Jennifer Dan

Title(s)Assistant Adjunct Professor, Medicine
SchoolVc-health Sciences-schools
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    Collapse Biography 
    Collapse Education and Training
    Boston University , Boston, MAMD., Ph.D. 05/2010Microbiology, Immunology Training Program
    University of California, San Diego06/2012Internal Medicine Residency PSTP
    University of California, San Diego06/2015Infectious Disease Fellowship
    La Jolla Institute for Immunology03/2018Post-Doctoral Fellowship

    Collapse Research 
    Collapse Research Activities and Funding
    The Immunology of Recurrent Group A Streptococcus Tonsillitis
    NIH K08AI135078May 24, 2018 - Apr 30, 2023
    Role: Principal Investigator

    Collapse Bibliographic 
    Collapse Publications
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. SARS-CoV-2 breakthrough infections enhance T cell response magnitude, breadth, and epitope repertoire. Cell Rep Med. 2024 Jun 18; 5(6):101583. Tarke A, Ramezani-Rad P, Alves Pereira Neto T, Lee Y, Silva-Moraes V, Goodwin B, Bloom N, Siddiqui L, Avalos L, Frazier A, Zhang Z, da Silva Antunes R, Dan J, Crotty S, Grifoni A, Sette A. PMID: 38781962; PMCID: PMC11228552.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansCells
    2. Targets and cross-reactivity of human T cell recognition of common cold coronaviruses. Cell Rep Med. 2023 06 20; 4(6):101088. Tarke A, Zhang Y, Methot N, Narowski TM, Phillips E, Mallal S, Frazier A, Filaci G, Weiskopf D, Dan JM, Premkumar L, Scheuermann RH, Sette A, Grifoni A. PMID: 37295422; PMCID: PMC10242702.
      View in: PubMed   Mentions: 7     Fields:    Translation:HumansCells
    3. Prevalence and risk factors for long COVID after mild disease: A cohort study with a symptomatic control group. J Glob Health. 2023 May 12; 13:06015. Cazé AB, Cerqueira-Silva T, Bomfim AP, de Souza GL, Azevedo AC, Brasil MQ, Santos NR, Khouri R, Dan J, Bandeira AC, Cavalcanti LP, Barral-Netto M, Barral A, Barbosa CG, Boaventura VS. PMID: 37166260; PMCID: PMC10173895.
      View in: PubMed   Mentions: 5     Fields:    Translation:HumansCells
    4. Acute and Postacute COVID-19 Outcomes Among Immunologically Naive Adults During Delta vs Omicron Waves. JAMA Netw Open. 2023 02 01; 6(2):e231181. Doll MK, Waghmare A, Heit A, Levenson Shakoor B, Kimball LE, Ozbek N, Blazevic RL, Mose L, Boonyaratanakornkit J, Stevens-Ayers TL, Cornell K, Sheppard BD, Hampson E, Sharmin F, Goodwin B, Dan JM, Archie T, O'Connor T, Heckerman D, Schmitz F, Boeckh M, Crotty S. PMID: 36853602; PMCID: PMC9975921.
      View in: PubMed   Mentions: 3     Fields:    Translation:HumansCells
    5. Development of Host Immune Response to Bacteriophage in a Lung Transplant Recipient on Adjunctive Phage Therapy for a Multidrug-Resistant Pneumonia. J Infect Dis. 2023 02 01; 227(3):311-316. Dan JM, Lehman SM, Al-Kolla R, Penziner S, Afshar K, Yung G, Golts E, Law N, Logan C, Kovach Z, Mearns G, Schooley RT, Aslam S, Crotty S. PMID: 36082999; PMCID: PMC10152496.
      View in: PubMed   Mentions: 7     Fields:    Translation:HumansCells
    6. Dynamic activity in cis-regulatory elements of leukocytes identifies transcription factor activation and stratifies COVID-19 severity in ICU patients. Cell Rep Med. 2023 02 21; 4(2):100935. Lam MTY, Duttke SH, Odish MF, Le HD, Hansen EA, Nguyen CT, Trescott S, Kim R, Deota S, Chang MW, Patel A, Hepokoski M, Alotaibi M, Rolfsen M, Perofsky K, Warden AS, Foley J, Ramirez SI, Dan JM, Abbott RK, Crotty S, Crotty Alexander LE, Malhotra A, Panda S, Benner CW, Coufal NG. PMID: 36758547; PMCID: PMC9874047.
      View in: PubMed   Mentions: 4     Fields:    Translation:HumansCells
    7. Targets and cross-reactivity of human T cell recognition of Common Cold Coronaviruses. bioRxiv. 2023 Jan 05. Tarke A, Zhang Y, Methot N, Narowski TM, Phillips E, Mallal S, Frazier A, Filaci G, Weiskopf D, Dan JM, Premkumar L, Scheuermann RH, Sette A, Grifoni A. PMID: 36656777; PMCID: PMC9844015.
      View in: PubMed   Mentions:
    8. SARS-CoV-2 spike conformation determines plasma neutralizing activity elicited by a wide panel of human vaccines. Sci Immunol. 2022 12 23; 7(78):eadf1421. Bowen JE, Park YJ, Stewart C, Brown JT, Sharkey WK, Walls AC, Joshi A, Sprouse KR, McCallum M, Tortorici MA, Franko NM, Logue JK, Mazzitelli IG, Nguyen AW, Silva RP, Huang Y, Low JS, Jerak J, Tiles SW, Ahmed K, Shariq A, Dan JM, Zhang Z, Weiskopf D, Sette A, Snell G, Posavad CM, Iqbal NT, Geffner J, Bandera A, Gori A, Sallusto F, Maynard JA, Crotty S, Van Voorhis WC, Simmerling C, Grifantini R, Chu HY, Corti D, Veesler D. PMID: 36356052; PMCID: PMC9765460.
      View in: PubMed   Mentions: 31     Fields:    Translation:HumansCellsPHPublic Health
    9. Defining antigen targets to dissect vaccinia virus and monkeypox virus-specific T cell responses in humans. Cell Host Microbe. 2022 12 14; 30(12):1662-1670.e4. Grifoni A, Zhang Y, Tarke A, Sidney J, Rubiro P, Reina-Campos M, Filaci G, Dan JM, Scheuermann RH, Sette A. PMID: 36463861; PMCID: PMC9718645.
      View in: PubMed   Mentions: 13     Fields:    Translation:HumansCells
    10. Acute and Post-Acute COVID-19 Outcomes Among Immunologically Naïve Adults During Delta Versus Omicron Waves. medRxiv. 2022 Nov 14. Doll MK, Waghmare A, Heit A, Levenson Shakoor B, Kimball LE, Ozbek N, Blazevic RL, Mose L, Boonyaratanakornkit J, Stevens-Ayers TL, Cornell K, Sheppard BD, Hampson E, Sharmin F, Goodwin B, Dan JM, Archie T, O'Connor T, Heckerman D, Schmitz F, Boeckh M, Crotty S. PMID: 36425923; PMCID: PMC9685683.
      View in: PubMed   Mentions:
    11. HIV but Not CMV Replication Alters the Blood Cytokine Network during Early HIV Infection in Men. Viruses. 2022 08 21; 14(8). Vanpouille C, Wells A, Dan JM, Rawlings SA, Little S, Fitzgerald W, Margolis L, Gianella S. PMID: 36016455; PMCID: PMC9416553.
      View in: PubMed   Mentions:    Fields:    Translation:HumansCells
    12. Design and validation of HIV peptide pools for detection of HIV-specific CD4+ and CD8+ T cells. PLoS One. 2022; 17(8):e0268370. Al-Kolla R, Grifoni A, Crotty S, Sette A, Gianella S, Dan J. PMID: 35972938; PMCID: PMC9380920.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansCells
    13. Observations and Perspectives on Adaptive Immunity to Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2). Clin Infect Dis. 2022 08 15; 75(Suppl 1):S24-S29. Dan J, da Silva Antunes R, Grifoni A, Weiskopf D, Crotty S, Sette A. PMID: 35441229; PMCID: PMC9383833.
      View in: PubMed   Mentions: 9     Fields:    Translation:HumansCells
    14. Broadly neutralizing antibodies to SARS-related viruses can be readily induced in rhesus macaques. Sci Transl Med. 2022 08 10; 14(657):eabl9605. He WT, Yuan M, Callaghan S, Musharrafieh R, Song G, Silva M, Beutler N, Lee WH, Yong P, Torres JL, Melo M, Zhou P, Zhao F, Zhu X, Peng L, Huang D, Anzanello F, Ricketts J, Parren M, Garcia E, Ferguson M, Rinaldi W, Rawlings SA, Nemazee D, Smith DM, Briney B, Safonova Y, Rogers TF, Dan JM, Zhang Z, Weiskopf D, Sette A, Crotty S, Irvine DJ, Ward AB, Wilson IA, Burton DR, Andrabi R. PMID: 35947674; PMCID: PMC10069796.
      View in: PubMed   Mentions: 15     Fields:    Translation:HumansAnimalsCells
    15. COVID-19 lung disease shares driver AT2 cytopathic features with Idiopathic pulmonary fibrosis. EBioMedicine. 2022 Aug; 82:104185. Sinha S, Castillo V, Espinoza CR, Tindle C, Fonseca AG, Dan JM, Katkar GD, Das S, Sahoo D, Ghosh P. PMID: 35870428; PMCID: PMC9297827.
      View in: PubMed   Mentions: 19     Fields:    Translation:HumansAnimalsCells
    16. Omicron spike function and neutralizing activity elicited by a comprehensive panel of vaccines. Science. 2022 08 19; 377(6608):890-894. Bowen JE, Addetia A, Dang HV, Stewart C, Brown JT, Sharkey WK, Sprouse KR, Walls AC, Mazzitelli IG, Logue JK, Franko NM, Czudnochowski N, Powell AE, Dellota E, Ahmed K, Ansari AS, Cameroni E, Gori A, Bandera A, Posavad CM, Dan JM, Zhang Z, Weiskopf D, Sette A, Crotty S, Iqbal NT, Corti D, Geffner J, Snell G, Grifantini R, Chu HY, Veesler D. PMID: 35857529; PMCID: PMC9348749.
      View in: PubMed   Mentions: 93     Fields:    Translation:HumansCells
    17. COVID-19 lung disease shares driver AT2 cytopathic features with Idiopathic pulmonary fibrosis. bioRxiv. 2022 Jul 18. Sinha S, Castillo V, Espinoza CR, Tindle C, Fonseca AG, Dan JM, Katkar GD, Das S, Sahoo D, Ghosh P. PMID: 34873597; PMCID: PMC8647648.
      View in: PubMed   Mentions:
    18. Correction to: Increased Peripheral Blood Neutrophil Activation Phenotypes and Neutrophil Extracellular Trap Formation in Critically Ill Coronavirus Disease 2019 Patients: A Case Series and Review of the Literature. Clin Infect Dis. 2022 May 30; 74(10):1889-1890. Masso-Silva JA, Moshensky A, Lam MTY, Odish M, Patel A, Xu L, Hansen E, Trescott S, Nguyen C, Kim R, Perofsky K, Perera S, Ma L, Pham J, Rolfsen M, Olay J, Shin J, Dan JM, Abbott R, Ramirez S, Alexander TH, Lin GY, Fuentes AL, Advani I, Gunge D, Pretorius V, Malhotra A, Sun X, Duran J, Hepokoski M, Crotty S, Coufal NG, Meier A, Crotty Alexander LE. PMID: 35416961; PMCID: PMC9327099.
      View in: PubMed   Mentions: 5     Fields:    
    19. Humoral and cellular immune memory to four COVID-19 vaccines. Cell. 2022 07 07; 185(14):2434-2451.e17. Zhang Z, Mateus J, Coelho CH, Dan JM, Moderbacher CR, Gálvez RI, Cortes FH, Grifoni A, Tarke A, Chang J, Escarrega EA, Kim C, Goodwin B, Bloom NI, Frazier A, Weiskopf D, Sette A, Crotty S. PMID: 35764089; PMCID: PMC9135677.
      View in: PubMed   Mentions: 232     Fields:    Translation:HumansCells
    20. Preserved SARS-CoV-2 Vaccine Cell-Mediated Immunogenicity in Patients With Inflammatory Bowel Disease on Immune-Modulating Therapies. Clin Transl Gastroenterol. 2022 04 01; 13(4):e00484. Boland BS, Goodwin B, Zhang Z, Bloom N, Kato Y, Neill J, Le H, Tysl T, Collins AE, Dulai PS, Singh S, Nguyen NH, Grifoni A, Sette A, Weiskopf D, Chang JT, Dan JM. PMID: 35347100; PMCID: PMC9038482.
      View in: PubMed   Mentions:    Fields:    Translation:HumansCells
    21. Humoral and cellular immune memory to four COVID-19 vaccines. bioRxiv. 2022 Mar 21. Zhang Z, Mateus J, Coelho CH, Dan JM, Moderbacher CR, Gálvez RI, Cortes FH, Grifoni A, Tarke A, Chang J, Escarrega EA, Kim C, Goodwin B, Bloom NI, Frazier A, Weiskopf D, Sette A, Crotty S. PMID: 35350195; PMCID: PMC8963692.
      View in: PubMed   Mentions:
    22. Omicron BA.1 and BA.2 neutralizing activity elicited by a comprehensive panel of human vaccines. bioRxiv. 2022 Mar 16. Bowen JE, Sprouse KR, Walls AC, Mazzitelli IG, Logue JK, Franko NM, Ahmed K, Shariq A, Cameroni E, Gori A, Bandera A, Posavad CM, Dan JM, Zhang Z, Weiskopf D, Sette A, Crotty S, Iqbal NT, Corti D, Geffner J, Grifantini R, Chu HY, Veesler D. PMID: 35313570; PMCID: PMC8936098.
      View in: PubMed   Mentions:
    23. Increased Peripheral Blood Neutrophil Activation Phenotypes and Neutrophil Extracellular Trap Formation in Critically Ill Coronavirus Disease 2019 (COVID-19) Patients: A Case Series and Review of the Literature. Clin Infect Dis. 2022 02 11; 74(3):479-489. Masso-Silva JA, Moshensky A, Lam MTY, Odish MF, Patel A, Xu L, Hansen E, Trescott S, Nguyen C, Kim R, Perofsky K, Perera S, Ma L, Pham J, Rolfsen M, Olay J, Shin J, Dan JM, Abbott RK, Ramirez S, Alexander TH, Lin GY, Fuentes AL, Advani I, Gunge D, Pretorius V, Malhotra A, Sun X, Duran J, Hepokoski M, Crotty S, Coufal NG, Meier A, Crotty Alexander LE. PMID: 33988226; PMCID: PMC8241438.
      View in: PubMed   Mentions: 63     Fields:    Translation:HumansCells
    24. Development of a T cell-based immunodiagnostic system to effectively distinguish SARS-CoV-2 infection and COVID-19 vaccination status. Cell Host Microbe. 2022 03 09; 30(3):388-399.e3. Yu ED, Wang E, Garrigan E, Goodwin B, Sutherland A, Tarke A, Chang J, Gálvez RI, Mateus J, Ramirez SI, Rawlings SA, Smith DM, Filaci G, Frazier A, Weiskopf D, Dan JM, Crotty S, Grifoni A, Sette A, da Silva Antunes R. PMID: 35172129; PMCID: PMC8824221.
      View in: PubMed   Mentions: 23     Fields:    Translation:HumansCellsPHPublic Health
    25. SARS-CoV-2 vaccination induces immunological T cell memory able to cross-recognize variants from Alpha to Omicron. Cell. 2022 03 03; 185(5):847-859.e11. Tarke A, Coelho CH, Zhang Z, Dan JM, Yu ED, Methot N, Bloom NI, Goodwin B, Phillips E, Mallal S, Sidney J, Filaci G, Weiskopf D, da Silva Antunes R, Crotty S, Grifoni A, Sette A. PMID: 35139340; PMCID: PMC8784649.
      View in: PubMed   Mentions: 414     Fields:    Translation:HumansCellsPHPublic Health
    26. Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Immunity and Reinfection. Clin Infect Dis. 2021 11 02; 73(9):e2992-e2994. Dan J, Mehta S. PMID: 33386403; PMCID: PMC7799243.
      View in: PubMed   Mentions: 6     Fields:    Translation:HumansCells
    27. Low-dose mRNA-1273 COVID-19 vaccine generates durable memory enhanced by cross-reactive T cells. Science. 2021 Oct 22; 374(6566):eabj9853. Mateus J, Dan JM, Zhang Z, Rydyznski Moderbacher C, Lammers M, Goodwin B, Sette A, Crotty S, Weiskopf D. PMID: 34519540; PMCID: PMC8542617.
      View in: PubMed   Mentions: 172     Fields:    Translation:HumansCellsPHPublic Health
    28. Profiling Transcription Initiation in Peripheral Leukocytes Reveals Severity-Associated Cis-Regulatory Elements in Critical COVID-19. bioRxiv. 2021 Aug 24. Lam MTY, Duttke SH, Odish MF, Le HD, Hansen EA, Nguyen CT, Trescott S, Kim R, Deota S, Chang MW, Patel A, Hepokoski M, Alotaibi M, Rolfsen M, Perofsky K, Warden AS, Foley J, Ramirez SI, Dan JM, Abbott RK, Crotty S, Crotty Alexander LE, Malhotra A, Panda S, Benner CW, Coufal NG. PMID: 34462742; PMCID: PMC8404884.
      View in: PubMed   Mentions: 3  
    29. Successful heart and kidney transplantation from a deceased donor with PCR positive COVID-19. Transpl Infect Dis. 2021 10; 23(5):e13707. Sigler R, Shah M, Schnickel G, Pretorius V, Dan J, Taremi M, Aslam S. PMID: 34322981; PMCID: PMC8420301.
      View in: PubMed   Mentions: 11     Fields:    Translation:HumansCells
    30. Differential T-Cell Reactivity to Endemic Coronaviruses and SARS-CoV-2 in Community and Health Care Workers. J Infect Dis. 2021 07 02; 224(1):70-80. da Silva Antunes R, Pallikkuth S, Williams E, Dawen Yu E, Mateus J, Quiambao L, Wang E, Rawlings SA, Stadlbauer D, Jiang K, Amanat F, Arnold D, Andrews D, Fuego I, Dan JM, Grifoni A, Weiskopf D, Krammer F, Crotty S, Hoffer ME, Pahwa SG, Sette A. PMID: 33822097; PMCID: PMC8083569.
      View in: PubMed   Mentions: 47     Fields:    Translation:HumansCellsPHPublic Health
    31. Impact of SARS-CoV-2 variants on the total CD4+ and CD8+ T cell reactivity in infected or vaccinated individuals. Cell Rep Med. 2021 07 20; 2(7):100355. Tarke A, Sidney J, Methot N, Yu ED, Zhang Y, Dan JM, Goodwin B, Rubiro P, Sutherland A, Wang E, Frazier A, Ramirez SI, Rawlings SA, Smith DM, da Silva Antunes R, Peters B, Scheuermann RH, Weiskopf D, Crotty S, Grifoni A, Sette A. PMID: 34230917; PMCID: PMC8249675.
      View in: PubMed   Mentions: 385     Fields:    Translation:HumansCells
    32. AI-guided discovery of the invariant host response to viral pandemics. EBioMedicine. 2021 Jun; 68:103390. Sahoo D, Katkar GD, Khandelwal S, Behroozikhah M, Claire A, Castillo V, Tindle C, Fuller M, Taheri S, Rogers TF, Beutler N, Ramirez SI, Rawlings SA, Pretorius V, Smith DM, Burton DR, Alexander LEC, Duran J, Crotty S, Dan JM, Das S, Ghosh P. PMID: 34127431; PMCID: PMC8193764.
      View in: PubMed   Mentions: 23     Fields:    Translation:HumansAnimalsPHPublic Health
    33. AI-guided discovery of the invariant host response to viral pandemics. bioRxiv. 2021 Apr 13. Sahoo D, Katkar GD, Khandelwal S, Behroozikhah M, Claire A, Castillo V, Tindle C, Fuller M, Taheri S, Rogers TF, Beutler N, Ramirez SI, Rawlings SA, Pretorius V, Smith DM, Burton DR, Alexander LEC, Duran J, Crotty S, Dan JM, Das S, Ghosh P. PMID: 32995790; PMCID: PMC7523116.
      View in: PubMed   Mentions:
    34. Elongated neutrophil-derived structures are blood-borne microparticles formed by rolling neutrophils during sepsis. J Exp Med. 2021 03 01; 218(3). Marki A, Buscher K, Lorenzini C, Meyer M, Saigusa R, Fan Z, Yeh YT, Hartmann N, Dan JM, Kiosses WB, Golden GJ, Ganesan R, Winkels H, Orecchioni M, McArdle S, Mikulski Z, Altman Y, Bui J, Kronenberg M, Chien S, Esko JD, Nizet V, Smalley D, Roth J, Ley K. PMID: 33275138; PMCID: PMC7721910.
      View in: PubMed   Mentions: 23     Fields:    Translation:HumansAnimalsCells
    35. Negligible impact of SARS-CoV-2 variants on CD4 + and CD8 + T cell reactivity in COVID-19 exposed donors and vaccinees. bioRxiv. 2021 Mar 01. Tarke A, Sidney J, Methot N, Zhang Y, Dan JM, Goodwin B, Rubiro P, Sutherland A, da Silva Antunes R, Frazier A, Rawlings SA, Smith DM, Peters B, Scheuermann RH, Weiskopf D, Crotty S, Grifoni A, Sette A. PMID: 33688655; PMCID: PMC7941626.
      View in: PubMed   Mentions: 9  
    36. Comprehensive analysis of T cell immunodominance and immunoprevalence of SARS-CoV-2 epitopes in COVID-19 cases. Cell Rep Med. 2021 02 16; 2(2):100204. Tarke A, Sidney J, Kidd CK, Dan JM, Ramirez SI, Yu ED, Mateus J, da Silva Antunes R, Moore E, Rubiro P, Methot N, Phillips E, Mallal S, Frazier A, Rawlings SA, Greenbaum JA, Peters B, Smith DM, Crotty S, Weiskopf D, Grifoni A, Sette A. PMID: 33521695; PMCID: PMC7837622.
      View in: PubMed   Mentions: 306     Fields:    
    37. Differential T cell reactivity to seasonal coronaviruses and SARS-CoV-2 in community and health care workers. medRxiv. 2021 Jan 15. da Silva Antunes R, Pallikkuth S, Williams E, Yu ED, Mateus J, Quiambao L, Wang E, Rawlings SA, Stadlbauer D, Jiang K, Amanat F, Arnold D, Andrews D, Fuego I, Dan JM, Grifoni A, Weiskopf D, Krammer F, Crotty S, Hoffer ME, Pahwa SG, Sette A. PMID: 33469594; PMCID: PMC7814840.
      View in: PubMed   Mentions:
    38. Immunological memory to SARS-CoV-2 assessed for up to 8 months after infection. Science. 2021 02 05; 371(6529). Dan JM, Mateus J, Kato Y, Hastie KM, Yu ED, Faliti CE, Grifoni A, Ramirez SI, Haupt S, Frazier A, Nakao C, Rayaprolu V, Rawlings SA, Peters B, Krammer F, Simon V, Saphire EO, Smith DM, Weiskopf D, Sette A, Crotty S. PMID: 33408181; PMCID: PMC7919858.
      View in: PubMed   Mentions: 1524     Fields:    Translation:HumansCells
    39. Immunological memory to SARS-CoV-2 assessed for up to eight months after infection. bioRxiv. 2020 Dec 18. Dan JM, Mateus J, Kato Y, Hastie KM, Yu ED, Faliti CE, Grifoni A, Ramirez SI, Haupt S, Frazier A, Nakao C, Rayaprolu V, Rawlings SA, Peters B, Krammer F, Simon V, Saphire EO, Smith DM, Weiskopf D, Sette A, Crotty S. PMID: 33442687; PMCID: PMC7805444.
      View in: PubMed   Mentions: 3  
    40. Comprehensive analysis of T cell immunodominance and immunoprevalence of SARS-CoV-2 epitopes in COVID-19 cases. bioRxiv. 2020 Dec 09. Tarke A, Sidney J, Kidd CK, Dan JM, Ramirez SI, Yu ED, Mateus J, da Silva Antunes R, Moore E, Rubiro P, Methot N, Phillips E, Mallal S, Frazier A, Rawlings SA, Greenbaum JA, Peters B, Smith DM, Crotty S, Weiskopf D, Grifoni A, Sette A. PMID: 33330869; PMCID: PMC7743077.
      View in: PubMed   Mentions:
    41. Antigen-Specific Adaptive Immunity to SARS-CoV-2 in Acute COVID-19 and Associations with Age and Disease Severity. Cell. 2020 11 12; 183(4):996-1012.e19. Rydyznski Moderbacher C, Ramirez SI, Dan JM, Grifoni A, Hastie KM, Weiskopf D, Belanger S, Abbott RK, Kim C, Choi J, Kato Y, Crotty EG, Kim C, Rawlings SA, Mateus J, Tse LPV, Frazier A, Baric R, Peters B, Greenbaum J, Ollmann Saphire E, Smith DM, Sette A, Crotty S. PMID: 33010815; PMCID: PMC7494270.
      View in: PubMed   Mentions: 1064     Fields:    Translation:HumansCellsPHPublic Health
    42. Selective and cross-reactive SARS-CoV-2 T cell epitopes in unexposed humans. Science. 2020 10 02; 370(6512):89-94. Mateus J, Grifoni A, Tarke A, Sidney J, Ramirez SI, Dan JM, Burger ZC, Rawlings SA, Smith DM, Phillips E, Mallal S, Lammers M, Rubiro P, Quiambao L, Sutherland A, Yu ED, da Silva Antunes R, Greenbaum J, Frazier A, Markmann AJ, Premkumar L, de Silva A, Peters B, Crotty S, Sette A, Weiskopf D. PMID: 32753554; PMCID: PMC7574914.
      View in: PubMed   Mentions: 671     Fields:    Translation:HumansCellsPHPublic Health
    43. Targets of T Cell Responses to SARS-CoV-2 Coronavirus in Humans with COVID-19 Disease and Unexposed Individuals. Cell. 2020 06 25; 181(7):1489-1501.e15. Grifoni A, Weiskopf D, Ramirez SI, Mateus J, Dan JM, Moderbacher CR, Rawlings SA, Sutherland A, Premkumar L, Jadi RS, Marrama D, de Silva AM, Frazier A, Carlin AF, Greenbaum JA, Peters B, Krammer F, Smith DM, Crotty S, Sette A. PMID: 32473127; PMCID: PMC7237901.
      View in: PubMed   Mentions: 2167     Fields:    Translation:HumansCellsPHPublic Health
    44. Successful optimization of antiretroviral regimens in treatment-experienced people living with HIV undergoing liver transplantation. Transpl Infect Dis. 2019 Dec; 21(6):e13174. Waldman G, Rawlings SA, Kerr J, Vodkin I, Aslam S, Logan C, Dan J, Mehta S, Hill L, Karris MY. PMID: 31520554; PMCID: PMC7510623.
      View in: PubMed   Mentions: 2     Fields:    Translation:Humans
    45. Recurrent group A Streptococcus tonsillitis is an immunosusceptibility disease involving antibody deficiency and aberrant TFH cells. Sci Transl Med. 2019 02 06; 11(478). Dan JM, Havenar-Daughton C, Kendric K, Al-Kolla R, Kaushik K, Rosales SL, Anderson EL, LaRock CN, Vijayanand P, Seumois G, Layfield D, Cutress RI, Ottensmeier CH, Lindestam Arlehamn CS, Sette A, Nizet V, Bothwell M, Brigger M, Crotty S. PMID: 30728285; PMCID: PMC6561727.
      View in: PubMed   Mentions: 69     Fields:    Translation:HumansCells
    46. Heart transplantation outcomes for rheumatic heart disease: Analysis of international registry data. Clin Transplant. 2018 12; 32(12):e13439. Dan JM, Silva Enciso J, Lund LH, Aslam S. PMID: 30383907; PMCID: PMC6384093.
      View in: PubMed   Mentions: 2     Fields:    Translation:Humans
    47. Correction: Definition of Human Epitopes Recognized in Tetanus Toxoid and Development of an Assay Strategy to Detect Ex Vivo Tetanus CD4+ T Cell Responses. PLoS One. 2018; 13(2):e0193382. da Silva Antunes R, Paul S, Sidney J, Weiskopf D, Dan JM, Phillips E, Mallal S, Crotty S, Sette A, Lindestam Arlehamn CS. PMID: 29462188; PMCID: PMC5819815.
      View in: PubMed   Mentions: 2     Fields:    
    48. Comparative analysis of activation induced marker (AIM) assays for sensitive identification of antigen-specific CD4 T cells. PLoS One. 2017; 12(10):e0186998. Reiss S, Baxter AE, Cirelli KM, Dan JM, Morou A, Daigneault A, Brassard N, Silvestri G, Routy JP, Havenar-Daughton C, Crotty S, Kaufmann DE. PMID: 29065175; PMCID: PMC5655442.
      View in: PubMed   Mentions: 169     Fields:    Translation:HumansAnimalsCells
    49. T cells control the generation of nanomolar-affinity anti-glycan antibodies. J Clin Invest. 2017 Apr 03; 127(4):1491-1504. Polonskaya Z, Deng S, Sarkar A, Kain L, Comellas-Aragones M, McKay CS, Kaczanowska K, Holt M, McBride R, Palomo V, Self KM, Taylor S, Irimia A, Mehta SR, Dan JM, Brigger M, Crotty S, Schoenberger SP, Paulson JC, Wilson IA, Savage PB, Finn MG, Teyton L. PMID: 28287405; PMCID: PMC5373877.
      View in: PubMed   Mentions: 43     Fields:    Translation:HumansAnimalsCellsPHPublic Health
    50. Definition of Human Epitopes Recognized in Tetanus Toxoid and Development of an Assay Strategy to Detect Ex Vivo Tetanus CD4+ T Cell Responses. PLoS One. 2017; 12(1):e0169086. da Silva Antunes R, Paul S, Sidney J, Weiskopf D, Dan JM, Phillips E, Mallal S, Crotty S, Sette A, Lindestam Arlehamn CS. PMID: 28081174; PMCID: PMC5230748.
      View in: PubMed   Mentions: 38     Fields:    Translation:HumansCellsCTClinical Trials
    51. Response to Comment on "A Cytokine-Independent Approach To Identify Antigen-Specific Human Germinal Center T Follicular Helper Cells and Rare Antigen-Specific CD4+ T Cells in Blood". J Immunol. 2016 10 01; 197(7):2558. Dan JM, Havenar-Daughton C, Silvestri G, Sette A, Crotty S. PMID: 27638936.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansCells
    52. A Cytokine-Independent Approach To Identify Antigen-Specific Human Germinal Center T Follicular Helper Cells and Rare Antigen-Specific CD4+ T Cells in Blood. J Immunol. 2016 08 01; 197(3):983-93. Dan JM, Lindestam Arlehamn CS, Weiskopf D, da Silva Antunes R, Havenar-Daughton C, Reiss SM, Brigger M, Bothwell M, Sette A, Crotty S. PMID: 27342848; PMCID: PMC4955771.
      View in: PubMed   Mentions: 159     Fields:    Translation:HumansCells
    53. Cytokine-Independent Detection of Antigen-Specific Germinal Center T Follicular Helper Cells in Immunized Nonhuman Primates Using a Live Cell Activation-Induced Marker Technique. J Immunol. 2016 08 01; 197(3):994-1002. Havenar-Daughton C, Reiss SM, Carnathan DG, Wu JE, Kendric K, Torrents de la Peña A, Kasturi SP, Dan JM, Bothwell M, Sanders RW, Pulendran B, Silvestri G, Crotty S. PMID: 27335502; PMCID: PMC4955744.
      View in: PubMed   Mentions: 94     Fields:    Translation:HumansAnimalsCells
    54. Brief Report: Effect of CMV and HIV Transcription on CD57 and PD-1 T-Cell Expression During Suppressive ART. J Acquir Immune Defic Syndr. 2016 06 01; 72(2):133-7. Dan JM, Massanella M, Smith DM, Spina CA, Schrier R, Daar ES, Dube MP, Morris SR, Gianella S. PMID: 26818740; PMCID: PMC4868660.
      View in: PubMed   Mentions: 16     Fields:    Translation:HumansCells
    55. Mycobacterium bovis hip bursitis in a lung transplant recipient. Transpl Infect Dis. 2016 Feb; 18(1):120-4. Dan JM, Crespo M, Silveira FP, Kaplan R, Aslam S. PMID: 26671334.
      View in: PubMed   Mentions:    Fields:    Translation:HumansCells
    56. Methamphetamine Use in HIV-infected Individuals Affects T-cell Function and Viral Outcome during Suppressive Antiretroviral Therapy. Sci Rep. 2015 Aug 24; 5:13179. Massanella M, Gianella S, Schrier R, Dan JM, Pérez-Santiago J, Oliveira MF, Richman DD, Little SJ, Benson CA, Daar ES, Dube MP, Haubrich RH, Smith DM, Morris SR. PMID: 26299251; PMCID: PMC4547398.
      View in: PubMed   Mentions: 33     Fields:    Translation:HumansCells
    57. High-dose tigecycline and colistin for successful treatment of disseminated carbapenem-resistant Klebsiella pneumoniae infection in a liver transplant recipient. BMJ Case Rep. 2014 Nov 05; 2014. Dan JM, Mendler MH, Hemming AW, Aslam S. PMID: 25378111; PMCID: PMC4225299.
      View in: PubMed   Mentions: 2     Fields:    Translation:HumansCells
    58. Adult intussusception secondary to colorectal cancer in a young man: a case report. J Emerg Med. 2012 Dec; 43(6):983-6. Dan JM, Agarwal S, Burke P, Mahoney EJ. PMID: 21262558.
      View in: PubMed   Mentions: 4     Fields:    Translation:Humans
    59. Part 5. Public health and air pollution in Asia (PAPA): a combined analysis of four studies of air pollution and mortality. Res Rep Health Eff Inst. 2010 Nov; (154):377-418. Wong CM, Vichit-Vadakan N, Vajanapoom N, Ostro B, Thach TQ, Chau PY, Chan EK, Chung RY, Ou CQ, Yang L, Peiris JS, Thomas GN, Lam TH, Wong TW, Hedley AJ, Kan H, Chen B, Zhao N, London SJ, Song G, Chen G, Zhang Y, Jiang L, Qian Z, He Q, Lin HM, Kong L, Zhou D, Liang S, Zhu Z, Liao D, Liu W, Bentley CM, Dan J, Wang B, Yang N, Xu S, Gong J, Wei H, Sun H, Qin Z, HEI Health Review Committee. PMID: 21446215.
      View in: PubMed   Mentions: 19     Fields:    Translation:HumansPHPublic Health
    60. Cooperative stimulation of dendritic cells by Cryptococcus neoformans mannoproteins and CpG oligodeoxynucleotides. PLoS One. 2008 Apr 30; 3(4):e2046. Dan JM, Wang JP, Lee CK, Levitz SM. PMID: 18446192; PMCID: PMC2297515.
      View in: PubMed   Mentions: 34     Fields:    Translation:AnimalsCells
    61. Role of the mannose receptor in a murine model of Cryptococcus neoformans infection. Infect Immun. 2008 Jun; 76(6):2362-7. Dan JM, Kelly RM, Lee CK, Levitz SM. PMID: 18391001; PMCID: PMC2423054.
      View in: PubMed   Mentions: 60     Fields:    Translation:AnimalsCells
    62. Contribution of glycosylation to T cell responses stimulated by recombinant Cryptococcus neoformans mannoprotein. J Infect Dis. 2007 Sep 01; 196(5):796-800. Specht CA, Nong S, Dan JM, Lee CK, Levitz SM. PMID: 17674324.
      View in: PubMed   Mentions: 35     Fields:    Translation:AnimalsCells
    63. Prospects for development of vaccines against fungal diseases. Drug Resist Updat. 2006 Jun; 9(3):105-10. Dan JM, Levitz SM. PMID: 16820318.
      View in: PubMed   Mentions: 11     Fields:    Translation:HumansAnimalsCellsPHPublic Health
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