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Lingyan Shi

Title(s)Assistant Professor, Bioengineering
SchoolVc-academic Affairs
Address9500 Gilman Drive #
La Jolla CA 92093
Phone8/2-46--5493
ORCID ORCID Icon0000-0003-1373-3206 Additional info
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Enhanced stimulated raman scattering of solvent due to anharmonic energy transfer from resonance raman solute molecules. Opt Express. 2020 Jul 20; 28(15):21792-21804. Shi L, Gayen T, Budansky Y, Yoo K, Secor J, Harvey T, Harvey G, Shumyatsky P, Nolan D, Alfano R. PMID: 32752451.
      View in: PubMed   Mentions:    Fields:    
    2. Mammalian cell and tissue imaging using Raman and coherent Raman microscopy. Wiley Interdiscip Rev Syst Biol Med. 2020 Jul 19; e1501. Fung AA, Shi L. PMID: 32686297.
      View in: PubMed   Mentions:    Fields:    
    3. Mid-infrared metabolic imaging with vibrational probes. Nat Methods. 2020 Aug; 17(8):844-851. Shi L, Liu X, Shi L, Stinson HT, Rowlette J, Kahl LJ, Evans CR, Zheng C, Dietrich LEP, Min W. PMID: 32601425.
      View in: PubMed   Mentions:    Fields:    
    4. Explanation of the competition between O- and E-wave induced stimulated Raman and supercontinuum in calcite under ultrafast laser excitation. Appl Opt. 2020 Jun 10; 59(17):5252-5257. Mazhar SFB, Meyer HJ, Samuels T, Sharonov M, Shi L, Alfano RR. PMID: 32543546.
      View in: PubMed   Mentions:    Fields:    
    5. Background-free imaging of chemical bonds by a simple and robust frequency-modulated stimulated Raman scattering microscopy. Opt Express. 2020 May 11; 28(10):15663-15677. Xiong H, Qian N, Zhao Z, Shi L, Miao Y, Min W. PMID: 32403589.
      View in: PubMed   Mentions:    Fields:    
    6. Distinguishing metastatic triple-negative breast cancer from nonmetastatic breast cancer using second harmonic generation imaging and resonance Raman spectroscopy. J Biophotonics. 2020 Jul; 13(7):e202000005. Bendau E, Smith J, Zhang L, Ackerstaff E, Kruchevsky N, Wu B, Koutcher JA, Alfano R, Shi L. PMID: 32219996.
      View in: PubMed   Mentions: 1     Fields:    
    7. Comparison of continuous wave versus picosecond SRS and the resonance SRS effect. Appl Opt. 2020 Jan 20; 59(3):622-627. Shumyatsky P, Shi L, Sordillo LA, Budansky Y, Alfano RR. PMID: 32225186.
      View in: PubMed   Mentions:    Fields:    
    8. Optical biopsy identification and grading of gliomas using label-free visible resonance Raman spectroscopy. J Biomed Opt. 2019 09; 24(9):1-12. Zhou Y, Liu CH, Wu B, Yu X, Cheng G, Zhu K, Wang K, Zhang C, Zhao M, Zong R, Zhang L, Shi L, Alfano RR. PMID: 31512439.
      View in: PubMed   Mentions: 2     Fields:    Translation:HumansCells
    9. Majorana vortex photons a form of entangled photons propagation through brain tissue. J Biophotonics. 2019 10; 12(10):e201900036. Mamani S, Shi L, Nolan D, Alfano R. PMID: 31162813.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    10. Spectral tracing of deuterium for imaging glucose metabolism. Nat Biomed Eng. 2019 05; 3(5):402-413. Zhang L, Shi L, Shen Y, Miao Y, Wei M, Qian N, Liu Y, Min W. PMID: 31036888.
      View in: PubMed   Mentions: 3     Fields:    Translation:HumansAnimalsCells
    11. Volumetric chemical imaging by clearing-enhanced stimulated Raman scattering microscopy. Proc Natl Acad Sci U S A. 2019 04 02; 116(14):6608-6617. Wei M, Shi L, Shen Y, Zhao Z, Guzman A, Kaufman LJ, Wei L, Min W. PMID: 30872474.
      View in: PubMed   Mentions: 7     Fields:    Translation:HumansAnimalsCells
    12. Transmission of classically entangled beams through mouse brain tissue. J Biophotonics. 2018 12; 11(12):e201800096. Mamani S, Shi L, Ahmed T, Karnik R, Rodríguez-Contreras A, Nolan D, Alfano R. PMID: 30027681.
      View in: PubMed   Mentions:    Fields:    Translation:Animals
    13. Optical imaging of metabolic dynamics in animals. Nat Commun. 2018 08 06; 9(1):2995. Shi L, Zheng C, Shen Y, Chen Z, Silveira ES, Zhang L, Wei M, Liu C, de Sena-Tomas C, Targoff K, Min W. PMID: 30082908.
      View in: PubMed   Mentions: 8     Fields:    Translation:HumansAnimalsCells
    14. Visualizing protein synthesis in mice with in vivo labeling of deuterated amino acids using vibrational imaging. APL Photonics. 2018; 3(9):092401-1-10. Shi L, Shen Y, Min W.View Publication.
    15. Resonance Raman scattering of ß-carotene solution excited by visible laser beams into second singlet state. J Photochem Photobiol B. 2018 Feb; 179:18-22. Lu L, Shi L, Secor J, Alfano R. PMID: 29306722.
      View in: PubMed   Mentions:    Fields:    
    16. Two-color vibrational imaging of glucose metabolism using stimulated Raman scattering. Chem Commun (Camb). 2018 Jan 07; 54(2):152-155. Long R, Zhang L, Shi L, Shen Y, Hu F, Zeng C, Min W. PMID: 29218356.
      View in: PubMed   Mentions: 3     Fields:    Translation:HumansAnimalsCells
    17. Metabolic activity induces membrane phase separation in endoplasmic reticulum. Proc Natl Acad Sci U S A. 2017 12 19; 114(51):13394-13399. Shen Y, Zhao Z, Zhang L, Shi L, Shahriar S, Chan RB, Di Paolo G, Min W. PMID: 29196526.
      View in: PubMed   Mentions: 9     Fields:    Translation:HumansAnimalsCells
    18. Propagation of Gaussian and Laguerre-Gaussian vortex beams through mouse brain tissue. J Biophotonics. 2017 Dec; 10(12):1756-1760. Shi L, Lindwasser L, Wang W, Alfano R, Rodríguez-Contreras A. PMID: 28635151.
      View in: PubMed   Mentions: 1     Fields:    Translation:Animals
    19. Label-Free Fluorescence Spectroscopy for Detecting Key Biomolecules in Brain Tissue from a Mouse Model of Alzheimer's Disease. Sci Rep. 2017 06 01; 7(1):2599. Shi L, Lu L, Harvey G, Harvey T, Rodríguez-Contreras A, Alfano RR. PMID: 28572632.
      View in: PubMed   Mentions: 3     Fields:    Translation:HumansAnimals
    20. Alzheimer mouse brain tissue measured by time resolved fluorescence spectroscopy using single- and multi-photon excitation of label free native molecules. J Biophotonics. 2018 01; 11(1). Das B, Shi L, Budansky Y, Rodriguez-Contreras A, Alfano R. PMID: 28464457.
      View in: PubMed   Mentions: 3     Fields:    Translation:AnimalsCells
    21. Short wavelength infrared optical windows for evaluation of benign and malignant tissues. J Biomed Opt. 2017 04 01; 22(4):45002. Sordillo DC, Sordillo LA, Sordillo PP, Shi L, Alfano RR. PMID: 28384701.
      View in: PubMed   Mentions: 2     Fields:    Translation:HumansAnimals
    22. Photon Entanglement Through Brain Tissue. Sci Rep. 2016 12 20; 6:37714. Shi L, Galvez EJ, Alfano RR. PMID: 27995952.
      View in: PubMed   Mentions:    Fields:    Translation:Animals
    23. Vulnerable atherosclerotic plaque detection by resonance Raman spectroscopy. J Biomed Opt. 2016 12 01; 21(12):127006. Liu CH, Boydston-White S, Weisberg A, Wang W, Sordillo LA, Perotte A, Tomaselli VP, Sordillo PP, Pei Z, Shi L, Alfano RR. PMID: 27999865.
      View in: PubMed   Mentions: 3     Fields:    Translation:Humans
    24. Deep transmission of Laguerre-Gaussian vortex beams through turbid scattering media. Opt Lett. 2016 May 01; 41(9):2069-72. Wang WB, Gozali R, Shi L, Lindwasser L, Alfano RR. PMID: 27128076.
      View in: PubMed   Mentions: 4     Fields:    
    25. Terahertz spectroscopy of brain tissue from a mouse model of Alzheimer's disease. J Biomed Opt. 2016 Jan; 21(1):15014. Shi L, Shumyatsky P, Rodríguez-Contreras A, Alfano R. PMID: 26818714.
      View in: PubMed   Mentions: 5     Fields:    Translation:Animals
    26. Transmission in near-infrared optical windows for deep brain imaging. J Biophotonics. 2016 Jan; 9(1-2):38-43. Shi L, Sordillo LA, Rodríguez-Contreras A, Alfano R. PMID: 26556561.
      View in: PubMed   Mentions: 25     Fields:    Translation:Animals
    27. Gaussian beam in two-photon fluorescence imaging of rat brain microvessel. J Biomed Opt. 2014 Dec; 19(12):126006. Shi L, Rodríguez-Contreras A, Alfano RR. PMID: 25490048.
      View in: PubMed   Mentions: 4     Fields:    Translation:Animals
    28. Quantification of transient increase of the blood-brain barrier permeability to macromolecules by optimized focused ultrasound combined with microbubbles. Int J Nanomedicine. 2014; 9:4437-48. Shi L, Palacio-Mancheno P, Badami J, Shin DW, Zeng M, Cardoso L, Tu R, Fu BM. PMID: 25258533.
      View in: PubMed   Mentions: 4     Fields:    Translation:Animals
    29. Temporal effects of vascular endothelial growth factor and 3,5-cyclic monophosphate on blood-brain barrier solute permeability in vivo. J Neurosci Res. 2014 Dec; 92(12):1678-89. Shi L, Zeng M, Fu BM. PMID: 25066133.
      View in: PubMed   Mentions: 2     Fields:    Translation:Animals
    30. Deep two-photon microscopic imaging through brain tissue using the second singlet state from fluorescent agent chlorophyll a in spinach leaf. J Biomed Opt. 2014 Jun; 19(6):066009. Shi L, Rodríguez-Contreras A, Budansky Y, Pu Y, Nguyen TA, Alfano RR. PMID: 24967915.
      View in: PubMed   Mentions: 3     Fields:    Translation:Animals
    31. A method to make a craniotomy on the ventral skull of neonate rodents. J Vis Exp. 2014 May 22; (87). Rodríguez-Contreras A, Shi L, Fu BM. PMID: 24894439.
      View in: PubMed   Mentions: 2     Fields:    Translation:Animals
    32. Quantification of blood-brain barrier solute permeability and brain transport by multiphoton microscopy. J Biomech Eng. 2014 Mar; 136(3):031005. Shi L, Zeng M, Sun Y, Fu BM. PMID: 24193698.
      View in: PubMed   Mentions: 15     Fields:    Translation:Animals
    33. Time-resolved photoluminescence of Zn(OH)2 and its composites with graphite oxides. Opt Lett. 2013 Jul 01; 38(13):2227-9. Islam SZ, Gayen T, Das BB, Shi L, Seredych M, Moussawi A, Bandosz TJ, Alfano R. PMID: 23811885.
      View in: PubMed   Mentions:    Fields:    
    34. Structural and optical characterization of Zn(OH)2 and its composites with graphite oxides. Opt Lett. 2013 Mar 15; 38(6):962-4. Islam SM, Gayen T, Moussawi A, Shi L, Seredych M, Bandosz TJ, Alfano R. PMID: 23503274.
      View in: PubMed   Mentions:    Fields: