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Lingyan Shi

Title(s)Assistant Researcher, Bioengineering
SchoolAcademic Aff
Phone858-246-5493
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help.
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    1. Zhou Y, Liu CH, Wu B, Yu X, Cheng G, Zhu K, Wang K, Zhang C, Zhao M, Zong R, Zhang L, Shi L, Alfano RR. Optical biopsy identification and grading of gliomas using label-free visible resonance Raman spectroscopy. J Biomed Opt. 2019 09; 24(9):1-12. PMID: 31512439.
      View in: PubMed
    2. Mamani S, Shi L, Nolan D, Alfano R. Majorana vortex photons a form of entangled photons propagation through brain tissue. J Biophotonics. 2019 Jun 04; e201900036. PMID: 31162813.
      View in: PubMed
    3. Zhang L, Shi L, Shen Y, Miao Y, Wei M, Qian N, Liu Y, Min W. Spectral tracing of deuterium for imaging glucose metabolism. Nat Biomed Eng. 2019 May; 3(5):402-413. PMID: 31036888.
      View in: PubMed
    4. Wei M, Shi L, Shen Y, Zhao Z, Guzman A, Kaufman LJ, Wei L, Min W. Volumetric chemical imaging by clearing-enhanced stimulated Raman scattering microscopy. Proc Natl Acad Sci U S A. 2019 04 02; 116(14):6608-6617. PMID: 30872474.
      View in: PubMed
    5. Mamani S, Shi L, Ahmed T, Karnik R, Rodríguez-Contreras A, Nolan D, Alfano R. Transmission of classically entangled beams through mouse brain tissue. J Biophotonics. 2018 12; 11(12):e201800096. PMID: 30027681.
      View in: PubMed
    6. Shi L, Zheng C, Shen Y, Chen Z, Silveira ES, Zhang L, Wei M, Liu C, de Sena-Tomas C, Targoff K, Min W. Optical imaging of metabolic dynamics in animals. Nat Commun. 2018 08 06; 9(1):2995. PMID: 30082908.
      View in: PubMed
    7. Lu L, Shi L, Secor J, Alfano R. Resonance Raman scattering of ß-carotene solution excited by visible laser beams into second singlet state. J Photochem Photobiol B. 2018 Feb; 179:18-22. PMID: 29306722.
      View in: PubMed
    8. Long R, Zhang L, Shi L, Shen Y, Hu F, Zeng C, Min W. Two-color vibrational imaging of glucose metabolism using stimulated Raman scattering. Chem Commun (Camb). 2018 Jan 07; 54(2):152-155. PMID: 29218356.
      View in: PubMed
    9. Shen Y, Zhao Z, Zhang L, Shi L, Shahriar S, Chan RB, Di Paolo G, Min W. Metabolic activity induces membrane phase separation in endoplasmic reticulum. Proc Natl Acad Sci U S A. 2017 12 19; 114(51):13394-13399. PMID: 29196526.
      View in: PubMed
    10. Singh RK, Canter CE, Shi L, Colan SD, Dodd DA, Everitt MD, Hsu DT, Jefferies JL, Kantor PF, Pahl E, Rossano JW, Towbin JA, Wilkinson JD, Lipshultz SE. Survival Without Cardiac Transplantation Among Children With Dilated Cardiomyopathy. J Am Coll Cardiol. 2017 Nov 28; 70(21):2663-2673. PMID: 29169474.
      View in: PubMed
    11. Shi L, Lindwasser L, Wang W, Alfano R, Rodríguez-Contreras A. Propagation of Gaussian and Laguerre-Gaussian vortex beams through mouse brain tissue. J Biophotonics. 2017 Dec; 10(12):1756-1760. PMID: 28635151.
      View in: PubMed
    12. Shi L, Lu L, Harvey G, Harvey T, Rodríguez-Contreras A, Alfano RR. Label-Free Fluorescence Spectroscopy for Detecting Key Biomolecules in Brain Tissue from a Mouse Model of Alzheimer's Disease. Sci Rep. 2017 06 01; 7(1):2599. PMID: 28572632.
      View in: PubMed
    13. Das B, Shi L, Budansky Y, Rodriguez-Contreras A, Alfano R. Alzheimer mouse brain tissue measured by time resolved fluorescence spectroscopy using single- and multi-photon excitation of label free native molecules. J Biophotonics. 2018 01; 11(1). PMID: 28464457.
      View in: PubMed
    14. Sordillo DC, Sordillo LA, Sordillo PP, Shi L, Alfano RR. Short wavelength infrared optical windows for evaluation of benign and malignant tissues. J Biomed Opt. 2017 04 01; 22(4):45002. PMID: 28384701.
      View in: PubMed
    15. Shi L, Galvez EJ, Alfano RR. Photon Entanglement Through Brain Tissue. Sci Rep. 2016 12 20; 6:37714. PMID: 27995952.
      View in: PubMed
    16. Liu CH, Boydston-White S, Weisberg A, Wang W, Sordillo LA, Perotte A, Tomaselli VP, Sordillo PP, Pei Z, Shi L, Alfano RR. Vulnerable atherosclerotic plaque detection by resonance Raman spectroscopy. J Biomed Opt. 2016 12 01; 21(12):127006. PMID: 27999865.
      View in: PubMed
    17. Wang WB, Gozali R, Shi L, Lindwasser L, Alfano RR. Deep transmission of Laguerre-Gaussian vortex beams through turbid scattering media. Opt Lett. 2016 May 01; 41(9):2069-72. PMID: 27128076.
      View in: PubMed
    18. Shi L, Shumyatsky P, Rodríguez-Contreras A, Alfano R. Terahertz spectroscopy of brain tissue from a mouse model of Alzheimer's disease. J Biomed Opt. 2016 Jan; 21(1):15014. PMID: 26818714.
      View in: PubMed
    19. Shi L, Sordillo LA, Rodríguez-Contreras A, Alfano R. Transmission in near-infrared optical windows for deep brain imaging. J Biophotonics. 2016 Jan; 9(1-2):38-43. PMID: 26556561.
      View in: PubMed
    20. Shi L, Rodríguez-Contreras A, Alfano RR. Gaussian beam in two-photon fluorescence imaging of rat brain microvessel. J Biomed Opt. 2014 Dec; 19(12):126006. PMID: 25490048.
      View in: PubMed
    21. Shi L, Palacio-Mancheno P, Badami J, Shin DW, Zeng M, Cardoso L, Tu R, Fu BM. Quantification of transient increase of the blood-brain barrier permeability to macromolecules by optimized focused ultrasound combined with microbubbles. Int J Nanomedicine. 2014; 9:4437-48. PMID: 25258533.
      View in: PubMed
    22. Shi L, Zeng M, Fu BM. Temporal effects of vascular endothelial growth factor and 3,5-cyclic monophosphate on blood-brain barrier solute permeability in vivo. J Neurosci Res. 2014 Dec; 92(12):1678-89. PMID: 25066133.
      View in: PubMed
    23. Shi L, Rodríguez-Contreras A, Budansky Y, Pu Y, Nguyen TA, Alfano RR. Deep two-photon microscopic imaging through brain tissue using the second singlet state from fluorescent agent chlorophyll a in spinach leaf. J Biomed Opt. 2014 Jun; 19(6):066009. PMID: 24967915.
      View in: PubMed
    24. Rodríguez-Contreras A, Shi L, Fu BM. A method to make a craniotomy on the ventral skull of neonate rodents. J Vis Exp. 2014 May 22; (87). PMID: 24894439.
      View in: PubMed
    25. Shi L, Zeng M, Sun Y, Fu BM. Quantification of blood-brain barrier solute permeability and brain transport by multiphoton microscopy. J Biomech Eng. 2014 Mar; 136(3):031005. PMID: 24193698.
      View in: PubMed
    26. Islam SZ, Gayen T, Das BB, Shi L, Seredych M, Moussawi A, Bandosz TJ, Alfano R. Time-resolved photoluminescence of Zn(OH)2 and its composites with graphite oxides. Opt Lett. 2013 Jul 01; 38(13):2227-9. PMID: 23811885.
      View in: PubMed
    27. Islam SM, Gayen T, Moussawi A, Shi L, Seredych M, Bandosz TJ, Alfano R. Structural and optical characterization of Zn(OH)2 and its composites with graphite oxides. Opt Lett. 2013 Mar 15; 38(6):962-4. PMID: 23503274.
      View in: PubMed
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