Sergey Kryazhimskiy

TitleAssistant Researcher
InstitutionUniversity of California San Diego
DepartmentEcology, Behavior, and Evolution
Address9500 Gilman Drive #0116
La Jolla CA 92093
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    1. Jerison ER, Kryazhimskiy S, Mitchell JK, Bloom JS, Kruglyak L, Desai MM. Genetic variation in adaptability and pleiotropy in budding yeast. Elife. 2017 Aug 17; 6. PMID: 28826486.
      View in: PubMed
    2. Neverov AD, Kryazhimskiy S, Plotkin JB, Bazykin GA. Coordinated Evolution of Influenza A Surface Proteins. PLoS Genet. 2015 Aug; 11(8):e1005404. PMID: 26247472; PMCID: PMC4527594.
    3. Baym M, Kryazhimskiy S, Lieberman TD, Chung H, Desai MM, Kishony R. Inexpensive multiplexed library preparation for megabase-sized genomes. PLoS One. 2015; 10(5):e0128036. PMID: 26000737; PMCID: PMC4441430.
    4. Kryazhimskiy S, Rice DP, Jerison ER, Desai MM. Microbial evolution. Global epistasis makes adaptation predictable despite sequence-level stochasticity. Science. 2014 Jun 27; 344(6191):1519-1522. PMID: 24970088; PMCID: PMC4314286.
    5. Pennings PS, Kryazhimskiy S, Wakeley J. Loss and recovery of genetic diversity in adapting populations of HIV. PLoS Genet. 2014 Jan; 10(1):e1004000. PMID: 24465214; PMCID: PMC3900388.
    6. Kryazhimskiy S, Desai MM. Refining a key metabolic innovation in Escherichia coli. Proc Natl Acad Sci U S A. 2014 Feb 11; 111(6):2056-7. PMID: 24459186; PMCID: PMC3926052.
    7. Feder AF, Kryazhimskiy S, Plotkin JB. Identifying signatures of selection in genetic time series. Genetics. 2014 Feb; 196(2):509-22. PMID: 24318534; PMCID: PMC3914623.
    8. Perron GG, Kryazhimskiy S, Rice DP, Buckling A. Multidrug therapy and evolution of antibiotic resistance: when order matters. Appl Environ Microbiol. 2012 Sep; 78(17):6137-42. PMID: 22729549; PMCID: PMC3416609.
    9. Kryazhimskiy S, Rice DP, Desai MM. Population subdivision and adaptation in asexual populations of Saccharomyces cerevisiae. Evolution. 2012 Jun; 66(6):1931-41. PMID: 22671557.
      View in: PubMed
    10. de Silva S, Ranjeewa AD, Kryazhimskiy S. The dynamics of social networks among female Asian elephants. BMC Ecol. 2011 Jul 27; 11:17. PMID: 21794147; PMCID: PMC3199741.
    11. Kryazhimskiy S, Draghi JA, Plotkin JB. Evolution. In evolution, the sum is less than its parts. Science. 2011 Jun 03; 332(6034):1160-1. PMID: 21636764.
      View in: PubMed
    12. Kryazhimskiy S, Dushoff J, Bazykin GA, Plotkin JB. Prevalence of epistasis in the evolution of influenza A surface proteins. PLoS Genet. 2011 Feb; 7(2):e1001301. PMID: 21390205; PMCID: PMC3040651.
    13. Vishnoi A, Kryazhimskiy S, Bazykin GA, Hannenhalli S, Plotkin JB. Young proteins experience more variable selection pressures than old proteins. Genome Res. 2010 Nov; 20(11):1574-81. PMID: 20921233; PMCID: PMC2963820.
    14. Kryazhimskiy S, Tkacik G, Plotkin JB. The dynamics of adaptation on correlated fitness landscapes. Proc Natl Acad Sci U S A. 2009 Nov 03; 106(44):18638-43. PMID: 19858497.
      View in: PubMed
    15. Roy S, Vandenberghe LH, Kryazhimskiy S, Grant R, Calcedo R, Yuan X, Keough M, Sandhu A, Wang Q, Medina-Jaszek CA, Plotkin JB, Wilson JM. Isolation and characterization of adenoviruses persistently shed from the gastrointestinal tract of non-human primates. PLoS Pathog. 2009 Jul; 5(7):e1000503. PMID: 19578438; PMCID: PMC2698151.
    16. Kryazhimskiy S, Plotkin JB. The population genetics of dN/dS. PLoS Genet. 2008 Dec; 4(12):e1000304. PMID: 19081788; PMCID: PMC2596312.
    17. Kryazhimskiy S, Bazykin GA, Plotkin JB, Plotkin J, Dushoff J. Directionality in the evolution of influenza A haemagglutinin. Proc Biol Sci. 2008 Nov 07; 275(1650):2455-64. PMID: 18647721; PMCID: PMC2603193.
    18. Kryazhimskiy S, Bazykin GA, Dushoff J. Natural selection for nucleotide usage at synonymous and nonsynonymous sites in influenza A virus genes. J Virol. 2008 May; 82(10):4938-45. PMID: 18321967; PMCID: PMC2346729.
    19. Kryazhimskiy S, Dieckmann U, Levin SA, Dushoff J. On state-space reduction in multi-strain pathogen models, with an application to antigenic drift in influenza A. PLoS Comput Biol. 2007 Aug; 3(8):e159. PMID: 17708677; PMCID: PMC1949840.
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