L, Kelley ST, Knights D, Kosciolek T, Ladau J, Leach J, Marotz C, Meleshko D, Melnik AV, Metcalf JL, Mohimani H, Montassier E, Navas-Molina J, Nguyen TT, Peddada S, Pevzner P, Pollard KS, Rahnavard G, Robbins-Pianka A, Sangwan N, Shorenstein J, Smarr L, Song SJ, Spector T, Swafford AD, Thackray VG, Thompson LR, Tripathi A, Vázquez-Baeza Y, Vrbanac A, Wischmeyer P, Wolfe E, Zhu Q, American Gut Consortium , Knight R. PMID: 29795809; PMCID: PMC5954204.
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    118. Soil Bacterial Diversity Is Associated with Human Population Density in Urban Greenspaces. Environ Sci Technol. 2018 05 01; 52(9):5115-5124. Wang H, Cheng M, Dsouza M, Weisenhorn P, Zheng T, Gilbert JA. PMID: 29624051.
      View in: PubMed   Mentions: 15     Fields:    Translation:HumansCellsPHPublic Health
    119. Earth Microbiome Project and Global Systems Biology. mSystems. 2018 May-Jun; 3(3). Gilbert JA, Jansson JK, Knight R. PMID: 29657969; PMCID: PMC5893859.
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    120. Current understanding of the human microbiome. Nat Med. 2018 04 10; 24(4):392-400. Gilbert JA, Blaser MJ, Caporaso JG, Jansson JK, Lynch SV, Knight R. PMID: 29634682; PMCID: PMC7043356.
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    121. Salinity is a key factor driving the nitrogen cycling in the mangrove sediment. Sci Total Environ. 2018 Aug 01; 631-632:1342-1349. Wang H, Gilbert JA, Zhu Y, Yang X. PMID: 29727958.
      View in: PubMed   Mentions: 22     Fields:    Translation:CellsPHPublic Health
    122. Early-Career Systems Microbiology Scientists. mSystems. 2018 Mar-Apr; 3(2). Gilbert JA. PMID: 29556547; PMCID: PMC5853184.
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    123. Correction: A microbial survey of the International Space Station (ISS). PeerJ. 2018; 5. Lang JM, Coil DA, Neches RY, Brown WE, Cavalier D, Severance M, Hampton-Marcell JT, Gilbert JA, Eisen JA. PMID: 29498380; PMCID: PMC5828678.
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    124. Systems biology of the human microbiome. Curr Opin Biotechnol. 2018 06; 51:146-153. Peñalver Bernabé B, Cralle L, Gilbert JA. PMID: 29453029.
      View in: PubMed   Mentions: 17     Fields:    Translation:HumansCells
    125. Corrigendum: Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea. Nat Biotechnol. 2018 02 06; 36(2):196. Bowers RM, Kyrpides NC, Stepanauskas R, Harmon-Smith M, Doud D, Reddy TBK, Schulz F, Jarett J, Rivers AR, Eloe-Fadrosh EA, Tringe SG, Ivanova NN, Copeland A, Clum A, Becraft ED, Malmstrom RR, Birren B, Podar M, Bork P, Weinstock GM, Garrity GM, Dodsworth JA, Yooseph S, Sutton G, Glöckner FO, Gilbert JA, Nelson WC, Hallam SJ, Jungbluth SP, Ettema TJG, Tighe S, Konstantinidis KT, Liu WT, Baker BJ, Rattei T, Eisen JA, Hedlund B, McMahon KD, Fierer N, Knight R, Finn R, Cochrane G, Karsch-Mizrachi I, Tyson GW, Rinke C, Genome Standards Consortium, Lapidus A, Meyer F, Yilmaz P, Parks DH, Eren AM, Schriml L, Banfield JF, Hugenholtz P, Woyke T. PMID: 29406516; PMCID: PMC7609277.
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    126. A microbial survey of the International Space Station (ISS). PeerJ. 2017; 5:e4029. Lang JM, Coil DA, Neches RY, Brown WE, Cavalier D, Severance M, Hampton-Marcell JT, Gilbert JA, Eisen JA. PMID: 29492330; PMCID: PMC5827671.
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    127. A communal catalogue reveals Earth's multiscale microbial diversity. Nature. 2017 11 23; 551(7681):457-463. Thompson LR, Sanders JG, McDonald D, Amir A, Ladau J, Locey KJ, Prill RJ, Tripathi A, Gibbons SM, Ackermann G, Navas-Molina JA, Janssen S, Kopylova E, Vázquez-Baeza Y, González A, Morton JT, Mirarab S, Zech Xu Z, Jiang L, Haroon MF, Kanbar J, Zhu Q, Jin Song S, Kosciolek T, Bokulich NA, Lefler J, Brislawn CJ, Humphrey G, Owens SM, Hampton-Marcell J, Berg-Lyons D, McKenzie V, Fierer N, Fuhrman JA, Clauset A, Stevens RL, Shade A, Pollard KS, Goodwin KD, Jansson JK, Gilbert JA, Knight R, Earth Microbiome Project Consortium. PMID: 29088705; PMCID: PMC6192678.
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    128. Microbial diversity in an intensively managed landscape is structured by landscape connectivity. FEMS Microbiol Ecol. 2017 10 01; 93(10). Griffin JS, Lu N, Sangwan N, Li A, Dsouza M, Stumpf AJ, Sevilla T, Culotti A, Keefer LL, Kelly JJ, Gilbert JA, Wells GF, Packman AI. PMID: 28961974.
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    129. Specific Signatures of the Gut Microbiota and Increased Levels of Butyrate in Children Treated with Fermented Cow's Milk Containing Heat-Killed Lactobacillus paracasei CBA L74. Appl Environ Microbiol. 2017 10 01; 83(19). Berni Canani R, De Filippis F, Nocerino R, Laiola M, Paparo L, Calignano A, De Caro C, Coretti L, Chiariotti L, Gilbert JA, Ercolini D. PMID: 28733284; PMCID: PMC5601345.
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    130. Metabolic Reconstruction and Modeling Microbial Electrosynthesis. Sci Rep. 2017 08 21; 7(1):8391. Marshall CW, Ross DE, Handley KM, Weisenhorn PB, Edirisinghe JN, Henry CS, Gilbert JA, May HD, Norman RS. PMID: 28827682; PMCID: PMC5566340.
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    131. Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea. Nat Biotechnol. 2017 Aug 08; 35(8):725-731. Bowers RM, Kyrpides NC, Stepanauskas R, Harmon-Smith M, Doud D, Reddy TBK, Schulz F, Jarett J, Rivers AR, Eloe-Fadrosh EA, Tringe SG, Ivanova NN, Copeland A, Clum A, Becraft ED, Malmstrom RR, Birren B, Podar M, Bork P, Weinstock GM, Garrity GM, Dodsworth JA, Yooseph S, Sutton G, Glöckner FO, Gilbert JA, Nelson WC, Hallam SJ, Jungbluth SP, Ettema TJG, Tighe S, Konstantinidis KT, Liu WT, Baker BJ, Rattei T, Eisen JA, Hedlund B, McMahon KD, Fierer N, Knight R, Finn R, Cochrane G, Karsch-Mizrachi I, Tyson GW, Rinke C, Genome Standards Consortium, Lapidus A, Meyer F, Yilmaz P, Parks DH, Eren AM, Schriml L, Banfield JF, Hugenholtz P, Woyke T. PMID: 28787424; PMCID: PMC6436528.
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    132. Metabolic and spatio-taxonomic response of uncultivated seafloor bacteria following the Deepwater Horizon oil spill. ISME J. 2017 11; 11(11):2569-2583. Handley KM, Piceno YM, Hu P, Tom LM, Mason OU, Andersen GL, Jansson JK, Gilbert JA. PMID: 28777379; PMCID: PMC5649166.
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    133. Taxonomic and functional patterns across soil microbial communities of global biomes. Sci Total Environ. 2017 Dec 31; 609:1064-1074. Noronha MF, Lacerda Júnior GV, Gilbert JA, de Oliveira VM. PMID: 28787780.
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    134. Erratum for Linz et al., "Bacterial Community Composition and Dynamics Spanning Five Years in Freshwater Bog Lakes". mSphere. 2017 Jul-Aug; 2(4). Linz AM, Crary BC, Shade A, Owens S, Gilbert JA, Knight R, McMahon KD. PMID: 28744483; PMCID: PMC5518271.
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    135. Bacterial Community Composition and Dynamics Spanning Five Years in Freshwater Bog Lakes. mSphere. 2017 May-Jun; 2(3). Linz AM, Crary BC, Shade A, Owens S, Gilbert JA, Knight R, McMahon KD. PMID: 28680968; PMCID: PMC5489657.
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    136. Significant Impacts of Increasing Aridity on the Arid Soil Microbiome. mSystems. 2017 May-Jun; 2(3). Neilson JW, Califf K, Cardona C, Copeland A, van Treuren W, Josephson KL, Knight R, Gilbert JA, Quade J, Caporaso JG, Maier RM. PMID: 28593197; PMCID: PMC5451488.
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    137. Size, Composition, and Source Profiles of Inhalable Bioaerosols from Colorado Dairies. Environ Sci Technol. 2017 Jun 06; 51(11):6430-6440. Schaeffer JW, Reynolds S, Magzamen S, VanDyke A, Gottel NR, Gilbert JA, Owens SM, Hampton-Marcell JT, Volckens J. PMID: 28492313; PMCID: PMC9552963.
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    138. Bacterial colonization and succession in a newly opened hospital. Sci Transl Med. 2017 05 24; 9(391). Lax S, Sangwan N, Smith D, Larsen P, Handley KM, Richardson M, Guyton K, Krezalek M, Shogan BD, Defazio J, Flemming I, Shakhsheer B, Weber S, Landon E, Garcia-Houchins S, Siegel J, Alverdy J, Knight R, Stephens B, Gilbert JA. PMID: 28539477; PMCID: PMC5706123.
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    139. Comparative Genomic Analysis Reveals Habitat-Specific Genes and Regulatory Hubs within the Genus Novosphingobium. mSystems. 2017 May-Jun; 2(3). Kumar R, Verma H, Haider S, Bajaj A, Sood U, Ponnusamy K, Nagar S, Shakarad MN, Negi RK, Singh Y, Khurana JP, Gilbert JA, Lal R. PMID: 28567447; PMCID: PMC5443232.
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    140. Alpine soil carbon is vulnerable to rapid microbial decomposition under climate cooling. ISME J. 2017 09; 11(9):2102-2111. Wu L, Yang Y, Wang S, Yue H, Lin Q, Hu Y, He Z, Van Nostrand JD, Hale L, Li X, Gilbert JA, Zhou J. PMID: 28534876; PMCID: PMC5563962.
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    141. The Microbiome-Mitochondrion Connection: Common Ancestries, Common Mechanisms, Common Goals. mSystems. 2017 May-Jun; 2(3). Franco-Obregón A, Gilbert JA. PMID: 28497122; PMCID: PMC5425687.
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    142. Correction for Gonzalez et al., "Migraines Are Correlated with Higher Levels of Nitrate-, Nitrite-, and Nitric Oxide-Reducing Oral Microbes in the American Gut Project Cohort". mSystems. 2017 Mar-Apr; 2(2). Gonzalez A, Hyde E, Sangwan N, Gilbert JA, Viirre E, Knight R. PMID: 28428981; PMCID: PMC5388783.
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    143. Invasive Plants Rapidly Reshape Soil Properties in a Grassland Ecosystem. mSystems. 2017 Mar-Apr; 2(2). Gibbons SM, Lekberg Y, Mummey DL, Sangwan N, Ramsey PW, Gilbert JA. PMID: 28289729; PMCID: PMC5340861.
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    144. The human microbiome: an emerging tool in forensics. Microb Biotechnol. 2017 03; 10(2):228-230. Hampton-Marcell JT, Lopez JV, Gilbert JA. PMID: 28244273; PMCID: PMC5328825.
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    145. Distinct Biogeographic Patterns for Archaea, Bacteria, and Fungi along the Vegetation Gradient at the Continental Scale in Eastern China. mSystems. 2017 Jan-Feb; 2(1). Ma B, Dai Z, Wang H, Dsouza M, Liu X, He Y, Wu J, Rodrigues JL, Gilbert JA, Brookes PC, Xu J. PMID: 28191504; PMCID: PMC5296412.
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    146. Identifying the plant-associated microbiome across aquatic and terrestrial environments: the effects of amplification method on taxa discovery. Mol Ecol Resour. 2017 Sep; 17(5):931-942. Jackrel SL, Owens SM, Gilbert JA, Pfister CA. PMID: 27997751.
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    147. The microbiome as a source of new enterprises and job creation: Considering clinical faecal and synthetic microbiome transplants and therapeutic regulation. Microb Biotechnol. 2017 01; 10(1):4-5. van der Lelie D, Taghavi S, Henry C, Gilbert JA. PMID: 28052560; PMCID: PMC5270749.
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    148. Disturbance Regimes Predictably Alter Diversity in an Ecologically Complex Bacterial System. mBio. 2016 12 20; 7(6). Gibbons SM, Scholz M, Hutchison AL, Dinner AR, Gilbert JA, Coleman ML. PMID: 27999158; PMCID: PMC5181773.
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    149. Genome reduction in an abundant and ubiquitous soil bacterium 'Candidatus Udaeobacter copiosus'. Nat Microbiol. 2016 Oct 31; 2:16198. Brewer TE, Handley KM, Carini P, Gilbert JA, Fierer N. PMID: 27798560.
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    150. Printing-Assisted Surface Modifications of Patterned Ultrafiltration Membranes. ACS Appl Mater Interfaces. 2016 Nov 09; 8(44):30271-30280. Wardrip NC, Dsouza M, Urgun-Demirtas M, Snyder SW, Gilbert JA, Arnusch CJ. PMID: 27749035.
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    151. Migraines Are Correlated with Higher Levels of Nitrate-, Nitrite-, and Nitric Oxide-Reducing Oral Microbes in the American Gut Project Cohort. mSystems. 2016 Sep-Oct; 1(5). Gonzalez A, Hyde E, Sangwan N, Gilbert JA, Viirre E, Knight R. PMID: 27822557; PMCID: PMC5080405.
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    152. Fungal community composition in soils subjected to long-term chemical fertilization is most influenced by the type of organic matter. Environ Microbiol. 2016 12; 18(12):5137-5150. Sun R, Dsouza M, Gilbert JA, Guo X, Wang D, Guo Z, Ni Y, Chu H. PMID: 27581342.
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    153. Innate Immunity and Asthma Risk in Amish and Hutterite Farm Children. N Engl J Med. 2016 Aug 04; 375(5):411-421. Stein MM, Hrusch CL, Gozdz J, Igartua C, Pivniouk V, Murray SE, Ledford JG, Marques Dos Santos M, Anderson RL, Metwali N, Neilson JW, Maier RM, Gilbert JA, Holbreich M, Thorne PS, Martinez FD, von Mutius E, Vercelli D, Ober C, Sperling AI. PMID: 27518660; PMCID: PMC5137793.
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    154. The Oral and Skin Microbiomes of Captive Komodo Dragons Are Significantly Shared with Their Habitat. mSystems. 2016 Jul-Aug; 1(4). Hyde ER, Navas-Molina JA, Song SJ, Kueneman JG, Ackermann G, Cardona C, Humphrey G, Boyer D, Weaver T, Mendelson JR, McKenzie VJ, Gilbert JA, Knight R. PMID: 27822543; PMCID: PMC5069958.
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    155. The antibiotic resistome of swine manure is significantly altered by association with the Musca domestica larvae gut microbiome. ISME J. 2017 01; 11(1):100-111. Wang H, Sangwan N, Li HY, Su JQ, Oyang WY, Zhang ZJ, Gilbert JA, Zhu YG, Ping F, Zhang HL. PMID: 27458785; PMCID: PMC5315468.
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    156. Microbiome-wide association studies link dynamic microbial consortia to disease. Nature. 2016 07 07; 535(7610):94-103. Gilbert JA, Quinn RA, Debelius J, Xu ZZ, Morton J, Garg N, Jansson JK, Dorrestein PC, Knight R. PMID: 27383984.
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    157. Differential Functional Constraints Cause Strain-Level Endemism in Polynucleobacter Populations. mSystems. 2016 May-Jun; 1(3). Sangwan N, Zarraonaindia I, Hampton-Marcell JT, Ssegane H, Eshoo TW, Rijal G, Negri MC, Gilbert JA. PMID: 27822527; PMCID: PMC5069759.
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    158. (Meta)genomic insights into the pathogenome of Cellulosimicrobium cellulans. Sci Rep. 2016 05 06; 6:25527. Sharma A, Gilbert JA, Lal R. PMID: 27151933; PMCID: PMC4858710.
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    159. Network-based metabolic analysis and microbial community modeling. Curr Opin Microbiol. 2016 06; 31:124-131. Cardona C, Weisenhorn P, Henry C, Gilbert JA. PMID: 27060776.
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    160. Spatial scale drives patterns in soil bacterial diversity. Environ Microbiol. 2016 06; 18(6):2039-51. O'Brien SL, Gibbons SM, Owens SM, Hampton-Marcell J, Johnston ER, Jastrow JD, Gilbert JA, Meyer F, Antonopoulos DA. PMID: 26914164; PMCID: PMC4919158.
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    161. Recovering complete and draft population genomes from metagenome datasets. Microbiome. 2016 Mar 08; 4:8. Sangwan N, Xia F, Gilbert JA. PMID: 26951112; PMCID: PMC4782286.
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    162. Introducing the JMBE Themed Issue on Scientific Citizenship. J Microbiol Biol Educ. 2016 Mar; 17(1):1-2. Gilbert JA, Klyczek KK, Elliott SL. PMID: 27047578; PMCID: PMC4798787.
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    163. Metatranscriptomics reveals temperature-driven functional changes in microbiome impacting cheese maturation rate. Sci Rep. 2016 Feb 25; 6:21871. De Filippis F, Genovese A, Ferranti P, Gilbert JA, Ercolini D. PMID: 26911915; PMCID: PMC4766472.
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    164. Geographic patterns of co-occurrence network topological features for soil microbiota at continental scale in eastern China. ISME J. 2016 08; 10(8):1891-901. Ma B, Wang H, Dsouza M, Lou J, He Y, Dai Z, Brookes PC, Xu J, Gilbert JA. PMID: 26771927; PMCID: PMC5029158.
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    165. A simple novel device for air sampling by electrokinetic capture. Microbiome. 2015 Dec 27; 3:79. Gordon J, Gandhi P, Shekhawat G, Frazier A, Hampton-Marcell J, Gilbert JA. PMID: 26715467; PMCID: PMC4696304.
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    166. mSystems: Learning To Love Systems. mSystems. 2016 Jan-Feb; 1(1). Gilbert JA. PMID: 27822517; PMCID: PMC5069753.
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    167. Improved Bacterial 16S rRNA Gene (V4 and V4-5) and Fungal Internal Transcribed Spacer Marker Gene Primers for Microbial Community Surveys. mSystems. 2016 Jan-Feb; 1(1). Walters W, Hyde ER, Berg-Lyons D, Ackermann G, Humphrey G, Parada A, Gilbert JA, Jansson JK, Caporaso JG, Fuhrman JA, Apprill A, Knight R. PMID: 27822518; PMCID: PMC5069754.
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    168. Tools for the Microbiome: Nano and Beyond. ACS Nano. 2016 Jan 26; 10(1):6-37. Biteen JS, Blainey PC, Cardon ZG, Chun M, Church GM, Dorrestein PC, Fraser SE, Gilbert JA, Jansson JK, Knight R, Miller JF, Ozcan A, Prather KA, Quake SR, Ruby EG, Silver PA, Taha S, van den Engh G, Weiss PS, Wong GC, Wright AT, Young TD. PMID: 26695070.
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    169. A New N-Acyl Homoserine Lactone Synthase in an Uncultured Symbiont of the Red Sea Sponge Theonella swinhoei. Appl Environ Microbiol. 2016 02 15; 82(4):1274-1285. Britstein M, Devescovi G, Handley KM, Malik A, Haber M, Saurav K, Teta R, Costantino V, Burgsdorf I, Gilbert JA, Sher N, Venturi V, Steindler L. PMID: 26655754; PMCID: PMC4751858.
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    170. Microbial community assembly and metabolic function during mammalian corpse decomposition. Science. 2016 Jan 08; 351(6269):158-62. Metcalf JL, Xu ZZ, Weiss S, Lax S, Van Treuren W, Hyde ER, Song SJ, Amir A, Larsen P, Sangwan N, Haarmann D, Humphrey GC, Ackermann G, Thompson LR, Lauber C, Bibat A, Nicholas C, Gebert MJ, Petrosino JF, Reed SC, Gilbert JA, Lynne AM, Bucheli SR, Carter DO, Knight R. PMID: 26657285.
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    171. Corticosteroid therapy and airflow obstruction influence the bronchial microbiome, which is distinct from that of bronchoalveolar lavage in asthmatic airways. J Allergy Clin Immunol. 2016 05; 137(5):1398-1405.e3. Denner DR, Sangwan N, Becker JB, Hogarth DK, Oldham J, Castillo J, Sperling AI, Solway J, Naureckas ET, Gilbert JA, White SR. PMID: 26627545; PMCID: PMC4860110.
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    172. Microbial diversity--exploration of natural ecosystems and microbiomes. Curr Opin Genet Dev. 2015 Dec; 35:66-72. Gibbons SM, Gilbert JA. PMID: 26598941; PMCID: PMC4852739.
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    173. MICROBIOME. A unified initiative to harness Earth's microbiomes. Science. 2015 Oct 30; 350(6260):507-8. Alivisatos AP, Blaser MJ, Brodie EL, Chun M, Dangl JL, Donohue TJ, Dorrestein PC, Gilbert JA, Green JL, Jansson JK, Knight R, Maxon ME, McFall-Ngai MJ, Miller JF, Pollard KS, Ruby EG, Taha SA, Unified Microbiome Initiative Consortium. PMID: 26511287.
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    174. Lactobacillus rhamnosus GG-supplemented formula expands butyrate-producing bacterial strains in food allergic infants. ISME J. 2016 Mar; 10(3):742-50. Berni Canani R, Sangwan N, Stefka AT, Nocerino R, Paparo L, Aitoro R, Calignano A, Khan AA, Gilbert JA, Nagler CR. PMID: 26394008; PMCID: PMC4817673.
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    175. The short-chain fatty acid receptor, FFA2, contributes to gestational glucose homeostasis. Am J Physiol Endocrinol Metab. 2015 Nov 15; 309(10):E840-51. Fuller M, Priyadarshini M, Gibbons SM, Angueira AR, Brodsky M, Hayes MG, Kovatcheva-Datchary P, Bäckhed F, Gilbert JA, Lowe WL, Layden BT. PMID: 26394664; PMCID: PMC4838121.
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    176. 16Stimator: statistical estimation of ribosomal gene copy numbers from draft genome assemblies. ISME J. 2016 Apr; 10(4):1020-4. Perisin M, Vetter M, Gilbert JA, Bergelson J. PMID: 26359911; PMCID: PMC4796925.
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    177. Housefly Larva Vermicomposting Efficiently Attenuates Antibiotic Resistance Genes in Swine Manure, with Concomitant Bacterial Population Changes. Appl Environ Microbiol. 2015 Nov; 81(22):7668-79. Wang H, Li H, Gilbert JA, Li H, Wu L, Liu M, Wang L, Zhou Q, Yuan J, Zhang Z. PMID: 26296728; PMCID: PMC4616931.
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    178. Stool consistency as a major confounding factor affecting microbiota composition: an ignored variable? Gut. 2016 Jan; 65(1):1-2. Gilbert JA, Alverdy J. PMID: 26187505.
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    179. Arsenic rich Himalayan hot spring metagenomics reveal genetically novel predator-prey genotypes. Environ Microbiol Rep. 2015 Dec; 7(6):812-23. Sangwan N, Lambert C, Sharma A, Gupta V, Khurana P, Khurana JP, Sockett RE, Gilbert JA, Lal R. PMID: 25953741.
      View in: PubMed   Mentions: 27     Fields:    Translation:PHPublic Health
    180. The ocean sampling day consortium. Gigascience. 2015; 4:27. Kopf A, Bicak M, Kottmann R, Schnetzer J, Kostadinov I, Lehmann K, Fernandez-Guerra A, Jeanthon C, Rahav E, Ullrich M, Wichels A, Gerdts G, Polymenakou P, Kotoulas G, Siam R, Abdallah RZ, Sonnenschein EC, Cariou T, O'Gara F, Jackson S, Orlic S, Steinke M, Busch J, Duarte B, Caçador I, Canning-Clode J, Bobrova O, Marteinsson V, Reynisson E, Loureiro CM, Luna GM, Quero GM, Löscher CR, Kremp A, DeLorenzo ME, Øvreås L, Tolman J, LaRoche J, Penna A, Frischer M, Davis T, Katherine B, Meyer CP, Ramos S, Magalhães C, Jude-Lemeilleur F, Aguirre-Macedo ML, Wang S, Poulton N, Jones S, Collin R, Fuhrman JA, Conan P, Alonso C, Stambler N, Goodwin K, Yakimov MM, Baltar F, Bodrossy L, Van De Kamp J, Frampton DM, Ostrowski M, Van Ruth P, Malthouse P, Claus S, Deneudt K, Mortelmans J, Pitois S, Wallom D, Salter I, Costa R, Schroeder DC, Kandil MM, Amaral V, Biancalana F, Santana R, Pedrotti ML, Yoshida T, Ogata H, Ingleton T, Munnik K, Rodriguez-Ezpeleta N, Berteaux-Lecellier V, Wecker P, Cancio I, Vaulot D, Bienhold C, Ghazal H, Chaouni B, Essayeh S, Ettamimi S, Zaid el H, Boukhatem N, Bouali A, Chahboune R, Barrijal S, Timinouni M, El Otmani F, Bennani M, Mea M, Todorova N, Karamfilov V, Ten Hoopen P, Cochrane G, L'Haridon S, Bizsel KC, Vezzi A, Lauro FM, Martin P, Jensen RM, Hinks J, Gebbels S, Rosselli R, De Pascale F, Schiavon R, Dos Santos A, Villar E, Pesant S, Cataletto B, Malfatti F, Edirisinghe R, Silveira JA, Barbier M, Turk V, Tinta T, Fuller WJ, Salihoglu I, Serakinci N, Ergoren MC, Bresnan E, Iriberri J, Nyhus PA, Bente E, Karlsen HE, Golyshin PN, Gasol JM, Moncheva S, Dzhembekova N, Johnson Z, Sinigalliano CD, Gidley ML, Zingone A, Danovaro R, Tsiamis G, Clark MS, Costa AC, El Bour M, Martins AM, Collins RE, Ducluzeau AL, Martinez J, Costello MJ, Amaral-Zettler LA, Gilbert JA, Davies N, Field D, Glöckner FO. PMID: 26097697; PMCID: PMC4473829.
      View in: PubMed   Mentions: 72     Fields:    
    181. Athletic equipment microbiota are shaped by interactions with human skin. Microbiome. 2015; 3:25. Wood M, Gibbons SM, Lax S, Eshoo-Anton TW, Owens SM, Kennedy S, Gilbert JA, Hampton-Marcell JT. PMID: 26113975; PMCID: PMC4480904.
      View in: PubMed   Mentions: 22     Fields:    
    182. Lifestyle evolution in cyanobacterial symbionts of sponges. mBio. 2015 Jun 02; 6(3):e00391-15. Burgsdorf I, Slaby BM, Handley KM, Haber M, Blom J, Marshall CW, Gilbert JA, Hentschel U, Steindler L. PMID: 26037118; PMCID: PMC4453008.
      View in: PubMed   Mentions: 45     Fields:    Translation:AnimalsCells
    183. The role of the commensal microbiota in the regulation of tolerance to dietary allergens. Curr Opin Allergy Clin Immunol. 2015 Jun; 15(3):243-9. Berni Canani R, Gilbert JA, Nagler CR. PMID: 25827065; PMCID: PMC4498960.
      View in: PubMed   Mentions: 27     Fields:    Translation:HumansAnimalsCells
    184. Metabolic potential of fatty acid oxidation and anaerobic respiration by abundant members of Thaumarchaeota and Thermoplasmata in deep anoxic peat. ISME J. 2015 Dec; 9(12):2740-4. Lin X, Handley KM, Gilbert JA, Kostka JE. PMID: 26000553; PMCID: PMC4817634.
      View in: PubMed   Mentions: 30     Fields:    Translation:CellsPHPublic Health
    185. Our unique microbial identity. Genome Biol. 2015 May 14; 16:97. Gilbert JA. PMID: 25971745; PMCID: PMC4430908.
      View in: PubMed   Mentions: 10     Fields:    Translation:Humans
    186. Forensic analysis of the microbiome of phones and shoes. Microbiome. 2015; 3:21. Lax S, Hampton-Marcell JT, Gibbons SM, Colares GB, Smith D, Eisen JA, Gilbert JA. PMID: 25969737; PMCID: PMC4427962.
      View in: PubMed   Mentions: 62     Fields:    
    187. Understanding grapevine-microbiome interactions: implications for viticulture industry. Microb Cell. 2015 May 04; 2(5):171-173. Zarraonaindia I, Gilbert JA. PMID: 28357290; PMCID: PMC5349240.
      View in: PubMed   Mentions: 5  
    188. Hospital-associated microbiota and implications for nosocomial infections. Trends Mol Med. 2015 Jul; 21(7):427-32. Lax S, Gilbert JA. PMID: 25907678.
      View in: PubMed   Mentions: 51     Fields:    Translation:HumansPHPublic Health
    189. Effects of diurnal variation of gut microbes and high-fat feeding on host circadian clock function and metabolism. Cell Host Microbe. 2015 May 13; 17(5):681-9. Leone V, Gibbons SM, Martinez K, Hutchison AL, Huang EY, Cham CM, Pierre JF, Heneghan AF, Nadimpalli A, Hubert N, Zale E, Wang Y, Huang Y, Theriault B, Dinner AR, Musch MW, Kudsk KA, Prendergast BJ, Gilbert JA, Chang EB. PMID: 25891358; PMCID: PMC4433408.
      View in: PubMed   Mentions: 329     Fields:    Translation:Animals
    190. Social behavior and the microbiome. Elife. 2015 Mar 31; 4. Gilbert JA. PMID: 25826451; PMCID: PMC4379491.
      View in: PubMed   Mentions: 6     Fields:    Translation:HumansAnimals
    191. The soil microbiome influences grapevine-associated microbiota. mBio. 2015 Mar 24; 6(2). Zarraonaindia I, Owens SM, Weisenhorn P, West K, Hampton-Marcell J, Lax S, Bokulich NA, Mills DA, Martin G, Taghavi S, van der Lelie D, Gilbert JA. PMID: 25805735; PMCID: PMC4453523.
      View in: PubMed   Mentions: 280     Fields:    Translation:AnimalsCellsPHPublic Health
    192. Towards large-cohort comparative studies to define the factors influencing the gut microbial community structure of ASD patients. Microb Ecol Health Dis. 2015; 26:26555. McDonald D, Hornig M, Lozupone C, Debelius J, Gilbert JA, Knight R. PMID: 25758371; PMCID: PMC4355505.
      View in: PubMed   Mentions: 10  
    193. Our interface with the built environment: immunity and the indoor microbiota. Trends Immunol. 2015 Mar; 36(3):121-3. Lax S, Nagler CR, Gilbert JA. PMID: 25754179; PMCID: PMC4666509.
      View in: PubMed   Mentions: 27     Fields:    Translation:Humans
    194. The microbe-mediated mechanisms affecting topsoil carbon stock in Tibetan grasslands. ISME J. 2015 Sep; 9(9):2012-20. Yue H, Wang M, Wang S, Gilbert JA, Sun X, Wu L, Lin Q, Hu Y, Li X, He Z, Zhou J, Yang Y. PMID: 25689025; PMCID: PMC4542033.
      View in: PubMed   Mentions: 23     Fields:    Translation:AnimalsCellsPHPublic Health
    195. Temporal patterns of rarity provide a more complete view of microbial diversity. Trends Microbiol. 2015 Jun; 23(6):335-40. Shade A, Gilbert JA. PMID: 25667105.
      View in: PubMed   Mentions: 50     Fields:    
    196. Predicting ecosystem emergent properties at multiple scales. Environ Microbiol Rep. 2015 Feb; 7(1):20-2. Gilbert JA, Henry C. PMID: 25721595.
      View in: PubMed   Mentions: 4     Fields:    Translation:PHPublic Health
    197. Diverse protist grazers select for virulence-related traits in Legionella. ISME J. 2015 Jul; 9(7):1607-18. Amaro F, Wang W, Gilbert JA, Anderson OR, Shuman HA. PMID: 25575308; PMCID: PMC4478701.
      View in: PubMed   Mentions: 27     Fields:    Translation:HumansAnimalsCellsPHPublic Health
    198. Life in a World without Microbes. PLoS Biol. 2014 Dec; 12(12):e1002020. Gilbert JA, Neufeld JD. PMID: 25513890; PMCID: PMC4267716.
      View in: PubMed   Mentions: 31     Fields:    Translation:HumansAnimalsCells
    199. Whole-grain wheat consumption reduces inflammation in a randomized controlled trial on overweight and obese subjects with unhealthy dietary and lifestyle behaviors: role of polyphenols bound to cereal dietary fiber. Am J Clin Nutr. 2015 Feb; 101(2):251-61. Vitaglione P, Mennella I, Ferracane R, Rivellese AA, Giacco R, Ercolini D, Gibbons SM, La Storia A, Gilbert JA, Jonnalagadda S, Thielecke F, Gallo MA, Scalfi L, Fogliano V. PMID: 25646321.
      View in: PubMed   Mentions: 97     Fields:    Translation:HumansAnimals
    200. Comparative genomic analysis of nine Sphingobium strains: insights into their evolution and hexachlorocyclohexane (HCH) degradation pathways. BMC Genomics. 2014 Nov 23; 15:1014. Verma H, Kumar R, Oldach P, Sangwan N, Khurana JP, Gilbert JA, Lal R. PMID: 25418849; PMCID: PMC4289293.
      View in: PubMed   Mentions: 29     Fields:    Translation:Cells
    201. Potential contribution of anammox to nitrogen loss from paddy soils in Southern China. Appl Environ Microbiol. 2015 Feb; 81(3):938-47. Yang XR, Li H, Nie SA, Su JQ, Weng BS, Zhu GB, Yao HY, Gilbert JA, Zhu YG. PMID: 25416768; PMCID: PMC4292472.
      View in: PubMed   Mentions: 19     Fields:    Translation:CellsPHPublic Health
    202. Ecological succession and viability of human-associated microbiota on restroom surfaces. Appl Environ Microbiol. 2015 Jan; 81(2):765-73. Gibbons SM, Schwartz T, Fouquier J, Mitchell M, Sangwan N, Gilbert JA, Kelley ST. PMID: 25398865; PMCID: PMC4277569.
      View in: PubMed   Mentions: 55     Fields:    Translation:HumansCellsPHPublic Health
    203. The role of macrobiota in structuring microbial communities along rocky shores. PeerJ. 2014; 2:e631. Pfister CA, Gilbert JA, Gibbons SM. PMID: 25337459; PMCID: PMC4203024.
      View in: PubMed   Mentions: 8     Fields:    
    204. Influence of acidic pH on hydrogen and acetate production by an electrosynthetic microbiome. PLoS One. 2014; 9(10):e109935. LaBelle EV, Marshall CW, Gilbert JA, May HD. PMID: 25333313; PMCID: PMC4198145.
      View in: PubMed   Mentions: 21     Fields:    Translation:Cells
    205. Development of the preterm infant gut microbiome: a research priority. Microbiome. 2014; 2:38. Groer MW, Luciano AA, Dishaw LJ, Ashmeade TL, Miller E, Gilbert JA. PMID: 25332768; PMCID: PMC4203464.
      View in: PubMed   Mentions: 132     Fields:    
    206. DNA extraction protocols cause differences in 16S rRNA amplicon sequencing efficiency but not in community profile composition or structure. Microbiologyopen. 2014 Dec; 3(6):910-21. Rubin BE, Sanders JG, Hampton-Marcell J, Owens SM, Gilbert JA, Moreau CS. PMID: 25257543; PMCID: PMC4263514.
      View in: PubMed   Mentions: 39     Fields:    Translation:AnimalsCells
    207. Membership and behavior of ultra-low-diversity pathogen communities present in the gut of humans during prolonged critical illness. mBio. 2014 Sep 23; 5(5):e01361-14. Zaborin A, Smith D, Garfield K, Quensen J, Shakhsheer B, Kade M, Tirrell M, Tiedje J, Gilbert JA, Zaborina O, Alverdy JC. PMID: 25249279; PMCID: PMC4173762.
      View in: PubMed   Mentions: 160     Fields:    Translation:HumansAnimalsCells
    208. Intestinal anastomotic injury alters spatially defined microbiome composition and function. Microbiome. 2014; 2:35. Shogan BD, Smith DP, Christley S, Gilbert JA, Zaborina O, Alverdy JC. PMID: 25250176; PMCID: PMC4171717.
      View in: PubMed   Mentions: 76     Fields:    
    209. Longitudinal analysis of microbial interaction between humans and the indoor environment. Science. 2014 Aug 29; 345(6200):1048-52. Lax S, Smith DP, Hampton-Marcell J, Owens SM, Handley KM, Scott NM, Gibbons SM, Larsen P, Shogan BD, Weiss S, Metcalf JL, Ursell LK, Vázquez-Baeza Y, Van Treuren W, Hasan NA, Gibson MK, Colwell R, Dantas G, Knight R, Gilbert JA. PMID: 25170151; PMCID: PMC4337996.
      View in: PubMed   Mentions: 410     Fields:    Translation:HumansAnimalsCells
    210. The Earth Microbiome project: successes and aspirations. BMC Biol. 2014 Aug 22; 12:69. Gilbert JA, Jansson JK, Knight R. PMID: 25184604; PMCID: PMC4141107.
      View in: PubMed   Mentions: 321     Fields:    Translation:Cells
    211. Subsampled open-reference clustering creates consistent, comprehensive OTU definitions and scales to billions of sequences. PeerJ. 2014; 2:e545. Rideout JR, He Y, Navas-Molina JA, Walters WA, Ursell LK, Gibbons SM, Chase J, McDonald D, Gonzalez A, Robbins-Pianka A, Clemente JC, Gilbert JA, Huse SM, Zhou HW, Knight R, Caporaso JG. PMID: 25177538; PMCID: PMC4145071.
      View in: PubMed   Mentions: 281     Fields:    
    212. Satellite remote sensing data can be used to model marine microbial metabolite turnover. ISME J. 2015 Jan; 9(1):166-79. Larsen PE, Scott N, Post AF, Field D, Knight R, Hamada Y, Gilbert JA. PMID: 25072414; PMCID: PMC4274419.
      View in: PubMed   Mentions: 8     Fields:    Translation:HumansCellsPHPublic Health
    213. Conditionally rare taxa disproportionately contribute to temporal changes in microbial diversity. mBio. 2014 Jul 15; 5(4):e01371-14. Shade A, Jones SE, Caporaso JG, Handelsman J, Knight R, Fierer N, Gilbert JA. PMID: 25028427; PMCID: PMC4161262.
      View in: PubMed   Mentions: 213     Fields:    Translation:Cells
    214. Communities of microbial eukaryotes in the mammalian gut within the context of environmental eukaryotic diversity. Front Microbiol. 2014; 5:298. Parfrey LW, Walters WA, Lauber CL, Clemente JC, Berg-Lyons D, Teiling C, Kodira C, Mohiuddin M, Brunelle J, Driscoll M, Fierer N, Gilbert JA, Knight R. PMID: 24995004; PMCID: PMC4063188.
      View in: PubMed   Mentions: 63  
    215. Understanding cultivar-specificity and soil determinants of the cannabis microbiome. PLoS One. 2014; 9(6):e99641. Winston ME, Hampton-Marcell J, Zarraonaindia I, Owens SM, Moreau CS, Gilbert JA, Hartsel JA, Hartsel J, Kennedy SJ, Gibbons SM. PMID: 24932479; PMCID: PMC4059704.
      View in: PubMed   Mentions: 24     Fields:    Translation:AnimalsCellsPHPublic Health
    216. Human and environmental impacts on river sediment microbial communities. PLoS One. 2014; 9(5):e97435. Gibbons SM, Jones E, Bearquiver A, Blackwolf F, Roundstone W, Scott N, Hooker J, Madsen R, Coleman ML, Gilbert JA. PMID: 24841417; PMCID: PMC4026135.
      View in: PubMed   Mentions: 37     Fields:    Translation:Humans
    217. The complete genome sequence for putative H₂- and S-oxidizer Candidatus Sulfuricurvum sp., assembled de novo from an aquifer-derived metagenome. Environ Microbiol. 2014 Nov; 16(11):3443-62. Handley KM, Bartels D, O'Loughlin EJ, Williams KH, Trimble WL, Skinner K, Gilbert JA, Desai N, Glass EM, Paczian T, Wilke A, Antonopoulos D, Kemner KM, Meyer F. PMID: 24628880.
      View in: PubMed   Mentions: 30     Fields:    Translation:Cells
    218. Disturbed subsurface microbial communities follow equivalent trajectories despite different structural starting points. Environ Microbiol. 2015 Mar; 17(3):622-36. Handley KM, Wrighton KC, Miller CS, Wilkins MJ, Kantor RS, Thomas BC, Williams KH, Gilbert JA, Long PE, Banfield JF. PMID: 24674078.
      View in: PubMed   Mentions: 18     Fields:    Translation:CellsPHPublic Health
    219. The gut of geographically disparate Ciona intestinalis harbors a core microbiota. PLoS One. 2014; 9(4):e93386. Dishaw LJ, Flores-Torres J, Lax S, Gemayel K, Leigh B, Melillo D, Mueller MG, Natale L, Zucchetti I, De Santis R, Pinto MR, Litman GW, Gilbert JA. PMID: 24695540; PMCID: PMC3973685.
      View in: PubMed   Mentions: 54     Fields:    Translation:AnimalsCells
    220. The microbial nitrogen cycling potential is impacted by polyaromatic hydrocarbon pollution of marine sediments. Front Microbiol. 2014; 5:108. Scott NM, Hess M, Bouskill NJ, Mason OU, Jansson JK, Gilbert JA. PMID: 24723913; PMCID: PMC3971162.
      View in: PubMed   Mentions: 20  
    221. Meeting report: Ocean 'omics science, technology and cyberinfrastructure: current challenges and future requirements (August 20-23, 2013). Stand Genomic Sci. 2014 Jun 15; 9(3):1252-8. Gilbert JA, Dick GJ, Jenkins B, Heidelberg J, Allen E, Mackey KR, DeLong EF. PMID: 25197495; PMCID: PMC4149014.
      View in: PubMed   Mentions:
    222. Characterizing changes in soil bacterial community structure in response to short-term warming. FEMS Microbiol Ecol. 2014 Aug; 89(2):281-92. Xiong J, Sun H, Peng F, Zhang H, Xue X, Gibbons SM, Gilbert JA, Chu H. PMID: 24476229.
      View in: PubMed   Mentions: 29     Fields:    Translation:AnimalsCellsPHPublic Health
    223. Genomic standards consortium projects. Stand Genomic Sci. 2014 Jun 15; 9(3):599-601. Field D, Sterk P, Kottmann R, De Smet JW, Amaral-Zettler L, Cochrane G, Cole JR, Davies N, Dawyndt P, Garrity GM, Gilbert JA, Glöckner FO, Hirschman L, Klenk HP, Knight R, Kyrpides N, Meyer F, Karsch-Mizrachi I, Morrison N, Robbins R, San Gil I, Sansone S, Schriml L, Tatusova T, Ussery D, Yilmaz P, White O, Wooley J, Caporaso G. PMID: 25197446; PMCID: PMC4148985.
      View in: PubMed   Mentions: 24  
    224. Metagenomics reveals sediment microbial community response to Deepwater Horizon oil spill. ISME J. 2014 Jul; 8(7):1464-75. Mason OU, Scott NM, Gonzalez A, Robbins-Pianka A, Bælum J, Kimbrel J, Bouskill NJ, Prestat E, Borglin S, Joyner DC, Fortney JL, Jurelevicius D, Stringfellow WT, Alvarez-Cohen L, Hazen TC, Knight R, Gilbert JA, Jansson JK. PMID: 24451203; PMCID: PMC4069396.
      View in: PubMed   Mentions: 91     Fields:    Translation:CellsPHPublic Health
    225. Saliva from obese individuals suppresses the release of aroma compounds from wine. PLoS One. 2014; 9(1):e85611. Piombino P, Genovese A, Esposito S, Moio L, Cutolo PP, Chambery A, Severino V, Moneta E, Smith DP, Owens SM, Gilbert JA, Ercolini D. PMID: 24465618; PMCID: PMC3899019.
      View in: PubMed   Mentions: 41     Fields:    Translation:HumansCells
    226. Metagenomic analysis of microbial consortium from natural crude oil that seeps into the marine ecosystem offshore Southern California. Stand Genomic Sci. 2014 Jun 15; 9(3):1259-74. Hawley ER, Piao H, Scott NM, Malfatti S, Pagani I, Huntemann M, Chen A, Glavina Del Rio T, Foster B, Copeland A, Jansson J, Pati A, Tringe S, Gilbert JA, Lorenson TD, Hess M. PMID: 25197496; PMCID: PMC4149020.
      View in: PubMed   Mentions: 13  
    227. Toward effective probiotics for autism and other neurodevelopmental disorders. Cell. 2013 Dec 19; 155(7):1446-8. Gilbert JA, Krajmalnik-Brown R, Porazinska DL, Weiss SJ, Knight R. PMID: 24360269; PMCID: PMC4166551.
      View in: PubMed   Mentions: 49     Fields:    Translation:HumansAnimals
    228. Impacts of bioturbation on temporal variation in bacterial and archaeal nitrogen-cycling gene abundance in coastal sediments. Environ Microbiol Rep. 2014 Feb; 6(1):113-21. Laverock B, Tait K, Gilbert JA, Osborn AM, Widdicombe S. PMID: 24596269; PMCID: PMC4208606.
      View in: PubMed   Mentions: 13     Fields:    Translation:AnimalsCells
    229. Reconstructing the microbial diversity and function of pre-agricultural tallgrass prairie soils in the United States. Science. 2013 Nov 01; 342(6158):621-4. Fierer N, Ladau J, Clemente JC, Leff JW, Owens SM, Pollard KS, Knight R, Gilbert JA, McCulley RL. PMID: 24179225.
      View in: PubMed   Mentions: 143     Fields:    Translation:AnimalsCellsPHPublic Health
    230. Reconstructing an ancestral genotype of two hexachlorocyclohexane-degrading Sphingobium species using metagenomic sequence data. ISME J. 2014 Feb; 8(2):398-408. Sangwan N, Verma H, Kumar R, Negi V, Lax S, Khurana P, Khurana JP, Gilbert JA, Lal R. PMID: 24030592; PMCID: PMC3906814.
      View in: PubMed   Mentions: 21     Fields:    Translation:CellsPHPublic Health
    231. Bioturbation determines the response of benthic ammonia-oxidizing microorganisms to ocean acidification. Philos Trans R Soc Lond B Biol Sci. 2013; 368(1627):20120441. Laverock B, Kitidis V, Tait K, Gilbert JA, Osborn AM, Widdicombe S. PMID: 23980243; PMCID: PMC3758174.
      View in: PubMed   Mentions: 13     Fields:    Translation:AnimalsCells
    232. Adenomatous polyps are driven by microbe-instigated focal inflammation and are controlled by IL-10-producing T cells. Cancer Res. 2013 Oct 01; 73(19):5905-13. Dennis KL, Wang Y, Blatner NR, Wang S, Saadalla A, Trudeau E, Roers A, Weaver CT, Lee JJ, Gilbert JA, Chang EB, Khazaie K. PMID: 23955389; PMCID: PMC4322779.
      View in: PubMed   Mentions: 107     Fields:    Translation:AnimalsCells
    233. Investigating the impact of storage conditions on microbial community composition in soil samples. PLoS One. 2013; 8(7):e70460. Rubin BE, Gibbons SM, Kennedy S, Hampton-Marcell J, Owens S, Gilbert JA. PMID: 23936206; PMCID: PMC3729949.
      View in: PubMed   Mentions: 39     Fields:    Translation:CellsPHPublic Health
    234. Metagenome sequencing of prokaryotic microbiota collected from Byron Glacier, Alaska. Genome Announc. 2013 Mar 21; 1(2):e0009913. Choudhari S, Smith S, Owens S, Gilbert JA, Shain DH, Dial RJ, Grigoriev A. PMID: 23516217; PMCID: PMC3623000.
      View in: PubMed   Mentions: 5  
    235. Evidence for a persistent microbial seed bank throughout the global ocean. Proc Natl Acad Sci U S A. 2013 Mar 19; 110(12):4651-5. Gibbons SM, Caporaso JG, Pirrung M, Field D, Knight R, Gilbert JA. PMID: 23487761; PMCID: PMC3607043.
      View in: PubMed   Mentions: 90     Fields:    Translation:CellsPHPublic Health
    236. Studying the microbiology of the indoor environment. Genome Biol. 2013 Feb 28; 14(2):202. Kelley ST, Gilbert JA. PMID: 23514020; PMCID: PMC3663111.
      View in: PubMed   Mentions: 69     Fields:    Translation:CellsPHPublic Health
    237. Preparation and metatranscriptomic analyses of host-microbe systems. Methods Enzymol. 2013; 531:169-85. Hampton-Marcell JT, Moormann SM, Owens SM, Gilbert JA. PMID: 24060121.
      View in: PubMed   Mentions: 6     Fields:    Translation:Cells
    238. Cross-biome metagenomic analyses of soil microbial communities and their functional attributes. Proc Natl Acad Sci U S A. 2012 Dec 26; 109(52):21390-5. Fierer N, Leff JW, Adams BJ, Nielsen UN, Bates ST, Lauber CL, Owens S, Gilbert JA, Wall DH, Caporaso JG. PMID: 23236140; PMCID: PMC3535587.
      View in: PubMed   Mentions: 446     Fields:    Translation:CellsPHPublic Health
    239. Comparative metagenomic analysis of soil microbial communities across three hexachlorocyclohexane contamination levels. PLoS One. 2012; 7(9):e46219. Sangwan N, Lata P, Dwivedi V, Singh A, Niharika N, Kaur J, Anand S, Malhotra J, Jindal S, Nigam A, Lal D, Dua A, Saxena A, Garg N, Verma M, Kaur J, Mukherjee U, Gilbert JA, Dowd SE, Raman R, Khurana P, Khurana JP, Lal R. PMID: 23029440; PMCID: PMC3460827.
      View in: PubMed   Mentions: 38     Fields:    Translation:AnimalsCellsPHPublic Health
    240. RCN4GSC Workshop Report: Managing Data at the Interface of Biodiversity and (Meta)Genomics, March 2011. Stand Genomic Sci. 2012 Oct 10; 7(1):159-65. Robbins RJ, Amaral-Zettler L, Bik H, Blum S, Edwards J, Field D, Garrity G, Gilbert JA, Kottmann R, Krishtalka L, Lapp H, Lawrence C, Morrison N, Tuama EÓ, Parr C, San Gil I, Schindel D, Schriml L, Vieglas D, Wooley J. PMID: 23451294; PMCID: PMC3570804.
      View in: PubMed   Mentions: 4  
    241. A call for an international network of genomic observatories (GOs). Gigascience. 2012 Jul 12; 1(1):5. Davies N, Meyer C, Gilbert JA, Amaral-Zettler L, Deck J, Bicak M, Rocca-Serra P, Assunta-Sansone S, Willis K, Field D. PMID: 23587188; PMCID: PMC3617453.
      View in: PubMed   Mentions: 12     Fields:    
    242. Unlocking the potential of metagenomics through replicated experimental design. Nat Biotechnol. 2012 Jun 07; 30(6):513-20. Knight R, Jansson J, Field D, Fierer N, Desai N, Fuhrman JA, Hugenholtz P, van der Lelie D, Meyer F, Stevens R, Bailey MJ, Gordon JI, Kowalchuk GA, Gilbert JA. PMID: 22678395; PMCID: PMC4902277.
      View in: PubMed   Mentions: 110     Fields:    Translation:HumansAnimals
    243. Modeling microbial community structure and functional diversity across time and space. FEMS Microbiol Lett. 2012 Jul; 332(2):91-8. Larsen PE, Gibbons SM, Gilbert JA. PMID: 22553907; PMCID: PMC3396557.
      View in: PubMed   Mentions: 10     Fields:    
    244. Report of the 13(th) Genomic Standards Consortium Meeting, Shenzhen, China, March 4-7, 2012. Stand Genomic Sci. 2012 May 25; 6(2):276-86. Gilbert JA, Bao Y, Wang H, Sansone SA, Edmunds SC, Morrison N, Meyer F, Schriml LM, Davies N, Sterk P, Wilkening J, Garrity GM, Field D, Robbins R, Smith DP, Mizrachi I, Moreau C. PMID: 22768370; PMCID: PMC3387801.
      View in: PubMed   Mentions: 2  
    245. Predicting bacterial community assemblages using an artificial neural network approach. Nat Methods. 2012 Apr 15; 9(6):621-5. Larsen PE, Field D, Gilbert JA. PMID: 22504588.
      View in: PubMed   Mentions: 56     Fields:    Translation:Cells
    246. Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms. ISME J. 2012 Aug; 6(8):1621-4. Caporaso JG, Lauber CL, Walters WA, Berg-Lyons D, Huntley J, Fierer N, Owens SM, Betley J, Fraser L, Bauer M, Gormley N, Gilbert JA, Smith G, Knight R. PMID: 22402401; PMCID: PMC3400413.
      View in: PubMed   Mentions: 3245     Fields:    Translation:CellsPHPublic Health
    247. Conceptualizing a Genomics Software Institute (GSI). Stand Genomic Sci. 2012 Mar 19; 6(1):136-44. Gilbert JA, Catlett C, Desai N, Knight R, White O, Robbins R, Sankaran R, Sansone SA, Field D, Meyer F. PMID: 22675605; PMCID: PMC3359878.
      View in: PubMed   Mentions: 1  
    248. Whole-genome sequence of the human pathogen Legionella pneumophila serogroup 12 strain 570-CO-H. J Bacteriol. 2012 Mar; 194(6):1613-4. Amaro F, Gilbert JA, Owens S, Trimble W, Shuman HA. PMID: 22374950; PMCID: PMC3294838.
      View in: PubMed   Mentions: 16     Fields:    Translation:HumansCells
    249. Structure, fluctuation and magnitude of a natural grassland soil metagenome. ISME J. 2012 Sep; 6(9):1677-87. Delmont TO, Prestat E, Keegan KP, Faubladier M, Robe P, Clark IM, Pelletier E, Hirsch PR, Meyer F, Gilbert JA, Le Paslier D, Simonet P, Vogel TM. PMID: 22297556; PMCID: PMC3498926.
      View in: PubMed   Mentions: 75     Fields:    Translation:CellsPHPublic Health
    250. From genomics to metagenomics. Curr Opin Biotechnol. 2012 Feb; 23(1):72-6. Desai N, Antonopoulos D, Gilbert JA, Glass EM, Meyer F. PMID: 22227326.
      View in: PubMed   Mentions: 25     Fields:    Translation:Humans
    251. Meeting report: the 2 annual argonne soils workshop, argonne national laboratory, chicago illinois, USA, october 6-8, 2010. Stand Genomic Sci. 2011 Nov 30; 5(2):198-202. O'Brien SL, Glass EM, Brulc JM, Gilbert JA, Antonopoulos DA, Meyer F. PMID: 22180822; PMCID: PMC3235513.
      View in: PubMed   Mentions:
    252. The Western English Channel contains a persistent microbial seed bank. ISME J. 2012 Jun; 6(6):1089-93. Caporaso JG, Paszkiewicz K, Field D, Knight R, Gilbert JA. PMID: 22071345; PMCID: PMC3358019.
      View in: PubMed   Mentions: 84     Fields:    Translation:Cells
    253. Substrate type determines metagenomic profiles from diverse chemical habitats. PLoS One. 2011; 6(9):e25173. Jeffries TC, Seymour JR, Gilbert JA, Dinsdale EA, Newton K, Leterme SS, Roudnew B, Smith RJ, Seuront L, Mitchell JG. PMID: 21966446; PMCID: PMC3179486.
      View in: PubMed   Mentions: 10     Fields:    Translation:PHPublic Health
    254. Defining seasonal marine microbial community dynamics. ISME J. 2012 Feb; 6(2):298-308. Gilbert JA, Steele JA, Caporaso JG, Steinbrück L, Reeder J, Temperton B, Huse S, McHardy AC, Knight R, Joint I, Somerfield P, Fuhrman JA, Field D. PMID: 21850055; PMCID: PMC3260500.
      View in: PubMed   Mentions: 363     Fields:    Translation:Cells
    255. Predicted Relative Metabolomic Turnover (PRMT): determining metabolic turnover from a coastal marine metagenomic dataset. Microb Inform Exp. 2011 Jun 14; 1(1):4. Larsen PE, Collart FR, Field D, Meyer F, Keegan KP, Henry CS, McGrath J, Quinn J, Gilbert JA. PMID: 22587810; PMCID: PMC3348665.
      View in: PubMed   Mentions: 42  
    256. The importance of metagenomic surveys to microbial ecology: or why Darwin would have been a metagenomic scientist. Microb Inform Exp. 2011 Jun 14; 1(1):5. Gilbert JA, O'Dor R, King N, Vogel TM. PMID: 22587826; PMCID: PMC3348666.
      View in: PubMed   Mentions: 9  
    257. Omics for understanding microbial functional dynamics. Environ Microbiol. 2012 Jan; 14(1):1-3. Jansson JK, Neufeld JD, Moran MA, Gilbert JA. PMID: 21651688.
      View in: PubMed   Mentions: 26     Fields:    
    258. The genomic standards consortium: bringing standards to life for microbial ecology. ISME J. 2011 Oct; 5(10):1565-7. Yilmaz P, Gilbert JA, Knight R, Amaral-Zettler L, Karsch-Mizrachi I, Cochrane G, Nakamura Y, Sansone SA, Glöckner FO, Field D. PMID: 21472015; PMCID: PMC3176512.
      View in: PubMed   Mentions: 29     Fields:    
    259. Meeting report: the terabase metagenomics workshop and the vision of an Earth microbiome project. Stand Genomic Sci. 2010 Dec 25; 3(3):243-8. Gilbert JA, Meyer F, Antonopoulos D, Balaji P, Brown CT, Brown CT, Desai N, Eisen JA, Evers D, Field D, Feng W, Huson D, Jansson J, Knight R, Knight J, Kolker E, Konstantindis K, Kostka J, Kyrpides N, Mackelprang R, McHardy A, Quince C, Raes J, Sczyrba A, Shade A, Stevens R. PMID: 21304727; PMCID: PMC3035311.
      View in: PubMed   Mentions: 119  
    260. Meeting Report from the Genomic Standards Consortium (GSC) Workshop 10. Stand Genomic Sci. 2010 Dec 25; 3(3):225-31. Glass E, Meyer F, Gilbert JA, Field D, Hunter S, Kottmann R, Kyrpides N, Sansone S, Schriml L, Sterk P, White O, Wooley J. PMID: 21304723; PMCID: PMC3035307.
      View in: PubMed   Mentions: 5  
    261. The Earth Microbiome Project: Meeting report of the "1 EMP meeting on sample selection and acquisition" at Argonne National Laboratory October 6 2010. Stand Genomic Sci. 2010 Dec 25; 3(3):249-53. Gilbert JA, Meyer F, Jansson J, Gordon J, Pace N, Tiedje J, Ley R, Fierer N, Field D, Kyrpides N, Glöckner FO, Klenk HP, Wommack KE, Glass E, Docherty K, Gallery R, Stevens R, Knight R. PMID: 21304728; PMCID: PMC3035312.
      View in: PubMed   Mentions: 93  
    262. Meeting report: GSC M5 roundtable at the 13th International Society for Microbial Ecology meeting in Seattle, WA, USA August 22-27, 2010. Stand Genomic Sci. 2010 Dec 15; 3(3):235-9. Gilbert JA, Meyer F, Knight R, Field D, Kyrpides N, Yilmaz P, Wooley J. PMID: 21304725; PMCID: PMC3035306.
      View in: PubMed   Mentions: 3  
    263. The taxonomic and functional diversity of microbes at a temperate coastal site: a 'multi-omic' study of seasonal and diel temporal variation. PLoS One. 2010 Nov 29; 5(11):e15545. Gilbert JA, Field D, Swift P, Thomas S, Cummings D, Temperton B, Weynberg K, Huse S, Hughes M, Joint I, Somerfield PJ, Mühling M. PMID: 21124740; PMCID: PMC2993967.
      View in: PubMed   Mentions: 103     Fields:    Translation:CellsPHPublic Health
    264. The future of microbial metagenomics (or is ignorance bliss?). ISME J. 2011 May; 5(5):777-9. Gilbert JA, Meyer F, Bailey MJ. PMID: 21107444; PMCID: PMC3105764.
      View in: PubMed   Mentions: 19     Fields:    Translation:Cells
    265. Metagenomics: A foundling finds its feet. Stand Genomic Sci. 2010 Oct 27; 3(2):212-3. Gilbert JA, Meyer F, Field D, Schriml LM, Garrity GM. PMID: 21304751; PMCID: PMC3035370.
      View in: PubMed   Mentions:
    266. Metagenomes and metatranscriptomes from the L4 long-term coastal monitoring station in the Western English Channel. Stand Genomic Sci. 2010 Oct 27; 3(2):183-93. Gilbert JA, Meyer F, Schriml L, Joint IR, Mühling M, Field D. PMID: 21304748; PMCID: PMC3035373.
      View in: PubMed   Mentions: 14  
    267. Marine genomics: at the interface of marine microbial ecology and biodiscovery. Microb Biotechnol. 2010 Sep; 3(5):531-43. Heidelberg KB, Gilbert JA, Joint I. PMID: 20953417; PMCID: PMC2948669.
      View in: PubMed   Mentions: 15     Fields:    
    268. Bioturbating shrimp alter the structure and diversity of bacterial communities in coastal marine sediments. ISME J. 2010 Dec; 4(12):1531-44. Laverock B, Smith CJ, Tait K, Osborn AM, Widdicombe S, Gilbert JA. PMID: 20596074.
      View in: PubMed   Mentions: 32     Fields:    Translation:AnimalsCellsPHPublic Health
    269. Comparison of multiple metagenomes using phylogenetic networks based on ecological indices. ISME J. 2010 Oct; 4(10):1236-42. Mitra S, Gilbert JA, Field D, Huson DH. PMID: 20428222.
      View in: PubMed   Mentions: 16     Fields:    
    270. Evidence for phosphonate usage in the coral holobiont. ISME J. 2010 Mar; 4(3):459-61. Thomas S, Burdett H, Temperton B, Wick R, Snelling D, McGrath JW, Quinn JP, Munn C, Gilbert JA. PMID: 19956272.
      View in: PubMed   Mentions: 20     Fields:    Translation:AnimalsCells
    271. The seasonal structure of microbial communities in the Western English Channel. Environ Microbiol. 2009 Dec; 11(12):3132-9. Gilbert JA, Field D, Swift P, Newbold L, Oliver A, Smyth T, Somerfield PJ, Huse S, Joint I. PMID: 19659500.
      View in: PubMed   Mentions: 164     Fields:    Translation:CellsPHPublic Health
    272. Bias in assessments of marine microbial biodiversity in fosmid libraries as evaluated by pyrosequencing. ISME J. 2009 Jul; 3(7):792-6. Temperton B, Field D, Oliver A, Tiwari B, Mühling M, Joint I, Gilbert JA. PMID: 19340085.
      View in: PubMed   Mentions: 17     Fields:    Translation:Cells
    273. Potential for phosphonoacetate utilization by marine bacteria in temperate coastal waters. Environ Microbiol. 2009 Jan; 11(1):111-25. Gilbert JA, Thomas S, Cooley NA, Kulakova A, Field D, Booth T, McGrath JW, Quinn JP, Joint I. PMID: 18783384.
      View in: PubMed   Mentions: 27     Fields:    Translation:Cells
    274. Detection of large numbers of novel sequences in the metatranscriptomes of complex marine microbial communities. PLoS One. 2008 Aug 22; 3(8):e3042. Gilbert JA, Field D, Huang Y, Edwards R, Li W, Gilna P, Joint I. PMID: 18725995; PMCID: PMC2518522.
      View in: PubMed   Mentions: 130     Fields:    Translation:AnimalsPHPublic Health
    275. A rare SAR11 fosmid clone confirming genetic variability in the 'Candidatus Pelagibacter ubique' genome. ISME J. 2008 Jul; 2(7):790-3. Gilbert JA, Mühling M, Joint I. PMID: 18496576.
      View in: PubMed   Mentions: 13     Fields:    Translation:Cells
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