Alessandro Sette

Title(s)Adjunct Professor, Medicine
SchoolVc-health Sciences-schools
Address9500 Gilman Drive #
La Jolla CA 92093
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Respiratory mucosal immune memory to SARS-CoV-2 after infection and vaccination. Nat Commun. 2023 Oct 26; 14(1):6815. Mitsi E, Diniz MO, Reiné J, Collins AM, Robinson RE, Hyder-Wright A, Farrar M, Liatsikos K, Hamilton J, Onyema O, Urban BC, Solórzano C, Belij-Rammerstorfer S, Sheehan E, Lambe T, Draper SJ, Weiskopf D, Sette A, Maini MK, Ferreira DM. PMID: 37884506; PMCID: PMC10603102.
      View in: PubMed   Mentions:    Fields:    Translation:HumansAnimalsCellsPHPublic Health
    2. Multi-omics analysis of mucosal and systemic immunity to SARS-CoV-2 after birth. Cell. 2023 Oct 12; 186(21):4632-4651.e23. Wimmers F, Burrell AR, Feng Y, Zheng H, Arunachalam PS, Hu M, Spranger S, Nyhoff LE, Joshi D, Trisal M, Awasthi M, Bellusci L, Ashraf U, Kowli S, Konvinse KC, Yang E, Blanco M, Pellegrini K, Tharp G, Hagan T, Chinthrajah RS, Nguyen TT, Grifoni A, Sette A, Nadeau KC, Haslam DB, Bosinger SE, Wrammert J, Maecker HT, Utz PJ, Wang TT, Khurana S, Khatri P, Staat MA, Pulendran B. PMID: 37776858.
      View in: PubMed   Mentions: 1     Fields:    
    3. Evaluation of Cross-Immunity to the Mpox Virus Due to Historic Smallpox Vaccination. Vaccines (Basel). 2023 Sep 28; 11(10). Matusali G, Petruccioli E, Cimini E, Colavita F, Bettini A, Tartaglia E, Sbarra S, Meschi S, Lapa D, Francalancia M, Bordi L, Mazzotta V, Coen S, Mizzoni K, Beccacece A, Nicastri E, Pierelli L, Antinori A, Girardi E, Vaia F, Sette A, Grifoni A, Goletti D, Puro V, Maggi F. PMID: 37896943; PMCID: PMC10610801.
      View in: PubMed   Mentions:
    4. Prior vaccination promotes early activation of memory T cells and enhances immune responses during SARS-CoV-2 breakthrough infection. Nat Immunol. 2023 Oct; 24(10):1711-1724. Painter MM, Johnston TS, Lundgreen KA, Santos JJS, Qin JS, Goel RR, Apostolidis SA, Mathew D, Fulmer B, Williams JC, McKeague ML, Pattekar A, Goode A, Nasta S, Baxter AE, Giles JR, Skelly AN, Felley LE, McLaughlin M, Weaver J, Penn Medicine BioBank, Kuthuru O, Dougherty J, Adamski S, Long S, Kee M, Clendenin C, da Silva Antunes R, Grifoni A, Weiskopf D, Sette A, Huang AC, Rader DJ, Hensley SE, Bates P, Greenplate AR, Wherry EJ. PMID: 37735592.
      View in: PubMed   Mentions: 5     Fields:    
    5. Correlative CD4 and CD8 T-cell immunodominance in humans and mice: Implications for preclinical testing. Cell Mol Immunol. 2023 Nov; 20(11):1328-1338. Neto TAP, Sidney J, Grifoni A, Sette A. PMID: 37726420; PMCID: PMC10616275.
      View in: PubMed   Mentions:    Fields:    Translation:HumansAnimalsCells
    6. SARS-CoV-2 spike-specific regulatory T cells (Treg) expand and develop memory in vaccine recipients suggesting a role for immune regulation in preventing severe symptoms in COVID-19. Autoimmunity. 2023 12; 56(1):2259133. Franco A, Song J, Chambers C, Sette A, Grifoni A. PMID: 37724524.
      View in: PubMed   Mentions:    Fields:    Translation:HumansCellsPHPublic Health
    7. A measles virus-based vaccine induces robust chikungunya virus-specific CD4+ T-cell responses in a phase II clinical trial. Vaccine. 2023 10 13; 41(43):6495-6504. Schmitz KS, Comvalius AD, Nieuwkoop NJ, Geers D, Weiskopf D, Ramsauer K, Sette A, Tschismarov R, de Vries RD, de Swart RL. PMID: 37726181.
      View in: PubMed   Mentions:    Fields:    Translation:HumansCellsCTClinical Trials
    8. Stimulation of Potent Humoral and Cellular Immunity via Synthetic Dual-Antigen MVA-Based COVID-19 Vaccine COH04S1 in Cancer Patients Post Hematopoietic Cell Transplantation and Cellular Therapy. Vaccines (Basel). 2023 Sep 15; 11(9). Chiuppesi F, Ortega-Francisco S, Gutierrez MA, Li J, Ly M, Faircloth K, Mack-Onyeike J, La Rosa C, Thomas S, Zhou Q, Drake J, Slape C, Fernando P, Rida W, Kaltcheva T, Grifoni A, Sette A, Patterson A, Dempsey S, Ball B, Ali H, Salhotra A, Stein A, Nathwani N, Rosenzweig M, Nikolaenko L, Al Malki MM, Dickter J, Nanayakkara DD, Puing A, Forman SJ, Taplitz RA, Zaia JA, Nakamura R, Wussow F, Diamond DJ, Dadwal SS. PMID: 37766168; PMCID: PMC10538048.
      View in: PubMed   Mentions:
    9. CD4+ T Cell Responses to Toxoplasma gondii Are a Double-Edged Sword. Vaccines (Basel). 2023 Sep 14; 11(9). El Bissati K, Krishack PA, Zhou Y, Weber CR, Lykins J, Jankovic D, Edelblum KL, Fraczek L, Grover H, Chentoufi AA, Singh G, Reardon C, Dubey JP, Reed S, Alexander J, Sidney J, Sette A, Shastri N, McLeod R. PMID: 37766162; PMCID: PMC10535856.
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    10. A meta-analysis of epitopes in prostate-specific antigens identifies opportunities and knowledge gaps. Hum Immunol. 2023 Nov; 84(11):578-589. Foos G, Blazeska N, Nielsen M, Carter H, Kosaloglu-Yalcin Z, Peters B, Sette A. PMID: 37679223.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    11. Spike protein is a key target for stronger and more persistent T-cell responses-a study of mild and asymptomatic SARS-CoV-2 infection. Int J Infect Dis. 2023 Nov; 136:49-56. Ssali I, Mugaba S, Watelo AK, Bemanzi J, Katende JS, Oluka GK, Ankunda V, Baine C, Kato L, COVID-19 Immunoprofiling Team, Onyachi N, Muwanga M, Jjuuko M, Kayiwa J, Nsereko C, Auma BO, Weiskopf D, Sette A, Lutalo T, Musenero M, Kaleebu P, Serwanga J. PMID: 37683720.
      View in: PubMed   Mentions:    Fields:    Translation:HumansCells
    12. Systemic and mucosal adaptive immunity to SARS-CoV-2 during the Omicron wave in patients with chronic lymphocytic leukemia. Haematologica. 2023 Aug 31. Ingelman-Sundberg HM, Blixt L, Wullimann D, Wu J, Gao Y, Healy K, Muschiol S, Bogdanovic G, Åberg M, Kjellander C, Grifoni A, Sette A, Aleman S, Chen P, Blennow O, Hansson L, Ljunggren HG, Chen MS, Buggert M, Österborg A. PMID: 37646668.
      View in: PubMed   Mentions:    Fields:    
    13. A systems vaccinology resource to develop and test computational models of immunity. bioRxiv. 2023 Aug 29. Shinde P, Soldevila F, Reyna J, Aoki M, Rasmussen M, Willemsen L, Kojima M, Ha B, Greenbaum JA, Overton JA, Guzman-Orozco H, Nili S, Orfield S, Gygi JP, da Silva Antunes R, Sette A, Grant B, Olsen LR, Konstorum A, Guan L, Ay F, Kleinstein SH, Peters B. PMID: 37693565; PMCID: PMC10491180.
      View in: PubMed   Mentions:
    14. Monovalent SARS-CoV-2 mRNA vaccine does not boost Omicron-specific immune response in diabetic and control pediatric patients. J Infect Dis. 2023 Aug 25. Sariol A, Vickers MA, Christensen SM, Weiskopf D, Sette A, Norris AW, Tansey MJ, Pinnaro CT, Perlman S. PMID: 37624979.
      View in: PubMed   Mentions:    Fields:    
    15. Prior cycles of anti-CD20 antibodies affect antibody responses after repeated SARS-CoV-2 mRNA vaccination. JCI Insight. 2023 08 22; 8(16). Asashima H, Kim D, Wang K, Lele N, Buitrago-Pocasangre NC, Lutz R, Cruz I, Raddassi K, Ruff WE, Racke MK, Wilson JE, Givens TS, Grifoni A, Weiskopf D, Sette A, Kleinstein SH, Montgomery RR, Shaw AC, Li F, Fan R, Hafler DA, Tomayko MM, Longbrake EE. PMID: 37606046; PMCID: PMC10543713.
      View in: PubMed   Mentions:    Fields:    Translation:HumansCellsPHPublic Health
    16. Identification of cow milk epitopes to characterize and quantify disease-specific T cells in allergic children. J Allergy Clin Immunol. 2023 Nov; 152(5):1196-1209. Lewis SA, Sutherland A, Soldevila F, Westernberg L, Aoki M, Frazier A, Maiche S, Erlewyn-Lajeunesse M, Arshad H, Leonard S, Laubach S, Dantzer JA, Wood RA, Sette A, Seumois G, Vijayanand P, Peters B. PMID: 37604312.
      View in: PubMed   Mentions:    Fields:    Translation:HumansAnimals
    17. Corrigendum: Cross-reactive humoral and CD4+ T cell responses to Mu and Gamma SARS-CoV-2 variants in a Colombian population. Front Immunol. 2023; 14:1274753. Martel F, Cuervo-Rojas J, Ángel J, Ariza B, González JM, Ramírez-Santana C, Acosta-Ampudia Y, Murcia-Soriano L, Montoya N, Cardozo-Romero CC, Valderrama-Beltrán SL, Cepeda M, Castellanos JC, Gómez-Restrepo C, Perdomo-Celis F, Gazquez A, Dickson A, Brien JD, Mateus J, Grifoni A, Sette A, Weiskopf D, Franco MA. PMID: 37662943; PMCID: PMC10469294.
      View in: PubMed   Mentions:    Fields:    
    18. An update on studies characterizing adaptive immune responses in SARS-CoV-2 infection and COVID-19 vaccination. Int Immunol. 2023 08 07; 35(8):353-359. da Silva Antunes R, Grifoni A, Frazier A, Weiskopf D, Sette A. PMID: 37148294; PMCID: PMC10406159.
      View in: PubMed   Mentions:    Fields:    Translation:HumansCellsPHPublic Health
    19. Cross-reactive humoral and CD4+ T cell responses to Mu and Gamma SARS-CoV-2 variants in a Colombian population. Front Immunol. 2023; 14:1241038. Martel F, Cuervo-Rojas J, Ángel J, Ariza B, González JM, Ramírez-Santana C, Acosta-Ampudia Y, Murcia-Soriano L, Montoya N, Cardozo-Romero CC, Valderrama-Beltrán SL, Cepeda M, Castellanos JC, Gómez-Restrepo C, Perdomo-Celis F, Gazquez A, Dickson A, Brien JD, Mateus J, Grifoni A, Sette A, Weiskopf D, Franco MA. PMID: 37575243; PMCID: PMC10413264.
      View in: PubMed   Mentions:    Fields:    Translation:HumansCells
    20. T cell reactivity to Bordetella pertussis is highly diverse regardless of childhood vaccination. Cell Host Microbe. 2023 08 09; 31(8):1404-1416.e4. da Silva Antunes R, Garrigan E, Quiambao LG, Dhanda SK, Marrama D, Westernberg L, Wang E, Abawi A, Sutherland A, Armstrong SK, Brickman TJ, Sidney J, Frazier A, Merkel TJ, Peters B, Sette A. PMID: 37490913; PMCID: PMC10528758.
      View in: PubMed   Mentions:    Fields:    Translation:HumansCellsPHPublic Health
    21. T cell deletional tolerance restricts AQP4 but not MOG CNS autoimmunity. Proc Natl Acad Sci U S A. 2023 07 25; 120(30):e2306572120. Sagan SA, Moinfar Z, Moseley CE, Dandekar R, Spencer CM, Verkman AS, Ottersen OP, Sobel RA, Sidney J, Sette A, Anderson MS, Steinman L, Wilson MR, Sabatino JJ, Zamvil SS. PMID: 37463205; PMCID: PMC10372680.
      View in: PubMed   Mentions: 1     Fields:    Translation:Animals
    22. Mpox vaccine and infection-driven human immune signatures: an immunological analysis of an observational study. Lancet Infect Dis. 2023 11; 23(11):1302-1312. Cohn H, Bloom N, Cai GY, Clark JJ, Tarke A, Bermúdez-González MC, Altman DR, Lugo LA, Lobo FP, Marquez S, PVI study group, Chen JQ, Ren W, Qin L, Yates JL, Hunt DT, Lee WT, Crotty S, Krammer F, Grifoni A, Sette A, Simon V, Coelho CH. PMID: 37475115.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansAnimalsCellsPHPublic Health
    23. The Importance of Measuring SARS-CoV-2-Specific T-Cell Responses in an Ongoing Pandemic. Pathogens. 2023 Jun 22; 12(7). Petrone L, Sette A, de Vries RD, Goletti D. PMID: 37513709; PMCID: PMC10385870.
      View in: PubMed   Mentions: 1  
    24. Targets and cross-reactivity of human T cell recognition of common cold coronaviruses. Cell Rep Med. 2023 06 20; 4(6):101088. Tarke A, Zhang Y, Methot N, Narowski TM, Phillips E, Mallal S, Frazier A, Filaci G, Weiskopf D, Dan JM, Premkumar L, Scheuermann RH, Sette A, Grifoni A. PMID: 37295422; PMCID: PMC10242702.
      View in: PubMed   Mentions: 2     Fields:    Translation:HumansCells
    25. Durability of immune responses to mRNA booster vaccination against COVID-19. J Clin Invest. 2023 05 15; 133(10). Arunachalam PS, Lai L, Samaha H, Feng Y, Hu M, Hui HS, Wali B, Ellis M, Davis-Gardner ME, Huerta C, Bechnak K, Bechnak S, Lee M, Litvack MB, Losada C, Grifoni A, Sette A, Zarnitsyna VI, Rouphael N, Suthar MS, Pulendran B. PMID: 36951954; PMCID: PMC10178835.
      View in: PubMed   Mentions: 3     Fields:    Translation:HumansCellsPHPublic Health
    26. Evidence for broad cross-reactivity of the SARS-CoV-2 NSP12-directed CD4+ T-cell response with pre-primed responses directed against common cold coronaviruses. Front Immunol. 2023; 14:1182504. Westphal T, Mader M, Karsten H, Cords L, Knapp M, Schulte S, Hermanussen L, Peine S, Ditt V, Grifoni A, Addo MM, Huber S, Sette A, Lütgehetmann M, Pischke S, Kwok WW, Sidney J, Schulze Zur Wiesch J. PMID: 37215095; PMCID: PMC10196118.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansCells
    27. Memory profiles distinguish cross-reactive and virus-specific T cell immunity to mpox. Cell Host Microbe. 2023 Jun 14; 31(6):928-936.e4. Adamo S, Gao Y, Sekine T, Mily A, Wu J, Storgärd E, Westergren V, Filén F, Treutiger CJ, Sandberg JK, Sällberg M, Bergman P, Llewellyn-Lacey S, Ljunggren HG, Price DA, Ekström AM, Sette A, Grifoni A, Buggert M. PMID: 37236191; PMCID: PMC10211501.
      View in: PubMed   Mentions: 3     Fields:    Translation:HumansCells
    28. Humoral and cellular response induced by a second booster of an inactivated SARS-CoV-2 vaccine in adults. EBioMedicine. 2023 May; 91:104563. Méndez C, Peñaloza HF, Schultz BM, Piña-Iturbe A, Ríos M, Moreno-Tapia D, Pereira-Sánchez P, Leighton D, Orellana C, Covarrubias C, Gálvez NMS, Soto JA, Duarte LF, Rivera-Pérez D, Vázquez Y, Cabrera A, Bustos S, Iturriaga C, Urzua M, Navarrete MS, Rojas Á, Fasce RA, Fernández J, Mora J, Ramírez E, Gaete-Argel A, Acevedo M, Valiente-Echeverría F, Soto-Rifo R, Weiskopf D, Grifoni A, Sette A, Zeng G, Meng W, CoronaVac03CL Study Group, González-Aramundiz JV, González PA, Abarca K, Melo-González F, Bueno SM, Kalergis AM. PMID: 37099842; PMCID: PMC10129368.
      View in: PubMed   Mentions: 2     Fields:    Translation:HumansCellsPHPublic Health
    29. Identification of differentially recognized T cell epitopes in the spectrum of Mtb infection. bioRxiv. 2023 Apr 13. Panda S, Morgan J, Cheng C, Saito M, Gilman RH, Ciobanu N, Crudu V, Catanzaro DG, Catanzaro A, Rodwell T, Perera JSB, Chathuranga T, Gunasena B, DeSilva AD, Peters B, Sette A, Lindestam Arlehamn CS. PMID: 37090558; PMCID: PMC10120689.
      View in: PubMed   Mentions:
    30. Metabolic dysregulation impairs lymphocyte function during severe SARS-CoV-2 infection. Commun Biol. 2023 04 07; 6(1):374. Gurshaney S, Morales-Alvarez A, Ezhakunnel K, Manalo A, Huynh TH, Abe JI, Le NT, Weiskopf D, Sette A, Lupu DS, Gardell SJ, Nguyen H. PMID: 37029220; PMCID: PMC10080180.
      View in: PubMed   Mentions: Translation:HumansCells
    31. IEDB-3D 2.0: Structural data analysis within the Immune Epitope Database. Protein Sci. 2023 04; 32(4):e4605. Mendes M, Mahita J, Blazeska N, Greenbaum J, Ha B, Wheeler K, Wang J, Shackelford D, Sette A, Peters B. PMID: 36806329; PMCID: PMC10022491.
      View in: PubMed   Mentions: 3     Fields:    
    32. Virus-Specific Stem Cell Memory CD8+ T Cells May Indicate a Long-Term Protection against Evolving SARS-CoV-2. Diagnostics (Basel). 2023 Mar 28; 13(7). Aleksova M, Todorova Y, Emilova R, Baymakova M, Yancheva N, Andonova R, Zasheva A, Grifoni A, Weiskopf D, Sette A, Nikolova M. PMID: 37046496; PMCID: PMC10093371.
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    33. Genome-wide characterization of T cell responses to Bordetella pertussis reveals broad reactivity and similar polarization irrespective of childhood vaccination profiles. bioRxiv. 2023 Mar 25. da Silva Antunes R, Garrigan E, Quiambao LG, Dhanda SK, Marrama D, Westernberg L, Wang E, Sutherland A, Armstrong SK, Brickman TJ, Sidney J, Frazier A, Merkel T, Peters B, Sette A. PMID: 36993748; PMCID: PMC10055406.
      View in: PubMed   Mentions:
    34. Characterization of the immune impairment of patients with tuberculosis and COVID-19 coinfection. Int J Infect Dis. 2023 May; 130 Suppl 1:S34-S42. Najafi-Fard S, Aiello A, Navarra A, Cuzzi G, Vanini V, Migliori GB, Gualano G, Cerva C, Grifoni A, Sette A, Vaia F, Palmieri F, Goletti D. PMID: 36944383; PMCID: PMC10027657.
      View in: PubMed   Mentions: 5     Fields:    Translation:HumansCells
    35. SARS-CoV-2 Omicron (B.1.1.529) shows minimal neurotropism in a double-humanized mouse model. Antiviral Res. 2023 04; 212:105580. Alves RPDS, Wang YT, Mikulski Z, McArdle S, Shafee N, Valentine KM, Miller R, Verma SK, Batiz FAS, Maule E, Nguyen MN, Timis J, Mann C, Zandonatti M, Alarcon S, Rowe J, Kronenberg M, Weiskopf D, Sette A, Hastie K, Saphire EO, Festin S, Kim K, Shresta S. PMID: 36940916; PMCID: PMC10027296.
      View in: PubMed   Mentions:    Fields:    Translation:HumansAnimalsCells
    36. Mpox vaccine and infection-driven human immune signatures. medRxiv. 2023 Mar 09. Cohn H, Bloom N, Cai G, Clark J, Tarke A, Bermúdez-González MC, Altman D, Lugo LA, Lobo FP, Marquez S, PVI study group, Chen JQ, Ren W, Qin L, Crotty S, Krammer F, Grifoni A, Sette A, Simon V, Coelho CH. PMID: 36945651; PMCID: PMC10029032.
      View in: PubMed   Mentions:
    37. Imprinting of Gut-Homing Receptors on Mtb-Specific Th1* Cells Is Associated with Reduced Lung Homing after Gavage BCG Vaccination of Rhesus Macaques. mBio. 2023 04 25; 14(2):e0022023. Hoft SG, Kauffman KD, Sakai S, Lindestam Arlehamn CS, Sette A, Hoft DF, Herbert R, Barber DL. PMID: 36880755; PMCID: PMC10127997.
      View in: PubMed   Mentions:    Fields:    Translation:HumansAnimalsCellsPHPublic Health
    38. Impaired SARS-CoV-2 Variant Neutralization and CD8+ T-cell Responses Following 3 Doses of mRNA Vaccines in Myeloma: Correlation with Breakthrough Infections. Blood Cancer Discov. 2023 03 01; 4(2):106-117. Azeem MI, Nooka AK, Shanmugasundaram U, Cheedarla N, Potdar S, Manalo RJ, Moreno A, Switchenko JM, Cheedarla S, Doxie DB, Radzievski R, Ellis ML, Manning KE, Wali B, Valanparambil RM, Maples KT, Baymon E, Kaufman JL, Hofmeister CC, Joseph NS, Lonial S, Roback JD, Sette A, Ahmed R, Suthar MS, Neish AS, Dhodapkar MV, Dhodapkar KM. PMID: 36511813; PMCID: PMC9975771.
      View in: PubMed   Mentions: 5     Fields:    Translation:HumansCells
    39. CD5 expression by dendritic cells directs T cell immunity and sustains immunotherapy responses. Science. 2023 02 17; 379(6633):eabg2752. He M, Roussak K, Ma F, Borcherding N, Garin V, White M, Schutt C, Jensen TI, Zhao Y, Iberg CA, Shah K, Bhatia H, Korenfeld D, Dinkel S, Gray J, Ulezko Antonova A, Ferris S, Donermeyer D, Lindestam Arlehamn C, Gubin MM, Luo J, Gorvel L, Pellegrini M, Sette A, Tung T, Bak R, Modlin RL, Fields RC, Schreiber RD, Allen PM, Klechevsky E. PMID: 36795805; PMCID: PMC10424698.
      View in: PubMed   Mentions: 5     Fields:    Translation:HumansCells
    40. Antigen Discovery for Next-Generation Pertussis Vaccines Using Immunoproteomics and Transposon-Directed Insertion Sequencing. J Infect Dis. 2023 02 14; 227(4):583-591. Gregg KA, Wang Y, Warfel J, Schoenfeld E, Jankowska E, Cipollo JF, Mayho M, Boinett C, Prasad D, Brickman TJ, Armstrong SK, Parkhill J, Da Silva Antunes R, Sette A, Papin JF, Wolf R, Merkel TJ. PMID: 36575950; PMCID: PMC10169431.
      View in: PubMed   Mentions: 2     Fields:    Translation:HumansAnimalsCells
    41. T Cell Responses to SARS-CoV-2. Annu Rev Immunol. 2023 04 26; 41:343-373. Sette A, Sidney J, Crotty S. PMID: 36750314.
      View in: PubMed   Mentions: 13     Fields:    Translation:HumansAnimalsCells
    42. Prior vaccination enhances immune responses during SARS-CoV-2 breakthrough infection with early activation of memory T cells followed by production of potent neutralizing antibodies. bioRxiv. 2023 Feb 06. Painter MM, Johnston TS, Lundgreen KA, Santos JJS, Qin JS, Goel RR, Apostolidis SA, Mathew D, Fulmer B, Williams JC, McKeague ML, Pattekar A, Goode A, Nasta S, Baxter AE, Giles JR, Skelly AN, Felley LE, McLaughlin M, Weaver J, Penn Medicine BioBank, Kuthuru O, Dougherty J, Adamski S, Long S, Kee M, Clendenin C, da Silva Antunes R, Grifoni A, Weiskopf D, Sette A, Huang AC, Rader DJ, Hensley SE, Bates P, Greenplate AR, Wherry EJ. PMID: 36798171; PMCID: PMC9934532.
      View in: PubMed   Mentions:
    43. Corrigendum: Comparison of the frequency and phenotypic profile of Mycobacterium tuberculosis-specific CD4 T cells between the site of disease and blood in pericardial tuberculosis. Front Immunol. 2023; 14:1141704. Du Bruyn E, Ruzive S, Howlett P, Cerrone M, Jacobs AJ, Lindestam Arlehamn CS, Sette A, Sher A, Mayer-Barber KD, Barber DL, Mayosi B, Ntsekhe M, Wilkinson RJ, Riou C. PMID: 36825021; PMCID: PMC9941733.
      View in: PubMed   Mentions:    Fields:    
    44. Systems biological assessment of the temporal dynamics of immunity to a viral infection in the first weeks and months of life. medRxiv. 2023 Jan 31. Wimmers F, Burrell AR, Feng Y, Zheng H, Arunachalam PS, Hu M, Spranger S, Nyhoff L, Joshi D, Trisal M, Awasthi M, Bellusci L, Ashraf U, Kowli S, Konvinse KC, Yang E, Blanco M, Pellegrini K, Tharp G, Hagan T, Chinthrajah RS, Grifoni A, Sette A, Nadeau KC, Haslam DB, Bosinger SE, Wrammert J, Maecker HT, Utz PJ, Wang TT, Khurana S, Khatri P, Staat MA, Pulendran B. PMID: 36778389; PMCID: PMC9915811.
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    45. Positive-strand RNA viruses-a Keystone Symposia report. Ann N Y Acad Sci. 2023 03; 1521(1):46-66. Cable J, Denison MR, Kielian M, Jackson WT, Bartenschlager R, Ahola T, Mukhopadhyay S, Fremont DH, Kuhn RJ, Shannon A, Frazier MN, Yuen KY, Coyne CB, Wolthers KC, Ming GL, Guenther CS, Moshiri J, Best SM, Schoggins JW, Jurado KA, Ebel GD, Schäfer A, Ng LFP, Kikkert M, Sette A, Harris E, Wing PAC, Eggenberger J, Krishnamurthy SR, Mah MG, Meganck RM, Chung D, Maurer-Stroh S, Andino R, Korber B, Perlman S, Shi PY, Bárcena M, Aicher SM, Vu MN, Kenney DJ, Lindenbach BD, Nishida Y, Rénia L, Williams EP. PMID: 36697369; PMCID: PMC10347887.
      View in: PubMed   Mentions:    Fields:    Translation:HumansCellsPHPublic Health
    46. Targets and cross-reactivity of human T cell recognition of Common Cold Coronaviruses. bioRxiv. 2023 Jan 05. Tarke A, Zhang Y, Methot N, Narowski TM, Phillips E, Mallal S, Frazier A, Filaci G, Weiskopf D, Dan JM, Premkumar L, Scheuermann RH, Sette A, Grifoni A. PMID: 36656777; PMCID: PMC9844015.
      View in: PubMed   Mentions:
    47. IEDB and CEDAR: Two Sibling Databases to Serve the Global Scientific Community. Methods Mol Biol. 2023; 2673:133-149. Blazeska N, Kosaloglu-Yalcin Z, Vita R, Peters B, Sette A. PMID: 37258911.
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    134. Correction: Broadly directed SARS-CoV-2-specific CD4+ T cell response includes frequently detected peptide specificities within the membrane and nucleoprotein in patients with acute and resolved COVID-19. PLoS Pathog. 2022 Jan; 18(1):e1010220. Heide J, Schulte S, Kohsar M, Brehm TT, Herrmann M, Karsten H, Marget M, Peine S, Johansson AM, Sette A, Lütgehetmann M, Kwok WW, Sidney J, Schulze Zur Wiesch J. PMID: 34986197; PMCID: PMC8730411.
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    135. Detection of α-Synuclein-Specific T Cells in Parkinson's Disease. Methods Mol Biol. 2022; 2574:123-131. Dhanwani R, Sette A, Lindestam Arlehamn CS. PMID: 36087199.
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    136. Epitope-Specific T Cell Receptor Data and Tools in the Immune Epitope Database. Methods Mol Biol. 2022; 2574:267-280. Chronister W, Sette A, Peters B. PMID: 36087207.
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    137. Central and Peripheral Inflammation: Connecting the Immune Responses of Parkinson's Disease. J Parkinsons Dis. 2022; 12(s1):S129-S136. Williams GP, Schonhoff AM, Sette A, Lindestam Arlehamn CS. PMID: 35754290; PMCID: PMC9535591.
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    138. A promiscuous T cell epitope-based HIV vaccine providing redundant population coverage of the HLA class II elicits broad, polyfunctional T cell responses in nonhuman primates. Vaccine. 2022 01 21; 40(2):239-246. Ribeiro SP, De Moura Mattaraia VG, Almeida RR, Valentine EJG, Sales NS, Ferreira LCS, Sa-Rocha LC, Jacintho LC, Santana VC, Sidney J, Sette A, Rosa DS, Kalil J, Cunha-Neto E. PMID: 34961636.
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    139. CD4+CCR6+ T cells dominate the BCG-induced transcriptional signature. EBioMedicine. 2021 Dec; 74:103746. Singhania A, Dubelko P, Kuan R, Chronister WD, Muskat K, Das J, Phillips EJ, Mallal SA, Seumois G, Vijayanand P, Sette A, Lerm M, Peters B, Lindestam Arlehamn C. PMID: 34902786; PMCID: PMC8671872.
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    140. mRNA vaccines induce durable immune memory to SARS-CoV-2 and variants of concern. Science. 2021 Dec 03; 374(6572):abm0829. Goel RR, Painter MM, Apostolidis SA, Mathew D, Meng W, Rosenfeld AM, Lundgreen KA, Reynaldi A, Khoury DS, Pattekar A, Gouma S, Kuri-Cervantes L, Hicks P, Dysinger S, Hicks A, Sharma H, Herring S, Korte S, Baxter AE, Oldridge DA, Giles JR, Weirick ME, McAllister CM, Awofolaju M, Tanenbaum N, Drapeau EM, Dougherty J, Long S, D'Andrea K, Hamilton JT, McLaughlin M, Williams JC, Adamski S, Kuthuru O, UPenn COVID Processing Unit‡, Frank I, Betts MR, Vella LA, Grifoni A, Weiskopf D, Sette A, Hensley SE, Davenport MP, Bates P, Luning Prak ET, Greenplate AR, Wherry EJ. PMID: 34648302; PMCID: PMC9284784.
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    141. Heterogeneity of human anti-viral immunity shaped by virus, tissue, age, and sex. Cell Rep. 2021 11 30; 37(9):110071. Poon MML, Byington E, Meng W, Kubota M, Matsumoto R, Grifoni A, Weiskopf D, Dogra P, Lam N, Szabo PA, Ural BB, Wells SB, Rosenfeld AM, Brusko MA, Brusko TM, Connors TJ, Sette A, Sims PA, Luning Prak ET, Shen Y, Farber DL. PMID: 34852222; PMCID: PMC8719595.
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    142. SARS-CoV-2 infection generates tissue-localized immunological memory in humans. Sci Immunol. 2021 Nov 19; 6(65):eabl9105. Poon MML, Rybkina K, Kato Y, Kubota M, Matsumoto R, Bloom NI, Zhang Z, Hastie KM, Grifoni A, Weiskopf D, Wells SB, Ural BB, Lam N, Szabo PA, Dogra P, Lee YS, Gray JI, Bradley MC, Brusko MA, Brusko TM, Saphire EO, Connors TJ, Sette A, Crotty S, Farber DL. PMID: 34618554; PMCID: PMC8626868.
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    143. High Frequencies of Functional Virus-Specific CD4+ T Cells in SARS-CoV-2 Subjects With Olfactory and Taste Disorders. Front Immunol. 2021; 12:748881. Mele D, Calastri A, Maiorano E, Cerino A, Sachs M, Oliviero B, Mantovani S, Baldanti F, Bruno R, Benazzo M, Grifoni A, Sette A, Mondelli MU, Varchetta S. PMID: 34858405; PMCID: PMC8631501.
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    144. Recognition of Variants of Concern by Antibodies and T Cells Induced by a SARS-CoV-2 Inactivated Vaccine. Front Immunol. 2021; 12:747830. Melo-González F, Soto JA, González LA, Fernández J, Duarte LF, Schultz BM, Gálvez NMS, Pacheco GA, Ríos M, Vázquez Y, Rivera-Pérez D, Moreno-Tapia D, Iturriaga C, Vallejos OP, Berríos-Rojas RV, Hoppe-Elsholz G, Urzúa M, Bruneau N, Fasce RA, Mora J, Grifoni A, Sette A, Weiskopf D, Zeng G, Meng W, González-Aramundiz JV, González PA, Abarca K, Ramírez E, Kalergis AM, Bueno SM. PMID: 34858404; PMCID: PMC8630786.
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    145. Interferon-γ Release Assay for Accurate Detection of Severe Acute Respiratory Syndrome Coronavirus 2 T-Cell Response. Clin Infect Dis. 2021 11 02; 73(9):e3130-e3132. Murugesan K, Jagannathan P, Pham TD, Pandey S, Bonilla HF, Jacobson K, Parsonnet J, Andrews JR, Weiskopf D, Sette A, Pinsky BA, Singh U, Banaei N. PMID: 33035306; PMCID: PMC7665338.
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    146. Characterization of a library of 20 HBV-specific MHC class II-restricted T cell receptors. Mol Ther Methods Clin Dev. 2021 Dec 10; 23:476-489. Schreiber S, Honz M, Mamozai W, Kurktschiev P, Schiemann M, Witter K, Moore E, Zielinski C, Sette A, Protzer U, Wisskirchen K. PMID: 34853796; PMCID: PMC8605085.
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    147. CD8+ T cells specific for cryptic apoptosis-associated epitopes exacerbate experimental autoimmune encephalomyelitis. Cell Death Dis. 2021 10 29; 12(11):1026. Feizi N, Focaccetti C, Pacella I, Tucci G, Rossi A, Costanza M, Pedotti R, Sidney J, Sette A, La Rocca C, Procaccini C, Matarese G, Barnaba V, Piconese S. PMID: 34716313; PMCID: PMC8556378.
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    148. Low-dose mRNA-1273 COVID-19 vaccine generates durable memory enhanced by cross-reactive T cells. Science. 2021 Oct 22; 374(6566):eabj9853. Mateus J, Dan JM, Zhang Z, Rydyznski Moderbacher C, Lammers M, Goodwin B, Sette A, Crotty S, Weiskopf D. PMID: 34519540; PMCID: PMC8542617.
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    149. Risk assessment of latent tuberculosis infection through a multiplexed cytokine biosensor assay and machine learning feature selection. Sci Rep. 2021 10 15; 11(1):20544. Robison HM, Chapman CA, Zhou H, Erskine CL, Theel E, Peikert T, Lindestam Arlehamn CS, Sette A, Bushell C, Welge M, Zhu R, Bailey RC, Escalante P. PMID: 34654869; PMCID: PMC8520014.
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    150. Prior infection with SARS-CoV-2 boosts and broadens Ad26.COV2.S immunogenicity in a variant-dependent manner. Cell Host Microbe. 2021 11 10; 29(11):1611-1619.e5. Keeton R, Richardson SI, Moyo-Gwete T, Hermanus T, Tincho MB, Benede N, Manamela NP, Baguma R, Makhado Z, Ngomti A, Motlou T, Mennen M, Chinhoyi L, Skelem S, Maboreke H, Doolabh D, Iranzadeh A, Otter AD, Brooks T, Noursadeghi M, Moon JC, Grifoni A, Weiskopf D, Sette A, Blackburn J, Hsiao NY, Williamson C, Riou C, Goga A, Garrett N, Bekker LG, Gray G, Ntusi NAB, Moore PL, Burgers WA. PMID: 34688376; PMCID: PMC8511649.
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    151. Heterogeneity of magnitude, allergen immunodominance, and cytokine polarization of cockroach allergen-specific T cell responses in allergic sensitized children. Clin Transl Allergy. 2021 Oct; 11(8):e12073. da Silva Antunes R, Sutherland A, Frazier A, Schulten V, Pomés A, Glesner J, Calatroni A, Altman MC, Wood RA, O'Connor GT, Pongracic JA, Khurana Hershey GK, Kercsmar CM, Gruchalla RS, Gill M, Liu AH, Zoratti E, Kattan M, Busse PJ, Bacharier LB, Teach SJ, Wheatley LM, Togias A, Busse WW, Jackson DJ, Sette A. PMID: 34691392; PMCID: PMC8514843.
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    152. Germinal center responses to SARS-CoV-2 mRNA vaccines in healthy and immunocompromised individuals. medRxiv. 2021 Sep 21. Lederer K, Parvathaneni K, Painter MM, Bettini E, Agarwal D, Lundgreen KA, Weirick M, Goel RR, Xu X, Drapeau EM, Gouma S, Greenplate AR, Coz CL, Romberg N, Jones L, Rosen M, Besharatian B, Kaminiski M, Weiskopf D, Sette A, Hensley SE, Bates P, Wherry EJ, Naji A, Bhoj V, Locci M. PMID: 34580676; PMCID: PMC8475965.
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    153. Dichotomy between the humoral and cellular responses elicited by mRNA and adenoviral vector vaccines against SARS-CoV-2. medRxiv. 2021 Sep 21. Ukey R, Bruiners N, Mishra H, Mishra PK, McCloskey D, Onyuka A, Chen F, Pinter A, Weiskopf D, Sette A, Roy J, Gaur S, Gennaro ML. PMID: 34580675; PMCID: PMC8475964.
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    154. Broadly directed SARS-CoV-2-specific CD4+ T cell response includes frequently detected peptide specificities within the membrane and nucleoprotein in patients with acute and resolved COVID-19. PLoS Pathog. 2021 09; 17(9):e1009842. Heide J, Schulte S, Kohsar M, Brehm TT, Herrmann M, Karsten H, Marget M, Peine S, Johansson AM, Sette A, Lütgehetmann M, Kwok WW, Sidney J, Schulze Zur Wiesch J. PMID: 34529740; PMCID: PMC8445433.
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    155. Virus-specific T cells for adenovirus infection after stem cell transplantation are highly effective and class II HLA restricted. Blood Adv. 2021 09 14; 5(17):3309-3321. Rubinstein JD, Zhu X, Leemhuis T, Pham G, Ray L, Emberesh S, Jodele S, Thomas S, Cancelas JA, Bollard CM, Hanley PJ, Keller MD, Grimley O, Clark D, Clark T, Lindestam Arlehamn CS, Sette A, Davies SM, Nelson AS, Grimley MS, Lutzko C. PMID: 34473237; PMCID: PMC8525242.
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    156. Cellular and humoral immune responses following SARS-CoV-2 mRNA vaccination in patients with multiple sclerosis on anti-CD20 therapy. Nat Med. 2021 11; 27(11):1990-2001. Apostolidis SA, Kakara M, Painter MM, Goel RR, Mathew D, Lenzi K, Rezk A, Patterson KR, Espinoza DA, Kadri JC, Markowitz DM, E Markowitz C, Mexhitaj I, Jacobs D, Babb A, Betts MR, Prak ETL, Weiskopf D, Grifoni A, Lundgreen KA, Gouma S, Sette A, Bates P, Hensley SE, Greenplate AR, Wherry EJ, Li R, Bar-Or A. PMID: 34522051; PMCID: PMC8604727.
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    157. Identification and Characterization of Rift Valley Fever Virus-Specific T Cells Reveals a Dependence on CD40/CD40L Interactions for Prevention of Encephalitis. J Virol. 2021 11 09; 95(23):e0150621. Barbeau DJ, Cartwright HN, Harmon JR, Spengler JR, Spiropoulou CF, Sidney J, Sette A, McElroy AK. PMID: 34495703; PMCID: PMC8577384.
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    158. Characterization of Conserved and Promiscuous Human Rhinovirus CD4 T Cell Epitopes. Cells. 2021 09 02; 10(9). Gomez-Perosanz M, Fiyouzi T, Fernandez-Arquero M, Sidney J, Sette A, Reinherz EL, Lafuente EM, Reche PA. PMID: 34571943; PMCID: PMC8471592.
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    159. Functional HPV-specific PD-1+ stem-like CD8 T cells in head and neck cancer. Nature. 2021 09; 597(7875):279-284. Eberhardt CS, Kissick HT, Patel MR, Cardenas MA, Prokhnevska N, Obeng RC, Nasti TH, Griffith CC, Im SJ, Wang X, Shin DM, Carrington M, Chen ZG, Sidney J, Sette A, Saba NF, Wieland A, Ahmed R. PMID: 34471285; PMCID: PMC10201342.
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    160. The Cancer Epitope Database and Analysis Resource: A Blueprint for the Establishment of a New Bioinformatics Resource for Use by the Cancer Immunology Community. Front Immunol. 2021; 12:735609. Kosaloglu-Yalçin Z, Blazeska N, Carter H, Nielsen M, Cohen E, Kufe D, Conejo-Garcia J, Robbins P, Schoenberger SP, Peters B, Sette A. PMID: 34504503; PMCID: PMC8421848.
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    161. mRNA Vaccination Induces Durable Immune Memory to SARS-CoV-2 with Continued Evolution to Variants of Concern. bioRxiv. 2021 Aug 23. Goel RR, Painter MM, Apostolidis SA, Mathew D, Meng W, Rosenfeld AM, Lundgreen KA, Reynaldi A, Khoury DS, Pattekar A, Gouma S, Kuri-Cervantes L, Hicks P, Dysinger S, Hicks A, Sharma H, Herring S, Korte S, Baxter AE, Oldridge DA, Giles JR, Weirick ME, McAllister CM, Awofolaju M, Tanenbaum N, Drapeau EM, Dougherty J, Long S, D'Andrea K, Hamilton JT, McLaughlin M, Williams JC, Adamski S, Kuthuru O, UPenn COVID Processing Unit, Frank I, Betts MR, Vella LA, Grifoni A, Weiskopf D, Sette A, Hensley SE, Davenport MP, Bates P, Luning Prak ET, Greenplate AR, Wherry EJ. PMID: 34462751; PMCID: PMC8404899.
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    162. Generation of a Novel SARS-CoV-2 Sub-genomic RNA Due to the R203K/G204R Variant in Nucleocapsid: Homologous Recombination has Potential to Change SARS-CoV-2 at Both Protein and RNA Level. Pathog Immun. 2021; 6(2):27-49. Leary S, Gaudieri S, Parker MD, Chopra A, James I, Pakala S, Alves E, John M, Lindsey BB, Keeley AJ, Rowland-Jones SL, Swanson MS, Ostrov DA, Bubenik JL, Das SR, Sidney J, Sette A, COVID-19 Genomics UK (COG-UK) consortium, de Silva TI, Phillips E, Mallal S. PMID: 34541432; PMCID: PMC8439434.
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    163. PopCover-2.0. Improved Selection of Peptide Sets With Optimal HLA and Pathogen Diversity Coverage. Front Immunol. 2021; 12:728936. Nilsson JB, Grifoni A, Tarke A, Sette A, Nielsen M. PMID: 34484239; PMCID: PMC8416060.
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    164. Rapid induction of antigen-specific CD4+ T cells is associated with coordinated humoral and cellular immunity to SARS-CoV-2 mRNA vaccination. Immunity. 2021 09 14; 54(9):2133-2142.e3. Painter MM, Mathew D, Goel RR, Apostolidis SA, Pattekar A, Kuthuru O, Baxter AE, Herati RS, Oldridge DA, Gouma S, Hicks P, Dysinger S, Lundgreen KA, Kuri-Cervantes L, Adamski S, Hicks A, Korte S, Giles JR, Weirick ME, McAllister CM, Dougherty J, Long S, D'Andrea K, Hamilton JT, Betts MR, Bates P, Hensley SE, Grifoni A, Weiskopf D, Sette A, Greenplate AR, Wherry EJ. PMID: 34453880; PMCID: PMC8361141.
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    165. Profiling Human Cytomegalovirus-Specific T Cell Responses Reveals Novel Immunogenic Open Reading Frames. J Virol. 2021 10 13; 95(21):e0094021. Dhanwani R, Dhanda SK, Pham J, Williams GP, Sidney J, Grifoni A, Picarda G, Lindestam Arlehamn CS, Sette A, Benedict CA. PMID: 34379494; PMCID: PMC8513490.
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    166. Generation of a novel SARS-CoV-2 sub-genomic RNA due to the R203K/G204R variant in nucleocapsid: homologous recombination has potential to change SARS-CoV-2 at both protein and RNA level. bioRxiv. 2021 Aug 06. Leary S, Gaudieri S, Parker MD, Chopra A, James I, Pakala S, Alves E, John M, Lindsey BB, Keeley AJ, Rowland-Jones SL, Swanson MS, Ostrov DA, Bubenik JL, Das S, Sidney J, Sette A, COVID-19 Genomics UK (COG-UK) consortium, de Silva TI, Phillips E, Mallal S. PMID: 33880475; PMCID: PMC8057240.
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    167. Allele-Specific Thresholds of Eluted Ligands for T-Cell Epitope Prediction. Mol Cell Proteomics. 2021; 20:100122. Reardon B, Kosaloglu-Yalçin Z, Paul S, Peters B, Sette A. PMID: 34303001; PMCID: PMC8724920.
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    168. A yeast expressed RBD-based SARS-CoV-2 vaccine formulated with 3M-052-alum adjuvant promotes protective efficacy in non-human primates. Sci Immunol. 2021 07 15; 6(61). Pino M, Abid T, Pereira Ribeiro S, Edara VV, Floyd K, Smith JC, Latif MB, Pacheco-Sanchez G, Dutta D, Wang S, Gumber S, Kirejczyk S, Cohen J, Stammen RL, Jean SM, Wood JS, Connor-Stroud F, Pollet J, Chen WH, Wei J, Zhan B, Lee J, Liu Z, Strych U, Shenvi N, Easley K, Weiskopf D, Sette A, Pollara J, Mielke D, Gao H, Eisel N, LaBranche CC, Shen X, Ferrari G, Tomaras GD, Montefiori DC, Sekaly RP, Vanderford TH, Tomai MA, Fox CB, Suthar MS, Kozlowski PA, Hotez PJ, Paiardini M, Bottazzi ME, Kasturi SP. PMID: 34266981; PMCID: PMC9119307.
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    169. The potential clinical utility of measuring severe acute respiratory syndrome coronavirus 2-specific T-cell responses. Clin Microbiol Infect. 2021 Dec; 27(12):1784-1789. Goletti D, Petrone L, Manissero D, Bertoletti A, Rao S, Ndunda N, Sette A, Nikolayevskyy V. PMID: 34256141; PMCID: PMC8272618.
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    170. Evaluation of ELISA-Based Multiplex Peptides for the Detection of Human Serum Antibodies Induced by Zika Virus Infection across Various Countries. Viruses. 2021 07 08; 13(7). Martinez Viedma MDP, Panossian S, Gifford K, García K, Figueroa I, Parham L, de Moraes L, Nunes Gomes L, García-Salum T, Perret C, Weiskopf D, Tan GS, Augusto Silva A, Boaventura V, Ruiz-Palacios GM, Sette A, De Silva AD, Medina RA, Lorenzana I, Akrami KM, Khouri R, Olson D, Pickett BE. PMID: 34372525; PMCID: PMC8310037.
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    171. Differential T-Cell Reactivity to Endemic Coronaviruses and SARS-CoV-2 in Community and Health Care Workers. J Infect Dis. 2021 07 02; 224(1):70-80. da Silva Antunes R, Pallikkuth S, Williams E, Dawen Yu E, Mateus J, Quiambao L, Wang E, Rawlings SA, Stadlbauer D, Jiang K, Amanat F, Arnold D, Andrews D, Fuego I, Dan JM, Grifoni A, Weiskopf D, Krammer F, Crotty S, Hoffer ME, Pahwa SG, Sette A. PMID: 33822097; PMCID: PMC8083569.
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    172. Impact of SARS-CoV-2 variants on the total CD4+ and CD8+ T cell reactivity in infected or vaccinated individuals. Cell Rep Med. 2021 07 20; 2(7):100355. Tarke A, Sidney J, Methot N, Yu ED, Zhang Y, Dan JM, Goodwin B, Rubiro P, Sutherland A, Wang E, Frazier A, Ramirez SI, Rawlings SA, Smith DM, da Silva Antunes R, Peters B, Scheuermann RH, Weiskopf D, Crotty S, Grifoni A, Sette A. PMID: 34230917; PMCID: PMC8249675.
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    173. HLA-DR Marks Recently Divided Antigen-Specific Effector CD4 T Cells in Active Tuberculosis Patients. J Immunol. 2021 07 15; 207(2):523-533. Tippalagama R, Singhania A, Dubelko P, Lindestam Arlehamn CS, Crinklaw A, Pomaznoy M, Seumois G, deSilva AD, Premawansa S, Vidanagama D, Gunasena B, Goonawardhana NDS, Ariyaratne D, Scriba TJ, Gilman RH, Saito M, Taplitz R, Vijayanand P, Sette A, Peters B, Burel JG. PMID: 34193602; PMCID: PMC8516689.
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    174. Functional inactivation of pulmonary MAIT cells following 5-OP-RU treatment of non-human primates. Mucosal Immunol. 2021 09; 14(5):1055-1066. Sakai S, Lora NE, Kauffman KD, Dorosky DE, Oh S, Namasivayam S, Gomez F, Fleegle JD, Tuberculosis Imaging Program, Arlehamn CSL, Sette A, Sher A, Freeman GJ, Via LE, Barry Iii CE, Barber DL. PMID: 34158594; PMCID: PMC8217205.
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    175. Activation of mTORC1 at late endosomes misdirects T cell fate decision in older individuals. Sci Immunol. 2021 06 18; 6(60). Jin J, Kim C, Xia Q, Gould TM, Cao W, Zhang H, Li X, Weiskopf D, Grifoni A, Sette A, Weyand CM, Goronzy JJ. PMID: 34145066; PMCID: PMC8422387.
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    176. Relationship of SARS-CoV-2-specific CD4 response to COVID-19 severity and impact of HIV-1 and tuberculosis coinfection. J Clin Invest. 2021 06 15; 131(12). Riou C, du Bruyn E, Stek C, Daroowala R, Goliath RT, Abrahams F, Said-Hartley Q, Allwood BW, Hsiao NY, Wilkinson KA, Arlehamn CSL, Sette A, Wasserman S, Wilkinson RJ, HIATUS consortium. PMID: 33945513; PMCID: PMC8203446.
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    177. Profiling SARS-CoV-2 HLA-I peptidome reveals T cell epitopes from out-of-frame ORFs. Cell. 2021 07 22; 184(15):3962-3980.e17. Weingarten-Gabbay S, Klaeger S, Sarkizova S, Pearlman LR, Chen DY, Gallagher KME, Bauer MR, Taylor HB, Dunn WA, Tarr C, Sidney J, Rachimi S, Conway HL, Katsis K, Wang Y, Leistritz-Edwards D, Durkin MR, Tomkins-Tinch CH, Finkel Y, Nachshon A, Gentili M, Rivera KD, Carulli IP, Chea VA, Chandrashekar A, Bozkus CC, Carrington M, MGH COVID-19 Collection & Processing Team, Bhardwaj N, Barouch DH, Sette A, Maus MV, Rice CM, Clauser KR, Keskin DB, Pregibon DC, Hacohen N, Carr SA, Abelin JG, Saeed M, Sabeti PC. PMID: 34171305; PMCID: PMC8173604.
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    178. Pre-existing T Cell Memory against Zika Virus. J Virol. 2021 05 24; 95(12). Schouest B, Grifoni A, Pham J, Mateus J, Sydney J, Brien JD, De Silva AD, Balmaseda A, Harris E, Sette A, Weiskopf D. PMID: 33789994; PMCID: PMC8316092.
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    179. SARS-CoV-2 human T cell epitopes: Adaptive immune response against COVID-19. Cell Host Microbe. 2021 07 14; 29(7):1076-1092. Grifoni A, Sidney J, Vita R, Peters B, Crotty S, Weiskopf D, Sette A. PMID: 34237248; PMCID: PMC8139264.
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    180. Tissue-resident-like CD4+ T cells secreting IL-17 control Mycobacterium tuberculosis in the human lung. J Clin Invest. 2021 05 17; 131(10). Ogongo P, Tezera LB, Ardain A, Nhamoyebonde S, Ramsuran D, Singh A, Ng'oepe A, Karim F, Naidoo T, Khan K, Dullabh KJ, Fehlings M, Lee BH, Nardin A, Lindestam Arlehamn CS, Sette A, Behar SM, Steyn AJ, Madansein R, Kløverpris HN, Elkington PT, Leslie A. PMID: 33848273; PMCID: PMC8121523.
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    184. A system-view of Bordetella pertussis booster vaccine responses in adults primed with whole-cell versus acellular vaccine in infancy. JCI Insight. 2021 04 08; 6(7). da Silva Antunes R, Soldevila F, Pomaznoy M, Babor M, Bennett J, Tian Y, Khalil N, Qian Y, Mandava A, Scheuermann RH, Cortese M, Pulendran B, Petro CD, Gilkes AP, Purcell LA, Sette A, Peters B. PMID: 33690224; PMCID: PMC8119213.
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    187. An immunologically friendly classification of non-peptidic ligands. Database (Oxford). 2021 03 27; 2021. Edwards L, Jackson R, Overton JA, Vita R, Blazeska N, Peters B, Sette A. PMID: 33772585; PMCID: PMC8001080.
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    188. Development of nasal allergen challenge with cockroach in children with asthma. Pediatr Allergy Immunol. 2021 07; 32(5):971-979. Rudman Spergel AK, Sever ML, Johnson J, Gill MA, Schulten V, Frazier A, Kercsmar CM, Lovinsky-Desir S, Searing DA, Sette A, Shao B, Teach SJ, Gern JE, Busse WW, Togias A, Wood RA, Liu AH, National Institute of Allergy and Infectious Diseases Inner City Asthma Consortium. PMID: 33606312; PMCID: PMC8503840.
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    190. Immune Memory in Mild COVID-19 Patients and Unexposed Donors Reveals Persistent T Cell Responses After SARS-CoV-2 Infection. Front Immunol. 2021; 12:636768. Ansari A, Arya R, Sachan S, Jha SN, Kalia A, Lall A, Sette A, Grifoni A, Weiskopf D, Coshic P, Sharma A, Gupta N. PMID: 33777028; PMCID: PMC7991090.
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    191. Coinfection of tuberculosis and COVID-19 limits the ability to in vitro respond to SARS-CoV-2. Int J Infect Dis. 2021 Dec; 113 Suppl 1:S82-S87. Petrone L, Petruccioli E, Vanini V, Cuzzi G, Gualano G, Vittozzi P, Nicastri E, Maffongelli G, Grifoni A, Sette A, Ippolito G, Migliori GB, Palmieri F, Goletti D. PMID: 33713816; PMCID: PMC7944764.
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    192. Classical CD4 T cells as the cornerstone of antimycobacterial immunity. Immunol Rev. 2021 05; 301(1):10-29. Morgan J, Muskat K, Tippalagama R, Sette A, Burel J, Lindestam Arlehamn CS. PMID: 33751597; PMCID: PMC8252593.
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    193. Negligible impact of SARS-CoV-2 variants on CD4 + and CD8 + T cell reactivity in COVID-19 exposed donors and vaccinees. bioRxiv. 2021 Mar 01. Tarke A, Sidney J, Methot N, Zhang Y, Dan JM, Goodwin B, Rubiro P, Sutherland A, da Silva Antunes R, Frazier A, Rawlings SA, Smith DM, Peters B, Scheuermann RH, Weiskopf D, Crotty S, Grifoni A, Sette A. PMID: 33688655; PMCID: PMC7941626.
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    196. Differential Longevity of Memory CD4 and CD8 T Cells in a Cohort of the Mothers With a History of ZIKV Infection and Their Children. Front Immunol. 2021; 12:610456. Badolato-Corrêa J, Carvalho FR, Paiva IA, Familiar-Macedo D, Dias HG, Pauvolid-Corrêa A, Fernandes-Santos C, Lima MDRQ, Gandini M, Silva AA, Baeta Cavalcanti SM, de Oliveira SA, de Oliveira Vianna RA, de Azeredo EL, Cardoso CAA, Grifoni A, Sette A, Weiskopf D, de-Oliveira-Pinto LM. PMID: 33679748; PMCID: PMC7928292.
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    197. The role of immune-mediated alterations and disorders in ALS disease. Hum Immunol. 2021 Mar; 82(3):155-161. Rodrigues Lima-Junior J, Sulzer D, Lindestam Arlehamn CS, Sette A. PMID: 33583639; PMCID: PMC7942756.
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    198. IgG Epitopes Processed and Presented by IgG+ B Cells Induce Suppression by Human Thymic-Derived Regulatory T Cells. J Immunol. 2021 03 15; 206(6):1194-1203. Hsieh LE, Sidney J, Burns JC, Boyle DL, Firestein GS, Altman Y, Sette A, Franco A. PMID: 33579724; PMCID: PMC7939040.
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    199. IgE and T Cell Reactivity to a Comprehensive Panel of Cockroach Allergens in Relation to Disease. Front Immunol. 2020; 11:621700. Pomés A, Schulten V, Glesner J, da Silva Antunes R, Sutherland A, Bacharier LB, Beigelman A, Busse P, Frazier A, Sette A. PMID: 33643303; PMCID: PMC7902920.
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    200. Functional Analysis of Immune Signature Genes in Th1* Memory Cells Links ISOC1 and Pyrimidine Metabolism to IFN-γ and IL-17 Production. J Immunol. 2021 03 15; 206(6):1181-1193. Kushnareva Y, Mathews IT, Andreyev AY, Altay G, Lindestam Arlehamn CS, Pandurangan V, Nilsson R, Jain M, Sette A, Peters B, Sharma S. PMID: 33547171; PMCID: PMC7946769.
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    201. Evaluation of the Expression of CCR5 and CX3CR1 Receptors and Correlation with the Functionality of T Cells in Women infected with ZIKV during Pregnancy. Viruses. 2021 01 28; 13(2). Familiar-Macedo D, Amancio Paiva I, Badolato-Corrêa da Silva J, de Carvalho FR, Dias HG, Pauvolid-Corrêa A, Dos Santos CF, Gandini M, Silva AA, Baeta Cavalcanti SM, Artimos de Oliveira S, Artimos de Oliveira Vianna R, Leal de Azeredo E, Grifoni A, Sette A, Weiskopf D, Araújo Cardoso CA, de-Oliveira-Pinto LM. PMID: 33525328; PMCID: PMC7912595.
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    202. Comprehensive analysis of T cell immunodominance and immunoprevalence of SARS-CoV-2 epitopes in COVID-19 cases. Cell Rep Med. 2021 02 16; 2(2):100204. Tarke A, Sidney J, Kidd CK, Dan JM, Ramirez SI, Yu ED, Mateus J, da Silva Antunes R, Moore E, Rubiro P, Methot N, Phillips E, Mallal S, Frazier A, Rawlings SA, Greenbaum JA, Peters B, Smith DM, Crotty S, Weiskopf D, Grifoni A, Sette A. PMID: 33521695; PMCID: PMC7837622.
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    203. SARS-CoV-2 induces robust germinal center CD4 T follicular helper cell responses in rhesus macaques. Nat Commun. 2021 01 22; 12(1):541. Shaan Lakshmanappa Y, Elizaldi SR, Roh JW, Schmidt BA, Carroll TD, Weaver KD, Smith JC, Verma A, Deere JD, Dutra J, Stone M, Franz S, Sammak RL, Olstad KJ, Rachel Reader J, Ma ZM, Nguyen NK, Watanabe J, Usachenko J, Immareddy R, Yee JL, Weiskopf D, Sette A, Hartigan-O'Connor D, McSorley SJ, Morrison JH, Tran NK, Simmons G, Busch MP, Kozlowski PA, Van Rompay KKA, Miller CJ, Iyer SS. PMID: 33483492; PMCID: PMC7822826.
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    204. PD-1 blockade exacerbates Mycobacterium tuberculosis infection in rhesus macaques. Sci Immunol. 2021 01 15; 6(55). Kauffman KD, Sakai S, Lora NE, Namasivayam S, Baker PJ, Kamenyeva O, Foreman TW, Nelson CE, Oliveira-de-Souza D, Vinhaes CL, Yaniv Z, Lindestam Arleham CS, Sette A, Freeman GJ, Moore R, NIAID/DIR Tuberculosis Imaging Program, Sher A, Mayer-Barber KD, Andrade BB, Kabat J, Via LE, Barber DL. PMID: 33452107; PMCID: PMC8300572.
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    208. The TCR repertoire of α-synuclein-specific T cells in Parkinson's disease is surprisingly diverse. Sci Rep. 2021 01 11; 11(1):302. Singhania A, Pham J, Dhanwani R, Frazier A, Rezende Dutra J, Marder KS, Phillips E, Mallal S, Amara AW, Standaert DG, Sulzer D, Peters B, Sette A, Lindestam Arlehamn CS. PMID: 33432042; PMCID: PMC7801678.
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    210. MTBVAC vaccination protects rhesus macaques against aerosol challenge with M. tuberculosis and induces immune signatures analogous to those observed in clinical studies. NPJ Vaccines. 2021 Jan 04; 6(1):4. White AD, Sibley L, Sarfas C, Morrison A, Gullick J, Clark S, Gleeson F, McIntyre A, Arlehamn CL, Sette A, Salguero FJ, Rayner E, Rodriguez E, Puentes E, Laddy D, Williams A, Dennis M, Martin C, Sharpe S. PMID: 33397991; PMCID: PMC7782851.
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    216. Human rhinovirus-specific CD8 T cell responses target conserved and unusual epitopes. FASEB J. 2021 01; 35(1):e21208. Gomez-Perosanz M, Sanchez-Trincado JL, Fernandez-Arquero M, Sidney J, Sette A, Lafuente EM, Reche PA. PMID: 33230881; PMCID: PMC7753581.
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    218. Identification of Novel Yellow Fever Class II Epitopes in YF-17D Vaccinees. Viruses. 2020 11 12; 12(11). Mateus J, Grifoni A, Voic H, Angelo MA, Phillips E, Mallal S, Sidney J, Sette A, Weiskopf D. PMID: 33198381; PMCID: PMC7697718.
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    219. Comparison of HLA ligand elution data and binding predictions reveals varying prediction performance for the multiple motifs recognized by HLA-DQ2.5. Immunology. 2021 02; 162(2):235-247. Kosaloglu-Yalçin Z, Sidney J, Chronister W, Peters B, Sette A. PMID: 33064841; PMCID: PMC7808151.
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    221. HLA tapasin independence: broader peptide repertoire and HIV control. Proc Natl Acad Sci U S A. 2020 11 10; 117(45):28232-28238. Bashirova AA, Viard M, Naranbhai V, Grifoni A, Garcia-Beltran W, Akdag M, Yuki Y, Gao X, O'hUigin C, Raghavan M, Wolinsky S, Bream JH, Duggal P, Martinson J, Michael NL, Kirk GD, Buchbinder SP, Haas D, Goedert JJ, Deeks SG, Fellay J, Walker B, Goulder P, Cresswell P, Elliott T, Sette A, Carlson J, Carrington M. PMID: 33097667; PMCID: PMC7668082.
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    222. Key Parameters of Tumor Epitope Immunogenicity Revealed Through a Consortium Approach Improve Neoantigen Prediction. Cell. 2020 10 29; 183(3):818-834.e13. Wells DK, van Buuren MM, Dang KK, Hubbard-Lucey VM, Sheehan KCF, Campbell KM, Lamb A, Ward JP, Sidney J, Blazquez AB, Rech AJ, Zaretsky JM, Comin-Anduix B, Ng AHC, Chour W, Yu TV, Rizvi H, Chen JM, Manning P, Steiner GM, Doan XC, Tumor Neoantigen Selection Alliance, Merghoub T, Guinney J, Kolom A, Selinsky C, Ribas A, Hellmann MD, Hacohen N, Sette A, Heath JR, Bhardwaj N, Ramsdell F, Schreiber RD, Schumacher TN, Kvistborg P, Defranoux NA. PMID: 33038342; PMCID: PMC7652061.
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    223. Cross-reactive memory T cells and herd immunity to SARS-CoV-2. Nat Rev Immunol. 2020 11; 20(11):709-713. Lipsitch M, Grad YH, Sette A, Crotty S. PMID: 33024281; PMCID: PMC7537578.
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    225. Inflammation in Experimental Models of α-Synucleinopathies. Mov Disord. 2021 01; 36(1):37-49. Harms AS, Kordower JH, Sette A, Lindestam Arlehamn CS, Sulzer D, Mach RH. PMID: 33009855; PMCID: PMC8115204.
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    231. HLA Class I Binding of Mutant EGFR Peptides in NSCLC Is Associated With Improved Survival. J Thorac Oncol. 2021 01; 16(1):104-112. Dimou A, Grewe P, Sidney J, Sette A, Norman PJ, Doebele RC. PMID: 32927123; PMCID: PMC7797166.
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    232. T Cell Responses to Neural Autoantigens Are Similar in Alzheimer's Disease Patients and Age-Matched Healthy Controls. Front Neurosci. 2020; 14:874. Dhanwani R, Pham J, Premlal ALR, Frazier A, Kumar A, Pero ME, Bartolini F, Dutra JR, Marder KS, Peters B, Sulzer D, Sette A, Lindestam Arlehamn CS. PMID: 32982670; PMCID: PMC7481378.
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    233. SARS-CoV-2 infection induces robust germinal center CD4 T follicular helper cell responses in rhesus macaques. Res Sq. 2020 Aug 14. Elizaldi S, Lakshmanappa YS, Roh J, Schmidt B, Carroll T, Weaver K, Smith J, Deere J, Dutra J, Stone M, Franz S, Sammak R, Olstad K, Reader JR, Ma ZM, Nguyen N, Watanabe J, Usachenko J, Immareddy R, Yee J, Weiskopf D, Sette A, Hartigan-O'Connor D, McSorley S, Morrison J, Tran N, Simmons G, Busch M, Kozlowsk P, van Rompay K, Miller C, Iyer S. PMID: 32818217; PMCID: PMC7430596.
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    234. Proteome-Wide Zika Virus CD4 T Cell Epitope and HLA Restriction Determination. Immunohorizons. 2020 08 04; 4(8):444-453. Campbell VL, Nguyen L, Snoey E, McClurkan CL, Laing KJ, Dong L, Sette A, Lindestam Arlehamn CS, Altmann DM, Boyton RJ, Roby JA, Gale M, Stone M, Busch MP, Norris PJ, Koelle DM. PMID: 32753403; PMCID: PMC7839664.
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    235. Selective and cross-reactive SARS-CoV-2 T cell epitopes in unexposed humans. Science. 2020 10 02; 370(6512):89-94. Mateus J, Grifoni A, Tarke A, Sidney J, Ramirez SI, Dan JM, Burger ZC, Rawlings SA, Smith DM, Phillips E, Mallal S, Lammers M, Rubiro P, Quiambao L, Sutherland A, Yu ED, da Silva Antunes R, Greenbaum J, Frazier A, Markmann AJ, Premkumar L, de Silva A, Peters B, Crotty S, Sette A, Weiskopf D. PMID: 32753554; PMCID: PMC7574914.
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    236. Pre-existing immunity to SARS-CoV-2: the knowns and unknowns. Nat Rev Immunol. 2020 08; 20(8):457-458. Sette A, Crotty S. PMID: 32636479; PMCID: PMC7339790.
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    237. A behind-the-scenes tour of the IEDB curation process: an optimized process empirically integrating automation and human curation efforts. Immunology. 2020 10; 161(2):139-147. Salimi N, Edwards L, Foos G, Greenbaum JA, Martini S, Reardon B, Shackelford D, Vita R, Zalman L, Peters B, Sette A. PMID: 32615639; PMCID: PMC7496777.
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    238. Pathogenic Autoimmunity in Atherosclerosis Evolves From Initially Protective Apolipoprotein B100-Reactive CD4+ T-Regulatory Cells. Circulation. 2020 09 29; 142(13):1279-1293. Wolf D, Gerhardt T, Winkels H, Michel NA, Pramod AB, Ghosheh Y, Brunel S, Buscher K, Miller J, McArdle S, Baas L, Kobiyama K, Vassallo M, Ehinger E, Dileepan T, Ali A, Schell M, Mikulski Z, Sidler D, Kimura T, Sheng X, Horstmann H, Hansen S, Mitre LS, Stachon P, Hilgendorf I, Gaddis DE, Hedrick C, Benedict CA, Peters B, Zirlik A, Sette A, Ley K. PMID: 32703007; PMCID: PMC7515473.
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    239. Correction: Quantitative and Qualitative Perturbations of CD8+ MAITs in Healthy Mycobacterium tuberculosis-Infected Individuals. Immunohorizons. 2020 Jul 22; 4(7):442-443. Pomaznoy M, Kuan R, Lindvall M, Burel JG, Seumois G, Vijayanand P, Taplitz R, Gilman RH, Saito M, Lewinsohn DM, Sette A, Peters B, Lindestam Arlehamn CS. PMID: 32699177; PMCID: PMC10202146.
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    240. Mycobacterium tuberculosis-specific CD4 T cells expressing CD153 inversely associate with bacterial load and disease severity in human tuberculosis. Mucosal Immunol. 2021 03; 14(2):491-499. Du Bruyn E, Ruzive S, Lindestam Arlehamn CS, Sette A, Sher A, Barber DL, Wilkinson RJ, Riou C. PMID: 32678272; PMCID: PMC7855386.
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    241. SARS-CoV-2 infection induces germinal center responses with robust stimulation of CD4 T follicular helper cells in rhesus macaques. bioRxiv. 2020 Jul 08. Elizaldi SR, Lakshmanappa YS, Roh JW, Schmidt BA, Carroll TD, Weaver KD, Smith JC, Deere JD, Dutra J, Stone M, Sammak RL, Olstad KJ, Reader JR, Ma ZM, Nguyen NK, Watanabe J, Usachaenko J, Immareddy R, Yee JL, Weiskopf D, Sette A, Hartigan-O'Connor D, McSorley SJ, Morrison JH, Tran NK, Simmons G, Busch MP, Kozlowski PA, Van Rompay KKA, Miller CJ, Iyer SS. PMID: 32676606; PMCID: PMC7359530.
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    242. Single-Cell Transcriptomic Analysis of SARS-CoV-2 Reactive CD4 + T Cells. SSRN. 2020 Jul 07; 3641939. Meckiff BJ, Ramírez-Suástegui C, Fajardo V, Chee SJ, Kusnadi A, Simon H, Grifoni A, Pelosi E, Weiskopf D, Sette A, Ay F, Seumois G, Ottensmeier CH, Vijayanand P. PMID: 32742242; PMCID: PMC7385998.
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    243. Phenotype and kinetics of SARS-CoV-2-specific T cells in COVID-19 patients with acute respiratory distress syndrome. Sci Immunol. 2020 06 26; 5(48). Weiskopf D, Schmitz KS, Raadsen MP, Grifoni A, Okba NMA, Endeman H, van den Akker JPC, Molenkamp R, Koopmans MPG, van Gorp ECM, Haagmans BL, de Swart RL, Sette A, de Vries RD. PMID: 32591408; PMCID: PMC7319493.
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    244. Impact of Cysteine Residues on MHC Binding Predictions and Recognition by Tumor-Reactive T Cells. J Immunol. 2020 07 15; 205(2):539-549. Sachs A, Moore E, Kosaloglu-Yalcin Z, Peters B, Sidney J, Rosenberg SA, Robbins PF, Sette A. PMID: 32571843; PMCID: PMC7413297.
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    245. Persistence of Varicella-Zoster Virus-Specific Plasma Cells in Adult Human Bone Marrow following Childhood Vaccination. J Virol. 2020 06 16; 94(13). Eberhardt CS, Wieland A, Nasti TH, Grifoni A, Wilson E, Schmid DS, Pulendran B, Sette A, Waller EK, Rouphael N, Ahmed R. PMID: 32321817; PMCID: PMC7307153.
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    246. Transient Immune Activation in BCG-Vaccinated Infant Rhesus Macaques Is Not Sufficient to Influence Oral Simian Immunodeficiency Virus Infection. J Infect Dis. 2020 06 16; 222(1):44-53. Wood MP, Wood LF, Templeton M, Fisher B, Lippy A, Jones CI, Lindestam Arlehamn CS, Sette A, Fuller JT, Murapa P, Jaspan HB, Fuller DH, Sodora DL. PMID: 31605528; PMCID: PMC7457186.
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    247. Single-cell transcriptomic analysis of SARS-CoV-2 reactive CD4 + T cells. bioRxiv. 2020 Jun 13. Meckiff BJ, Ramírez-Suástegui C, Fajardo V, Chee SJ, Kusnadi A, Simon H, Grifoni A, Pelosi E, Weiskopf D, Sette A, Ay F, Seumois G, Ottensmeier CH, Vijayanand P. PMID: 32587963; PMCID: PMC7310619.
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    248. Single-cell transcriptomic analysis of allergen-specific T cells in allergy and asthma. Sci Immunol. 2020 06 12; 5(48). Seumois G, Ramírez-Suástegui C, Schmiedel BJ, Liang S, Peters B, Sette A, Vijayanand P. PMID: 32532832; PMCID: PMC7372639.
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    249. The receptor binding domain of the viral spike protein is an immunodominant and highly specific target of antibodies in SARS-CoV-2 patients. Sci Immunol. 2020 06 11; 5(48). Premkumar L, Segovia-Chumbez B, Jadi R, Martinez DR, Raut R, Markmann A, Cornaby C, Bartelt L, Weiss S, Park Y, Edwards CE, Weimer E, Scherer EM, Rouphael N, Edupuganti S, Weiskopf D, Tse LV, Hou YJ, Margolis D, Sette A, Collins MH, Schmitz J, Baric RS, de Silva AM. PMID: 32527802; PMCID: PMC7292505.
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    250. Quantitative and Qualitative Perturbations of CD8+ MAITs in Healthy Mycobacterium tuberculosis-Infected Individuals. Immunohorizons. 2020 06 04; 4(6):292-307. Pomaznoy M, Kuan R, Lindvall M, Burel JG, Seumois G, Vijayanand P, Taplitz R, Gilman RH, Saito M, Lewinsohn DM, Sette A, Peters B, Lindestam Arlehamn CS. PMID: 32499216; PMCID: PMC7543048.
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    251. Benchmarking predictions of MHC class I restricted T cell epitopes in a comprehensively studied model system. PLoS Comput Biol. 2020 05; 16(5):e1007757. Paul S, Croft NP, Purcell AW, Tscharke DC, Sette A, Nielsen M, Peters B. PMID: 32453790; PMCID: PMC7274474.
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    252. Targets of T Cell Responses to SARS-CoV-2 Coronavirus in Humans with COVID-19 Disease and Unexposed Individuals. Cell. 2020 06 25; 181(7):1489-1501.e15. Grifoni A, Weiskopf D, Ramirez SI, Mateus J, Dan JM, Moderbacher CR, Rawlings SA, Sutherland A, Premkumar L, Jadi RS, Marrama D, de Silva AM, Frazier A, Carlin AF, Greenbaum JA, Peters B, Krammer F, Smith DM, Crotty S, Sette A. PMID: 32473127; PMCID: PMC7237901.
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    253. The Challenge of Distinguishing Cell-Cell Complexes from Singlet Cells in Non-Imaging Flow Cytometry and Single-Cell Sorting. Cytometry A. 2020 11; 97(11):1127-1135. Burel JG, Pomaznoy M, Lindestam Arlehamn CS, Seumois G, Vijayanand P, Sette A, Peters B. PMID: 32400942; PMCID: PMC7666012.
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    254. The RBD Of The Spike Protein Of SARS-Group Coronaviruses Is A Highly Specific Target Of SARS-CoV-2 Antibodies But Not Other Pathogenic Human and Animal Coronavirus Antibodies. medRxiv. 2020 May 10. Premkumar L, Segovia-Chumbez B, Jadi R, Martinez DR, Raut R, Markmann A, Cornaby C, Bartelt L, Weiss S, Park Y, Edwards CE, Weimer E, Scherer EM, Roupael N, Edupuganti S, Weiskopf D, Tse LV, Hou YJ, Margolis D, Sette A, Collins MH, Schmitz J, Baric RS, de Silva AM. PMID: 32511572; PMCID: PMC7274253.
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    255. T Cell Responses Induced by Attenuated Flavivirus Vaccination Are Specific and Show Limited Cross-Reactivity with Other Flavivirus Species. J Virol. 2020 05 04; 94(10). Grifoni A, Voic H, Dhanda SK, Kidd CK, Brien JD, Buus S, Stryhn A, Durbin AP, Whitehead S, Diehl SA, De Silva AD, Balmaseda A, Harris E, Weiskopf D, Sette A. PMID: 32132233; PMCID: PMC7199411.
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    256. α-Synuclein-specific T cell reactivity is associated with preclinical and early Parkinson's disease. Nat Commun. 2020 04 20; 11(1):1875. Lindestam Arlehamn CS, Dhanwani R, Pham J, Kuan R, Frazier A, Rezende Dutra J, Phillips E, Mallal S, Roederer M, Marder KS, Amara AW, Standaert DG, Goldman JG, Litvan I, Peters B, Sulzer D, Sette A. PMID: 32313102; PMCID: PMC7171193.
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    257. Development and Validation of a Bordetella pertussis Whole-Genome Screening Strategy. J Immunol Res. 2020; 2020:8202067. da Silva Antunes R, Quiambao LG, Sutherland A, Soldevila F, Dhanda SK, Armstrong SK, Brickman TJ, Merkel T, Peters B, Sette A. PMID: 32322598; PMCID: PMC7154976.
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    258. Inhibition of protective immunity against Staphylococcus aureus infection by MHC-restricted immunodominance is overcome by vaccination. Sci Adv. 2020 04; 6(14):eaaw7713. Si Y, Zhao F, Beesetty P, Weiskopf D, Li Z, Tian Q, Alegre ML, Sette A, Chong AS, Montgomery CP. PMID: 32270029; PMCID: PMC7112766.
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    259. Characterization of Proinsulin T Cell Epitopes Restricted by Type 1 Diabetes-Associated HLA Class II Molecules. J Immunol. 2020 05 01; 204(9):2349-2359. Ihantola EL, Ilmonen H, Kailaanmäki A, Rytkönen-Nissinen M, Azam A, Maillère B, Lindestam Arlehamn CS, Sette A, Motwani K, Seay HR, Brusko TM, Knip M, Veijola R, Toppari J, Ilonen J, Kinnunen T. PMID: 32229538; PMCID: PMC9022012.
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    260. Safety and immunogenicity of the tetravalent, live-attenuated dengue vaccine Butantan-DV in adults in Brazil: a two-step, double-blind, randomised placebo-controlled phase 2 trial. Lancet Infect Dis. 2020 07; 20(7):839-850. Kallas EG, Precioso AR, Palacios R, Thomé B, Braga PE, Vanni T, Campos LMA, Ferrari L, Mondini G, da Graça Salomão M, da Silva A, Espinola HM, do Prado Santos J, Santos CLS, Timenetsky MDCST, Miraglia JL, Gallina NMF, Weiskopf D, Sette A, Goulart R, Salles RT, Maestri A, Sallum AME, Farhat SCL, Sakita NK, Ferreira JCOA, Silveira CGT, Costa PR, Raw I, Whitehead SS, Durbin AP, Kalil J. PMID: 32220283.
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    261. Rapid Induction and Maintenance of Virus-Specific CD8+ TEMRA and CD4+ TEM Cells Following Protective Vaccination Against Dengue Virus Challenge in Humans. Front Immunol. 2020; 11:479. Graham N, Eisenhauer P, Diehl SA, Pierce KK, Whitehead SS, Durbin AP, Kirkpatrick BD, Sette A, Weiskopf D, Boyson JE, Botten JW. PMID: 32265929; PMCID: PMC7105617.
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    262. A Sequence Homology and Bioinformatic Approach Can Predict Candidate Targets for Immune Responses to SARS-CoV-2. Cell Host Microbe. 2020 04 08; 27(4):671-680.e2. Grifoni A, Sidney J, Zhang Y, Scheuermann RH, Peters B, Sette A. PMID: 32183941; PMCID: PMC7142693.
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    263. Howard Grey 1932-2019. Nat Immunol. 2020 03; 21(3):242. Sette A. PMID: 32015542; PMCID: PMC7223305.
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    264. Candidate Targets for Immune Responses to 2019-Novel Coronavirus (nCoV): Sequence Homology- and Bioinformatic-Based Predictions. SSRN. 2020 Feb 25; 3541361. Grifoni A, Sidney J, Zhang Y, Scheuermann RH, Peters B, Sette A. PMID: 32714104; PMCID: PMC7366807.
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    265. T Cell Epitope Predictions. Annu Rev Immunol. 2020 04 26; 38:123-145. Peters B, Nielsen M, Sette A. PMID: 32045313.
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    266. Major Histocompatibility Complex Binding, Eluted Ligands, and Immunogenicity: Benchmark Testing and Predictions. Front Immunol. 2019; 10:3151. Paul S, Grifoni A, Peters B, Sette A. PMID: 32117208; PMCID: PMC7012937.
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    267. Detection of EXP1-Specific CD4+ T Cell Responses Directed Against a Broad Range of Epitopes Including Two Promiscuous MHC Class II Binders During Acute Plasmodium falciparum Malaria. Front Immunol. 2019; 10:3037. Heide J, Wildner NH, Ackermann C, Wittner M, Marget M, Sette A, Sidney J, Jacobs T, Schulze Zur Wiesch J. PMID: 32038611; PMCID: PMC6993587.
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    268. Transcriptomic immune profiles of human flavivirus-specific T-cell responses. Immunology. 2020 05; 160(1):3-9. Grifoni A, Tian Y, Sette A, Weiskopf D. PMID: 31778581; PMCID: PMC7160650.
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    269. Epitope-specific airway-resident CD4+ T cell dynamics during experimental human RSV infection. J Clin Invest. 2020 01 02; 130(1):523-538. Guvenel A, Jozwik A, Ascough S, Ung SK, Paterson S, Kalyan M, Gardener Z, Bergstrom E, Kar S, Habibi MS, Paras A, Zhu J, Park M, Dhariwal J, Almond M, Wong EH, Sykes A, Del Rosario J, Trujillo-Torralbo MB, Mallia P, Sidney J, Peters B, Kon OM, Sette A, Johnston SL, Openshaw PJ, Chiu C. PMID: 31815739; PMCID: PMC6934186.
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    270. A structured model for immune exposures. Database (Oxford). 2020 01 01; 2020. Vita R, Overton JA, Dunn P, Cheung KH, Kleinstein SH, Sette A, Peters B. PMID: 32283555; PMCID: PMC7153954.
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    271. Molecular Signatures of Dengue Virus-Specific IL-10/IFN-γ Co-producing CD4 T Cells and Their Association with Dengue Disease. Cell Rep. 2019 12 24; 29(13):4482-4495.e4. Tian Y, Seumois G, De-Oliveira-Pinto LM, Mateus J, Herrera-de la Mata S, Kim C, Hinz D, Goonawardhana NDS, de Silva AD, Premawansa S, Premawansa G, Wijewickrama A, Balmaseda A, Grifoni A, Vijayanand P, Harris E, Peters B, Sette A, Weiskopf D. PMID: 31875555; PMCID: PMC6942518.
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    272. Evolution of the innate and adaptive immune response in women with acute Zika virus infection. Nat Microbiol. 2020 01; 5(1):76-83. Tonnerre P, Melgaço JG, Torres-Cornejo A, Pinto MA, Yue C, Blümel J, de Sousa PSF, de Mello VDM, Moran J, de Filippis AMB, Wolski D, Grifoni A, Sette A, Barouch DH, Hoogeveen RC, Baylis SA, Lauer GM, Lewis-Ximenez LL. PMID: 31792427; PMCID: PMC6938397.
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    273. The Immune Epitope Database and Analysis Resource Program 2003-2018: reflections and outlook. Immunogenetics. 2020 02; 72(1-2):57-76. Martini S, Nielsen M, Peters B, Sette A. PMID: 31761977; PMCID: PMC6970984.
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    274. The Human Immunopeptidome Project: A Roadmap to Predict and Treat Immune Diseases. Mol Cell Proteomics. 2020 01; 19(1):31-49. Vizcaíno JA, Kubiniok P, Kovalchik KA, Ma Q, Duquette JD, Mongrain I, Deutsch EW, Peters B, Sette A, Sirois I, Caron E. PMID: 31744855; PMCID: PMC6944237.
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    275. An in silico-in vitro Pipeline Identifying an HLA-A*02:01+ KRAS G12V+ Spliced Epitope Candidate for a Broad Tumor-Immune Response in Cancer Patients. Front Immunol. 2019; 10:2572. Mishto M, Mansurkhodzhaev A, Ying G, Bitra A, Cordfunke RA, Henze S, Paul D, Sidney J, Urlaub H, Neefjes J, Sette A, Zajonc DM, Liepe J. PMID: 31803176; PMCID: PMC6872521.
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    276. Limited recognition of Mycobacterium tuberculosis-infected macrophages by polyclonal CD4 and CD8 T cells from the lungs of infected mice. Mucosal Immunol. 2020 01; 13(1):140-148. Patankar YR, Sutiwisesak R, Boyce S, Lai R, Lindestam Arlehamn CS, Sette A, Behar SM. PMID: 31636345; PMCID: PMC7161428.
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    277. Benchmark datasets of immune receptor-epitope structural complexes. BMC Bioinformatics. 2019 Oct 10; 20(1):490. Mahajan S, Yan Z, Jespersen MC, Jensen KK, Marcatili P, Nielsen M, Sette A, Peters B. PMID: 31601176; PMCID: PMC6785892.
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    278. Anti-HIV potency of T-cell responses elicited by dendritic cell therapeutic vaccination. PLoS Pathog. 2019 09; 15(9):e1008011. Surenaud M, Montes M, Lindestam Arlehamn CS, Sette A, Banchereau J, Palucka K, Lelièvre JD, Lacabaratz C, Lévy Y. PMID: 31498845; PMCID: PMC6733439.
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    279. Human T Cell Response to Dengue Virus Infection. Front Immunol. 2019; 10:2125. Tian Y, Grifoni A, Sette A, Weiskopf D. PMID: 31552052; PMCID: PMC6737489.
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    280. Nontuberculous Mycobacteria and Heterologous Immunity to Tuberculosis. J Infect Dis. 2019 08 30; 220(7):1091-1098. Shah JA, Lindestam Arlehamn CS, Horne DJ, Sette A, Hawn TR. PMID: 31165861; PMCID: PMC6736075.
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    281. A survey of known immune epitopes in the enteroviruses strains associated with acute flaccid myelitis. Hum Immunol. 2019 Nov; 80(11):923-929. Grifoni A, Mahajan S, Sidney J, Martini S, Scheuermann RH, Peters B, Sette A. PMID: 31451291; PMCID: PMC6876747.
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    282. Roles for the adaptive immune system in Parkinson's and Alzheimer's diseases. Curr Opin Immunol. 2019 08; 59:115-120. Lindestam Arlehamn CS, Garretti F, Sulzer D, Sette A. PMID: 31430650; PMCID: PMC6774843.
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    283. Recognition of Class II MHC Peptide Ligands That Contain β-Amino Acids. J Immunol. 2019 09 15; 203(6):1619-1628. Cheloha RW, Woodham AW, Bousbaine D, Wang T, Liu S, Sidney J, Sette A, Gellman SH, Ploegh HL. PMID: 31391235; PMCID: PMC6736755.
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    284. A Modified Injector and Sample Acquisition Protocol Can Improve Data Quality and Reduce Inter-Instrument Variability of the Helios Mass Cytometer. Cytometry A. 2019 09; 95(9):1019-1030. Lee BH, Kelly G, Bradford S, Davila M, Guo XV, Amir ED, Thrash EM, Solga MD, Lannigan J, Sellers B, Candia J, Tsang J, Montgomery RR, Tamaki SJ, Sigdel TK, Sarwal MM, Lanier LL, Tian Y, Kim C, Hinz D, Peters B, Sette A, Rahman AH. PMID: 31364278; PMCID: PMC6750971.
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    285. Characterization of Magnitude and Antigen Specificity of HLA-DP, DQ, and DRB3/4/5 Restricted DENV-Specific CD4+ T Cell Responses. Front Immunol. 2019; 10:1568. Grifoni A, Moore E, Voic H, Sidney J, Phillips E, Jadi R, Mallal S, De Silva AD, De Silva AM, Peters B, Weiskopf D, Sette A. PMID: 31333679; PMCID: PMC6624677.
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    286. IEDB-AR: immune epitope database-analysis resource in 2019. Nucleic Acids Res. 2019 07 02; 47(W1):W502-W506. Dhanda SK, Mahajan S, Paul S, Yan Z, Kim H, Jespersen MC, Jurtz V, Andreatta M, Greenbaum JA, Marcatili P, Sette A, Nielsen M, Peters B. PMID: 31114900; PMCID: PMC6602498.
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    287. Quantification of epitope abundance reveals the effect of direct and cross-presentation on influenza CTL responses. Nat Commun. 2019 06 28; 10(1):2846. Wu T, Guan J, Handel A, Tscharke DC, Sidney J, Sette A, Wakim LM, Sng XYX, Thomas PG, Croft NP, Purcell AW, La Gruta NL. PMID: 31253788; PMCID: PMC6599079.
      View in: PubMed   Mentions: 45     Fields:    Translation:HumansAnimalsCells
    288. Circulating T cell-monocyte complexes are markers of immune perturbations. Elife. 2019 06 25; 8. Burel JG, Pomaznoy M, Lindestam Arlehamn CS, Weiskopf D, da Silva Antunes R, Jung Y, Babor M, Schulten V, Seumois G, Greenbaum JA, Premawansa S, Premawansa G, Wijewickrama A, Vidanagama D, Gunasena B, Tippalagama R, deSilva AD, Gilman RH, Saito M, Taplitz R, Ley K, Vijayanand P, Sette A, Peters B. PMID: 31237234; PMCID: PMC6592685.
      View in: PubMed   Mentions: 34     Fields:    Translation:HumansCells
    289. The association of allergic sensitization patterns in early childhood with disease manifestations and immunological reactivity at 10 years of age. Clin Exp Allergy. 2019 08; 49(8):1087-1094. Schulten V, Frazier A, Calatroni A, Kattan M, Bacharier LB, O'Connor GT, Sandel MT, Wood RA, Wheatley LM, Togias A, Visness CM, Dresen A, Gern JE, Sette A. PMID: 31046157; PMCID: PMC6896992.
      View in: PubMed   Mentions: 3     Fields:    Translation:HumansAnimalsCTClinical Trials
    290. Longitudinal Analysis of the Human B Cell Response to Ebola Virus Infection. Cell. 2019 05 30; 177(6):1566-1582.e17. Davis CW, Jackson KJL, McElroy AK, Halfmann P, Huang J, Chennareddy C, Piper AE, Leung Y, Albariño CG, Crozier I, Ellebedy AH, Sidney J, Sette A, Yu T, Nielsen SCA, Goff AJ, Spiropoulou CF, Saphire EO, Cavet G, Kawaoka Y, Mehta AK, Glass PJ, Boyd SD, Ahmed R. PMID: 31104840; PMCID: PMC6908968.
      View in: PubMed   Mentions: 87     Fields:    Translation:HumansAnimalsCells
    291. Widespread Tau-Specific CD4 T Cell Reactivity in the General Population. J Immunol. 2019 07 01; 203(1):84-92. Lindestam Arlehamn CS, Pham J, Alcalay RN, Frazier A, Shorr E, Carpenter C, Sidney J, Dhanwani R, Agin-Liebes J, Garretti F, Amara AW, Standaert DG, Phillips EJ, Mallal SA, Peters B, Sulzer D, Sette A. PMID: 31085590; PMCID: PMC6581570.
      View in: PubMed   Mentions: 14     Fields:    Translation:HumansCells
    292. Naturally processed HLA-DR3-restricted HHV-6B peptides are recognized broadly with polyfunctional and cytotoxic CD4 T-cell responses. Eur J Immunol. 2019 08; 49(8):1167-1185. Becerra-Artiles A, Cruz J, Leszyk JD, Sidney J, Sette A, Shaffer SA, Stern LJ. PMID: 31020640.
      View in: PubMed   Mentions: 13     Fields:    Translation:HumansCells
    293. Characterization and epitope identification of the T cell response in non-allergic individuals exposed to mouse allergen. World Allergy Organ J. 2019; 12(4):100026. Grifoni A, da Silva Antunes R, Westernberg L, Pham J, Birrueta G, Peters B, Sette A, Schulten V. PMID: 31044023; PMCID: PMC6479169.
      View in: PubMed   Mentions: 5  
    294. Comprehensive Review of Human Plasmodium falciparum-Specific CD8+ T Cell Epitopes. Front Immunol. 2019; 10:397. Heide J, Vaughan KC, Sette A, Jacobs T, Schulze Zur Wiesch J. PMID: 30949162; PMCID: PMC6438266.
      View in: PubMed   Mentions: 14     Fields:    Translation:HumansAnimalsCells
    295. Dengue-specific CD8+ T cell subsets display specialized transcriptomic and TCR profiles. J Clin Invest. 2019 03 18; 129(4):1727-1741. Tian Y, Babor M, Lane J, Seumois G, Liang S, Goonawardhana NDS, De Silva AD, Phillips EJ, Mallal SA, da Silva Antunes R, Grifoni A, Vijayanand P, Weiskopf D, Peters B, Sette A. PMID: 30882366; PMCID: PMC6436856.
      View in: PubMed   Mentions: 21     Fields:    Translation:HumansCells
    296. New epitopes in ovalbumin provide insights for cancer neoepitopes. JCI Insight. 2019 03 14; 5. Karandikar SH, Sidney J, Sette A, Selby MJ, Korman AJ, Srivastava PK. PMID: 30869653; PMCID: PMC6538383.
      View in: PubMed   Mentions: 8     Fields:    Translation:HumansAnimalsCells
    297. Variability in German Cockroach Extract Composition Greatly Impacts T Cell Potency in Cockroach-Allergic Donors. Front Immunol. 2019; 10:313. Birrueta G, Frazier A, Pomés A, Glesner J, Filep S, Schal C, Jeong KY, McMurtrey C, Vander Schans T, Hildebrand WH, Busse P, Beigelman A, Bacharier LB, Peters B, Sette A, Schulten V. PMID: 30891032; PMCID: PMC6413722.
      View in: PubMed   Mentions: 12     Fields:    Translation:HumansAnimalsCells
    298. Autoimmunity in Parkinson's Disease: The Role of α-Synuclein-Specific T Cells. Front Immunol. 2019; 10:303. Garretti F, Agalliu D, Lindestam Arlehamn CS, Sette A, Sulzer D. PMID: 30858851; PMCID: PMC6397885.
      View in: PubMed   Mentions: 68     Fields:    Translation:HumansAnimalsCells
    299. Host Transcriptomics as a Tool to Identify Diagnostic and Mechanistic Immune Signatures of Tuberculosis. Front Immunol. 2019; 10:221. Burel JG, Babor M, Pomaznoy M, Lindestam Arlehamn CS, Khan N, Sette A, Peters B. PMID: 30837989; PMCID: PMC6389658.
      View in: PubMed   Mentions: 14     Fields:    Translation:HumansAnimalsCells
    300. Counter-regulation of regulatory T cells by autoreactive CD8+ T cells in rheumatoid arthritis. J Autoimmun. 2019 05; 99:81-97. Cammarata I, Martire C, Citro A, Raimondo D, Fruci D, Melaiu O, D'Oria V, Carone C, Peruzzi G, Cerboni C, Santoni A, Sidney J, Sette A, Paroli M, Caccavale R, Milanetti E, Riminucci M, Timperi E, Piconese S, Manzo A, Montecucco C, Scrivo R, Valesini G, Cariani E, Barnaba V. PMID: 30777378.
      View in: PubMed   Mentions: 10     Fields:    Translation:HumansCells
    301. Recurrent group A Streptococcus tonsillitis is an immunosusceptibility disease involving antibody deficiency and aberrant TFH cells. Sci Transl Med. 2019 02 06; 11(478). Dan JM, Havenar-Daughton C, Kendric K, Al-Kolla R, Kaushik K, Rosales SL, Anderson EL, LaRock CN, Vijayanand P, Seumois G, Layfield D, Cutress RI, Ottensmeier CH, Lindestam Arlehamn CS, Sette A, Nizet V, Bothwell M, Brigger M, Crotty S. PMID: 30728285; PMCID: PMC6561727.
      View in: PubMed   Mentions: 55     Fields:    Translation:HumansCells
    302. Most viral peptides displayed by class I MHC on infected cells are immunogenic. Proc Natl Acad Sci U S A. 2019 02 19; 116(8):3112-3117. Croft NP, Smith SA, Pickering J, Sidney J, Peters B, Faridi P, Witney MJ, Sebastian P, Flesch IEA, Heading SL, Sette A, La Gruta NL, Purcell AW, Tscharke DC. PMID: 30718433; PMCID: PMC6386720.
      View in: PubMed   Mentions: 57     Fields:    Translation:HumansAnimalsCells
    303. Poor Antigen Processing of Poxvirus Particles Limits CD4+ T Cell Recognition and Impacts Immunogenicity of the Inactivated Vaccine. J Immunol. 2019 03 01; 202(5):1340-1349. Forsyth KS, DeHaven B, Mendonca M, Paul S, Sette A, Eisenlohr LC. PMID: 30700590; PMCID: PMC6394857.
      View in: PubMed   Mentions: 8     Fields:    Translation:AnimalsCells
    304. Detection of a Broad Range of Low-Level Major Histocompatibility Complex Class II-Restricted, Hepatitis Delta Virus (HDV)-Specific T-Cell Responses Regardless of Clinical Status. J Infect Dis. 2019 01 29; 219(4):568-577. Landahl J, Bockmann JH, Scheurich C, Ackermann C, Matzat V, Heide J, Nuurei T, D'Antonio G, von Felden J, Sette A, Peine S, Lohse AW, Luetgehetmann M, Marget M, Sidney J, Schulze Zur Wiesch J. PMID: 30247653.
      View in: PubMed   Mentions: 13     Fields:    Translation:HumansCells
    305. Hepatitis D Virus-Specific CD8+ T Cells Have a Memory-Like Phenotype Associated With Viral Immune Escape in Patients With Chronic Hepatitis D Virus Infection. Gastroenterology. 2019 05; 156(6):1805-1819.e9. Kefalakes H, Koh C, Sidney J, Amanakis G, Sette A, Heller T, Rehermann B. PMID: 30664876; PMCID: PMC7367679.
      View in: PubMed   Mentions: 23     Fields:    Translation:HumansCells
    306. The Immune Epitope Database (IEDB): 2018 update. Nucleic Acids Res. 2019 01 08; 47(D1):D339-D343. Vita R, Mahajan S, Overton JA, Dhanda SK, Martini S, Cantrell JR, Wheeler DK, Sette A, Peters B. PMID: 30357391; PMCID: PMC6324067.
      View in: PubMed   Mentions: 635     Fields:    Translation:Humans
    307. ZikaPLAN: addressing the knowledge gaps and working towards a research preparedness network in the Americas. Glob Health Action. 2019; 12(1):1666566. Wilder-Smith A, Preet R, Brickley EB, Ximenes RAA, Miranda-Filho DB, Turchi Martelli CM, Araújo TVB, Montarroyos UR, Moreira ME, Turchi MD, Solomon T, Jacobs BC, Villamizar CP, Osorio L, de Filipps AMB, Neyts J, Kaptein S, Huits R, Ariën KK, Willison HJ, Edgar JM, Barnett SC, Peeling R, Boeras D, Guzman MG, de Silva AM, Falconar AK, Romero-Vivas C, Gaunt MW, Sette A, Weiskopf D, Lambrechts L, Dolk H, Morris JK, Orioli IM, O'Reilly KM, Yakob L, Rocklöv J, Soares C, Ferreira MLB, Franca RFO, Precioso AR, Logan J, Lang T, Jamieson N, Massad E. PMID: 31640505; PMCID: PMC6818126.
      View in: PubMed   Mentions: 10     Fields:    Translation:HumansCellsPHPublic Health
    308. Human IFN-γ immunity to mycobacteria is governed by both IL-12 and IL-23. Sci Immunol. 2018 12 21; 3(30). Martínez-Barricarte R, Markle JG, Ma CS, Deenick EK, Ramírez-Alejo N, Mele F, Latorre D, Mahdaviani SA, Aytekin C, Mansouri D, Bryant VL, Jabot-Hanin F, Deswarte C, Nieto-Patlán A, Surace L, Kerner G, Itan Y, Jovic S, Avery DT, Wong N, Rao G, Patin E, Okada S, Bigio B, Boisson B, Rapaport F, Seeleuthner Y, Schmidt M, Ikinciogullari A, Dogu F, Tanir G, Tabarsi P, Bloursaz MR, Joseph JK, Heer A, Kong XF, Migaud M, Lazarov T, Geissmann F, Fleckenstein B, Arlehamn CL, Sette A, Puel A, Emile JF, van de Vosse E, Quintana-Murci L, Di Santo JP, Abel L, Boisson-Dupuis S, Bustamante J, Tangye SG, Sallusto F, Casanova JL. PMID: 30578351; PMCID: PMC6380365.
      View in: PubMed   Mentions: 86     Fields:    Translation:HumansCells
    309. A Review on T Cell Epitopes Identified Using Prediction and Cell-Mediated Immune Models for Mycobacterium tuberculosis and Bordetella pertussis. Front Immunol. 2018; 9:2778. Tian Y, da Silva Antunes R, Sidney J, Lindestam Arlehamn CS, Grifoni A, Dhanda SK, Paul S, Peters B, Weiskopf D, Sette A. PMID: 30555469; PMCID: PMC6281829.
      View in: PubMed   Mentions: 21     Fields:    Translation:HumansAnimalsCells
    310. Limited Pulmonary Mucosal-Associated Invariant T Cell Accumulation and Activation during Mycobacterium tuberculosis Infection in Rhesus Macaques. Infect Immun. 2018 12; 86(12). Kauffman KD, Sallin MA, Hoft SG, Sakai S, Moore R, Wilder-Kofie T, Moore IN, Sette A, Arlehamn CSL, Barber DL. PMID: 30201702; PMCID: PMC6246904.
      View in: PubMed   Mentions: 20     Fields:    Translation:AnimalsCells
    311. Epitope Specific Antibodies and T Cell Receptors in the Immune Epitope Database. Front Immunol. 2018; 9:2688. Mahajan S, Vita R, Shackelford D, Lane J, Schulten V, Zarebski L, Jespersen MC, Marcatili P, Nielsen M, Sette A, Peters B. PMID: 30515166; PMCID: PMC6255941.
      View in: PubMed   Mentions: 22     Fields:    Translation:HumansAnimals
    312. Footprints of antigen processing boost MHC class II natural ligand predictions. Genome Med. 2018 11 16; 10(1):84. Barra C, Alvarez B, Paul S, Sette A, Peters B, Andreatta M, Buus S, Nielsen M. PMID: 30446001; PMCID: PMC6240193.
      View in: PubMed   Mentions: 36     Fields:    Translation:HumansAnimalsCells
    313. Investigation of Outbreak-Specific Nonsynonymous Mutations on Ebolavirus GP in the Context of Known Immune Reactivity. J Immunol Res. 2018; 2018:1846207. Vaughan K, Xu X, Peters B, Sette A. PMID: 30581874; PMCID: PMC6276448.
      View in: PubMed   Mentions:    Fields:    Translation:HumansCellsPHPublic Health
    314. ImmunomeBrowser: a tool to aggregate and visualize complex and heterogeneous epitopes in reference proteins. Bioinformatics. 2018 11 15; 34(22):3931-3933. Dhanda SK, Vita R, Ha B, Grifoni A, Peters B, Sette A. PMID: 29878047; PMCID: PMC6223373.
      View in: PubMed   Mentions: 23     Fields:    Translation:Cells
    315. Mapping the MHC Class I-Spliced Immunopeptidome of Cancer Cells. Cancer Immunol Res. 2019 01; 7(1):62-76. Liepe J, Sidney J, Lorenz FKM, Sette A, Mishto M. PMID: 30425108.
      View in: PubMed   Mentions: 37     Fields:    Translation:HumansCells
    316. Cutting Edge: Transcriptional Profiling Reveals Multifunctional and Cytotoxic Antiviral Responses of Zika Virus-Specific CD8+ T Cells. J Immunol. 2018 12 15; 201(12):3487-3491. Grifoni A, Costa-Ramos P, Pham J, Tian Y, Rosales SL, Seumois G, Sidney J, de Silva AD, Premkumar L, Collins MH, Stone M, Norris PJ, Romero CME, Durbin A, Ricciardi MJ, Ledgerwood JE, de Silva AM, Busch M, Peters B, Vijayanand P, Harris E, Falconar AK, Kallas E, Weiskopf D, Sette A. PMID: 30413672; PMCID: PMC6287102.
      View in: PubMed   Mentions: 33     Fields:    Translation:HumansCells
    317. Peanut-specific T cell responses in patients with different clinical reactivity. PLoS One. 2018; 13(10):e0204620. Birrueta G, Tripple V, Pham J, Manohar M, James EA, Kwok WW, Nadeau KC, Sette A, Peters B, Schulten V. PMID: 30304054; PMCID: PMC6179248.
      View in: PubMed   Mentions: 10     Fields:    Translation:HumansAnimalsCells
    318. Sequence-based HLA-A, B, C, DP, DQ, and DR typing of 496 adults from San Diego, California, USA. Hum Immunol. 2018 Dec; 79(12):821-822. Moore E, Grifoni A, Weiskopf D, Schulten V, Arlehamn CSL, Angelo M, Pham J, Leary S, Sidney J, Broide D, Frazier A, Phillips E, Mallal S, Mack SJ, Sette A. PMID: 30278218; PMCID: PMC6537871.
      View in: PubMed   Mentions: 7     Fields:    Translation:HumansCells
    319. Regulatory CD4+ T Cells Recognize Major Histocompatibility Complex Class II Molecule-Restricted Peptide Epitopes of Apolipoprotein B. Circulation. 2018 09 11; 138(11):1130-1143. Kimura T, Kobiyama K, Winkels H, Tse K, Miller J, Vassallo M, Wolf D, Ryden C, Orecchioni M, Dileepan T, Jenkins MK, James EA, Kwok WW, Hanna DB, Kaplan RC, Strickler HD, Durkin HG, Kassaye SG, Karim R, Tien PC, Landay AL, Gange SJ, Sidney J, Sette A, Ley K. PMID: 29588316; PMCID: PMC6160361.
      View in: PubMed   Mentions: 77     Fields:    Translation:HumansAnimalsCellsPHPublic Health
    320. Host resistance to pulmonary Mycobacterium tuberculosis infection requires CD153 expression. Nat Microbiol. 2018 11; 3(11):1198-1205. Sallin MA, Kauffman KD, Riou C, Du Bruyn E, Foreman TW, Sakai S, Hoft SG, Myers TG, Gardina PJ, Sher A, Moore R, Wilder-Kofie T, Moore IN, Sette A, Lindestam Arlehamn CS, Wilkinson RJ, Barber DL. PMID: 30202016.
      View in: PubMed   Mentions: 28     Fields:    Translation:HumansAnimalsCells
    321. Predicting T cell recognition of MHC class I restricted neoepitopes. Oncoimmunology. 2018; 7(11):e1492508. Kosaloglu-Yalçin Z, Lanka M, Frentzen A, Logandha Ramamoorthy Premlal A, Sidney J, Vaughan K, Greenbaum J, Robbins P, Gartner J, Sette A, Peters B. PMID: 30377561; PMCID: PMC6204999.
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    322. Identification of Mycobacterial Ribosomal Proteins as Targets for CD4+ T Cells That Enhance Protective Immunity in Tuberculosis. Infect Immun. 2018 09; 86(9). Kennedy SC, Johnson AJ, Bharrhan S, Lindestam Arlehamn CS, Xu J, Garforth SJ, Chan J, Jacobs WR, Sette A, Almo SC, Porcelli SA. PMID: 29891545; PMCID: PMC6105890.
      View in: PubMed   Mentions: 3     Fields:    Translation:AnimalsCells
    323. Disruption of an antimycobacterial circuit between dendritic and helper T cells in human SPPL2a deficiency. Nat Immunol. 2018 09; 19(9):973-985. Kong XF, Martinez-Barricarte R, Kennedy J, Mele F, Lazarov T, Deenick EK, Ma CS, Breton G, Lucero KB, Langlais D, Bousfiha A, Aytekin C, Markle J, Trouillet C, Jabot-Hanin F, Arlehamn CSL, Rao G, Picard C, Lasseau T, Latorre D, Hambleton S, Deswarte C, Itan Y, Abarca K, Moraes-Vasconcelos D, Ailal F, Ikinciogullari A, Dogu F, Benhsaien I, Sette A, Abel L, Boisson-Dupuis S, Schröder B, Nussenzweig MC, Liu K, Geissmann F, Tangye SG, Gros P, Sallusto F, Bustamante J, Casanova JL. PMID: 30127434; PMCID: PMC6130844.
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    324. Determination of a Predictive Cleavage Motif for Eluted Major Histocompatibility Complex Class II Ligands. Front Immunol. 2018; 9:1795. Paul S, Karosiene E, Dhanda SK, Jurtz V, Edwards L, Nielsen M, Sette A, Peters B. PMID: 30127785; PMCID: PMC6087742.
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    325. Development of a novel clustering tool for linear peptide sequences. Immunology. 2018 11; 155(3):331-345. Dhanda SK, Vaughan K, Schulten V, Grifoni A, Weiskopf D, Sidney J, Peters B, Sette A. PMID: 30014462; PMCID: PMC6187223.
      View in: PubMed   Mentions: 37     Fields:    Translation:Animals
    326. Th1/Th17 polarization persists following whole-cell pertussis vaccination despite repeated acellular boosters. J Clin Invest. 2018 08 31; 128(9):3853-3865. da Silva Antunes R, Babor M, Carpenter C, Khalil N, Cortese M, Mentzer AJ, Seumois G, Petro CD, Purcell LA, Vijayanand P, Crotty S, Pulendran B, Peters B, Sette A. PMID: 29920186; PMCID: PMC6118631.
      View in: PubMed   Mentions: 62     Fields:    Translation:HumansCells
    327. Predicting HLA CD4 Immunogenicity in Human Populations. Front Immunol. 2018; 9:1369. Dhanda SK, Karosiene E, Edwards L, Grifoni A, Paul S, Andreatta M, Weiskopf D, Sidney J, Nielsen M, Peters B, Sette A. PMID: 29963059; PMCID: PMC6010533.
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    328. Minimal Information About an Immuno-Peptidomics Experiment (MIAIPE). Proteomics. 2018 06; 18(12):e1800110. Lill JR, van Veelen PA, Tenzer S, Admon A, Caron E, Elias JE, Heck AJR, Marcilla M, Marino F, Müller M, Peters B, Purcell A, Sette A, Sturm T, Ternette N, Vizcaíno JA, Bassani-Sternberg M. PMID: 29791771; PMCID: PMC6033177.
      View in: PubMed   Mentions: 9     Fields:    Translation:Humans
    329. The effect of acylation with fatty acids and other modifications on HLA class II:peptide binding and T cell stimulation for three model peptides. PLoS One. 2018; 13(5):e0197407. Schultz HS, Østergaard S, Sidney J, Lamberth K, Sette A. PMID: 29758051; PMCID: PMC5951580.
      View in: PubMed   Mentions: 6     Fields:    Translation:HumansCells
    330. Microbiota epitope similarity either dampens or enhances the immunogenicity of disease-associated antigenic epitopes. PLoS One. 2018; 13(5):e0196551. Carrasco Pro S, Lindestam Arlehamn CS, Dhanda SK, Carpenter C, Lindvall M, Faruqi AA, Santee CA, Renz H, Sidney J, Peters B, Sette A. PMID: 29734356; PMCID: PMC5937769.
      View in: PubMed   Mentions: 25     Fields:    Translation:HumansCells
    331. Urinary Peptides As a Novel Source of T Cell Allergen Epitopes. Front Immunol. 2018; 9:886. da Silva Antunes R, Pham J, McMurtrey C, Hildebrand WH, Phillips E, Mallal S, Sidney J, Busse P, Peters B, Schulten V, Sette A. PMID: 29755469; PMCID: PMC5932195.
      View in: PubMed   Mentions: 9     Fields:    Translation:HumansAnimalsCells
    332. DAFi: A directed recursive data filtering and clustering approach for improving and interpreting data clustering identification of cell populations from polychromatic flow cytometry data. Cytometry A. 2018 06; 93(6):597-610. Lee AJ, Chang I, Burel JG, Lindestam Arlehamn CS, Mandava A, Weiskopf D, Peters B, Sette A, Scheuermann RH, Qian Y. PMID: 29665244; PMCID: PMC6030426.
      View in: PubMed   Mentions: 6     Fields:    Translation:HumansCells
    333. Transcriptomic Analysis of CD4+ T Cells Reveals Novel Immune Signatures of Latent Tuberculosis. J Immunol. 2018 05 01; 200(9):3283-3290. Burel JG, Lindestam Arlehamn CS, Khan N, Seumois G, Greenbaum JA, Taplitz R, Gilman RH, Saito M, Vijayanand P, Sette A, Peters B. PMID: 29602771; PMCID: PMC5991485.
      View in: PubMed   Mentions: 33     Fields:    Translation:HumansCells
    334. Low HLA binding of diabetes-associated CD8+ T-cell epitopes is increased by post translational modifications. BMC Immunol. 2018 03 21; 19(1):12. Sidney J, Vela JL, Friedrich D, Kolla R, von Herrath M, Wesley JD, Sette A. PMID: 29562882; PMCID: PMC5863483.
      View in: PubMed   Mentions: 20     Fields:    Translation:HumansCells
    335. Sequence-based HLA-A, B, C, DP, DQ, and DR typing of 159 individuals from the Worcester region of the Western Cape province of South Africa. Hum Immunol. 2018 Mar; 79(3):143-144. Grifoni A, Sidney J, Carpenter C, Phillips E, Mallal S, Scriba TJ, Sette A, Lindestam Arlehamn CS. PMID: 29398200.
      View in: PubMed   Mentions: 3     Fields:    Translation:HumansCells
    336. Development of Envelope Protein Antigens To Serologically Differentiate Zika Virus Infection from Dengue Virus Infection. J Clin Microbiol. 2018 03; 56(3). Premkumar L, Collins M, Graham S, Liou GA, Lopez CA, Jadi R, Balmaseda A, Brackbill JA, Dietze R, Camacho E, De Silva AD, Giuberti C, Dos Reis HL, Singh T, Heimsath H, Weiskopf D, Sette A, Osorio JE, Permar SR, Miley MJ, Lazear HM, Harris E, de Silva AM. PMID: 29263206; PMCID: PMC5824056.
      View in: PubMed   Mentions: 32     Fields:    Translation:HumansCellsPHPublic Health
    337. Correction: Definition of Human Epitopes Recognized in Tetanus Toxoid and Development of an Assay Strategy to Detect Ex Vivo Tetanus CD4+ T Cell Responses. PLoS One. 2018; 13(2):e0193382. da Silva Antunes R, Paul S, Sidney J, Weiskopf D, Dan JM, Phillips E, Mallal S, Crotty S, Sette A, Lindestam Arlehamn CS. PMID: 29462188; PMCID: PMC5819815.
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    338. Allergen and Epitope Targets of Mouse-Specific T Cell Responses in Allergy and Asthma. Front Immunol. 2018; 9:235. Schulten V, Westernberg L, Birrueta G, Sidney J, Paul S, Busse P, Peters B, Sette A. PMID: 29487600; PMCID: PMC5816932.
      View in: PubMed   Mentions: 11     Fields:    Translation:HumansAnimalsCells
    339. Improved methods for predicting peptide binding affinity to MHC class II molecules. Immunology. 2018 07; 154(3):394-406. Jensen KK, Andreatta M, Marcatili P, Buus S, Greenbaum JA, Yan Z, Sette A, Peters B, Nielsen M. PMID: 29315598; PMCID: PMC6002223.
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    340. Precursors of human CD4+ cytotoxic T lymphocytes identified by single-cell transcriptome analysis. Sci Immunol. 2018 01 19; 3(19). Patil VS, Madrigal A, Schmiedel BJ, Clarke J, O'Rourke P, de Silva AD, Harris E, Peters B, Seumois G, Weiskopf D, Sette A, Vijayanand P. PMID: 29352091; PMCID: PMC5931334.
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    341. The SysteMHC Atlas project. Nucleic Acids Res. 2018 01 04; 46(D1):D1237-D1247. Shao W, Pedrioli PGA, Wolski W, Scurtescu C, Schmid E, Vizcaíno JA, Courcelles M, Schuster H, Kowalewski D, Marino F, Arlehamn CSL, Vaughan K, Peters B, Sette A, Ottenhoff THM, Meijgaarden KE, Nieuwenhuizen N, Kaufmann SHE, Schlapbach R, Castle JC, Nesvizhskii AI, Nielsen M, Deutsch EW, Campbell DS, Moritz RL, Zubarev RA, Ytterberg AJ, Purcell AW, Marcilla M, Paradela A, Wang Q, Costello CE, Ternette N, van Veelen PA, van Els CACM, Heck AJR, de Souza GA, Sollid LM, Admon A, Stevanovic S, Rammensee HG, Thibault P, Perreault C, Bassani-Sternberg M, Aebersold R, Caron E. PMID: 28985418; PMCID: PMC5753376.
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    342. FAIR principles and the IEDB: short-term improvements and a long-term vision of OBO-foundry mediated machine-actionable interoperability. Database (Oxford). 2018 01 01; 2018. Vita R, Overton JA, Mungall CJ, Sette A, Peters B. PMID: 29688354; PMCID: PMC5819722.
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    343. Large-Scale Epitope Identification Screen and Its Potential Application to the Study of Alopecia Areata. J Investig Dermatol Symp Proc. 2018 01; 19(1):S54-S56. Lindestam Arlehamn CS, Paul S, Chun Wang EH, de Jong A, Christiano AM, Sette A. PMID: 29273108.
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    344. The Identification of Allergen-Derived T Cell Epitopes. Methods Mol Biol. 2018; 1799:153-163. Schulten V, Sette A. PMID: 29956151.
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    345. Sequence-based HLA-A, B, C, DP, DQ, and DR typing of 714 adults from Colombo, Sri Lanka. Hum Immunol. 2018 Feb; 79(2):87-88. Grifoni A, Weiskopf D, Lindestam Arlehamn CS, Angelo M, Leary S, Sidney J, Frazier A, Phillips E, Mallal S, Mack SJ, Tippalagama R, Goonewardana S, Premawansa S, Premawansa G, Wijewickrama A, De Silva AD, Sette A. PMID: 29289740; PMCID: PMC6378951.
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    346. Ontogeny of the B- and T-cell response in a primary Zika virus infection of a dengue-naïve individual during the 2016 outbreak in Miami, FL. PLoS Negl Trop Dis. 2017 12; 11(12):e0006000. Ricciardi MJ, Magnani DM, Grifoni A, Kwon YC, Gutman MJ, Grubaugh ND, Gangavarapu K, Sharkey M, Silveira CGT, Bailey VK, Pedreño-Lopez N, Gonzalez-Nieto L, Maxwell HS, Domingues A, Martins MA, Pham J, Weiskopf D, Altman J, Kallas EG, Andersen KG, Stevenson M, Lichtenberger P, Choe H, Whitehead SS, Sette A, Watkins DI. PMID: 29267278; PMCID: PMC5755934.
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    347. Novel and shared neoantigen derived from histone 3 variant H3.3K27M mutation for glioma T cell therapy. J Exp Med. 2018 01 02; 215(1):141-157. Chheda ZS, Kohanbash G, Okada K, Jahan N, Sidney J, Pecoraro M, Yang X, Carrera DA, Downey KM, Shrivastav S, Liu S, Lin Y, Lagisetti C, Chuntova P, Watchmaker PB, Mueller S, Pollack IF, Rajalingam R, Carcaboso AM, Mann M, Sette A, Garcia KC, Hou Y, Okada H. PMID: 29203539; PMCID: PMC5748856.
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    348. Prior Dengue Virus Exposure Shapes T Cell Immunity to Zika Virus in Humans. J Virol. 2017 12 15; 91(24). Grifoni A, Pham J, Sidney J, O'Rourke PH, Paul S, Peters B, Martini SR, de Silva AD, Ricciardi MJ, Magnani DM, Silveira CGT, Maestri A, Costa PR, de-Oliveira-Pinto LM, de Azeredo EL, Damasco PV, Phillips E, Mallal S, de Silva AM, Collins M, Durbin A, Diehl SA, Cerpas C, Balmaseda A, Kuan G, Coloma J, Harris E, Crowe JE, Stone M, Norris PJ, Busch M, Vivanco-Cid H, Cox J, Graham BS, Ledgerwood JE, Turtle L, Solomon T, Kallas EG, Watkins DI, Weiskopf D, Sette A. PMID: 28978707; PMCID: PMC5709580.
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    349. Unique phenotypes and clonal expansions of human CD4 effector memory T cells re-expressing CD45RA. Nat Commun. 2017 11 13; 8(1):1473. Tian Y, Babor M, Lane J, Schulten V, Patil VS, Seumois G, Rosales SL, Fu Z, Picarda G, Burel J, Zapardiel-Gonzalo J, Tennekoon RN, De Silva AD, Premawansa S, Premawansa G, Wijewickrama A, Greenbaum JA, Vijayanand P, Weiskopf D, Sette A, Peters B. PMID: 29133794; PMCID: PMC5684192.
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    350. Novel Plasmodium antigens identified via genome-based antibody screen induce protection associated with polyfunctional T cell responses. Sci Rep. 2017 11 08; 7(1):15053. Schussek S, Trieu A, Apte SH, Sidney J, Sette A, Doolan DL. PMID: 29118376; PMCID: PMC5678182.
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    351. Sequence-based HLA-A, B, C, DP, DQ, and DR typing of 339 adults from Managua, Nicaragua. Hum Immunol. 2018 Jan; 79(1):1-2. Weiskopf D, Grifoni A, Arlehamn CSL, Angelo M, Leary S, Sidney J, Frazier A, Mack SJ, Phillips E, Mallal S, Cerpas C, Balmaseda A, Harris E, Sette A. PMID: 29122684; PMCID: PMC5788571.
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    352. Profiling MHC II immunopeptidome of blood-stage malaria reveals that cDC1 control the functionality of parasite-specific CD4 T cells. EMBO Mol Med. 2017 11; 9(11):1605-1621. Draheim M, Wlodarczyk MF, Crozat K, Saliou JM, Alayi TD, Tomavo S, Hassan A, Salvioni A, Demarta-Gatsi C, Sidney J, Sette A, Dalod M, Berry A, Silvie O, Blanchard N. PMID: 28935714; PMCID: PMC5666312.
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    353. Global Assessment of Dengue Virus-Specific CD4+ T Cell Responses in Dengue-Endemic Areas. Front Immunol. 2017; 8:1309. Grifoni A, Angelo MA, Lopez B, O'Rourke PH, Sidney J, Cerpas C, Balmaseda A, Silveira CGT, Maestri A, Costa PR, Durbin AP, Diehl SA, Phillips E, Mallal S, De Silva AD, Nchinda G, Nkenfou C, Collins MH, de Silva AM, Lim MQ, Macary PA, Tatullo F, Solomon T, Satchidanandam V, Desai A, Ravi V, Coloma J, Turtle L, Rivino L, Kallas EG, Peters B, Harris E, Sette A, Weiskopf D. PMID: 29081779; PMCID: PMC5646259.
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    354. Development of a strategy and computational application to select candidate protein analogues with reduced HLA binding and immunogenicity. Immunology. 2018 01; 153(1):118-132. Dhanda SK, Grifoni A, Pham J, Vaughan K, Sidney J, Peters B, Sette A. PMID: 28833085; PMCID: PMC5721253.
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    355. Differential Recognition of Mycobacterium tuberculosis-Specific Epitopes as a Function of Tuberculosis Disease History. Am J Respir Crit Care Med. 2017 09 15; 196(6):772-781. Scriba TJ, Carpenter C, Pro SC, Sidney J, Musvosvi M, Rozot V, Seumois G, Rosales SL, Vijayanand P, Goletti D, Makgotlho E, Hanekom W, Hatherill M, Peters B, Sette A, Arlehamn CSL. PMID: 28759253; PMCID: PMC5620682.
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    356. Erratum: T cells from patients with Parkinson's disease recognize α-synuclein peptides. Nature. 2017 09 13; 549(7671):292. Sulzer D, Alcalay RN, Garretti F, Cote L, Kanter E, Agin-Liebes J, Liong C, McMurtrey C, Hildebrand WH, Mao X, Dawson VL, Dawson TM, Oseroff C, Pham J, Sidney J, Dillon MB, Carpenter C, Weiskopf D, Phillips E, Mallal S, Peters B, Frazier A, Arlehamn CSL, Sette A. PMID: 28905919; PMCID: PMC10204083.
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    357. Protein nanovaccine confers robust immunity against Toxoplasma. NPJ Vaccines. 2017; 2:24. El Bissati K, Zhou Y, Paulillo SM, Raman SK, Karch CP, Roberts CW, Lanar DE, Reed S, Fox C, Carter D, Alexander J, Sette A, Sidney J, Lorenzi H, Begeman IJ, Burkhard P, McLeod R. PMID: 29263879; PMCID: PMC5627305.
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    358. Large Scale Epitope Identification Screen and Its Potential Application to the Study of Alopecia Areata. J Invest Dermatol. 2017 Aug 29. Lindestam Arlehamn CS, Paul S, Wang EHC, de Jong A, Christiano AM, Sette A. PMID: 28864075.
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    359. Deciphering the MHC-associated peptidome: a review of naturally processed ligand data. Expert Rev Proteomics. 2017 09; 14(9):729-736. Vaughan K, Xu X, Caron E, Peters B, Sette A. PMID: 28756714.
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    360. Erratum for Verma et al., "Cytomegalovirus-Specific CD4 T Cells Are Cytolytic and Mediate Vaccine Protection". J Virol. 2017 09 01; 91(17). Verma S, Weiskopf D, Gupta A, McDonald B, Peters B, Sette A, Benedict CA. PMID: 28798100; PMCID: PMC5553172.
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    361. Waning Immunity and Microbial Vaccines-Workshop of the National Institute of Allergy and Infectious Diseases. Clin Vaccine Immunol. 2017 Jul; 24(7). Gu XX, Plotkin SA, Edwards KM, Sette A, Mills KHG, Levy O, Sant AJ, Mo A, Alexander W, Lu KT, Taylor CE. PMID: 28490424; PMCID: PMC5498725.
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    362. Identifying specificity groups in the T cell receptor repertoire. Nature. 2017 07 06; 547(7661):94-98. Glanville J, Huang H, Nau A, Hatton O, Wagar LE, Rubelt F, Ji X, Han A, Krams SM, Pettus C, Haas N, Arlehamn CSL, Sette A, Boyd SD, Scriba TJ, Martinez OM, Davis MM. PMID: 28636589; PMCID: PMC5794212.
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    363. T cells from patients with Parkinson's disease recognize α-synuclein peptides. Nature. 2017 06 29; 546(7660):656-661. Sulzer D, Alcalay RN, Garretti F, Cote L, Kanter E, Agin-Liebes J, Liong C, McMurtrey C, Hildebrand WH, Mao X, Dawson VL, Dawson TM, Oseroff C, Pham J, Sidney J, Dillon MB, Carpenter C, Weiskopf D, Phillips E, Mallal S, Peters B, Frazier A, Lindestam Arlehamn CS, Sette A. PMID: 28636593; PMCID: PMC5626019.
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    364. Experimental validation of the RATE tool for inferring HLA restrictions of T cell epitopes. BMC Immunol. 2017 06 21; 18(Suppl 1):20. Paul S, Arlehamn CSL, Schulten V, Westernberg L, Sidney J, Peters B, Sette A. PMID: 28681704; PMCID: PMC5499093.
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    365. Machine learning reveals a non-canonical mode of peptide binding to MHC class II molecules. Immunology. 2017 10; 152(2):255-264. Andreatta M, Jurtz VI, Kaever T, Sette A, Peters B, Nielsen M. PMID: 28542831; PMCID: PMC5588850.
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    366. Lack of evidence for post-vaccine onset of autoimmune/lymphoproliferative disorders, during a nine-month follow-up in multiply vaccinated Italian military personnel. Clin Immunol. 2017 08; 181:60-66. Ferlito C, Barnaba V, Abrignani S, Bombaci M, Sette A, Sidney J, Biselli R, Tomao E, Cattaruzza MS, Germano V, Biondo MI, Salerno G, Lulli P, Caporuscio S, Picchianti Diamanti A, Falco M, Biselli V, Cardelli P, Autore A, Lucertini E, De Cesare DP, Peragallo MS, Lista F, Martire C, Salemi S, Nisini R, D'Amelio R. PMID: 28625884.
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    367. A Case of Human Lassa Virus Infection With Robust Acute T-Cell Activation and Long-Term Virus-Specific T-Cell Responses. J Infect Dis. 2017 06 15; 215(12):1862-1872. McElroy AK, Akondy RS, Harmon JR, Ellebedy AH, Cannon D, Klena JD, Sidney J, Sette A, Mehta AK, Kraft CS, Lyon MG, Varkey JB, Ribner BS, Nichol ST, Spiropoulou CF. PMID: 28863472; PMCID: PMC5853890.
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    368. Antigen Availability Shapes T Cell Differentiation and Function during Tuberculosis. Cell Host Microbe. 2017 Jun 14; 21(6):695-706.e5. Moguche AO, Musvosvi M, Penn-Nicholson A, Plumlee CR, Mearns H, Geldenhuys H, Smit E, Abrahams D, Rozot V, Dintwe O, Hoff ST, Kromann I, Ruhwald M, Bang P, Larson RP, Shafiani S, Ma S, Sherman DR, Sette A, Lindestam Arlehamn CS, McKinney DM, Maecker H, Hanekom WA, Hatherill M, Andersen P, Scriba TJ, Urdahl KB. PMID: 28618268; PMCID: PMC5533182.
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    369. The Immune Epitope Database: How Data Are Entered and Retrieved. J Immunol Res. 2017; 2017:5974574. Fleri W, Vaughan K, Salimi N, Vita R, Peters B, Sette A. PMID: 28634590; PMCID: PMC5467323.
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    370. Bolstering the Number and Function of HSV-1-Specific CD8+ Effector Memory T Cells and Tissue-Resident Memory T Cells in Latently Infected Trigeminal Ganglia Reduces Recurrent Ocular Herpes Infection and Disease. J Immunol. 2017 07 01; 199(1):186-203. Khan AA, Srivastava R, Chentoufi AA, Kritzer E, Chilukuri S, Garg S, Yu DC, Vahed H, Huang L, Syed SA, Furness JN, Tran TT, Anthony NB, McLaren CE, Sidney J, Sette A, Noelle RJ, BenMohamed L. PMID: 28539429; PMCID: PMC5515716.
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    371. Allergen-specific immunotherapy modulates the balance of circulating Tfh and Tfr cells. J Allergy Clin Immunol. 2018 02; 141(2):775-777.e6. Schulten V, Tripple V, Seumois G, Qian Y, Scheuermann RH, Fu Z, Locci M, Rosales S, Vijayanand P, Sette A, Alam R, Crotty S, Peters B. PMID: 28506846; PMCID: PMC5682232.
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    372. Metabolic Phenotypes of Response to Vaccination in Humans. Cell. 2017 May 18; 169(5):862-877.e17. Li S, Sullivan NL, Rouphael N, Yu T, Banton S, Maddur MS, McCausland M, Chiu C, Canniff J, Dubey S, Liu K, Tran V, Hagan T, Duraisingham S, Wieland A, Mehta AK, Whitaker JA, Subramaniam S, Jones DP, Sette A, Vora K, Weinberg A, Mulligan MJ, Nakaya HI, Levin M, Ahmed R, Pulendran B. PMID: 28502771; PMCID: PMC5711477.
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    373. Epitope-specific immunotherapy targeting CD4-positive T cells in coeliac disease: two randomised, double-blind, placebo-controlled phase 1 studies. Lancet Gastroenterol Hepatol. 2017 07; 2(7):479-493. Goel G, King T, Daveson AJ, Andrews JM, Krishnarajah J, Krause R, Brown GJE, Fogel R, Barish CF, Epstein R, Kinney TP, Miner PB, Tye-Din JA, Girardin A, Taavela J, Popp A, Sidney J, Mäki M, Goldstein KE, Griffin PH, Wang S, Dzuris JL, Williams LJ, Sette A, Xavier RJ, Sollid LM, Jabri B, Anderson RP. PMID: 28506538; PMCID: PMC5676538.
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    374. Citrullination only infrequently impacts peptide binding to HLA class II MHC. PLoS One. 2017; 12(5):e0177140. Sidney J, Becart S, Zhou M, Duffy K, Lindvall M, Moore EC, Moore EL, Rao T, Rao N, Nielsen M, Peters B, Sette A. PMID: 28481943; PMCID: PMC5421785.
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    375. Patterns of Cellular Immunity Associated with Experimental Infection with rDEN2Δ30 (Tonga/74) Support Its Suitability as a Human Dengue Virus Challenge Strain. J Virol. 2017 Apr 15; 91(8). Grifoni A, Angelo M, Sidney J, Paul S, Peters B, de Silva AD, Phillips E, Mallal S, Diehl SA, Botten J, Boyson J, Kirkpatrick BD, Whitehead SS, Durbin AP, Sette A, Weiskopf D. PMID: 28148797; PMCID: PMC5375662.
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    376. Portrait of an optimist. Hum Vaccin Immunother. 2017 06 03; 13(6):1-3. Sette A. PMID: 28350507; PMCID: PMC5489282.
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    377. Identification of Mycobacterial RplJ/L10 and RpsA/S1 Proteins as Novel Targets for CD4+ T Cells. Infect Immun. 2017 04; 85(4). Johnson AJ, Kennedy SC, Lindestam Arlehamn CS, Goldberg MF, Saini NK, Xu J, Paul S, Hegde SS, Blanchard JS, Chan J, Jacobs WR, Sette A, Porcelli SA. PMID: 28115505; PMCID: PMC5364311.
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    378. Peptide-binding motifs of two common equine class I MHC molecules in Thoroughbred horses. Immunogenetics. 2017 05; 69(5):351-358. Bergmann T, Lindvall M, Moore E, Moore E, Sidney J, Miller D, Tallmadge RL, Myers PT, Malaker SA, Shabanowitz J, Osterrieder N, Peters B, Hunt DF, Antczak DF, Sette A. PMID: 28315936; PMCID: PMC5555743.
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    379. Sequence-based HLA-A, B, C, DP, DQ, and DR typing of 100 Luo infants from the Boro area of Nyanza Province, Kenya. Hum Immunol. 2017 Apr; 78(4):325-326. Arlehamn CS, Copin R, Leary S, Mack SJ, Phillips E, Mallal S, Sette A, Blatner G, Siefers H, Ernst JD, TBRU-ASTRa Study Team. PMID: 28315719; PMCID: PMC5519768.
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    380. The Immune Epitope Database and Analysis Resource in Epitope Discovery and Synthetic Vaccine Design. Front Immunol. 2017; 8:278. Fleri W, Paul S, Dhanda SK, Mahajan S, Xu X, Peters B, Sette A. PMID: 28352270; PMCID: PMC5348633.
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    381. Identification of Zika virus epitopes reveals immunodominant and protective roles for dengue virus cross-reactive CD8+ T cells. Nat Microbiol. 2017 Mar 13; 2:17036. Wen J, Tang WW, Sheets N, Ellison J, Sette A, Kim K, Shresta S. PMID: 28288094; PMCID: PMC5918137.
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    382. Mapping the Human Memory B Cell and Serum Neutralizing Antibody Responses to Dengue Virus Serotype 4 Infection and Vaccination. J Virol. 2017 03 01; 91(5). Nivarthi UK, Kose N, Sapparapu G, Widman D, Gallichotte E, Pfaff JM, Doranz BJ, Weiskopf D, Sette A, Durbin AP, Whitehead SS, Baric R, Crowe JE, de Silva AM. PMID: 28031369; PMCID: PMC5309932.
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    383. Human CD4+ T Cell Responses to an Attenuated Tetravalent Dengue Vaccine Parallel Those Induced by Natural Infection in Magnitude, HLA Restriction, and Antigen Specificity. J Virol. 2017 03 01; 91(5). Angelo MA, Grifoni A, O'Rourke PH, Sidney J, Paul S, Peters B, de Silva AD, Phillips E, Mallal S, Diehl SA, Kirkpatrick BD, Whitehead SS, Durbin AP, Sette A, Weiskopf D. PMID: 27974563; PMCID: PMC5309943.
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    384. Gliadin-Specific CD8+ T Cell Responses Restricted by HLA Class I A*0101 and B*0801 Molecules in Celiac Disease Patients. J Immunol. 2017 03 01; 198(5):1838-1845. Picascia S, Sidney J, Camarca A, Mazzarella G, Giardullo N, Greco L, Auricchio R, Auricchio S, Troncone R, Sette A, Gianfrani C. PMID: 28148736.
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    385. Correction: Preventing tumor escape by targeting a post-proteasomal trimming independent epitope. J Exp Med. 2017 02; 214(2):567. Textor A, Schmidt K, Kloetzel PM, Weißbrich B, Perez C, Charo J, Anders K, Sidney J, Sette A, Schumacher TN, Keller C, Busch DH, Seifert U, Blankenstein T. PMID: 28096291; PMCID: PMC5294854.
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    386. Atheroprotective vaccination with MHC-II-restricted ApoB peptides induces peritoneal IL-10-producing CD4 T cells. Am J Physiol Heart Circ Physiol. 2017 Apr 01; 312(4):H781-H790. Kimura T, Tse K, McArdle S, Gerhardt T, Miller J, Mikulski Z, Sidney J, Sette A, Wolf D, Ley K. PMID: 28087520; PMCID: PMC5407161.
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    387. Definition of Human Epitopes Recognized in Tetanus Toxoid and Development of an Assay Strategy to Detect Ex Vivo Tetanus CD4+ T Cell Responses. PLoS One. 2017; 12(1):e0169086. da Silva Antunes R, Paul S, Sidney J, Weiskopf D, Dan JM, Phillips E, Mallal S, Crotty S, Sette A, Lindestam Arlehamn CS. PMID: 28081174; PMCID: PMC5230748.
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    388. An Integrated Workflow To Assess Technical and Biological Variability of Cell Population Frequencies in Human Peripheral Blood by Flow Cytometry. J Immunol. 2017 02 15; 198(4):1748-1758. Burel JG, Qian Y, Lindestam Arlehamn C, Weiskopf D, Zapardiel-Gonzalo J, Taplitz R, Gilman RH, Saito M, de Silva AD, Vijayanand P, Scheuermann RH, Sette A, Peters B. PMID: 28069807; PMCID: PMC5296239.
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    389. Better living through ontologies at the Immune Epitope Database. Database (Oxford). 2017 01 01; 2017(1). Vita R, Overton JA, Sette A, Peters B. PMID: 28365732; PMCID: PMC5467561.
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    390. It's a lot of work to be nonallergic. J Allergy Clin Immunol. 2017 03; 139(3):769-770. Sette A, Schulten V. PMID: 27993537; PMCID: PMC5465425.
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    391. Cytotoxic CD4 T Cells: Differentiation, Function, and Application to Dengue Virus Infection. Front Immunol. 2016; 7:531. Tian Y, Sette A, Weiskopf D. PMID: 28003809; PMCID: PMC5141332.
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    392. Immunodominance in allergic T-cell reactivity to Japanese cedar in different geographic cohorts. Ann Allergy Asthma Immunol. 2016 12; 117(6):680-689.e1. Oseroff C, Pham J, Frazier A, Hinz D, Sidney J, Paul S, Greenbaum JA, Vita R, Peters B, Schulten V, Sette A. PMID: 27979027; PMCID: PMC5172395.
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    393. 17q21 asthma-risk variants switch CTCF binding and regulate IL-2 production by T cells. Nat Commun. 2016 11 16; 7:13426. Schmiedel BJ, Seumois G, Samaniego-Castruita D, Cayford J, Schulten V, Chavez L, Ay F, Sette A, Peters B, Vijayanand P. PMID: 27848966; PMCID: PMC5116091.
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    394. Identifying Candidate Targets of Immune Responses in Zika Virus Based on Homology to Epitopes in Other Flavivirus Species. PLoS Curr. 2016 Nov 15; 8. Xu X, Vaughan K, Weiskopf D, Grifoni A, Diamond MS, Sette A, Peters B. PMID: 28018746; PMCID: PMC5145810.
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    395. Immunoproteomic analysis of house dust mite antigens reveals distinct classes of dominant T cell antigens according to function and serological reactivity. Clin Exp Allergy. 2017 Apr; 47(4):577-592. Oseroff C, Christensen LH, Westernberg L, Pham J, Lane J, Paul S, Greenbaum J, Stranzl T, Lund G, Hoof I, Holm J, Würtzen PA, Meno KH, Frazier A, Schulten V, Andersen PS, Peters B, Sette A. PMID: 27684489; PMCID: PMC5374056.
      View in: PubMed   Mentions: 6     Fields:    Translation:HumansCells
    396. A large fraction of HLA class I ligands are proteasome-generated spliced peptides. Science. 2016 10 21; 354(6310):354-358. Liepe J, Marino F, Sidney J, Jeko A, Bunting DE, Sette A, Kloetzel PM, Stumpf MP, Heck AJ, Mishto M. PMID: 27846572.
      View in: PubMed   Mentions: 166     Fields:    Translation:HumansCells
    397. HIV Interferes with Mycobacterium tuberculosis Antigen Presentation in Human Dendritic Cells. Am J Pathol. 2016 12; 186(12):3083-3093. Singh SK, Andersson AM, Ellegård R, Lindestam Arlehamn CS, Sette A, Larsson M, Stendahl O, Blomgran R. PMID: 27746182.
      View in: PubMed   Mentions: 8     Fields:    Translation:HumansCells
    398. Protective Role of Cross-Reactive CD8 T Cells Against Dengue Virus Infection. EBioMedicine. 2016 Nov; 13:284-293. Elong Ngono A, Chen HW, Tang WW, Joo Y, King K, Weiskopf D, Sidney J, Sette A, Shresta S. PMID: 27746192; PMCID: PMC5264312.
      View in: PubMed   Mentions: 58     Fields:    Translation:AnimalsCells
    399. Preventing tumor escape by targeting a post-proteasomal trimming independent epitope. J Exp Med. 2016 10 17; 213(11):2333-2348. Textor A, Schmidt K, Kloetzel PM, Weißbrich B, Perez C, Charo J, Anders K, Sidney J, Sette A, Schumacher TN, Keller C, Busch DH, Seifert U, Blankenstein T. PMID: 27697836; PMCID: PMC5068242.
      View in: PubMed   Mentions: 11     Fields:    Translation:AnimalsCells
    400. Response to Comment on "A Cytokine-Independent Approach To Identify Antigen-Specific Human Germinal Center T Follicular Helper Cells and Rare Antigen-Specific CD4+ T Cells in Blood". J Immunol. 2016 10 01; 197(7):2558. Dan JM, Havenar-Daughton C, Silvestri G, Sette A, Crotty S. PMID: 27638936.
      View in: PubMed   Mentions:    Fields:    Translation:HumansCells
    401. Adjuvanted multi-epitope vaccines protect HLA-A*11:01 transgenic mice against Toxoplasma gondii. JCI Insight. 2016 09 22; 1(15):e85955. El Bissati K, Chentoufi AA, Krishack PA, Zhou Y, Woods S, Dubey JP, Vang L, Lykins J, Broderick KE, Mui E, Suzuki Y, Sa Q, Bi S, Cardona N, Verma SK, Fraczek L, Reardon CA, Sidney J, Alexander J, Sette A, Vedvick T, Fox C, Guderian JA, Reed S, Roberts CW, McLeod R. PMID: 27699241; PMCID: PMC5033759.
      View in: PubMed   Mentions: 25     Fields:    Translation:AnimalsCells
    402. TepiTool: A Pipeline for Computational Prediction of T Cell Epitope Candidates. Curr Protoc Immunol. 2016 08 01; 114:18.19.1-18.19.24. Paul S, Sidney J, Sette A, Peters B. PMID: 27479659; PMCID: PMC4981331.
      View in: PubMed   Mentions: 83     Fields:    Translation:HumansAnimals
    403. Reply. J Allergy Clin Immunol. 2016 10; 138(4):1237-1238. Westernberg L, Schulten V, Sette A, Peters B. PMID: 27484034.
      View in: PubMed   Mentions:    Fields:    
    404. HLA-DRB1 Alleles Are Associated With Different Magnitudes of Dengue Virus-Specific CD4+ T-Cell Responses. J Infect Dis. 2016 10 01; 214(7):1117-24. Weiskopf D, Angelo MA, Grifoni A, O'Rourke PH, Sidney J, Paul S, De Silva AD, Phillips E, Mallal S, Premawansa S, Premawansa G, Wijewickrama A, Peters B, Sette A. PMID: 27443615; PMCID: PMC5021234.
      View in: PubMed   Mentions: 56     Fields:    Translation:HumansCells
    405. A Quantitative Analysis of Complexity of Human Pathogen-Specific CD4 T Cell Responses in Healthy M. tuberculosis Infected South Africans. PLoS Pathog. 2016 07; 12(7):e1005760. Lindestam Arlehamn CS, McKinney DM, Carpenter C, Paul S, Rozot V, Makgotlho E, Gregg Y, van Rooyen M, Ernst JD, Hatherill M, Hanekom WA, Peters B, Scriba TJ, Sette A. PMID: 27409590; PMCID: PMC4943605.
      View in: PubMed   Mentions: 74     Fields:    Translation:HumansCells
    406. A Cytokine-Independent Approach To Identify Antigen-Specific Human Germinal Center T Follicular Helper Cells and Rare Antigen-Specific CD4+ T Cells in Blood. J Immunol. 2016 08 01; 197(3):983-93. Dan JM, Lindestam Arlehamn CS, Weiskopf D, da Silva Antunes R, Havenar-Daughton C, Reiss SM, Brigger M, Bothwell M, Sette A, Crotty S. PMID: 27342848; PMCID: PMC4955771.
      View in: PubMed   Mentions: 140     Fields:    Translation:HumansCells
    407. Transcriptional Profiling of Th2 Cells Identifies Pathogenic Features Associated with Asthma. J Immunol. 2016 07 15; 197(2):655-64. Seumois G, Zapardiel-Gonzalo J, White B, Singh D, Schulten V, Dillon M, Hinz D, Broide DH, Sette A, Peters B, Vijayanand P. PMID: 27271570; PMCID: PMC4936908.
      View in: PubMed   Mentions: 42     Fields:    Translation:HumansCells
    408. Th1 versus Th2 T cell polarization by whole-cell and acellular childhood pertussis vaccines persists upon re-immunization in adolescence and adulthood. Cell Immunol. 2016 Jun-Jul; 304-305:35-43. Bancroft T, Dillon MB, da Silva Antunes R, Paul S, Peters B, Crotty S, Lindestam Arlehamn CS, Sette A. PMID: 27212461; PMCID: PMC4899275.
      View in: PubMed   Mentions: 50     Fields:    Translation:HumansCells
    409. Immunodominant Dengue Virus-Specific CD8+ T Cell Responses Are Associated with a Memory PD-1+ Phenotype. J Virol. 2016 May; 90(9):4771-4779. de Alwis R, Bangs DJ, Angelo MA, Cerpas C, Fernando A, Sidney J, Peters B, Gresh L, Balmaseda A, de Silva AD, Harris E, Sette A, Weiskopf D. PMID: 26912627; PMCID: PMC4836325.
      View in: PubMed   Mentions: 42     Fields:    Translation:HumansCells
    410. Erratum: RSV-specific airway resident memory CD8+ T cells and differential disease severity after experimental human infection. Nat Commun. 2016 Mar 09; 7:11011. Jozwik A, Habibi MS, Paras A, Zhu J, Guvenel A, Dhariwal J, Almond M, Wong EH, Sykes A, Maybeno M, Del Rosario J, Trujillo-Torralbo MB, Mallia P, Sidney J, Peters B, Kon OM, Sette A, Johnston SL, Openshaw PJ, Chiu C. PMID: 26957359; PMCID: PMC4786878.
      View in: PubMed   Mentions: 2     Fields:    
    411. T-cell epitope conservation across allergen species is a major determinant of immunogenicity. J Allergy Clin Immunol. 2016 08; 138(2):571-578.e7. Westernberg L, Schulten V, Greenbaum JA, Natali S, Tripple V, McKinney DM, Frazier A, Hofer H, Wallner M, Sallusto F, Sette A, Peters B. PMID: 26883464; PMCID: PMC4975972.
      View in: PubMed   Mentions: 19     Fields:    Translation:HumansAnimalsCells
    412. T-cell recognition is shaped by epitope sequence conservation in the host proteome and microbiome. Immunology. 2016 May; 148(1):34-9. Bresciani A, Paul S, Schommer N, Dillon MB, Bancroft T, Greenbaum J, Sette A, Nielsen M, Peters B. PMID: 26789414; PMCID: PMC4819143.
      View in: PubMed   Mentions: 18     Fields:    Translation:HumansCells
    413. Reproducibility and conflicts in immune epitope data. Immunology. 2016 Mar; 147(3):349-54. Vita R, Vasilevsky N, Bandrowski A, Haendel M, Sette A, Peters B. PMID: 26678806; PMCID: PMC4754615.
      View in: PubMed   Mentions: 2     Fields:    Translation:Humans
    414. Toxoplasma gondii peptide ligands open the gate of the HLA class I binding groove. Elife. 2016 Jan 29; 5. McMurtrey C, Trolle T, Sansom T, Remesh SG, Kaever T, Bardet W, Jackson K, McLeod R, Sette A, Nielsen M, Zajonc DM, Blader IJ, Peters B, Hildebrand W. PMID: 26824387; PMCID: PMC4775218.
      View in: PubMed   Mentions: 43     Fields:    Translation:HumansAnimalsCells
    415. The Length Distribution of Class I-Restricted T Cell Epitopes Is Determined by Both Peptide Supply and MHC Allele-Specific Binding Preference. J Immunol. 2016 Feb 15; 196(4):1480-7. Trolle T, McMurtrey CP, Sidney J, Bardet W, Osborn SC, Kaever T, Sette A, Hildebrand WH, Nielsen M, Peters B. PMID: 26783342; PMCID: PMC4744552.
      View in: PubMed   Mentions: 93     Fields:    Translation:HumansAnimalsCells
    416. Characterization of the peptide binding specificity of the HLA class I alleles B*38:01 and B*39:06. Immunogenetics. 2016 Mar; 68(3):231-6. Sidney J, Schloss J, Moore C, Lindvall M, Wriston A, Hunt DF, Shabanowitz J, DiLorenzo TP, Sette A. PMID: 26754738; PMCID: PMC4760861.
      View in: PubMed   Mentions: 3     Fields:    Translation:HumansCells
    417. An ontology for major histocompatibility restriction. J Biomed Semantics. 2016; 7:1. Vita R, Overton JA, Seymour E, Sidney J, Kaufman J, Tallmadge RL, Ellis S, Hammond J, Butcher GW, Sette A, Peters B. PMID: 26759709; PMCID: PMC4709943.
      View in: PubMed   Mentions: 11     Fields:    Translation:HumansAnimals
    418. RSV-specific airway resident memory CD8+ T cells and differential disease severity after experimental human infection. Nat Commun. 2015 Dec 21; 6:10224. Jozwik A, Habibi MS, Paras A, Zhu J, Guvenel A, Dhariwal J, Almond M, Wong EHC, Sykes A, Maybeno M, Del Rosario J, Trujillo-Torralbo MB, Mallia P, Sidney J, Peters B, Kon OM, Sette A, Johnston SL, Openshaw PJ, Chiu C. PMID: 26687547; PMCID: PMC4703893.
      View in: PubMed   Mentions: 153     Fields:    Translation:HumansAnimalsCells
    419. T cell neoepitope discovery in colorectal cancer by high throughput profiling of somatic mutations in expressed genes. Gut. 2017 03; 66(3):454-463. Mennonna D, Maccalli C, Romano MC, Garavaglia C, Capocefalo F, Bordoni R, Severgnini M, De Bellis G, Sidney J, Sette A, Gori A, Longhi R, Braga M, Ghirardelli L, Baldari L, Orsenigo E, Albarello L, Zino E, Fleischhauer K, Mazzola G, Ferrero N, Amoroso A, Casorati G, Parmiani G, Dellabona P. PMID: 26681737; PMCID: PMC5534766.
      View in: PubMed   Mentions: 27     Fields:    Translation:HumansCells
    420. Deciphering the human antigenome. Expert Rev Vaccines. 2016; 15(2):167-71. Sette A, Schenkelberg TR, Koff WC. PMID: 26629807.
      View in: PubMed   Mentions: 4     Fields:    Translation:Humans
    421. The Use of the Immune Epitope Database to Study Autoimmune Epitope Data Related to Alopecia Areata. J Investig Dermatol Symp Proc. 2015 Nov; 17(2):36-41. Sette A, Paul S, Vaughan K, Peters B. PMID: 26551944; PMCID: PMC10198045.
      View in: PubMed   Mentions: 2     Fields:    Translation:Humans
    422. The T210M Substitution in the HLA-a*02:01 gp100 Epitope Strongly Affects Overall Proteasomal Cleavage Site Usage and Antigen Processing. J Biol Chem. 2015 Dec 18; 290(51):30417-28. Textoris-Taube K, Keller C, Liepe J, Henklein P, Sidney J, Sette A, Kloetzel PM, Mishto M. PMID: 26507656; PMCID: PMC4683264.
      View in: PubMed   Mentions: 8     Fields:    Translation:HumansCells
    423. Cytomegalovirus-Specific CD4 T Cells Are Cytolytic and Mediate Vaccine Protection. J Virol. 2016 01 15; 90(2):650-8. Verma S, Weiskopf D, Gupta A, McDonald B, Peters B, Sette A, Benedict CA. PMID: 26491148; PMCID: PMC4702662.
      View in: PubMed   Mentions: 42     Fields:    Translation:AnimalsCells
    424. Automatic Generation of Validated Specific Epitope Sets. J Immunol Res. 2015; 2015:763461. Carrasco Pro S, Sidney J, Paul S, Lindestam Arlehamn C, Weiskopf D, Peters B, Sette A. PMID: 26568965; PMCID: PMC4629045.
      View in: PubMed   Mentions: 57     Fields:    Translation:HumansCells
    425. The common equine class I molecule Eqca-1*00101 (ELA-A3.1) is characterized by narrow peptide binding and T cell epitope repertoires. Immunogenetics. 2015 Nov; 67(11-12):675-89. Bergmann T, Moore C, Sidney J, Miller D, Tallmadge R, Harman RM, Oseroff C, Wriston A, Shabanowitz J, Hunt DF, Osterrieder N, Peters B, Antczak DF, Sette A. PMID: 26399241; PMCID: PMC4783141.
      View in: PubMed   Mentions: 4     Fields:    Translation:HumansAnimalsCells
    426. Apoptotic Epitope-Specific CD8+ T Cells and Interferon Signaling Intersect in Chronic Hepatitis C Virus Infection. J Infect Dis. 2016 Feb 15; 213(4):674-83. Martini H, Citro A, Martire C, D'Ettorre G, Labbadia G, Accapezzato D, Piconese S, De Marzio P, Cavallari EN, Calvo L, Rizzo F, Severa M, Coccia EM, Grazi GL, Di Filippo S, Sidney J, Vullo V, Sette A, Barnaba V. PMID: 26386427.
      View in: PubMed   Mentions: 4     Fields:    Translation:HumansCells
    427. The TB-specific CD4(+) T cell immune repertoire in both cynomolgus and rhesus macaques largely overlap with humans. Tuberculosis (Edinb). 2015 Dec; 95(6):722-735. Mothé BR, Lindestam Arlehamn CS, Dow C, Dillon MBC, Wiseman RW, Bohn P, Karl J, Golden NA, Gilpin T, Foreman TW, Rodgers MA, Mehra S, Scriba TJ, Flynn JL, Kaushal D, O'Connor DH, Sette A. PMID: 26526557; PMCID: PMC4773292.
      View in: PubMed   Mentions: 24     Fields:    Translation:HumansAnimalsCells
    428. A side-by-side comparison of T cell reactivity to fifty-nine Mycobacterium tuberculosis antigens in diverse populations from five continents. Tuberculosis (Edinb). 2015 Dec; 95(6):713-721. Carpenter C, Sidney J, Kolla R, Nayak K, Tomiyama H, Tomiyama C, Padilla OA, Rozot V, Ahamed SF, Ponte C, Rolla V, Antas PR, Chandele A, Kenneth J, Laxmi S, Makgotlho E, Vanini V, Ippolito G, Kazanova AS, Panteleev AV, Hanekom W, Mayanja-Kizza H, Lewinsohn D, Saito M, McElrath MJ, Boom WH, Goletti D, Gilman R, Lyadova IV, Scriba TJ, Kallas EG, Murali-Krishna K, Sette A, Lindestam Arlehamn CS. PMID: 26277695; PMCID: PMC4666753.
      View in: PubMed   Mentions: 17     Fields:    Translation:HumansCells
    429. Dengue virus infection elicits highly polarized CX3CR1+ cytotoxic CD4+ T cells associated with protective immunity. Proc Natl Acad Sci U S A. 2015 Aug 04; 112(31):E4256-63. Weiskopf D, Bangs DJ, Sidney J, Kolla RV, De Silva AD, de Silva AM, Crotty S, Peters B, Sette A. PMID: 26195744; PMCID: PMC4534238.
      View in: PubMed   Mentions: 156     Fields:    Translation:HumansCells
    430. IMMUNODEFICIENCIES. Impairment of immunity to Candida and Mycobacterium in humans with bi-allelic RORC mutations. Science. 2015 Aug 07; 349(6248):606-613. Okada S, Markle JG, Deenick EK, Mele F, Averbuch D, Lagos M, Alzahrani M, Al-Muhsen S, Halwani R, Ma CS, Wong N, Soudais C, Henderson LA, Marzouqa H, Shamma J, Gonzalez M, Martinez-Barricarte R, Okada C, Avery DT, Latorre D, Deswarte C, Jabot-Hanin F, Torrado E, Fountain J, Belkadi A, Itan Y, Boisson B, Migaud M, Arlehamn CSL, Sette A, Breton S, McCluskey J, Rossjohn J, de Villartay JP, Moshous D, Hambleton S, Latour S, Arkwright PD, Picard C, Lantz O, Engelhard D, Kobayashi M, Abel L, Cooper AM, Notarangelo LD, Boisson-Dupuis S, Puel A, Sallusto F, Bustamante J, Tangye SG, Casanova JL. PMID: 26160376; PMCID: PMC4668938.
      View in: PubMed   Mentions: 200     Fields:    Translation:HumansAnimalsCells
    431. An open-source computational and data resource to analyze digital maps of immunopeptidomes. Elife. 2015 Jul 08; 4. Caron E, Espona L, Kowalewski DJ, Schuster H, Ternette N, Alpízar A, Schittenhelm RB, Ramarathinam SH, Lindestam Arlehamn CS, Chiek Koh C, Gillet LC, Rabsteyn A, Navarro P, Kim S, Lam H, Sturm T, Marcilla M, Sette A, Campbell DS, Deutsch EW, Moritz RL, Purcell AW, Rammensee HG, Stevanovic S, Aebersold R. PMID: 26154972; PMCID: PMC4507788.
      View in: PubMed   Mentions: 50     Fields:    
    432. CD8+ T Cells Specific to Apoptosis-Associated Antigens Predict the Response to Tumor Necrosis Factor Inhibitor Therapy in Rheumatoid Arthritis. PLoS One. 2015; 10(6):e0128607. Citro A, Scrivo R, Martini H, Martire C, De Marzio P, Vestri AR, Sidney J, Sette A, Barnaba V, Valesini G. PMID: 26061065; PMCID: PMC4465029.
      View in: PubMed   Mentions: 12     Fields:    Translation:HumansCells
    433. Development and validation of a sample sparing strategy for HLA typing utilizing next generation sequencing. Hum Immunol. 2015 Dec; 76(12):917-22. McKinney DM, Fu Z, Le L, Greenbaum JA, Peters B, Sette A. PMID: 26027778; PMCID: PMC4662932.
      View in: PubMed   Mentions: 8     Fields:    Translation:HumansCells
    434. Analysis of Human RSV Immunity at the Molecular Level: Learning from the Past and Present. PLoS One. 2015; 10(5):e0127108. Vaughan K, Ponomarenko J, Peters B, Sette A. PMID: 26001197; PMCID: PMC4441423.
      View in: PubMed   Mentions:    Fields:    Translation:HumansCells
    435. Human CD8+ T-Cell Responses Against the 4 Dengue Virus Serotypes Are Associated With Distinct Patterns of Protein Targets. J Infect Dis. 2015 Dec 01; 212(11):1743-51. Weiskopf D, Cerpas C, Angelo MA, Bangs DJ, Sidney J, Paul S, Peters B, Sanches FP, Silvera CG, Costa PR, Kallas EG, Gresh L, de Silva AD, Balmaseda A, Harris E, Sette A. PMID: 25980035; PMCID: PMC4633759.
      View in: PubMed   Mentions: 80     Fields:    Translation:HumansCells
    436. A population response analysis approach to assign class II HLA-epitope restrictions. J Immunol. 2015 Jun 15; 194(12):6164-6176. Paul S, Dillon MBC, Arlehamn CSL, Huang H, Davis MM, McKinney DM, Scriba TJ, Sidney J, Peters B, Sette A. PMID: 25948811; PMCID: PMC4458389.
      View in: PubMed   Mentions: 25     Fields:    Translation:HumansCells
    437. Development and validation of a broad scheme for prediction of HLA class II restricted T cell epitopes. J Immunol Methods. 2015 Jul; 422:28-34. Paul S, Lindestam Arlehamn CS, Scriba TJ, Dillon MB, Oseroff C, Hinz D, McKinney DM, Carrasco Pro S, Sidney J, Peters B, Sette A. PMID: 25862607; PMCID: PMC4458426.
      View in: PubMed   Mentions: 91     Fields:    Translation:HumansCells
    438. Fine specificities of natural regulatory T cells after IVIG therapy in patients with Kawasaki disease. Autoimmunity. 2015 May; 48(3):181-8. Burns JC, Touma R, Song Y, Padilla RL, Tremoulet AH, Sidney J, Sette A, Franco A. PMID: 25822882; PMCID: PMC4784966.
      View in: PubMed   Mentions: 13     Fields:    Translation:HumansCells
    439. Human Ebola virus infection results in substantial immune activation. Proc Natl Acad Sci U S A. 2015 Apr 14; 112(15):4719-24. McElroy AK, Akondy RS, Davis CW, Ellebedy AH, Mehta AK, Kraft CS, Lyon GM, Ribner BS, Varkey J, Sidney J, Sette A, Campbell S, Ströher U, Damon I, Nichol ST, Spiropoulou CF, Ahmed R. PMID: 25775592; PMCID: PMC4403189.
      View in: PubMed   Mentions: 175     Fields:    Translation:HumansCells
    440. Automated benchmarking of peptide-MHC class I binding predictions. Bioinformatics. 2015 Jul 01; 31(13):2174-81. Trolle T, Metushi IG, Greenbaum JA, Kim Y, Sidney J, Lund O, Sette A, Peters B, Nielsen M. PMID: 25717196; PMCID: PMC4481849.
      View in: PubMed   Mentions: 62     Fields:    Translation:HumansCells
    441. Vaccination to modulate atherosclerosis. Autoimmunity. 2015 May; 48(3):152-60. Kimura T, Tse K, Sette A, Ley K. PMID: 25683179; PMCID: PMC4429861.
      View in: PubMed   Mentions: 31     Fields:    Translation:HumansAnimalsPHPublic Health
    442. Identification of immunodominant CD4-restricted epitopes co-located with antibody binding sites in individuals vaccinated with ALVAC-HIV and AIDSVAX B/E. PLoS One. 2015; 10(2):e0115582. Ratto-Kim S, de Souza MS, Currier JR, Karasavvas N, Sidney J, Rolland M, Valencia-Micolta A, Madnote S, Sette A, Nitayaphan S, Pitisuttuthum P, Kaewkungwal J, Rerks-Ngarm S, O'Connell R, Michael N, Robb ML, Marovich M, Kim JH. PMID: 25665096; PMCID: PMC4321833.
      View in: PubMed   Mentions: 7     Fields:    Translation:HumansCellsCTClinical Trials
    443. Consequences of periodic α-to-β(3) residue replacement for immunological recognition of peptide epitopes. ACS Chem Biol. 2015 Mar 20; 10(3):844-54. Cheloha RW, Sullivan JA, Wang T, Sand JM, Sidney J, Sette A, Cook ME, Suresh M, Gellman SH. PMID: 25559929; PMCID: PMC4372116.
      View in: PubMed   Mentions: 12     Fields:    Translation:HumansAnimalsCells
    444. Immunological consequences of intragenus conservation of Mycobacterium tuberculosis T-cell epitopes. Proc Natl Acad Sci U S A. 2015 Jan 13; 112(2):E147-55. Lindestam Arlehamn CS, Paul S, Mele F, Huang C, Greenbaum JA, Vita R, Sidney J, Peters B, Sallusto F, Sette A. PMID: 25548174; PMCID: PMC4299226.