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Eran Mukamel

TitleAssistant Researcher
InstitutionUniversity of California San Diego
DepartmentCognitive Science
Address9500 Gilman Drive #0515
La Jolla CA 92093
Phone858-822-3713
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    Global cortical dynamics in sleep and general anesthesia
    NIH/NINDS R00NS080911Jul 1, 2014 - Jun 30, 2017
    Role: Principal Investigator
    Global cortical dynamics in sleep and general anesthesia
    NIH/NINDS K99NS080911Sep 1, 2012 - Aug 31, 2014
    Role: Principal Investigator

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    Collapse Publications
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help.
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    1. Zhang TY, Keown CL, Wen X, Li J, Vousden DA, Anacker C, Bhattacharyya U, Ryan R, Diorio J, O'Toole N, Lerch JP, Mukamel E, Meaney MJ. Environmental enrichment increases transcriptional and epigenetic differentiation between mouse dorsal and ventral dentate gyrus. Nat Commun. 2018 01 19; 9(1):298. PMID: 29352183.
      View in: PubMed
    2. Luo C, Keown CL, Kurihara L, Zhou J, He Y, Li J, Castanon R, Lucero J, Nery JR, Sandoval JP, Bui B, Sejnowski TJ, Harkins TT, Mukamel E, Behrens MM, Ecker JR. Single-cell methylomes identify neuronal subtypes and regulatory elements in mammalian cortex. Science. 2017 08 11; 357(6351):600-604. PMID: 28798132.
      View in: PubMed
    3. Keown CL, Berletch JB, Castanon R, Nery JR, Disteche CM, Ecker JR, Mukamel E. Allele-specific non-CG DNA methylation marks domains of active chromatin in female mouse brain. Proc Natl Acad Sci U S A. 2017 04 04; 114(14):E2882-E2890. PMID: 28320934.
      View in: PubMed
    4. Mo A, Luo C, Davis FP, Mukamel E, Henry GL, Nery JR, Urich MA, Picard S, Lister R, Eddy SR, Beer MA, Ecker JR, Nathans J. Epigenomic landscapes of retinal rods and cones. Elife. 2016 Mar 07; 5:e11613. PMID: 26949250; PMCID: PMC4798964.
    5. Schultz MD, He Y, Whitaker JW, Hariharan M, Mukamel E, Leung D, Rajagopal N, Nery JR, Urich MA, Chen H, Lin S, Lin Y, Jung I, Schmitt AD, Selvaraj S, Ren B, Sejnowski TJ, Wang W, Ecker JR. Corrigendum: Human body epigenome maps reveal noncanonical DNA methylation variation. Nature. 2016 Feb 11; 530(7589):242. PMID: 26605523.
      View in: PubMed
    6. Barnes SA, Pinto-Duarte A, Kappe A, Zembrzycki A, Metzler A, Mukamel E, Lucero J, Wang X, Sejnowski TJ, Markou A, Behrens MM. Disruption of mGluR5 in parvalbumin-positive interneurons induces core features of neurodevelopmental disorders. Mol Psychiatry. 2015 Oct; 20(10):1161-72. PMID: 26260494; PMCID: PMC4583365.
    7. Lister R, Mukamel E. Turning over DNA methylation in the mind. Front Neurosci. 2015; 9:252. PMID: 26283895; PMCID: PMC4519686.
    8. Mo A, Mukamel E, Davis FP, Luo C, Henry GL, Picard S, Urich MA, Nery JR, Sejnowski TJ, Lister R, Eddy SR, Ecker JR, Nathans J. Epigenomic Signatures of Neuronal Diversity in the Mammalian Brain. Neuron. 2015 Jun 17; 86(6):1369-84. PMID: 26087164; PMCID: PMC4499463.
    9. Schultz MD, He Y, Whitaker JW, Hariharan M, Mukamel E, Leung D, Rajagopal N, Nery JR, Urich MA, Chen H, Lin S, Lin Y, Jung I, Schmitt AD, Selvaraj S, Ren B, Sejnowski TJ, Wang W, Ecker JR. Human body epigenome maps reveal noncanonical DNA methylation variation. Nature. 2015 Jul 09; 523(7559):212-6. PMID: 26030523; PMCID: PMC4499021.
    10. Mukamel E, Pirondini E, Babadi B, Wong KF, Pierce ET, Harrell PG, Walsh JL, Salazar-Gomez AF, Cash SS, Eskandar EN, Weiner VS, Brown EN, Purdon PL. A transition in brain state during propofol-induced unconsciousness. J Neurosci. 2014 Jan 15; 34(3):839-45. PMID: 24431442; PMCID: PMC3891963.
    11. Lister R, Mukamel E, Nery JR, Urich M, Puddifoot CA, Johnson ND, Lucero J, Huang Y, Dwork AJ, Schultz MD, Yu M, Tonti-Filippini J, Heyn H, Hu S, Wu JC, Rao A, Esteller M, He C, Haghighi FG, Sejnowski TJ, Behrens MM, Ecker JR. Global epigenomic reconfiguration during mammalian brain development. Science. 2013 Aug 09; 341(6146):1237905. PMID: 23828890; PMCID: PMC3785061.
    12. Purdon PL, Pierce ET, Mukamel E, Prerau MJ, Walsh JL, Wong KF, Salazar-Gomez AF, Harrell PG, Sampson AL, Cimenser A, Ching S, Kopell NJ, Tavares-Stoeckel C, Habeeb K, Merhar R, Brown EN. Electroencephalogram signatures of loss and recovery of consciousness from propofol. Proc Natl Acad Sci U S A. 2013 Mar 19; 110(12):E1142-51. PMID: 23487781; PMCID: PMC3607036.
    13. Lewis LD, Weiner VS, Mukamel E, Donoghue JA, Eskandar EN, Madsen JR, Anderson WS, Hochberg LR, Cash SS, Brown EN, Purdon PL. Rapid fragmentation of neuronal networks at the onset of propofol-induced unconsciousness. Proc Natl Acad Sci U S A. 2012 Dec 04; 109(49):E3377-86. PMID: 23129622; PMCID: PMC3523833.
    14. Mukamel E, Schnitzer MJ. Unified resolution bounds for conventional and stochastic localization fluorescence microscopy. Phys Rev Lett. 2012 Oct 19; 109(16):168102. PMID: 23215134; PMCID: PMC3521605.
    15. Mukamel E, Babcock H, Zhuang X. Statistical deconvolution for superresolution fluorescence microscopy. Biophys J. 2012 May 16; 102(10):2391-400. PMID: 22677393; PMCID: PMC3353000.
    16. Sampson AL, Babadi B, Prerau MJ, Mukamel E, Brown EN, Purdon PL. Beamforming approach to phase-amplitude modulation analysis of multi-channel EEG. Conf Proc IEEE Eng Med Biol Soc. 2012; 2012:6731-4. PMID: 23367474; PMCID: PMC3753031.
    17. Wong KF, Mukamel E, Salazar AF, Pierce ET, Harrell PG, Walsh JL, Sampson A, Brown EN, Purdon PL. Robust time-varying multivariate coherence estimation: application to electroencephalogram recordings during general anesthesia. Conf Proc IEEE Eng Med Biol Soc. 2011; 2011:4725-8. PMID: 22255393; PMCID: PMC3293406.
    18. Mukamel E, Wong KF, Prerau MJ, Brown EN, Purdon PL. Phase-based measures of cross-frequency coupling in brain electrical dynamics under general anesthesia. Conf Proc IEEE Eng Med Biol Soc. 2011; 2011:1981-4. PMID: 22254722; PMCID: PMC3282123.
    19. Wong KF, Smith AC, Pierce ET, Harrell PG, Walsh JL, Salazar AF, Tavares CL, Cimenser A, Prerau MJ, Mukamel E, Sampson A, Purdon PL, Brown EN. Bayesian analysis of trinomial data in behavioral experiments and its application to human studies of general anesthesia. Conf Proc IEEE Eng Med Biol Soc. 2011; 2011:4705-8. PMID: 22255388; PMCID: PMC3282046.
    20. Mukamel E, Nimmerjahn A, Schnitzer MJ. Automated analysis of cellular signals from large-scale calcium imaging data. Neuron. 2009 Sep 24; 63(6):747-60. PMID: 19778505; PMCID: PMC3282191.
    21. Nimmerjahn A, Mukamel E, Schnitzer MJ. Motor behavior activates Bergmann glial networks. Neuron. 2009 May 14; 62(3):400-12. PMID: 19447095; PMCID: PMC2820366.
    22. Wilt BA, Burns LD, Wei Ho ET, Ghosh KK, Mukamel E, Schnitzer MJ. Advances in light microscopy for neuroscience. Annu Rev Neurosci. 2009; 32:435-506. PMID: 19555292; PMCID: PMC2820375.
    23. Flusberg BA, Nimmerjahn A, Cocker ED, Mukamel E, Barretto RP, Ko TH, Burns LD, Jung JC, Schnitzer MJ. High-speed, miniaturized fluorescence microscopy in freely moving mice. Nat Methods. 2008 Nov; 5(11):935-8. PMID: 18836457; PMCID: PMC2828344.
    24. Wetmore DZ, Mukamel E, Schnitzer MJ. Lock-and-key mechanisms of cerebellar memory recall based on rebound currents. J Neurophysiol. 2008 Oct; 100(4):2328-47. PMID: 17671105; PMCID: PMC2576199.
    25. Mukamel E, Schnitzer MJ. Retinal coding of visual scenes -- repetitive and redundant too? Neuron. 2005 May 05; 46(3):357-9. PMID: 15882630.
      View in: PubMed
    26. Mukamel E, Banaszek K, Walmsley IA, Dorrer C. Direct measurement of the spatial Wigner function with area-integrated detection. Opt Lett. 2003 Aug 01; 28(15):1317-9. PMID: 12906075.
      View in: PubMed
    27. U'Ren AB, Mukamel E, Banaszek K, Walmsley IA. Managing photons for quantum information processing. Philos Trans A Math Phys Eng Sci. 2003 Jul 15; 361(1808):1493-506. PMID: 12869324.
      View in: PubMed
    28. Mukamel E, Shakhnovich EI. Phase diagram for unzipping DNA with long-range interactions. Phys Rev E Stat Nonlin Soft Matter Phys. 2002 Sep; 66(3 Pt 1):032901. PMID: 12366167.
      View in: PubMed
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