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Sarah Allard

Title(s)Assistant Project Scientist, Pediatrics
SchoolVc-health Sciences-schools
Address9500 Gilman Drive #
La Jolla CA 92093
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Microbial context predicts SARS-CoV-2 prevalence in patients and the hospital built environment. medRxiv. 2020 Nov 22. Marotz C, Belda-Ferre P, Ali F, Das P, Huang S, Cantrel K, Jiang L, Martino C, Diner R, Rahman G, McDonald D, Armstrong G, Kodera S, Donato S, Ecklu-Mensah G, Gottel N, Salas Garcia M, Chiang L, Salido RA, Shaffer JP, Bryant M, Sanders K, Humphrey G, Ackermann G, Haiminen N, Beck KL, Kim HC, Carrieri AP, Parida L, Vazquez-Baeza Y, Torriani FJ, Knight R, Gilbert J, Sweeney D, Allard SM. PMID: 33236030.
      View in: PubMed   Mentions:
    2. Introducing the Mangrove Microbiome Initiative: Identifying Microbial Research Priorities and Approaches To Better Understand, Protect, and Rehabilitate Mangrove Ecosystems. mSystems. 2020 Oct 20; 5(5). Allard SM, Costa MT, Bulseco AN, Helfer V, Wilkins LGE, Hassenrück C, Zengler K, Zimmer M, Erazo N, Mazza Rodrigues JL, Duke N, Melo VMM, Vanwonterghem I, Junca H, Makonde HM, Jiménez DJ, Tavares TCL, Fusi M, Daffonchio D, Duarte CM, Peixoto RS, Rosado AS, Gilbert JA, Bowman J. PMID: 33082281.
      View in: PubMed   Mentions:
    3. Impact of high precipitation and temperature events on the distribution of emerging contaminants in surface water in the Mid-Atlantic, United States. Sci Total Environ. 2021 Feb 10; 755(Pt 2):142552. Zhu L, Jiang C, Panthi S, Allard SM, Sapkota AR, Sapkota A. PMID: 33059138.
      View in: PubMed   Mentions:    Fields:    
    4. Longitudinal Assessment of the Dynamics of Escherichia coli, Total Coliforms, Enterococcus spp., and Aeromonas spp. in Alternative Irrigation Water Sources: a CONSERVE Study. Appl Environ Microbiol. 2020 10 01; 86(20). Solaiman S, Allard SM, Callahan MT, Jiang C, Handy E, East C, Haymaker J, Bui A, Craddock H, Murray R, Kulkarni P, Anderson-Coughlin B, Craighead S, Gartley S, Vanore A, Duncan R, Foust D, Taabodi M, Sapkota A, May E, Hashem F, Parveen S, Kniel K, Sharma M, Sapkota AR, Micallef SA. PMID: 32769196.
      View in: PubMed   Mentions:    Fields:    Translation:CellsPHPublic Health
    5. Feasibility of using alternative swabs and storage solutions for paired SARS-CoV-2 detection and microbiome analysis in the hospital environment. Res Sq. 2020 Aug 18. Minich J, Ali F, Marotz C, Belda-Ferre P, Chiang L, Shaffer JP, Carpenter CS, McDonald D, Gilbert J, Allard SM, Allen EE, Knight R, Sweeney DA, Swafford AD. PMID: 32839765.
      View in: PubMed   Mentions:
    6. Feasibility of SARS-CoV-2 virus detection from consumer-grade cotton swabs. medRxiv. 2020 May 18. Minich JJ, Ali F, Marotz C, Belda-Ferre P, Shaffer JP, Carpenter CS, McDonald D, Gilbert JA, Allard SM, Knight R, Sweeney DA, Swafford AD. PMID: 32511552.
      View in: PubMed   Mentions:
    7. Prevalence of Salmonella and Listeria monocytogenes in non-traditional irrigation waters in the Mid-Atlantic United States is affected by water type, season, and recovery method. PLoS One. 2020; 15(3):e0229365. Sharma M, Handy ET, East CL, Kim S, Jiang C, Callahan MT, Allard SM, Micallef S, Craighead S, Anderson-Coughlin B, Gartley S, Vanore A, Kniel KE, Haymaker J, Duncan R, Foust D, White C, Taabodi M, Hashem F, Parveen S, May E, Bui A, Craddock H, Kulkarni P, Murray RT, Sapkota AR. PMID: 32182252.
      View in: PubMed   Mentions: 1     Fields:    Translation:CellsPHPublic Health
    8. Rain induces temporary shifts in epiphytic bacterial communities of cucumber and tomato fruit. Sci Rep. 2020 02 04; 10(1):1765. Allard SM, Ottesen AR, Micallef SA. PMID: 32020033.
      View in: PubMed   Mentions:    Fields:    Translation:AnimalsCellsPHPublic Health
    9. Metagenomic analysis of bacterial and viral assemblages from a freshwater creek and irrigated field reveals temporal and spatial dynamics. Sci Total Environ. 2020 Mar 01; 706:135395. Chopyk J, Nasko DJ, Allard S, Callahan MT, Bui A, Ferelli AMC, Chattopadhyay S, Mongodin EF, Pop M, Micallef SA, Sapkota AR. PMID: 31846873.
      View in: PubMed   Mentions:    Fields:    Translation:CellsPHPublic Health
    10. Comparative metagenomic analysis of microbial taxonomic and functional variations in untreated surface and reclaimed waters used in irrigation applications. Water Res. 2020 Feb 01; 169:115250. Chopyk J, Nasko DJ, Allard S, Bui A, Treangen T, Pop M, Mongodin EF, Sapkota AR. PMID: 31726395.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansPHPublic Health
    11. Pharmaceuticals, herbicides, and disinfectants in agricultural water sources. Environ Res. 2019 07; 174:1-8. Panthi S, Sapkota AR, Raspanti G, Allard SM, Bui A, Craddock HA, Murray R, Zhu L, East C, Handy E, Callahan MT, Haymaker J, Kulkarni P, Anderson B, Craighead S, Gartley S, Vanore A, Betancourt WQ, Duncan R, Foust D, Sharma M, Micallef SA, Gerba C, Parveen S, Hashem F, May E, Kniel K, Pop M, Ravishankar S, Sapkota A. PMID: 31015109.
      View in: PubMed   Mentions: 1     Fields:    Translation:PHPublic Health
    12. Quenching by sodium thiosulfate does not influence 16S rRNA gene sequencing profiles of reclaimed water from three sites in the Mid-Atlantic, United States. Environ Res. 2019 05; 172:296-300. Allard SM, Solaiman S, Callahan MT, Bui A, Craddock H, Haymaker J, Foust D, Duncan R, Smyth E, Mongodin EF, Hashem F, May E, Micallef SA, Sapkota AR. PMID: 30822563.
      View in: PubMed   Mentions:    Fields:    Translation:PHPublic Health
    13. Prevalence of Shiga-toxigenic and atypical enteropathogenic Escherichia coli in untreated surface water and reclaimed water in the Mid-Atlantic U.S. Environ Res. 2019 05; 172:630-636. Haymaker J, Sharma M, Parveen S, Hashem F, May EB, Handy ET, White C, East C, Bradshaw R, Micallef SA, Callahan MT, Allard S, Anderson B, Craighead S, Gartley S, Vanore A, Kniel KE, Solaiman S, Bui A, Murray R, Craddock HA, Kulkarni P, Foust D, Duncan R, Taabodi M, Sapkota AR. PMID: 30878734.
      View in: PubMed   Mentions: 4     Fields:    Translation:CellsPHPublic Health
    14. Creek to Table: Tracking fecal indicator bacteria, bacterial pathogens, and total bacterial communities from irrigation water to kale and radish crops. Sci Total Environ. 2019 May 20; 666:461-471. Allard SM, Callahan MT, Bui A, Ferelli AMC, Chopyk J, Chattopadhyay S, Mongodin EF, Micallef SA, Sapkota AR. PMID: 30802661.
      View in: PubMed   Mentions: 2     Fields:    Translation:AnimalsCellsPHPublic Health
    15. Current progress and future opportunities in applications of bioinformatics for biodefense and pathogen detection: report from the Winter Mid-Atlantic Microbiome Meet-up, College Park, MD, January 10, 2018. Microbiome. 2018 11 05; 6(1):197. Meisel JS, Nasko DJ, Brubach B, Cepeda-Espinoza V, Chopyk J, Corrada-Bravo H, Fedarko M, Ghurye J, Javkar K, Olson ND, Shah N, Allard SM, Bazinet AL, Bergman NH, Brown A, Caporaso JG, Conlan S, DiRuggiero J, Forry SP, Hasan NA, Kralj J, Luethy PM, Milton DK, Ondov BD, Preheim S, Ratnayake S, Rogers SM, Rosovitz MJ, Sakowski EG, Schliebs NO, Sommer DD, Ternus KL, Uritskiy G, Zhang SX, Pop M, Treangen TJ. PMID: 30396371.
      View in: PubMed   Mentions: 2     Fields:    Translation:Humans
    16. Agricultural Freshwater Pond Supports Diverse and Dynamic Bacterial and Viral Populations. Front Microbiol. 2018; 9:792. Chopyk J, Allard S, Nasko DJ, Bui A, Mongodin EF, Sapkota AR. PMID: 29740420.
      View in: PubMed   Mentions:
    17. Solanum lycopersicum (tomato) hosts robust phyllosphere and rhizosphere bacterial communities when grown in soil amended with various organic and synthetic fertilizers. Sci Total Environ. 2016 Dec 15; 573:555-563. Allard SM, Walsh CS, Wallis AE, Ottesen AR, Brown EW, Micallef SA. PMID: 27580466.
      View in: PubMed   Mentions: 4     Fields:    Translation:AnimalsPHPublic Health
    18. Ecological prevalence, genetic diversity, and epidemiological aspects of Salmonella isolated from tomato agricultural regions of the Virginia Eastern Shore. Front Microbiol. 2015; 6:415. Bell RL, Zheng J, Burrows E, Allard S, Wang CY, Keys CE, Melka DC, Strain E, Luo Y, Allard MW, Rideout S, Brown EW. PMID: 25999938.
      View in: PubMed   Mentions:
    19. In situ evaluation of Paenibacillus alvei in reducing carriage of Salmonella enterica serovar Newport on whole tomato plants. Appl Environ Microbiol. 2014 Jul; 80(13):3842-9. Allard S, Enurah A, Strain E, Millner P, Rideout SL, Brown EW, Zheng J. PMID: 24747888.
      View in: PubMed   Mentions: 15     Fields:    Translation:AnimalsCellsPHPublic Health
    20. Draft Genome Sequences of Paenibacillus alvei A6-6i and TS-15. Genome Announc. 2013 Aug 29; 1(5). Luo Y, Wang C, Allard S, Strain E, Allard MW, Brown EW, Zheng J. PMID: 23990585.
      View in: PubMed   Mentions:
    21. Baseline survey of the anatomical microbial ecology of an important food plant: Solanum lycopersicum (tomato). BMC Microbiol. 2013 May 24; 13:114. Ottesen AR, González Peña A, White JR, Pettengill JB, Li C, Allard S, Rideout S, Allard M, Hill T, Evans P, Strain E, Musser S, Knight R, Brown E. PMID: 23705801.
      View in: PubMed   Mentions: 47     Fields:    Translation:AnimalsCells
    22. Colonization and internalization of Salmonella enterica in tomato plants. Appl Environ Microbiol. 2013 Apr; 79(8):2494-502. Zheng J, Allard S, Reynolds S, Millner P, Arce G, Blodgett RJ, Brown EW. PMID: 23377940.
      View in: PubMed   Mentions: 20     Fields:    Translation:HumansAnimalsCellsPHPublic Health
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