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Design, optimization, and inference of biphasic decay of infectious virus particles. J Theor Biol. 2025 Jan 10; 600:112042.
Seurat J, Gerbino KR, Meyer JR, Borin JM, Weitz JS. PMID: 39799993.
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PubMed Mentions: Fields:
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Inferring strain-level mutational drivers of phage-bacteria interaction phenotypes arising during coevolutionary dynamics. Virus Evol. 2024; 10(1):veae104.
Lucia-Sanz A, Peng S, Leung CYJ, Gupta A, Meyer JR, Weitz JS. PMID: 39720789; PMCID: PMC11666707.
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Inferring strain-level mutational drivers of phage-bacteria interaction phenotypes arising during coevolutionary dynamics. bioRxiv. 2024 Nov 21.
Lucia-Sanz A, Peng S, Leung CYJ, Gupta A, Meyer JR, Weitz JS. PMID: 38260415; PMCID: PMC10802490.
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PubMed Mentions:
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Design, optimization, and inference of biphasic decay of infectious virus particles. bioRxiv. 2024 Aug 05.
Seurat J, Gerbino KR, Meyer JR, Borin JM, Weitz JS. PMID: 38464262; PMCID: PMC10925204.
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PubMed Mentions:
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Bacteriophage Φ21's receptor-binding protein evolves new functions through destabilizing mutations that generate non-genetic phenotypic heterogeneity. Virus Evol. 2024; 10(1):veae049.
Gerbino KR, Borin JM, Ardell SM, Lee JJ, Corbett KD, Meyer JR. PMID: 39170727; PMCID: PMC11336670.
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An intron endonuclease facilitates interference competition between coinfecting viruses. Science. 2024 Jul 05; 385(6704):105-112.
Birkholz EA, Morgan CJ, Laughlin TG, Lau RK, Prichard A, Rangarajan S, Meza GN, Lee J, Armbruster E, Suslov S, Pogliano K, Meyer JR, Villa E, Corbett KD, Pogliano J. PMID: 38963841; PMCID: PMC11620839.
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PubMed Mentions:
1 Fields:
Translation:
Cells
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More evolvable bacteriophages better suppress their host. Evol Appl. 2024 Jul; 17(7):e13742.
Horwitz EK, Strobel HM, Haiso J, Meyer JR. PMID: 38975285; PMCID: PMC11224127.
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Bacterial resistance response and resource availability mediate viral coexistence. J Evol Biol. 2024 Apr 14; 37(4):371-382.
Butt L, Meyer JR, Lindsay RJ, Beardmore RE, Gudelj I. PMID: 38386697.
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PubMed Mentions: Fields:
Translation:
Cells
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Viral Receptor-Binding Protein Evolves New Function through Mutations That Cause Trimer Instability and Functional Heterogeneity. Mol Biol Evol. 2024 Apr 02; 41(4).
Strobel HM, Labador SD, Basu D, Sane M, Corbett KD, Meyer JR. PMID: 38586942; PMCID: PMC10999833.
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PubMed Mentions:
1 Fields:
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Cells
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Competition-driven eco-evolutionary feedback reshapes bacteriophage lambda's fitness landscape and enables speciation. Nat Commun. 2024 Jan 29; 15(1):863.
Doud MB, Gupta A, Li V, Medina SJ, De La Fuente CA, Meyer JR. PMID: 38286804; PMCID: PMC10825149.
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PubMed Mentions:
1 Fields:
Translation:
Cells
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Upper Bound on the Mutational Burden Imposed by a CRISPR-Cas9 Gene-Drive Element. bioRxiv. 2023 Nov 29.
Overton MS, Guy SE, Chen X, Martsul A, Carolino K, Akbari OS, Meyer JR, Kryazhimskiy S. PMID: 38076841; PMCID: PMC10705488.
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Rapid bacteria-phage coevolution drives the emergence of multiscale networks. Science. 2023 11 10; 382(6671):674-678.
Borin JM, Lee JJ, Lucia-Sanz A, Gerbino KR, Weitz JS, Meyer JR. PMID: 37943920.
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PubMed Mentions:
7 Fields:
Translation:
Cells
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A mobile intron facilitates interference competition between co-infecting viruses. bioRxiv. 2023 Sep 30.
Birkholz EA, Morgan CJ, Laughlin TG, Lau RK, Prichard A, Rangarajan S, Meza GN, Lee J, Armbruster EG, Suslov S, Pogliano K, Meyer JR, Villa E, Corbett KD, Pogliano J. PMID: 37808663; PMCID: PMC10557746.
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PubMed Mentions:
1
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Competition-driven eco-evolutionary feedback reshapes bacteriophage lambda's fitness landscape and enables speciation. bioRxiv. 2023 Aug 14.
Doud MB, Gupta A, Li V, Medina SJ, De La Fuente CA, Meyer JR. PMID: 37645887; PMCID: PMC10461988.
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Canonical Host-Pathogen Trade-Offs Subverted by Mutations with Dual Benefits. Am Nat. 2023 05; 201(5):659-679.
Beardmore R, Hewlett M, Peña-Miller R, Gudelj I, Meyer JR. PMID: 37130231.
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PubMed Mentions:
2 Fields:
Translation:
Cells
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Fecal virome transplantation is sufficient to alter fecal microbiota and drive lean and obese body phenotypes in mice. bioRxiv. 2023 Feb 04.
Borin JM, Liu R, Wang Y, Wu TC, Chopyk J, Huang L, Kuo P, Ghose C, Meyer JR, Tu XM, Schnabl B, Pride DT. PMID: 36778328; PMCID: PMC9915734.
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PubMed Mentions:
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Fecal virome transplantation is sufficient to alter fecal microbiota and drive lean and obese body phenotypes in mice. Gut Microbes. 2023 Jan-Dec; 15(1):2236750.
Borin JM, Liu R, Wang Y, Wu TC, Chopyk J, Huang L, Kuo P, Ghose C, Meyer JR, Tu XM, Schnabl B, Pride DT. PMID: 37475473; PMCID: PMC10364654.
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PubMed Mentions:
12 Fields:
Translation:
AnimalsCells
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Comparison of bacterial suppression by phage cocktails, dual-receptor generalists, and coevolutionarily trained phages. Evol Appl. 2023 Jan; 16(1):152-162.
Borin JM, Lee JJ, Gerbino KR, Meyer JR. PMID: 36699129; PMCID: PMC9850009.
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PubMed Mentions:
8
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A Trait-Based Approach to Predicting Viral Host-Range Evolvability. Annu Rev Virol. 2022 09 29; 9(1):139-156.
Strobel HM, Stuart EC, Meyer JR. PMID: 36173699.
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PubMed Mentions:
2 Fields:
Translation:
Cells
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Host-parasite coevolution promotes innovation through deformations in fitness landscapes. Elife. 2022 07 06; 11.
Gupta A, Zaman L, Strobel HM, Gallie J, Burmeister AR, Kerr B, Tamar ES, Kishony R, Meyer JR. PMID: 35793223; PMCID: PMC9259030.
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PubMed Mentions:
13 Fields:
Translation:
AnimalsCells
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Viral protein instability enhances host-range evolvability. PLoS Genet. 2022 02; 18(2):e1010030.
Strobel HM, Horwitz EK, Meyer JR. PMID: 35176040; PMCID: PMC8890733.
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PubMed Mentions:
9 Fields:
Translation:
Cells
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Leapfrog dynamics in phage-bacteria coevolution revealed by joint analysis of cross-infection phenotypes and whole genome sequencing. Ecol Lett. 2022 Apr; 25(4):876-888.
Gupta A, Peng S, Leung CY, Borin JM, Medina SJ, Weitz JS, Meyer JR. PMID: 35092147; PMCID: PMC10167754.
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PubMed Mentions:
8 Fields:
Translation:
Cells
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Coevolutionary phage training leads to greater bacterial suppression and delays the evolution of phage resistance. Proc Natl Acad Sci U S A. 2021 06 08; 118(23).
Borin JM, Avrani S, Barrick JE, Petrie KL, Meyer JR. PMID: 34083444; PMCID: PMC8201913.
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PubMed Mentions:
56 Fields:
Translation:
Cells
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Viral speciation through subcellular genetic isolation and virogenesis incompatibility. Nat Commun. 2021 01 12; 12(1):342.
Chaikeeratisak V, Birkholz EA, Prichard AM, Egan ME, Mylvara A, Nonejuie P, Nguyen KT, Sugie J, Meyer JR, Pogliano J. PMID: 33436625; PMCID: PMC7804931.
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PubMed Mentions:
12 Fields:
Translation:
Cells
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Trade-off drives Pareto optimality of within- and among-year emergence timing in response to increasing aridity. Evol Appl. 2021 Mar; 14(3):658-673.
Waterton J, Mazer SJ, Meyer JR, Cleland EE. PMID: 33767742; PMCID: PMC7980269.
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PubMed Mentions:
1
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Bacteriophage lambda overcomes a perturbation in its host-viral genetic network through mutualism and evolution of life history traits. Evolution. 2020 04; 74(4):764-774.
Gupta A, Soto AN, Medina SJ, Petrie KL, Meyer JR. PMID: 31891185.
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PubMed Mentions:
2 Fields:
Translation:
Cells
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Gain-of-function experiments with bacteriophage lambda uncover residues under diversifying selection in nature. Evolution. 2018 10; 72(10):2234-2243.
Maddamsetti R, Johnson DT, Spielman SJ, Petrie KL, Marks DS, Meyer JR. PMID: 30152871; PMCID: PMC6646904.
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PubMed Mentions:
11 Fields:
Translation:
Cells
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Leaky resistance and the conditions for the existence of lytic bacteriophage. PLoS Biol. 2018 08; 16(8):e2005971.
Chaudhry WN, Pleška M, Shah NN, Weiss H, McCall IC, Meyer JR, Gupta A, Guet CC, Levin BR. PMID: 30114198; PMCID: PMC6112682.
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PubMed Mentions:
36 Fields:
Translation:
Cells
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Destabilizing mutations encode nongenetic variation that drives evolutionary innovation. Science. 2018 Mar 30; 359(6383):1542-1545.
Petrie KL, Palmer ND, Johnson DT, Medina SJ, Yan SJ, Li V, Burmeister AR, Meyer JR. PMID: 29599247.
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PubMed Mentions:
29 Fields:
Translation:
Cells
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Evolution of organismal stoichiometry in a long-term experiment with Escherichia coli. R Soc Open Sci. 2017 Jul; 4(7):170497.
Turner CB, Wade BD, Meyer JR, Sommerfeld BA, Lenski RE. PMID: 28791173; PMCID: PMC5541568.
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PubMed Mentions:
8
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Ecological speciation of bacteriophage lambda in allopatry and sympatry. Science. 2016 Dec 09; 354(6317):1301-1304.
Meyer JR, Dobias DT, Medina SJ, Servilio L, Gupta A, Lenski RE. PMID: 27884940.
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PubMed Mentions:
41 Fields:
Translation:
Cells
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Host coevolution alters the adaptive landscape of a virus. Proc Biol Sci. 2016 Sep 28; 283(1839).
Burmeister AR, Lenski RE, Meyer JR. PMID: 27683370; PMCID: PMC5046904.
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PubMed Mentions:
17 Fields:
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Biophysical mechanisms that maintain biodiversity through trade-offs. Nat Commun. 2015 Feb 19; 6:6278.
Meyer JR, Gudelj I, Beardmore R. PMID: 25695944.
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PubMed Mentions:
23 Fields:
Translation:
AnimalsCells
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Coevolution drives the emergence of complex traits and promotes evolvability. PLoS Biol. 2014 Dec; 12(12):e1002023.
Zaman L, Meyer JR, Devangam S, Bryson DM, Lenski RE, Ofria C. PMID: 25514332; PMCID: PMC4267771.
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PubMed Mentions:
38 Fields:
Translation:
Animals
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Sticky bacteriophage protect animal cells. Proc Natl Acad Sci U S A. 2013 Jun 25; 110(26):10475-6.
Meyer JR. PMID: 23749871; PMCID: PMC3696770.
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PubMed Mentions:
6 Fields:
Translation:
HumansAnimalsCells
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Phage-bacteria infection networks. Trends Microbiol. 2013 Feb; 21(2):82-91.
Weitz JS, Poisot T, Meyer JR, Flores CO, Valverde S, Sullivan MB, Hochberg ME. PMID: 23245704.
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PubMed Mentions:
128 Fields:
Translation:
Cells
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Repeatability and contingency in the evolution of a key innovation in phage lambda. Science. 2012 Jan 27; 335(6067):428-32.
Meyer JR, Dobias DT, Weitz JS, Barrick JE, Quick RT, Lenski RE. PMID: 22282803; PMCID: PMC3306806.
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PubMed Mentions:
223 Fields:
Translation:
Cells
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Statistical structure of host-phage interactions. Proc Natl Acad Sci U S A. 2011 Jul 12; 108(28):E288-97.
Flores CO, Meyer JR, Valverde S, Farr L, Weitz JS. PMID: 21709225; PMCID: PMC3136311.
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PubMed Mentions:
131 Fields:
Translation:
Cells
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Parallel changes in host resistance to viral infection during 45,000 generations of relaxed selection. Evolution. 2010 Oct; 64(10):3024-34.
Meyer JR, Agrawal AA, Quick RT, Dobias DT, Schneider D, Lenski RE. PMID: 20550574.
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PubMed Mentions:
27 Fields:
Translation:
Cells
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An integrative approach to understanding microbial diversity: from intracellular mechanisms to community structure. Ecol Lett. 2010 Sep; 13(9):1073-84.
Gudelj I, Weitz JS, Ferenci T, Claire Horner-Devine M, Marx CJ, Meyer JR, Forde SE. PMID: 20576029; PMCID: PMC3069490.
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PubMed Mentions:
42 Fields:
Translation:
CellsPHPublic Health
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Overshooting dynamics in a model adaptive radiation. Proc Biol Sci. 2011 Feb 07; 278(1704):392-8.
Meyer JR, Schoustra SE, Lachapelle J, Kassen R. PMID: 20554549; PMCID: PMC3013401.
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PubMed Mentions:
8 Fields:
Translation:
Cells
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Mesenchymal stem cells protect breast cancer cells through regulatory T cells: role of mesenchymal stem cell-derived TGF-beta. J Immunol. 2010 May 15; 184(10):5885-94.
Patel SA, Meyer JR, Greco SJ, Corcoran KE, Bryan M, Rameshwar P. PMID: 20382885.
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PubMed Mentions:
172 Fields:
Translation:
HumansAnimalsCells
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The effects of competition and predation on diversification in a model adaptive radiation. Nature. 2007 Mar 22; 446(7134):432-5.
Meyer JR, Kassen R. PMID: 17377581.
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PubMed Mentions:
69 Fields:
Translation:
AnimalsCells
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Prey evolution on the time scale of predator-prey dynamics revealed by allele-specific quantitative PCR. Proc Natl Acad Sci U S A. 2006 Jul 11; 103(28):10690-5.
Meyer JR, Ellner SP, Hairston NG, Jones LE, Yoshida T. PMID: 16807296; PMCID: PMC1502293.
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PubMed Mentions:
23 Fields:
Translation:
AnimalsCells