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The multiple scales of astrocytic functional units. Nat Neurosci. 2026 Jun; 29(6):1279-1292.
Oliveira JF, Agarwal A, Beckervordersandforth R, Curreli S, Denizot A, Dulla C, Enger R, Goda Y, Goshen I, Holt MG, Nimmerjahn A, Perea G, Scimemi A, Henneberger C. PMID: 42204000.
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PubMed Mentions: Fields:
Translation:
HumansAnimalsCells
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Synthetic multicolor antigen-stabilizable nanobody platform for intersectional labeling and functional imaging. Nat Methods. 2026 May; 23(5):972-985.
Barykina NV, Carey EM, Oliinyk OS, Mendonça-Gomes JM, de Oliveira S, Nimmerjahn A, Verkhusha VV. PMID: 42020773.
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PubMed Mentions: Fields:
Translation:
HumansAnimals
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AQuA2-Cloud: a web platform for fluorescence bioimaging activity analysis. bioRxiv. 2026 Mar 10.
Bright M, Mi X, Duarte D, Carey E, Lyu B, Wang Y, Nimmerjahn A, Yu G. PMID: 41959064; PMCID: PMC13060981.
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PubMed Mentions:
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Astrocyte Regulation of Spinal Circuit Function. J Neurochem. 2026 Feb; 170(2):e70366.
Duff MK, Li MJ, Nimmerjahn A. PMID: 41612623; PMCID: PMC12856100.
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Translation:
HumansAnimalsCells
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Modeling predicts a biochemical feedback mechanism underlying astrocyte calcium refractory periods. bioRxiv. 2026 Jan 13.
Peng JC, Merten K, Duff MK, Nelson N, Wang Y, Duarte D, Wang Y, Tian L, Nimmerjahn A, Yu G. PMID: 41648308; PMCID: PMC12871289.
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PubMed Mentions:
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Synthetic multicolor antigen-stabilizable nanobody platform for intersectional labelling and functional imaging. bioRxiv. 2025 Oct 27.
Barykina NV, Carey EM, Oliinyk OS, Mendonça-Gomes JM, de Oliveira S, Nimmerjahn A, Verkhusha VV. PMID: 41278670; PMCID: PMC12636615.
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PubMed Mentions:
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Fast, accurate, and versatile data analysis platform for the quantification of molecular spatiotemporal signals. Cell. 2025 May 15; 188(10):2794-2809.e21.
Mi X, Chen AB, Duarte D, Carey E, Taylor CR, Braaker PN, Bright M, Almeida RG, Lim JX, Ruetten VMS, Wang Y, Wang M, Zhang W, Zheng W, Reitman ME, Huang Y, Wang X, Li L, Deng H, Shi SH, Poskanzer KE, Lyons DA, Nimmerjahn A, Ahrens MB, Yu G. PMID: 40203826; PMCID: PMC12708059.
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PubMed Mentions:
5 Fields:
Translation:
HumansAnimalsCells
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Destabilized near-infrared fluorescent nanobodies enable background-free targeting of GFP-based biosensors for imaging and manipulation. Nat Commun. 2024 09 06; 15(1):7788.
Barykina NV, Carey EM, Oliinyk OS, Nimmerjahn A, Verkhusha VV. PMID: 39242569; PMCID: PMC11379940.
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PubMed Mentions:
2 Fields:
Translation:
HumansAnimalsCells
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Brainstem Dbh+ neurons control allergen-induced airway hyperreactivity. Nature. 2024 07; 631(8021):601-609.
Su Y, Xu J, Zhu Z, Chin J, Xu L, Yu H, Nudell V, Dash B, Moya EA, Ye L, Nimmerjahn A, Sun X. PMID: 38987587; PMCID: PMC11254774.
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PubMed Mentions:
32 Fields:
Translation:
AnimalsCells
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Fast, Accurate, and Versatile Data Analysis Platform for the Quantification of Molecular Spatiotemporal Signals. bioRxiv. 2024 Jun 01.
Mi X, Chen AB, Duarte D, Carey E, Taylor CR, Braaker PN, Bright M, Almeida RG, Lim JX, Ruetten VMS, Zheng W, Wang M, Reitman ME, Wang Y, Poskanzer KE, Lyons DA, Nimmerjahn A, Ahrens MB, Yu G. PMID: 38766026; PMCID: PMC11100599.
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PubMed Mentions:
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Ultraflexible electrodes for recording neural activity in the mouse spinal cord during motor behavior. Cell Rep. 2024 05 28; 43(5):114199.
Wu Y, Temple BA, Sevilla N, Zhang J, Zhu H, Zolotavin P, Jin Y, Duarte D, Sanders E, Azim E, Nimmerjahn A, Pfaff SL, Luan L, Xie C. PMID: 38728138; PMCID: PMC11233142.
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PubMed Mentions:
6 Fields:
Translation:
AnimalsCells
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Brainstem Dbh+ Neurons Control Chronic Allergen-Induced Airway Hyperreactivity. bioRxiv. 2024 Feb 14.
Su Y, Xu J, Zhu Z, Chin J, Xu L, Yu H, Nudell V, Dash B, Moya EA, Ye L, Nimmerjahn A, Sun X. PMID: 36778350; PMCID: PMC9915738.
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PubMed Mentions:
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An in vivo neuroimmune organoid model to study human microglia phenotypes. Cell. 2023 05 11; 186(10):2111-2126.e20.
Schafer ST, Mansour AA, Schlachetzki JCM, Pena M, Ghassemzadeh S, Mitchell L, Mar A, Quang D, Stumpf S, Ortiz IS, Lana AJ, Baek C, Zaghal R, Glass CK, Nimmerjahn A, Gage FH. PMID: 37172564; PMCID: PMC10284271.
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PubMed Mentions:
123 Fields:
Translation:
HumansCells
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Multiplex translaminar imaging in the spinal cord of behaving mice. Nat Commun. 2023 03 21; 14(1):1427.
Shekhtmeyster P, Carey EM, Duarte D, Ngo A, Gao G, Nelson NA, Clark CL, Nimmerjahn A. PMID: 36944637; PMCID: PMC10030868.
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PubMed Mentions:
9 Fields:
Translation:
AnimalsCells
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Trans-segmental imaging in the spinal cord of behaving mice. Nat Biotechnol. 2023 12; 41(12):1729-1733.
Shekhtmeyster P, Duarte D, Carey EM, Ngo A, Gao G, Olmstead JA, Nelson NA, Nimmerjahn A. PMID: 36879007; PMCID: PMC11229418.
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PubMed Mentions:
10 Fields:
Translation:
Animals
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Electro-optical mechanically flexible coaxial microprobes for minimally invasive interfacing with intrinsic neural circuits. Nat Commun. 2022 06 07; 13(1):3286.
Ward S, Riley C, Carey EM, Nguyen J, Esener S, Nimmerjahn A, Sirbuly DJ. PMID: 35672294; PMCID: PMC9174211.
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PubMed Mentions:
2 Fields:
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Astrocyte regulation of neural circuit function and animal behavior. Glia. 2022 08; 70(8):1453-1454.
Nimmerjahn A, Hirrlinger J. PMID: 35611860.
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PubMed Mentions:
3 Fields:
Translation:
AnimalsCells
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Single-domain near-infrared protein provides a scaffold for antigen-dependent fluorescent nanobodies. Nat Methods. 2022 06; 19(6):740-750.
Oliinyk OS, Baloban M, Clark CL, Carey E, Pletnev S, Nimmerjahn A, Verkhusha VV. PMID: 35606446; PMCID: PMC9189029.
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PubMed Mentions:
30 Fields:
Translation:
Animals
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Neurophotonic tools for microscopic measurements and manipulation: status report. Neurophotonics. 2022 Jan; 9(Suppl 1):013001.
Abdelfattah AS, Ahuja S, Akkin T, Allu SR, Brake J, Boas DA, Buckley EM, Campbell RE, Chen AI, Cheng X, Cižmár T, Costantini I, De Vittorio M, Devor A, Doran PR, El Khatib M, Emiliani V, Fomin-Thunemann N, Fainman Y, Fernandez-Alfonso T, Ferri CGL, Gilad A, Han X, Harris A, Hillman EMC, Hochgeschwender U, Holt MG, Ji N, Kiliç K, Lake EMR, Li L, Li T, Mächler P, Miller EW, Mesquita RC, Nadella KMNS, Nägerl UV, Nasu Y, Nimmerjahn A, Ondrácková P, Pavone FS, Perez Campos C, Peterka DS, Pisano F, Pisanello F, Puppo F, Sabatini BL, Sadegh S, Sakadzic S, Shoham S, Shroff SN, Silver RA, Sims RR, Smith SL, Srinivasan VJ, Thunemann M, Tian L, Tian L, Troxler T, Valera A, Vaziri A, Vinogradov SA, Vitale F, Wang LV, Uhlírová H, Xu C, Yang C, Yang MH, Yellen G, Yizhar O, Zhao Y. PMID: 35493335; PMCID: PMC9047450.
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PubMed Mentions:
25
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A perspective on astrocyte regulation of neural circuit function and animal behavior. Glia. 2022 08; 70(8):1554-1580.
Hirrlinger J, Nimmerjahn A. PMID: 35297525; PMCID: PMC9291267.
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PubMed Mentions:
26 Fields:
Translation:
AnimalsCells
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Microglia use TAM receptors to detect and engulf amyloid β plaques. Nat Immunol. 2021 05; 22(5):586-594.
Huang Y, Happonen KE, Burrola PG, O'Connor C, Hah N, Huang L, Nimmerjahn A, Lemke G. PMID: 33859405; PMCID: PMC8102389.
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PubMed Mentions:
253 Fields:
Translation:
HumansAnimalsCells
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Neural Stem Cell Grafts Form Extensive Synaptic Networks that Integrate with Host Circuits after Spinal Cord Injury. Cell Stem Cell. 2020 09 03; 27(3):430-440.e5.
Ceto S, Sekiguchi KJ, Takashima Y, Nimmerjahn A, Tuszynski MH. PMID: 32758426; PMCID: PMC7484050.
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PubMed Mentions:
91 Fields:
Translation:
HumansCells
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Monitoring neuronal health. Science. 2020 01 31; 367(6477):510-511.
Nimmerjahn A. PMID: 32001643; PMCID: PMC9291239.
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PubMed Mentions:
2 Fields:
Translation:
Cells
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Imaging neuromodulators with high spatiotemporal resolution using genetically encoded indicators. Nat Protoc. 2019 12; 14(12):3471-3505.
Patriarchi T, Cho JR, Merten K, Marley A, Broussard GJ, Liang R, Williams J, Nimmerjahn A, von Zastrow M, Gradinaru V, Tian L. PMID: 31732722.
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PubMed Mentions:
30 Fields:
Translation:
HumansAnimalsCells
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Editorial for "In vivo spinal cord imaging in health, injury and disease". Exp Neurol. 2019 12; 322:113038.
Zheng B, Nimmerjahn A. PMID: 31698157.
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PubMed Mentions: Fields:
Translation:
Animals
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Imaging spinal cord activity in behaving animals. Exp Neurol. 2019 10; 320:112974.
Nelson NA, Wang X, Cook D, Carey EM, Nimmerjahn A. PMID: 31175843; PMCID: PMC7840222.
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PubMed Mentions:
21 Fields:
Translation:
Animals
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Ultrafast neuronal imaging of dopamine dynamics with designed genetically encoded sensors. Science. 2018 06 29; 360(6396).
Patriarchi T, Cho JR, Merten K, Howe MW, Marley A, Xiong WH, Folk RW, Broussard GJ, Liang R, Jang MJ, Zhong H, Dombeck D, von Zastrow M, Nimmerjahn A, Gradinaru V, Williams JT, Tian L. PMID: 29853555; PMCID: PMC6287765.
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PubMed Mentions:
535 Fields:
Translation:
HumansAnimalsCells
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Phosphatidylserine Exposure Controls Viral Innate Immune Responses by Microglia. Neuron. 2017 Feb 08; 93(3):574-586.e8.
Tufail Y, Cook D, Fourgeaud L, Powers CJ, Merten K, Clark CL, Hoffman E, Ngo A, Sekiguchi KJ, O'Shea CC, Lemke G, Nimmerjahn A. PMID: 28111081; PMCID: PMC5600182.
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PubMed Mentions:
55 Fields:
Translation:
AnimalsCells
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Imaging large-scale cellular activity in spinal cord of freely behaving mice. Nat Commun. 2016 04 28; 7:11450.
Sekiguchi KJ, Shekhtmeyster P, Merten K, Arena A, Cook D, Hoffman E, Ngo A, Nimmerjahn A. PMID: 27121084; PMCID: PMC4853475.
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PubMed Mentions:
71 Fields:
Translation:
AnimalsCells
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TAM receptors regulate multiple features of microglial physiology. Nature. 2016 Apr 14; 532(7598):240-244.
Fourgeaud L, Través PG, Tufail Y, Leal-Bailey H, Lew ED, Burrola PG, Callaway P, Zagórska A, Rothlin CV, Nimmerjahn A, Lemke G. PMID: 27049947; PMCID: PMC5358512.
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PubMed Mentions:
350 Fields:
Translation:
AnimalsCells
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Large-scale recording of astrocyte activity. Curr Opin Neurobiol. 2015 Jun; 32:95-106.
Nimmerjahn A, Bergles DE. PMID: 25665733; PMCID: PMC4447573.
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PubMed Mentions:
39 Fields:
Translation:
HumansAnimalsCells
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Stepwise recruitment of transcellular and paracellular pathways underlies blood-brain barrier breakdown in stroke. Neuron. 2014 May 07; 82(3):603-17.
Knowland D, Arac A, Sekiguchi KJ, Hsu M, Lutz SE, Perrino J, Steinberg GK, Barres BA, Nimmerjahn A, Agalliu D. PMID: 24746419; PMCID: PMC4016169.
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PubMed Mentions:
382 Fields:
Translation:
AnimalsCells
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The challenge of connecting the dots in the B.R.A.I.N. Neuron. 2013 Oct 16; 80(2):270-4.
Devor A, Bandettini PA, Boas DA, Bower JM, Buxton RB, Cohen LB, Dale AM, Einevoll GT, Fox PT, Franceschini MA, Friston KJ, Fujimoto JG, Geyer MA, Greenberg JH, Halgren E, Hämäläinen MS, Helmchen F, Hyman BT, Jasanoff A, Jernigan TL, Judd LL, Kim SG, Kleinfeld D, Kopell NJ, Kutas M, Kwong KK, Larkum ME, Lo EH, Magistretti PJ, Mandeville JB, Masliah E, Mitra PP, Mobley WC, Moskowitz MA, Nimmerjahn A, Reynolds JH, Rosen BR, Salzberg BM, Schaffer CB, Silva GA, So PT, Spitzer NC, Tootell RB, Van Essen DC, Vanduffel W, Vinogradov SA, Wald LL, Wang LV, Weber B, Yodh AG. PMID: 24139032; PMCID: PMC3864648.
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PubMed Mentions:
36 Fields:
Translation:
HumansAnimals
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Optical window preparation for two-photon imaging of microglia in mice. Cold Spring Harb Protoc. 2012 May 01; 2012(5).
Nimmerjahn A. PMID: 22550298.
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PubMed Mentions:
9 Fields:
Translation:
AnimalsCells
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Two-photon imaging of microglia in the mouse cortex in vivo. Cold Spring Harb Protoc. 2012 May 01; 2012(5).
Nimmerjahn A. PMID: 22550299.
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PubMed Mentions:
26 Fields:
Translation:
AnimalsCells
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Surgical implantation of a head plate in mice in preparation for in vivo two-photon imaging of microglia. Cold Spring Harb Protoc. 2012 May 01; 2012(5).
Nimmerjahn A. PMID: 22550297.
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PubMed Mentions:
2 Fields:
Translation:
AnimalsCells
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In vivo labeling of cortical astrocytes with sulforhodamine 101 (SR101). Cold Spring Harb Protoc. 2012 Mar 01; 2012(3):326-34.
Nimmerjahn A, Helmchen F. PMID: 22383644.
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PubMed Mentions:
28 Fields:
Translation:
AnimalsCells
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Functional imaging in freely moving animals. Curr Opin Neurobiol. 2012 Feb; 22(1):45-53.
Kerr JN, Nimmerjahn A. PMID: 22237048.
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PubMed Mentions:
32 Fields:
Translation:
Animals
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The role of microglia in the healthy brain. J Neurosci. 2011 Nov 09; 31(45):16064-9.
Tremblay MÈ, Stevens B, Sierra A, Wake H, Bessis A, Nimmerjahn A. PMID: 22072657; PMCID: PMC6633221.
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PubMed Mentions:
532 Fields:
Translation:
HumansAnimalsCells
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Miniaturized integration of a fluorescence microscope. Nat Methods. 2011 Sep 11; 8(10):871-8.
Ghosh KK, Burns LD, Cocker ED, Nimmerjahn A, Ziv Y, Gamal AE, Schnitzer MJ. PMID: 21909102; PMCID: PMC3810311.
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PubMed Mentions:
544 Fields:
Translation:
AnimalsCells
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Automated analysis of cellular signals from large-scale calcium imaging data. Neuron. 2009 Sep 24; 63(6):747-60.
Mukamel EA, Nimmerjahn A, Schnitzer MJ. PMID: 19778505; PMCID: PMC3282191.
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PubMed Mentions:
375 Fields:
Translation:
HumansAnimalsCells
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Motor behavior activates Bergmann glial networks. Neuron. 2009 May 14; 62(3):400-12.
Nimmerjahn A, Mukamel EA, Schnitzer MJ. PMID: 19447095; PMCID: PMC2820366.
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PubMed Mentions:
165 Fields:
Translation:
AnimalsCells
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Astrocytes going live: advances and challenges. J Physiol. 2009 Apr 15; 587(Pt 8):1639-47.
Nimmerjahn A. PMID: 19204050; PMCID: PMC2683952.
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PubMed Mentions:
46 Fields:
Translation:
HumansAnimalsCells
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High-speed, miniaturized fluorescence microscopy in freely moving mice. Nat Methods. 2008 Nov; 5(11):935-8.
Flusberg BA, Nimmerjahn A, Cocker ED, Mukamel EA, Barretto RP, Ko TH, Burns LD, Jung JC, Schnitzer MJ. PMID: 18836457; PMCID: PMC2828344.
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PubMed Mentions:
167 Fields:
Translation:
Animals
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In vivo calcium imaging of circuit activity in cerebellar cortex. J Neurophysiol. 2005 Aug; 94(2):1636-44.
Sullivan MR, Nimmerjahn A, Sarkisov DV, Helmchen F, Wang SS. PMID: 16079125.
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PubMed Mentions:
57 Fields:
Translation:
AnimalsCells
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Resting microglial cells are highly dynamic surveillants of brain parenchyma in vivo. Science. 2005 May 27; 308(5726):1314-8.
Nimmerjahn A, Kirchhoff F, Helmchen F. PMID: 15831717.
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PubMed Mentions:
2948 Fields:
Translation:
AnimalsCells
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Lentivirus-based genetic manipulations of cortical neurons and their optical and electrophysiological monitoring in vivo. Proc Natl Acad Sci U S A. 2004 Dec 28; 101(52):18206-11.
Dittgen T, Nimmerjahn A, Komai S, Licznerski P, Waters J, Margrie TW, Helmchen F, Denk W, Brecht M, Osten P. PMID: 15608064; PMCID: PMC539748.
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PubMed Mentions:
255 Fields:
Translation:
AnimalsCells
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Miniaturized two-photon microscope based on a flexible coherent fiber bundle and a gradient-index lens objective. Opt Lett. 2004 Nov 01; 29(21):2521-3.
Göbel W, Kerr JN, Nimmerjahn A, Helmchen F. PMID: 15584281.
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PubMed Mentions:
73 Fields:
Translation:
Animals
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Sulforhodamine 101 as a specific marker of astroglia in the neocortex in vivo. Nat Methods. 2004 Oct; 1(1):31-7.
Nimmerjahn A, Kirchhoff F, Kerr JN, Helmchen F. PMID: 15782150.
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PubMed Mentions:
425 Fields:
Translation:
AnimalsCells
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Distortion-free delivery of nanojoule femtosecond pulses from a Ti:sapphire laser through a hollow-core photonic crystal fiber. Opt Lett. 2004 Jun 01; 29(11):1285-7.
Göbel W, Nimmerjahn A, Helmchen F. PMID: 15209273.
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PubMed Mentions:
19 Fields:
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Sindbis vector SINrep(nsP2S726): a tool for rapid heterologous expression with attenuated cytotoxicity in neurons. J Neurosci Methods. 2004 Feb 15; 133(1-2):81-90.
Kim J, Dittgen T, Nimmerjahn A, Waters J, Pawlak V, Helmchen F, Schlesinger S, Seeburg PH, Osten P. PMID: 14757348.
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PubMed Mentions:
34 Fields:
Translation:
AnimalsCells