Axel Nimmerjahn

Title(s)Associate Adjunct Professor, Neurobiology
SchoolVc-academic Affairs
Address9500 Gilman Drive #
La Jolla CA 92093
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Brainstem Dbh+ Neurons Control Chronic Allergen-Induced Airway Hyperreactivity. bioRxiv. 2024 Feb 14. Su Y, Xu J, Zhu Z, Chin J, Xu L, Yu H, Nudell V, Dash B, Moya EA, Ye L, Nimmerjahn A, Sun X. PMID: 36778350; PMCID: PMC9915738.
      View in: PubMed   Mentions:
    2. An in vivo neuroimmune organoid model to study human microglia phenotypes. Cell. 2023 05 11; 186(10):2111-2126.e20. Schafer ST, Mansour AA, Schlachetzki JCM, Pena M, Ghassemzadeh S, Mitchell L, Mar A, Quang D, Stumpf S, Ortiz IS, Lana AJ, Baek C, Zaghal R, Glass CK, Nimmerjahn A, Gage FH. PMID: 37172564; PMCID: PMC10284271.
      View in: PubMed   Mentions: 22     Fields:    Translation:HumansCells
    3. Multiplex translaminar imaging in the spinal cord of behaving mice. Nat Commun. 2023 03 21; 14(1):1427. Shekhtmeyster P, Carey EM, Duarte D, Ngo A, Gao G, Nelson NA, Clark CL, Nimmerjahn A. PMID: 36944637; PMCID: PMC10030868.
      View in: PubMed   Mentions: 1     Fields:    Translation:AnimalsCells
    4. Trans-segmental imaging in the spinal cord of behaving mice. Nat Biotechnol. 2023 Dec; 41(12):1729-1733. Shekhtmeyster P, Duarte D, Carey EM, Ngo A, Gao G, Olmstead JA, Nelson NA, Nimmerjahn A. PMID: 36879007.
      View in: PubMed   Mentions: 2     Fields:    Translation:Animals
    5. Electro-optical mechanically flexible coaxial microprobes for minimally invasive interfacing with intrinsic neural circuits. Nat Commun. 2022 06 07; 13(1):3286. Ward S, Riley C, Carey EM, Nguyen J, Esener S, Nimmerjahn A, Sirbuly DJ. PMID: 35672294; PMCID: PMC9174211.
      View in: PubMed   Mentions: 2     Fields:    
    6. Astrocyte regulation of neural circuit function and animal behavior. Glia. 2022 08; 70(8):1453-1454. Nimmerjahn A, Hirrlinger J. PMID: 35611860.
      View in: PubMed   Mentions: 1     Fields:    Translation:AnimalsCells
    7. Single-domain near-infrared protein provides a scaffold for antigen-dependent fluorescent nanobodies. Nat Methods. 2022 06; 19(6):740-750. Oliinyk OS, Baloban M, Clark CL, Carey E, Pletnev S, Nimmerjahn A, Verkhusha VV. PMID: 35606446; PMCID: PMC9189029.
      View in: PubMed   Mentions: 11     Fields:    Translation:Animals
    8. Neurophotonic tools for microscopic measurements and manipulation: status report. Neurophotonics. 2022 Jan; 9(Suppl 1):013001. Abdelfattah AS, Ahuja S, Akkin T, Allu SR, Brake J, Boas DA, Buckley EM, Campbell RE, Chen AI, Cheng X, Cižmár T, Costantini I, De Vittorio M, Devor A, Doran PR, El Khatib M, Emiliani V, Fomin-Thunemann N, Fainman Y, Fernandez-Alfonso T, Ferri CGL, Gilad A, Han X, Harris A, Hillman EMC, Hochgeschwender U, Holt MG, Ji N, Kiliç K, Lake EMR, Li L, Li T, Mächler P, Miller EW, Mesquita RC, Nadella KMNS, Nägerl UV, Nasu Y, Nimmerjahn A, Ondrácková P, Pavone FS, Perez Campos C, Peterka DS, Pisano F, Pisanello F, Puppo F, Sabatini BL, Sadegh S, Sakadzic S, Shoham S, Shroff SN, Silver RA, Sims RR, Smith SL, Srinivasan VJ, Thunemann M, Tian L, Tian L, Troxler T, Valera A, Vaziri A, Vinogradov SA, Vitale F, Wang LV, Uhlírová H, Xu C, Yang C, Yang MH, Yellen G, Yizhar O, Zhao Y. PMID: 35493335; PMCID: PMC9047450.
      View in: PubMed   Mentions: 10  
    9. A perspective on astrocyte regulation of neural circuit function and animal behavior. Glia. 2022 08; 70(8):1554-1580. Hirrlinger J, Nimmerjahn A. PMID: 35297525; PMCID: PMC9291267.
      View in: PubMed   Mentions: 7     Fields:    Translation:AnimalsCells
    10. Microglia use TAM receptors to detect and engulf amyloid β plaques. Nat Immunol. 2021 05; 22(5):586-594. Huang Y, Happonen KE, Burrola PG, O'Connor C, Hah N, Huang L, Nimmerjahn A, Lemke G. PMID: 33859405; PMCID: PMC8102389.
      View in: PubMed   Mentions: 128     Fields:    Translation:HumansAnimalsCells
    11. Neural Stem Cell Grafts Form Extensive Synaptic Networks that Integrate with Host Circuits after Spinal Cord Injury. Cell Stem Cell. 2020 09 03; 27(3):430-440.e5. Ceto S, Sekiguchi KJ, Takashima Y, Nimmerjahn A, Tuszynski MH. PMID: 32758426; PMCID: PMC7484050.
      View in: PubMed   Mentions: 57     Fields:    Translation:HumansCells
    12. Monitoring neuronal health. Science. 2020 01 31; 367(6477):510-511. Nimmerjahn A. PMID: 32001643; PMCID: PMC9291239.
      View in: PubMed   Mentions: 2     Fields:    Translation:Cells
    13. Imaging neuromodulators with high spatiotemporal resolution using genetically encoded indicators. Nat Protoc. 2019 12; 14(12):3471-3505. Patriarchi T, Cho JR, Merten K, Marley A, Broussard GJ, Liang R, Williams J, Nimmerjahn A, von Zastrow M, Gradinaru V, Tian L. PMID: 31732722.
      View in: PubMed   Mentions: 19     Fields:    Translation:HumansAnimalsCells
    14. Editorial for "In vivo spinal cord imaging in health, injury and disease". Exp Neurol. 2019 12; 322:113038. Zheng B, Nimmerjahn A. PMID: 31698157.
      View in: PubMed   Mentions:    Fields:    Translation:Animals
    15. Imaging spinal cord activity in behaving animals. Exp Neurol. 2019 10; 320:112974. Nelson NA, Wang X, Cook D, Carey EM, Nimmerjahn A. PMID: 31175843; PMCID: PMC7840222.
      View in: PubMed   Mentions: 14     Fields:    Translation:Animals
    16. Ultrafast neuronal imaging of dopamine dynamics with designed genetically encoded sensors. Science. 2018 06 29; 360(6396). Patriarchi T, Cho JR, Merten K, Howe MW, Marley A, Xiong WH, Folk RW, Broussard GJ, Liang R, Jang MJ, Zhong H, Dombeck D, von Zastrow M, Nimmerjahn A, Gradinaru V, Williams JT, Tian L. PMID: 29853555; PMCID: PMC6287765.
      View in: PubMed   Mentions: 367     Fields:    Translation:HumansAnimalsCells
    17. Phosphatidylserine Exposure Controls Viral Innate Immune Responses by Microglia. Neuron. 2017 Feb 08; 93(3):574-586.e8. Tufail Y, Cook D, Fourgeaud L, Powers CJ, Merten K, Clark CL, Hoffman E, Ngo A, Sekiguchi KJ, O'Shea CC, Lemke G, Nimmerjahn A. PMID: 28111081; PMCID: PMC5600182.
      View in: PubMed   Mentions: 48     Fields:    Translation:AnimalsCells
    18. Imaging large-scale cellular activity in spinal cord of freely behaving mice. Nat Commun. 2016 04 28; 7:11450. Sekiguchi KJ, Shekhtmeyster P, Merten K, Arena A, Cook D, Hoffman E, Ngo A, Nimmerjahn A. PMID: 27121084; PMCID: PMC4853475.
      View in: PubMed   Mentions: 55     Fields:    Translation:AnimalsCells
    19. TAM receptors regulate multiple features of microglial physiology. Nature. 2016 Apr 14; 532(7598):240-244. Fourgeaud L, Través PG, Tufail Y, Leal-Bailey H, Lew ED, Burrola PG, Callaway P, Zagórska A, Rothlin CV, Nimmerjahn A, Lemke G. PMID: 27049947; PMCID: PMC5358512.
      View in: PubMed   Mentions: 268     Fields:    Translation:AnimalsCells
    20. Large-scale recording of astrocyte activity. Curr Opin Neurobiol. 2015 Jun; 32:95-106. Nimmerjahn A, Bergles DE. PMID: 25665733; PMCID: PMC4447573.
      View in: PubMed   Mentions: 35     Fields:    Translation:HumansAnimalsCells
    21. Stepwise recruitment of transcellular and paracellular pathways underlies blood-brain barrier breakdown in stroke. Neuron. 2014 May 07; 82(3):603-17. Knowland D, Arac A, Sekiguchi KJ, Hsu M, Lutz SE, Perrino J, Steinberg GK, Barres BA, Nimmerjahn A, Agalliu D. PMID: 24746419; PMCID: PMC4016169.
      View in: PubMed   Mentions: 287     Fields:    Translation:AnimalsCells
    22. The challenge of connecting the dots in the B.R.A.I.N. Neuron. 2013 Oct 16; 80(2):270-4. Devor A, Bandettini PA, Boas DA, Bower JM, Buxton RB, Cohen LB, Dale AM, Einevoll GT, Fox PT, Franceschini MA, Friston KJ, Fujimoto JG, Geyer MA, Greenberg JH, Halgren E, Hämäläinen MS, Helmchen F, Hyman BT, Jasanoff A, Jernigan TL, Judd LL, Kim SG, Kleinfeld D, Kopell NJ, Kutas M, Kwong KK, Larkum ME, Lo EH, Magistretti PJ, Mandeville JB, Masliah E, Mitra PP, Mobley WC, Moskowitz MA, Nimmerjahn A, Reynolds JH, Rosen BR, Salzberg BM, Schaffer CB, Silva GA, So PT, Spitzer NC, Tootell RB, Van Essen DC, Vanduffel W, Vinogradov SA, Wald LL, Wang LV, Weber B, Yodh AG. PMID: 24139032; PMCID: PMC3864648.
      View in: PubMed   Mentions: 33     Fields:    Translation:HumansAnimals
    23. Optical window preparation for two-photon imaging of microglia in mice. Cold Spring Harb Protoc. 2012 May 01; 2012(5). Nimmerjahn A. PMID: 22550298.
      View in: PubMed   Mentions: 9     Fields:    Translation:AnimalsCells
    24. Surgical implantation of a head plate in mice in preparation for in vivo two-photon imaging of microglia. Cold Spring Harb Protoc. 2012 May 01; 2012(5). Nimmerjahn A. PMID: 22550297.
      View in: PubMed   Mentions: 2     Fields:    Translation:AnimalsCells
    25. Two-photon imaging of microglia in the mouse cortex in vivo. Cold Spring Harb Protoc. 2012 May 01; 2012(5). Nimmerjahn A. PMID: 22550299.
      View in: PubMed   Mentions: 21     Fields:    Translation:AnimalsCells
    26. In vivo labeling of cortical astrocytes with sulforhodamine 101 (SR101). Cold Spring Harb Protoc. 2012 Mar 01; 2012(3):326-34. Nimmerjahn A, Helmchen F. PMID: 22383644.
      View in: PubMed   Mentions: 23     Fields:    Translation:AnimalsCells
    27. Functional imaging in freely moving animals. Curr Opin Neurobiol. 2012 Feb; 22(1):45-53. Kerr JN, Nimmerjahn A. PMID: 22237048.
      View in: PubMed   Mentions: 29     Fields:    Translation:Animals
    28. The role of microglia in the healthy brain. J Neurosci. 2011 Nov 09; 31(45):16064-9. Tremblay MÈ, Stevens B, Sierra A, Wake H, Bessis A, Nimmerjahn A. PMID: 22072657; PMCID: PMC6633221.
      View in: PubMed   Mentions: 456     Fields:    Translation:HumansAnimalsCells
    29. Miniaturized integration of a fluorescence microscope. Nat Methods. 2011 Sep 11; 8(10):871-8. Ghosh KK, Burns LD, Cocker ED, Nimmerjahn A, Ziv Y, Gamal AE, Schnitzer MJ. PMID: 21909102; PMCID: PMC3810311.
      View in: PubMed   Mentions: 436     Fields:    Translation:AnimalsCells
    30. Automated analysis of cellular signals from large-scale calcium imaging data. Neuron. 2009 Sep 24; 63(6):747-60. Mukamel EA, Nimmerjahn A, Schnitzer MJ. PMID: 19778505; PMCID: PMC3282191.
      View in: PubMed   Mentions: 317     Fields:    Translation:HumansAnimalsCells
    31. Motor behavior activates Bergmann glial networks. Neuron. 2009 May 14; 62(3):400-12. Nimmerjahn A, Mukamel EA, Schnitzer MJ. PMID: 19447095; PMCID: PMC2820366.
      View in: PubMed   Mentions: 144     Fields:    Translation:AnimalsCells
    32. Astrocytes going live: advances and challenges. J Physiol. 2009 Apr 15; 587(Pt 8):1639-47. Nimmerjahn A. PMID: 19204050; PMCID: PMC2683952.
      View in: PubMed   Mentions: 45     Fields:    Translation:HumansAnimalsCells
    33. High-speed, miniaturized fluorescence microscopy in freely moving mice. Nat Methods. 2008 Nov; 5(11):935-8. Flusberg BA, Nimmerjahn A, Cocker ED, Mukamel EA, Barretto RP, Ko TH, Burns LD, Jung JC, Schnitzer MJ. PMID: 18836457; PMCID: PMC2828344.
      View in: PubMed   Mentions: 152     Fields:    Translation:Animals
    34. In vivo calcium imaging of circuit activity in cerebellar cortex. J Neurophysiol. 2005 Aug; 94(2):1636-44. Sullivan MR, Nimmerjahn A, Sarkisov DV, Helmchen F, Wang SS. PMID: 16079125.
      View in: PubMed   Mentions: 55     Fields:    Translation:AnimalsCells
    35. Resting microglial cells are highly dynamic surveillants of brain parenchyma in vivo. Science. 2005 May 27; 308(5726):1314-8. Nimmerjahn A, Kirchhoff F, Helmchen F. PMID: 15831717.
      View in: PubMed   Mentions: 2503     Fields:    Translation:AnimalsCells
    36. Lentivirus-based genetic manipulations of cortical neurons and their optical and electrophysiological monitoring in vivo. Proc Natl Acad Sci U S A. 2004 Dec 28; 101(52):18206-11. Dittgen T, Nimmerjahn A, Komai S, Licznerski P, Waters J, Margrie TW, Helmchen F, Denk W, Brecht M, Osten P. PMID: 15608064; PMCID: PMC539748.
      View in: PubMed   Mentions: 226     Fields:    Translation:AnimalsCells
    37. Miniaturized two-photon microscope based on a flexible coherent fiber bundle and a gradient-index lens objective. Opt Lett. 2004 Nov 01; 29(21):2521-3. Göbel W, Kerr JN, Nimmerjahn A, Helmchen F. PMID: 15584281.
      View in: PubMed   Mentions: 70     Fields:    Translation:Animals
    38. Sulforhodamine 101 as a specific marker of astroglia in the neocortex in vivo. Nat Methods. 2004 Oct; 1(1):31-7. Nimmerjahn A, Kirchhoff F, Kerr JN, Helmchen F. PMID: 15782150.
      View in: PubMed   Mentions: 406     Fields:    Translation:AnimalsCells
    39. Distortion-free delivery of nanojoule femtosecond pulses from a Ti:sapphire laser through a hollow-core photonic crystal fiber. Opt Lett. 2004 Jun 01; 29(11):1285-7. Göbel W, Nimmerjahn A, Helmchen F. PMID: 15209273.
      View in: PubMed   Mentions: 17     Fields:    
    40. Sindbis vector SINrep(nsP2S726): a tool for rapid heterologous expression with attenuated cytotoxicity in neurons. J Neurosci Methods. 2004 Feb 15; 133(1-2):81-90. Kim J, Dittgen T, Nimmerjahn A, Waters J, Pawlak V, Helmchen F, Schlesinger S, Seeburg PH, Osten P. PMID: 14757348.
      View in: PubMed   Mentions: 33     Fields:    Translation:AnimalsCells
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