Axel Nimmerjahn

Title(s)	Associate Adjunct Professor, Neurobiology
School	Vc-academic Affairs
Address	9500 Gilman Drive # La Jolla CA 92093
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Publications

Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.

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Destabilized near-infrared fluorescent nanobodies enable background-free targeting of GFP-based biosensors for imaging and manipulation. Nat Commun. 2024 Sep 06; 15(1):7788. Barykina NV, Carey EM, Oliinyk OS, Nimmerjahn A, Verkhusha VV. PMID: 39242569; PMCID: PMC11379940.

View in: PubMed Mentions: Fields:
Bio Biology Sci Science
Translation:Humans Animals Cells
Brainstem Dbh+ neurons control allergen-induced airway hyperreactivity. Nature. 2024 Jul; 631(8021):601-609. Su Y, Xu J, Zhu Z, Chin J, Xu L, Yu H, Nudell V, Dash B, Moya EA, Ye L, Nimmerjahn A, Sun X. PMID: 38987587; PMCID: PMC11254774.

View in: PubMed Mentions: 4 Fields:
Sci Science
Translation:Animals Cells
Fast, Accurate, and Versatile Data Analysis Platform for the Quantification of Molecular Spatiotemporal Signals. bioRxiv. 2024 Jun 01. Mi X, Chen AB, Duarte D, Carey E, Taylor CR, Braaker PN, Bright M, Almeida RG, Lim JX, Ruetten VMS, Zheng W, Wang M, Reitman ME, Wang Y, Poskanzer KE, Lyons DA, Nimmerjahn A, Ahrens MB, Yu G. PMID: 38766026; PMCID: PMC11100599.

View in: PubMed Mentions:
Ultraflexible electrodes for recording neural activity in the mouse spinal cord during motor behavior. Cell Rep. 2024 May 28; 43(5):114199. Wu Y, Temple BA, Sevilla N, Zhang J, Zhu H, Zolotavin P, Jin Y, Duarte D, Sanders E, Azim E, Nimmerjahn A, Pfaff SL, Luan L, Xie C. PMID: 38728138; PMCID: PMC11233142.

View in: PubMed Mentions: Fields:
Cel Cell Biology Mol Molecular Biology
Translation:Animals Cells
Brainstem Dbh+ Neurons Control Chronic Allergen-Induced Airway Hyperreactivity. bioRxiv. 2024 Feb 14. Su Y, Xu J, Zhu Z, Chin J, Xu L, Yu H, Nudell V, Dash B, Moya EA, Ye L, Nimmerjahn A, Sun X. PMID: 36778350; PMCID: PMC9915738.

View in: PubMed Mentions:
An in vivo neuroimmune organoid model to study human microglia phenotypes. Cell. 2023 05 11; 186(10):2111-2126.e20. Schafer ST, Mansour AA, Schlachetzki JCM, Pena M, Ghassemzadeh S, Mitchell L, Mar A, Quang D, Stumpf S, Ortiz IS, Lana AJ, Baek C, Zaghal R, Glass CK, Nimmerjahn A, Gage FH. PMID: 37172564; PMCID: PMC10284271.

View in: PubMed Mentions: 52 Fields:
Cel Cell Biology
Translation:Humans Cells
Multiplex translaminar imaging in the spinal cord of behaving mice. Nat Commun. 2023 03 21; 14(1):1427. Shekhtmeyster P, Carey EM, Duarte D, Ngo A, Gao G, Nelson NA, Clark CL, Nimmerjahn A. PMID: 36944637; PMCID: PMC10030868.

View in: PubMed Mentions: 6 Fields:
Bio Biology Sci Science
Translation:Animals Cells
Trans-segmental imaging in the spinal cord of behaving mice. Nat Biotechnol. 2023 Dec; 41(12):1729-1733. Shekhtmeyster P, Duarte D, Carey EM, Ngo A, Gao G, Olmstead JA, Nelson NA, Nimmerjahn A. PMID: 36879007; PMCID: PMC11229418.

View in: PubMed Mentions: 8 Fields:
Bio Biotechnology
Translation:Animals
Electro-optical mechanically flexible coaxial microprobes for minimally invasive interfacing with intrinsic neural circuits. Nat Commun. 2022 06 07; 13(1):3286. Ward S, Riley C, Carey EM, Nguyen J, Esener S, Nimmerjahn A, Sirbuly DJ. PMID: 35672294; PMCID: PMC9174211.

View in: PubMed Mentions: 2 Fields:
Bio Biology Sci Science
Astrocyte regulation of neural circuit function and animal behavior. Glia. 2022 08; 70(8):1453-1454. Nimmerjahn A, Hirrlinger J. PMID: 35611860.

View in: PubMed Mentions: 2 Fields:
Neu Neurology
Translation:Animals Cells
Single-domain near-infrared protein provides a scaffold for antigen-dependent fluorescent nanobodies. Nat Methods. 2022 06; 19(6):740-750. Oliinyk OS, Baloban M, Clark CL, Carey E, Pletnev S, Nimmerjahn A, Verkhusha VV. PMID: 35606446; PMCID: PMC9189029.

View in: PubMed Mentions: 19 Fields:
Cli Clinical Laboratory Techniques
Translation:Animals
Neurophotonic tools for microscopic measurements and manipulation: status report. Neurophotonics. 2022 Jan; 9(Suppl 1):013001. Abdelfattah AS, Ahuja S, Akkin T, Allu SR, Brake J, Boas DA, Buckley EM, Campbell RE, Chen AI, Cheng X, Cižmár T, Costantini I, De Vittorio M, Devor A, Doran PR, El Khatib M, Emiliani V, Fomin-Thunemann N, Fainman Y, Fernandez-Alfonso T, Ferri CGL, Gilad A, Han X, Harris A, Hillman EMC, Hochgeschwender U, Holt MG, Ji N, Kiliç K, Lake EMR, Li L, Li T, Mächler P, Miller EW, Mesquita RC, Nadella KMNS, Nägerl UV, Nasu Y, Nimmerjahn A, Ondrácková P, Pavone FS, Perez Campos C, Peterka DS, Pisano F, Pisanello F, Puppo F, Sabatini BL, Sadegh S, Sakadzic S, Shoham S, Shroff SN, Silver RA, Sims RR, Smith SL, Srinivasan VJ, Thunemann M, Tian L, Tian L, Troxler T, Valera A, Vaziri A, Vinogradov SA, Vitale F, Wang LV, Uhlírová H, Xu C, Yang C, Yang MH, Yellen G, Yizhar O, Zhao Y. PMID: 35493335; PMCID: PMC9047450.

View in: PubMed Mentions: 15
A perspective on astrocyte regulation of neural circuit function and animal behavior. Glia. 2022 08; 70(8):1554-1580. Hirrlinger J, Nimmerjahn A. PMID: 35297525; PMCID: PMC9291267.

View in: PubMed Mentions: 14 Fields:
Neu Neurology
Translation:Animals Cells
Microglia use TAM receptors to detect and engulf amyloid β plaques. Nat Immunol. 2021 05; 22(5):586-594. Huang Y, Happonen KE, Burrola PG, O'Connor C, Hah N, Huang L, Nimmerjahn A, Lemke G. PMID: 33859405; PMCID: PMC8102389.

View in: PubMed Mentions: 160 Fields:
All Allergy and Immunology
Translation:Humans Animals Cells
Neural Stem Cell Grafts Form Extensive Synaptic Networks that Integrate with Host Circuits after Spinal Cord Injury. Cell Stem Cell. 2020 09 03; 27(3):430-440.e5. Ceto S, Sekiguchi KJ, Takashima Y, Nimmerjahn A, Tuszynski MH. PMID: 32758426; PMCID: PMC7484050.

View in: PubMed Mentions: 69 Fields:
Cel Cell Biology
Translation:Humans Cells
Monitoring neuronal health. Science. 2020 01 31; 367(6477):510-511. Nimmerjahn A. PMID: 32001643; PMCID: PMC9291239.

View in: PubMed Mentions: 2 Fields:
Sci Science
Translation:Cells
Imaging neuromodulators with high spatiotemporal resolution using genetically encoded indicators. Nat Protoc. 2019 12; 14(12):3471-3505. Patriarchi T, Cho JR, Merten K, Marley A, Broussard GJ, Liang R, Williams J, Nimmerjahn A, von Zastrow M, Gradinaru V, Tian L. PMID: 31732722.

View in: PubMed Mentions: 22 Fields:
Cli Clinical Laboratory Techniques Sci Science
Translation:Humans Animals Cells
Editorial for "In vivo spinal cord imaging in health, injury and disease". Exp Neurol. 2019 12; 322:113038. Zheng B, Nimmerjahn A. PMID: 31698157.

View in: PubMed Mentions: Fields:
Neu Neurology
Translation:Animals
Imaging spinal cord activity in behaving animals. Exp Neurol. 2019 10; 320:112974. Nelson NA, Wang X, Cook D, Carey EM, Nimmerjahn A. PMID: 31175843; PMCID: PMC7840222.

View in: PubMed Mentions: 18 Fields:
Neu Neurology
Translation:Animals
Ultrafast neuronal imaging of dopamine dynamics with designed genetically encoded sensors. Science. 2018 06 29; 360(6396). Patriarchi T, Cho JR, Merten K, Howe MW, Marley A, Xiong WH, Folk RW, Broussard GJ, Liang R, Jang MJ, Zhong H, Dombeck D, von Zastrow M, Nimmerjahn A, Gradinaru V, Williams JT, Tian L. PMID: 29853555; PMCID: PMC6287765.

View in: PubMed Mentions: 424 Fields:
Sci Science
Translation:Humans Animals Cells
Phosphatidylserine Exposure Controls Viral Innate Immune Responses by Microglia. Neuron. 2017 Feb 08; 93(3):574-586.e8. Tufail Y, Cook D, Fourgeaud L, Powers CJ, Merten K, Clark CL, Hoffman E, Ngo A, Sekiguchi KJ, O'Shea CC, Lemke G, Nimmerjahn A. PMID: 28111081; PMCID: PMC5600182.

View in: PubMed Mentions: 49 Fields:
Neu Neurology
Translation:Animals Cells
Imaging large-scale cellular activity in spinal cord of freely behaving mice. Nat Commun. 2016 04 28; 7:11450. Sekiguchi KJ, Shekhtmeyster P, Merten K, Arena A, Cook D, Hoffman E, Ngo A, Nimmerjahn A. PMID: 27121084; PMCID: PMC4853475.

View in: PubMed Mentions: 64 Fields:
Bio Biology Sci Science
Translation:Animals Cells
TAM receptors regulate multiple features of microglial physiology. Nature. 2016 Apr 14; 532(7598):240-244. Fourgeaud L, Través PG, Tufail Y, Leal-Bailey H, Lew ED, Burrola PG, Callaway P, Zagórska A, Rothlin CV, Nimmerjahn A, Lemke G. PMID: 27049947; PMCID: PMC5358512.

View in: PubMed Mentions: 290 Fields:
Sci Science
Translation:Animals Cells
Large-scale recording of astrocyte activity. Curr Opin Neurobiol. 2015 Jun; 32:95-106. Nimmerjahn A, Bergles DE. PMID: 25665733; PMCID: PMC4447573.

View in: PubMed Mentions: 36 Fields:
Bio Biology Neu Neurology
Translation:Humans Animals Cells
Stepwise recruitment of transcellular and paracellular pathways underlies blood-brain barrier breakdown in stroke. Neuron. 2014 May 07; 82(3):603-17. Knowland D, Arac A, Sekiguchi KJ, Hsu M, Lutz SE, Perrino J, Steinberg GK, Barres BA, Nimmerjahn A, Agalliu D. PMID: 24746419; PMCID: PMC4016169.

View in: PubMed Mentions: 320 Fields:
Neu Neurology
Translation:Animals Cells
The challenge of connecting the dots in the B.R.A.I.N. Neuron. 2013 Oct 16; 80(2):270-4. Devor A, Bandettini PA, Boas DA, Bower JM, Buxton RB, Cohen LB, Dale AM, Einevoll GT, Fox PT, Franceschini MA, Friston KJ, Fujimoto JG, Geyer MA, Greenberg JH, Halgren E, Hämäläinen MS, Helmchen F, Hyman BT, Jasanoff A, Jernigan TL, Judd LL, Kim SG, Kleinfeld D, Kopell NJ, Kutas M, Kwong KK, Larkum ME, Lo EH, Magistretti PJ, Mandeville JB, Masliah E, Mitra PP, Mobley WC, Moskowitz MA, Nimmerjahn A, Reynolds JH, Rosen BR, Salzberg BM, Schaffer CB, Silva GA, So PT, Spitzer NC, Tootell RB, Van Essen DC, Vanduffel W, Vinogradov SA, Wald LL, Wang LV, Weber B, Yodh AG. PMID: 24139032; PMCID: PMC3864648.

View in: PubMed Mentions: 33 Fields:
Neu Neurology
Translation:Humans Animals
Optical window preparation for two-photon imaging of microglia in mice. Cold Spring Harb Protoc. 2012 May 01; 2012(5). Nimmerjahn A. PMID: 22550298.

View in: PubMed Mentions: 9 Fields:
Cli Clinical Laboratory Techniques
Translation:Animals Cells
Two-photon imaging of microglia in the mouse cortex in vivo. Cold Spring Harb Protoc. 2012 May 01; 2012(5). Nimmerjahn A. PMID: 22550299.

View in: PubMed Mentions: 25 Fields:
Cli Clinical Laboratory Techniques
Translation:Animals Cells
Surgical implantation of a head plate in mice in preparation for in vivo two-photon imaging of microglia. Cold Spring Harb Protoc. 2012 May 01; 2012(5). Nimmerjahn A. PMID: 22550297.

View in: PubMed Mentions: 2 Fields:
Cli Clinical Laboratory Techniques
Translation:Animals Cells
In vivo labeling of cortical astrocytes with sulforhodamine 101 (SR101). Cold Spring Harb Protoc. 2012 Mar 01; 2012(3):326-34. Nimmerjahn A, Helmchen F. PMID: 22383644.

View in: PubMed Mentions: 25 Fields:
Cli Clinical Laboratory Techniques
Translation:Animals Cells
Functional imaging in freely moving animals. Curr Opin Neurobiol. 2012 Feb; 22(1):45-53. Kerr JN, Nimmerjahn A. PMID: 22237048.

View in: PubMed Mentions: 30 Fields:
Bio Biology Neu Neurology
Translation:Animals
The role of microglia in the healthy brain. J Neurosci. 2011 Nov 09; 31(45):16064-9. Tremblay MÈ, Stevens B, Sierra A, Wake H, Bessis A, Nimmerjahn A. PMID: 22072657; PMCID: PMC6633221.

View in: PubMed Mentions: 484 Fields:
Neu Neurology
Translation:Humans Animals Cells
Miniaturized integration of a fluorescence microscope. Nat Methods. 2011 Sep 11; 8(10):871-8. Ghosh KK, Burns LD, Cocker ED, Nimmerjahn A, Ziv Y, Gamal AE, Schnitzer MJ. PMID: 21909102; PMCID: PMC3810311.

View in: PubMed Mentions: 489 Fields:
Cli Clinical Laboratory Techniques
Translation:Animals Cells
Automated analysis of cellular signals from large-scale calcium imaging data. Neuron. 2009 Sep 24; 63(6):747-60. Mukamel EA, Nimmerjahn A, Schnitzer MJ. PMID: 19778505; PMCID: PMC3282191.

View in: PubMed Mentions: 342 Fields:
Neu Neurology
Translation:Humans Animals Cells
Motor behavior activates Bergmann glial networks. Neuron. 2009 May 14; 62(3):400-12. Nimmerjahn A, Mukamel EA, Schnitzer MJ. PMID: 19447095; PMCID: PMC2820366.

View in: PubMed Mentions: 148 Fields:
Neu Neurology
Translation:Animals Cells
Astrocytes going live: advances and challenges. J Physiol. 2009 Apr 15; 587(Pt 8):1639-47. Nimmerjahn A. PMID: 19204050; PMCID: PMC2683952.

View in: PubMed Mentions: 46 Fields:
Phy Physiology
Translation:Humans Animals Cells
High-speed, miniaturized fluorescence microscopy in freely moving mice. Nat Methods. 2008 Nov; 5(11):935-8. Flusberg BA, Nimmerjahn A, Cocker ED, Mukamel EA, Barretto RP, Ko TH, Burns LD, Jung JC, Schnitzer MJ. PMID: 18836457; PMCID: PMC2828344.

View in: PubMed Mentions: 159 Fields:
Cli Clinical Laboratory Techniques
Translation:Animals
In vivo calcium imaging of circuit activity in cerebellar cortex. J Neurophysiol. 2005 Aug; 94(2):1636-44. Sullivan MR, Nimmerjahn A, Sarkisov DV, Helmchen F, Wang SS. PMID: 16079125.

View in: PubMed Mentions: 55 Fields:
Neu Neurology Phy Physiology
Translation:Animals Cells
Resting microglial cells are highly dynamic surveillants of brain parenchyma in vivo. Science. 2005 May 27; 308(5726):1314-8. Nimmerjahn A, Kirchhoff F, Helmchen F. PMID: 15831717.

View in: PubMed Mentions: 2632 Fields:
Sci Science
Translation:Animals Cells
Lentivirus-based genetic manipulations of cortical neurons and their optical and electrophysiological monitoring in vivo. Proc Natl Acad Sci U S A. 2004 Dec 28; 101(52):18206-11. Dittgen T, Nimmerjahn A, Komai S, Licznerski P, Waters J, Margrie TW, Helmchen F, Denk W, Brecht M, Osten P. PMID: 15608064; PMCID: PMC539748.

View in: PubMed Mentions: 236 Fields:
Sci Science
Translation:Animals Cells
Miniaturized two-photon microscope based on a flexible coherent fiber bundle and a gradient-index lens objective. Opt Lett. 2004 Nov 01; 29(21):2521-3. Göbel W, Kerr JN, Nimmerjahn A, Helmchen F. PMID: 15584281.

View in: PubMed Mentions: 68 Fields:
Oph Ophthalmology
Translation:Animals
Sulforhodamine 101 as a specific marker of astroglia in the neocortex in vivo. Nat Methods. 2004 Oct; 1(1):31-7. Nimmerjahn A, Kirchhoff F, Kerr JN, Helmchen F. PMID: 15782150.

View in: PubMed Mentions: 410 Fields:
Cli Clinical Laboratory Techniques
Translation:Animals Cells
Distortion-free delivery of nanojoule femtosecond pulses from a Ti:sapphire laser through a hollow-core photonic crystal fiber. Opt Lett. 2004 Jun 01; 29(11):1285-7. Göbel W, Nimmerjahn A, Helmchen F. PMID: 15209273.

View in: PubMed Mentions: 17 Fields:
Oph Ophthalmology
Sindbis vector SINrep(nsP2S726): a tool for rapid heterologous expression with attenuated cytotoxicity in neurons. J Neurosci Methods. 2004 Feb 15; 133(1-2):81-90. Kim J, Dittgen T, Nimmerjahn A, Waters J, Pawlak V, Helmchen F, Schlesinger S, Seeburg PH, Osten P. PMID: 14757348.

View in: PubMed Mentions: 34 Fields:
Neu Neurology
Translation:Animals Cells