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    Eran Mukamel

    TitleAssistant Researcher
    SchoolUniversity of California, San Diego
    DepartmentCognitive Science
    Address9500 Gilman Drive #0515
    CA La Jolla 92093
    Phone858-822-3713
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      Collapse Research Activities and Funding
      Global cortical dynamics in sleep and general anesthesia
      NIH/NINDS R00NS080911Jul 1, 2014 - Jun 30, 2017
      Role: Principal Investigator
      Global cortical dynamics in sleep and general anesthesia
      NIH/NINDS K99NS080911Sep 1, 2012 - Aug 31, 2014
      Role: Principal Investigator

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      Collapse Publications
      Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help.
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      1. Luo C, Keown CL, Kurihara L, Zhou J, He Y, Li J, Castanon R, Lucero J, Nery JR, Sandoval JP, Bui B, Sejnowski TJ, Harkins TT, Mukamel E, Behrens MM, Ecker JR. Single-cell methylomes identify neuronal subtypes and regulatory elements in mammalian cortex. Science. 2017 Aug 11; 357(6351):600-604. PMID: 28798132.
        View in: PubMed
      2. Keown CL, Berletch JB, Castanon R, Nery JR, Disteche CM, Ecker JR, Mukamel E. Allele-specific non-CG DNA methylation marks domains of active chromatin in female mouse brain. Proc Natl Acad Sci U S A. 2017 Apr 04; 114(14):E2882-E2890. PMID: 28320934.
        View in: PubMed
      3. Mo A, Luo C, Davis FP, Mukamel E, Henry GL, Nery JR, Urich MA, Picard S, Lister R, Eddy SR, Beer MA, Ecker JR, Nathans J. Epigenomic landscapes of retinal rods and cones. Elife. 2016 Mar 07; 5:e11613. PMID: 26949250; PMCID: PMC4798964.
        View in: PubMed, PubMed Central
      4. Schultz MD, He Y, Whitaker JW, Hariharan M, Mukamel E, Leung D, Rajagopal N, Nery JR, Urich MA, Chen H, Lin S, Lin Y, Jung I, Schmitt AD, Selvaraj S, Ren B, Sejnowski TJ, Wang W, Ecker JR. Corrigendum: Human body epigenome maps reveal noncanonical DNA methylation variation. Nature. 2016 Feb 11; 530(7589):242. PMID: 26605523.
        View in: PubMed
      5. Barnes SA, Pinto-Duarte A, Kappe A, Zembrzycki A, Metzler A, Mukamel E, Lucero J, Wang X, Sejnowski TJ, Markou A, Behrens MM. Disruption of mGluR5 in parvalbumin-positive interneurons induces core features of neurodevelopmental disorders. Mol Psychiatry. 2015 Oct; 20(10):1161-72. PMID: 26260494; PMCID: PMC4583365.
        View in: PubMed, PubMed Central
      6. Lister R, Mukamel E. Turning over DNA methylation in the mind. Front Neurosci. 2015; 9:252. PMID: 26283895; PMCID: PMC4519686.
        View in: PubMed, PubMed Central
      7. Mo A, Mukamel E, Davis FP, Luo C, Henry GL, Picard S, Urich MA, Nery JR, Sejnowski TJ, Lister R, Eddy SR, Ecker JR, Nathans J. Epigenomic Signatures of Neuronal Diversity in the Mammalian Brain. Neuron. 2015 Jun 17; 86(6):1369-84. PMID: 26087164; PMCID: PMC4499463.
        View in: PubMed, PubMed Central
      8. Schultz MD, He Y, Whitaker JW, Hariharan M, Mukamel E, Leung D, Rajagopal N, Nery JR, Urich MA, Chen H, Lin S, Lin Y, Jung I, Schmitt AD, Selvaraj S, Ren B, Sejnowski TJ, Wang W, Ecker JR. Human body epigenome maps reveal noncanonical DNA methylation variation. Nature. 2015 Jul 09; 523(7559):212-6. PMID: 26030523; PMCID: PMC4499021.
        View in: PubMed, PubMed Central
      9. Mukamel E, Pirondini E, Babadi B, Wong KF, Pierce ET, Harrell PG, Walsh JL, Salazar-Gomez AF, Cash SS, Eskandar EN, Weiner VS, Brown EN, Purdon PL. A transition in brain state during propofol-induced unconsciousness. J Neurosci. 2014 Jan 15; 34(3):839-45. PMID: 24431442; PMCID: PMC3891963.
        View in: PubMed, PubMed Central
      10. Lister R, Mukamel E, Nery JR, Urich M, Puddifoot CA, Johnson ND, Lucero J, Huang Y, Dwork AJ, Schultz MD, Yu M, Tonti-Filippini J, Heyn H, Hu S, Wu JC, Rao A, Esteller M, He C, Haghighi FG, Sejnowski TJ, Behrens MM, Ecker JR. Global epigenomic reconfiguration during mammalian brain development. Science. 2013 Aug 09; 341(6146):1237905. PMID: 23828890; PMCID: PMC3785061.
        View in: PubMed, PubMed Central
      11. Purdon PL, Pierce ET, Mukamel E, Prerau MJ, Walsh JL, Wong KF, Salazar-Gomez AF, Harrell PG, Sampson AL, Cimenser A, Ching S, Kopell NJ, Tavares-Stoeckel C, Habeeb K, Merhar R, Brown EN. Electroencephalogram signatures of loss and recovery of consciousness from propofol. Proc Natl Acad Sci U S A. 2013 Mar 19; 110(12):E1142-51. PMID: 23487781; PMCID: PMC3607036.
        View in: PubMed, PubMed Central
      12. Lewis LD, Weiner VS, Mukamel E, Donoghue JA, Eskandar EN, Madsen JR, Anderson WS, Hochberg LR, Cash SS, Brown EN, Purdon PL. Rapid fragmentation of neuronal networks at the onset of propofol-induced unconsciousness. Proc Natl Acad Sci U S A. 2012 Dec 04; 109(49):E3377-86. PMID: 23129622; PMCID: PMC3523833.
        View in: PubMed, PubMed Central
      13. Mukamel E, Schnitzer MJ. Unified resolution bounds for conventional and stochastic localization fluorescence microscopy. Phys Rev Lett. 2012 Oct 19; 109(16):168102. PMID: 23215134; PMCID: PMC3521605.
        View in: PubMed, PubMed Central
      14. Mukamel E, Babcock H, Zhuang X. Statistical deconvolution for superresolution fluorescence microscopy. Biophys J. 2012 May 16; 102(10):2391-400. PMID: 22677393; PMCID: PMC3353000.
        View in: PubMed, PubMed Central
      15. Sampson AL, Babadi B, Prerau MJ, Mukamel E, Brown EN, Purdon PL. Beamforming approach to phase-amplitude modulation analysis of multi-channel EEG. Conf Proc IEEE Eng Med Biol Soc. 2012; 2012:6731-4. PMID: 23367474; PMCID: PMC3753031.
        View in: PubMed, PubMed Central
      16. Wong KF, Smith AC, Pierce ET, Harrell PG, Walsh JL, Salazar AF, Tavares CL, Cimenser A, Prerau MJ, Mukamel E, Sampson A, Purdon PL, Brown EN. Bayesian analysis of trinomial data in behavioral experiments and its application to human studies of general anesthesia. Conf Proc IEEE Eng Med Biol Soc. 2011; 2011:4705-8. PMID: 22255388; PMCID: PMC3282046.
        View in: PubMed, PubMed Central
      17. Mukamel E, Wong KF, Prerau MJ, Brown EN, Purdon PL. Phase-based measures of cross-frequency coupling in brain electrical dynamics under general anesthesia. Conf Proc IEEE Eng Med Biol Soc. 2011; 2011:1981-4. PMID: 22254722; PMCID: PMC3282123.
        View in: PubMed, PubMed Central
      18. Wong KF, Mukamel E, Salazar AF, Pierce ET, Harrell PG, Walsh JL, Sampson A, Brown EN, Purdon PL. Robust time-varying multivariate coherence estimation: application to electroencephalogram recordings during general anesthesia. Conf Proc IEEE Eng Med Biol Soc. 2011; 2011:4725-8. PMID: 22255393; PMCID: PMC3293406.
        View in: PubMed, PubMed Central
      19. Mukamel E, Nimmerjahn A, Schnitzer MJ. Automated analysis of cellular signals from large-scale calcium imaging data. Neuron. 2009 Sep 24; 63(6):747-60. PMID: 19778505; PMCID: PMC3282191.
        View in: PubMed, PubMed Central
      20. Nimmerjahn A, Mukamel E, Schnitzer MJ. Motor behavior activates Bergmann glial networks. Neuron. 2009 May 14; 62(3):400-12. PMID: 19447095; PMCID: PMC2820366.
        View in: PubMed, PubMed Central
      21. Wilt BA, Burns LD, Wei Ho ET, Ghosh KK, Mukamel E, Schnitzer MJ. Advances in light microscopy for neuroscience. Annu Rev Neurosci. 2009; 32:435-506. PMID: 19555292; PMCID: PMC2820375.
        View in: PubMed, PubMed Central
      22. Flusberg BA, Nimmerjahn A, Cocker ED, Mukamel E, Barretto RP, Ko TH, Burns LD, Jung JC, Schnitzer MJ. High-speed, miniaturized fluorescence microscopy in freely moving mice. Nat Methods. 2008 Nov; 5(11):935-8. PMID: 18836457; PMCID: PMC2828344.
        View in: PubMed, PubMed Central
      23. Wetmore DZ, Mukamel E, Schnitzer MJ. Lock-and-key mechanisms of cerebellar memory recall based on rebound currents. J Neurophysiol. 2008 Oct; 100(4):2328-47. PMID: 17671105; PMCID: PMC2576199.
        View in: PubMed, PubMed Central
      24. Mukamel E, Schnitzer MJ. Retinal coding of visual scenes -- repetitive and redundant too? Neuron. 2005 May 05; 46(3):357-9. PMID: 15882630.
        View in: PubMed
      25. Mukamel E, Banaszek K, Walmsley IA, Dorrer C. Direct measurement of the spatial Wigner function with area-integrated detection. Opt Lett. 2003 Aug 01; 28(15):1317-9. PMID: 12906075.
        View in: PubMed
      26. U'Ren AB, Mukamel E, Banaszek K, Walmsley IA. Managing photons for quantum information processing. Philos Trans A Math Phys Eng Sci. 2003 Jul 15; 361(1808):1493-506. PMID: 12869324.
        View in: PubMed
      27. Mukamel E, Shakhnovich EI. Phase diagram for unzipping DNA with long-range interactions. Phys Rev E Stat Nonlin Soft Matter Phys. 2002 Sep; 66(3 Pt 1):032901. PMID: 12366167.
        View in: PubMed
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