Daniel Sweeney

Title(s)Associate Clinical Professor, Medicine
SchoolVc-health Sciences-schools
Address9500 Gilman Drive #
La Jolla CA 92093
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Coronavirus disease 2019 respiratory failure: what is the best supportive care for patients who require ICU admission? Curr Opin Crit Care. 2021 10 01; 27(5):462-467. Sweeney DA, Malhotra A. PMID: 34310373.
      View in: PubMed   Mentions:    Fields:    Translation:HumansPHPublic Health
    2. Integrated Multiorgan Bedside Ultrasound for the Diagnosis and Management of Sepsis and Septic Shock. Semin Respir Crit Care Med. 2021 Oct; 42(5):641-649. Sweeney DA, Wiley BM. PMID: 34544181.
      View in: PubMed   Mentions:    Fields:    
    3. Deconstructing the Treatment Effect of Remdesivir in the Adaptive COVID-19 Treatment Trial-1: Implications for Critical Care Resource Utilization. Clin Infect Dis. 2021 Aug 19. Fintzi J, Bonnett T, Sweeney DA, Huprikar NA, Ganesan A, Frank MG, McLellan SLF, Dodd LE, Tebas P, Mehta AK. PMID: 34409989.
      View in: PubMed   Mentions:    Fields:    
    4. Convalescent Plasma and Coronavirus Disease 2019: Time for Reassessment. Crit Care Med. 2021 07 01; 49(7):1182-1186. Sweeney DA, Benson CA, Kalil AC. PMID: 33870924.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    5. SARS-CoV-2 detection status associates with bacterial community composition in patients and the hospital environment. Microbiome. 2021 06 08; 9(1):132. Marotz C, Belda-Ferre P, Ali F, Das P, Huang S, Cantrell K, Jiang L, Martino C, Diner RE, Rahman G, McDonald D, Armstrong G, Kodera S, Donato S, Ecklu-Mensah G, Gottel N, Salas Garcia MC, Chiang LY, Salido RA, Shaffer JP, Bryant MK, Sanders K, Humphrey G, Ackermann G, Haiminen N, Beck KL, Kim HC, Carrieri AP, Parida L, Vázquez-Baeza Y, Torriani FJ, Knight R, Gilbert J, Sweeney DA, Allard SM. PMID: 34103074.
      View in: PubMed   Mentions: 3     Fields:    Translation:HumansPHPublic Health
    6. No One Likes a Stick up Their Nose: Making the Case for Saliva-based Testing for Coronavirus Disease 2019 (COVID-19). Clin Infect Dis. 2021 05 04; 72(9):e357-e358. Ali F, Sweeney DA. PMID: 32875330.
      View in: PubMed   Mentions: 2     Fields:    Translation:Humans
    7. Infectious Diseases Society of America Position Paper: Recommended Revisions to the National Severe Sepsis and Septic Shock Early Management Bundle (SEP-1) Sepsis Quality Measure. Clin Infect Dis. 2021 02 16; 72(4):541-552. Rhee C, Chiotos K, Cosgrove SE, Heil EL, Kadri SS, Kalil AC, Gilbert DN, Masur H, Septimus EJ, Sweeney DA, Strich JR, Winslow DL, Klompas M. PMID: 32374861.
      View in: PubMed   Mentions: 16     Fields:    Translation:Humans
    8. Feasibility of using alternative swabs and storage solutions for paired SARS-CoV-2 detection and microbiome analysis in the hospital environment. Microbiome. 2021 01 22; 9(1):25. Minich JJ, Ali F, Marotz C, Belda-Ferre P, Chiang L, Shaffer JP, Carpenter CS, McDonald D, Gilbert J, Allard SM, Allen EE, Knight R, Sweeney DA, Swafford AD. PMID: 33482920.
      View in: PubMed   Mentions: 6     Fields:    Translation:Humans
    9. In Pursuit of Microbiome-based Therapies for Acute Respiratory Failure. Am J Respir Crit Care Med. 2020 12 15; 202(12):1616-1618. Ali F, Sweeney DA. PMID: 32910676.
      View in: PubMed   Mentions: 2     Fields:    Translation:Humans
    10. Baricitinib plus Remdesivir for Hospitalized Adults with Covid-19. N Engl J Med. 2021 03 04; 384(9):795-807. Kalil AC, Patterson TF, Mehta AK, Tomashek KM, Wolfe CR, Ghazaryan V, Marconi VC, Ruiz-Palacios GM, Hsieh L, Kline S, Tapson V, Iovine NM, Jain MK, Sweeney DA, El Sahly HM, Branche AR, Regalado Pineda J, Lye DC, Sandkovsky U, Luetkemeyer AF, Cohen SH, Finberg RW, Jackson PEH, Taiwo B, Paules CI, Arguinchona H, Erdmann N, Ahuja N, Frank M, Oh MD, Kim ES, Tan SY, Mularski RA, Nielsen H, Ponce PO, Taylor BS, Larson L, Rouphael NG, Saklawi Y, Cantos VD, Ko ER, Engemann JJ, Amin AN, Watanabe M, Billings J, Elie MC, Davey RT, Burgess TH, Ferreira J, Green M, Makowski M, Cardoso A, de Bono S, Bonnett T, Proschan M, Deye GA, Dempsey W, Nayak SU, Dodd LE, Beigel JH, ACTT-2 Study Group Members . PMID: 33306283.
      View in: PubMed   Mentions: 233     Fields:    Translation:Humans
    11. Microbial context predicts SARS-CoV-2 prevalence in patients and the hospital built environment. medRxiv. 2020 Nov 22. Marotz C, Belda-Ferre P, Ali F, Das P, Huang S, Cantrell K, Jiang L, Martino C, Diner RE, Rahman G, McDonald D, Armstrong G, Kodera S, Donato S, Ecklu-Mensah G, Gottel N, Garcia MCS, Chiang LY, Salido RA, Shaffer JP, Bryant M, Sanders K, Humphrey G, Ackermann G, Haiminen N, Beck KL, Kim HC, Carrieri AP, Parida L, Vázquez-Baeza Y, Torriani FJ, Knight R, Gilbert JA, Sweeney DA, Allard SM. PMID: 33236030.
      View in: PubMed   Mentions:
    12. Throat-Wash Testing and Coronavirus Disease 2019: Should We Put Our Money Where Our Mouth Is? Clin Infect Dis. 2020 11 05; 71(8):1982-1983. Ali F, Sweeney DA. PMID: 32353114.
      View in: PubMed   Mentions:    Fields:    Translation:HumansCellsPHPublic Health
    13. Remdesivir for the Treatment of Covid-19 - Final Report. N Engl J Med. 2020 11 05; 383(19):1813-1826. Beigel JH, Tomashek KM, Dodd LE, Mehta AK, Zingman BS, Kalil AC, Hohmann E, Chu HY, Luetkemeyer A, Kline S, Lopez de Castilla D, Finberg RW, Dierberg K, Tapson V, Hsieh L, Patterson TF, Paredes R, Sweeney DA, Short WR, Touloumi G, Lye DC, Ohmagari N, Oh MD, Ruiz-Palacios GM, Benfield T, Fätkenheuer G, Kortepeter MG, Atmar RL, Creech CB, Lundgren J, Babiker AG, Pett S, Neaton JD, Burgess TH, Bonnett T, Green M, Makowski M, Osinusi A, Nayak S, Lane HC, ACTT-1 Study Group Members . PMID: 32445440.
      View in: PubMed   Mentions: 1414     Fields:    Translation:HumansCellsPHPublic HealthCTClinical Trials
    14. Feasibility of using alternative swabs and storage solutions for paired SARS-CoV-2 detection and microbiome analysis in the hospital environment. Res Sq. 2020 Aug 18. Minich J, Ali F, Marotz C, Belda-Ferre P, Chiang L, Shaffer JP, Carpenter CS, McDonald D, Gilbert J, Allard SM, Allen EE, Knight R, Sweeney DA, Swafford AD. PMID: 32839765.
      View in: PubMed   Mentions:
    15. Feasibility of using alternative swabs and storage solutions for paired SARS-CoV-2 detection and microbiome analysis in the hospital environment. medRxiv. 2020 Aug 13. Minich JJ, Ali F, Marotz C, Belda-Ferre P, Chiang L, Shaffer JP, Carpenter CS, McDonald D, Gilbert JA, Allard SM, Allen EE, Knight R, Sweeney DA, Swafford AD. PMID: 32511552.
      View in: PubMed   Mentions:
    16. Temporal variations in bacterial community diversity and composition throughout intensive care unit renovations. Microbiome. 2020 06 08; 8(1):86. Chopyk J, Akrami K, Bavly T, Shin JH, Schwanemann LK, Ly M, Kalia R, Xu Y, Kelley ST, Malhotra A, Torriani FJ, Sweeney DA, Pride DT. PMID: 32513256.
      View in: PubMed   Mentions: 3     Fields:    Translation:CellsPHPublic Health
    17. Be Quick But Don't Hurry: Septic Shock, Staphylococcus aureus Bacteremia, and the Timing of Appropriate Antibiotics. Crit Care Med. 2020 04; 48(4):608-609. Sweeney DA, Kalil AC. PMID: 32205613.
      View in: PubMed   Mentions:    Fields:    Translation:HumansCells
    18. The last breath for inhaled antibiotics and VAP? Not so fast. Lancet Infect Dis. 2020 03; 20(3):265-266. Sweeney DA, Kalil AC. PMID: 31866325.
      View in: PubMed   Mentions: 2     Fields:    Translation:Humans
    19. Predictors of Acute Liver Failure in Patients With Acute Hepatitis A: An Analysis of the 2016-2018 San Diego County Hepatitis A Outbreak. Open Forum Infect Dis. 2019 Nov; 6(11):ofz467. Jiang AA, Greenwald HS, Sheikh L, Wooten DA, Malhotra A, Schooley RT, Sweeney DA. PMID: 31777757.
      View in: PubMed   Mentions:
    20. Why don't we have more inhaled antibiotics to treat ventilator-associated pneumonia? Clin Microbiol Infect. 2019 Oct; 25(10):1195-1199. Sweeney DA, Kalil AC. PMID: 31035015.
      View in: PubMed   Mentions: 3     Fields:    Translation:Humans
    21. Professionals Versus Popup Windows: The Value of Antimicrobial Stewardship in the ICU. Crit Care Med. 2019 02; 47(2):290-291. Sweeney DA. PMID: 30653058.
      View in: PubMed   Mentions: 1     Fields:    Translation:Humans
    22. Didn't inhale? Time to reconsider aerosolized antibiotics in the treatment of ventilator-associated pneumonia. Crit Care. 2018 Dec 05; 22(1):333. Sweeney DA, Kalil AC. PMID: 30518423.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    23. Should We Manage All Septic Patients Based on a Single Definition? An Alternative Approach. Crit Care Med. 2018 02; 46(2):177-180. Kalil AC, Sweeney DA. PMID: 29068856.
      View in: PubMed   Mentions: 5     Fields:    Translation:Humans
    24. The microbiome of the critically ill patient. Curr Opin Crit Care. 2018 Feb; 24(1):49-54. Akrami K, Sweeney DA. PMID: 29257783.
      View in: PubMed   Mentions: 11     Fields:    Translation:Humans
    25. Reply to Hassoun et al. Clin Infect Dis. 2017 06 01; 64(11):1633-1634. Sweeney DA, Klompas M, Muscedere J, Metersky ML, Kalil AC. PMID: 28369298.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    26. A Patient With a Subarachnoid Hemorrhage After Endovascular Coiling and a Malfunctioning Ventriculostomy. Chest. 2017 04; 151(4):e81-e84. Wardi G, Wouden J, Thomas JE, Sweeney DA. PMID: 28390641.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    27. Emergence of Extended-Spectrum Beta-Lactamase-Producing Enterobacteriaceae Colonization: What Termites Can Teach Us About the Gut Microbiota. Crit Care Med. 2017 04; 45(4):752-754. Sweeney DA, Kalil AC. PMID: 28291103.
      View in: PubMed   Mentions:    Fields:    Translation:AnimalsCells
    28. Reply to Daniels et al. Clin Infect Dis. 2017 02 01; 64(3):387-388. Palmer LB, Sweeney DA, Metersky ML, Kalil AC. PMID: 27803095.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    29. Executive Summary: Management of Adults With Hospital-acquired and Ventilator-associated Pneumonia: 2016 Clinical Practice Guidelines by the Infectious Diseases Society of America and the American Thoracic Society. Clin Infect Dis. 2016 Sep 01; 63(5):575-82. Kalil AC, Metersky ML, Klompas M, Muscedere J, Sweeney DA, Palmer LB, Napolitano LM, O'Grady NP, Bartlett JG, Carratalà J, El Solh AA, Ewig S, Fey PD, File TM, Restrepo MI, Roberts JA, Waterer GW, Cruse P, Knight SL, Brozek JL. PMID: 27521441.
      View in: PubMed   Mentions: 62     Fields:    Translation:Humans
    30. Secondary Infection in Patients With Sepsis. JAMA. 2016 Aug 16; 316(7):771-2. Sweeney DA, Kalil AC. PMID: 27533165.
      View in: PubMed   Mentions: 1     Fields:    Translation:Humans
    31. Management of Adults With Hospital-acquired and Ventilator-associated Pneumonia: 2016 Clinical Practice Guidelines by the Infectious Diseases Society of America and the American Thoracic Society. Clin Infect Dis. 2016 Sep 01; 63(5):e61-e111. Kalil AC, Metersky ML, Klompas M, Muscedere J, Sweeney DA, Palmer LB, Napolitano LM, O'Grady NP, Bartlett JG, Carratalà J, El Solh AA, Ewig S, Fey PD, File TM, Restrepo MI, Roberts JA, Waterer GW, Cruse P, Knight SL, Brozek JL. PMID: 27418577.
      View in: PubMed   Mentions: 537     Fields:    Translation:Humans
    32. Antibiotic stewardship in the intensive care unit: tools for de-escalation from the American Thoracic Society Meeting 2016. J Thorac Dis. 2016 Jul; 8(Suppl 7):S533-5. Akrami K, Sweeney DA, Malhotra A. PMID: 27606085.
      View in: PubMed   Mentions:
    33. Measuring Impact: Citation Rates and the Quest to Identify Meaningful Clinical Research in Critical Care Medicine. Crit Care Med. 2016 Apr; 44(4):844-5. Cortés-Puch I, Natanson C, Sweeney DA. PMID: 26974447.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    34. Improved Outcomes in Critically Ill Patients With AIDS: How Does This Trend Continue? Crit Care Med. 2016 Feb; 44(2):446-7. Sweeney DA, Akrami K, Malhotra A. PMID: 26771791.
      View in: PubMed   Mentions: 2     Fields:    Translation:Humans
    35. Choosing the Duration of Therapy for Bacteremia: Keep Calm and Work With Your Infectious Disease and Antibiotic Stewardship Colleagues. Crit Care Med. 2016 Feb; 44(2):439-40. Hanna RF, Ward TJ, Chow DS, Lagana SM, Moreira RK, Emond JC, Weintraub JL, Prince MR, Sweeney DA, Kalil AC. PMID: 26771787.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    36. Hypothalamic-pituitary-adrenal axis in lethal canine Staphylococcus aureus pneumonia. Am J Physiol Endocrinol Metab. 2014 Dec 01; 307(11):E994-E1008. Cortés-Puch I, Hicks CW, Sun J, Solomon SB, Eichacker PQ, Sweeney DA, Nieman LK, Whitley EM, Behrend EN, Natanson C, Danner RL. PMID: 25294215.
      View in: PubMed   Mentions: 5     Fields:    Translation:Animals
    37. Beneficial effects of stress-dose corticosteroid therapy in canines depend on the severity of staphylococcal pneumonia. Intensive Care Med. 2012 Dec; 38(12):2063-71. Hicks CW, Sweeney DA, Danner RL, Eichacker PQ, Suffredini AF, Feng J, Sun J, Moriyama B, Wesley R, Behrend EN, Solomon SB, Natanson C. PMID: 23111805.
      View in: PubMed   Mentions: 10     Fields:    Translation:Animals
    38. An overview of anthrax infection including the recently identified form of disease in injection drug users. Intensive Care Med. 2012 Jul; 38(7):1092-104. Hicks CW, Sweeney DA, Cui X, Li Y, Eichacker PQ. PMID: 22527064.
      View in: PubMed   Mentions: 37     Fields:    Translation:HumansCells
    39. Efficacy of selective mineralocorticoid and glucocorticoid agonists in canine septic shock. Crit Care Med. 2012 Jan; 40(1):199-207. Hicks CW, Sweeney DA, Danner RL, Eichacker PQ, Suffredini AF, Feng J, Sun J, Behrend EN, Solomon SB, Natanson C. PMID: 21926575.
      View in: PubMed   Mentions: 7     Fields:    Translation:Animals
    40. The potential contributions of lethal and edema toxins to the pathogenesis of anthrax associated shock. Toxins (Basel). 2011 09; 3(9):1185-202. Hicks CW, Cui X, Sweeney DA, Li Y, Barochia A, Eichacker PQ. PMID: 22069762.
      View in: PubMed   Mentions: 11     Fields:    Translation:HumansAnimalsCells
    41. Anthrax infection. Am J Respir Crit Care Med. 2011 Dec 15; 184(12):1333-41. Sweeney DA, Hicks CW, Cui X, Li Y, Eichacker PQ. PMID: 21852539.
      View in: PubMed   Mentions: 59     Fields:    Translation:HumansCells
    42. Anthrax lethal and edema toxins produce different patterns of cardiovascular and renal dysfunction and synergistically decrease survival in canines. J Infect Dis. 2010 Dec 15; 202(12):1885-96. Sweeney DA, Cui X, Solomon SB, Vitberg DA, Migone TS, Scher D, Danner RL, Natanson C, Subramanian GM, Eichacker PQ. PMID: 21067373.
      View in: PubMed   Mentions: 35     Fields:    Translation:Animals
    43. Defining normal adrenal function testing in the intensive care unit setting: a canine study. Crit Care Med. 2010 Feb; 38(2):553-61. Sweeney DA, Natanson C, Banks SM, Solomon SB, Behrend EN. PMID: 20016376.
      View in: PubMed   Mentions: 3     Fields:    Translation:Animals
    44. Antithrombosis Trials: Should we test therapeutic heparin adjusted based on activated partial thromboplastin time in septic shock? Crit Care Med. 2009 Apr; 37(4):1486-7. Barochia AV, Li Y, Cui X, Sweeney DA, Natanson C, Eichacker PQ. PMID: 19318828.
      View in: PubMed   Mentions: 1     Fields:    Translation:Humans
    45. Recombinant human activated protein C, package labeling, and hemorrhage risks. Crit Care Med. 2009 Jan; 37(1):327-9. Sweeney DA, Natanson C, Eichacker PQ. PMID: 19112285.
      View in: PubMed   Mentions: 3     Fields:    Translation:Humans
    46. Once is not enough: clinical trials in sepsis. Intensive Care Med. 2008 Nov; 34(11):1955-60. Sweeney DA, Danner RL, Eichacker PQ, Natanson C. PMID: 18839140.
      View in: PubMed   Mentions: 23     Fields:    Translation:Humans
    47. A 33-year-old man with a white pupil. Clin Infect Dis. 2006 Oct 15; 43(8):1043-4, 1081-2. Suh LH, Sweeney DA, Jun AS. PMID: 16983618.
      View in: PubMed   Mentions:    Fields:    Translation:HumansAnimals
    48. A ten-year-old boy with a pulmonary nodule secondary to Cryptococcus neoformans: case report and review of the literature. Pediatr Infect Dis J. 2003 Dec; 22(12):1089-93. Sweeney DA, Caserta MT, Korones DN, Casadevall A, Goldman DL. PMID: 14688572.
      View in: PubMed   Mentions: 8     Fields:    Translation:HumansAnimals
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