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Patricia Jennings

TitleProfessor
InstitutionUniversity of California San Diego
DepartmentChemistry and Biochemistry
Address9500 Gilman Drive #0375
La Jolla CA 92093
Phone858-534-6417
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    Collapse Research 
    Collapse Research Activities and Funding
    The New Family of NEET Proteins: 2Fe-2S Protein Mediated Health and Disease
    NIH/NIGMS R01GM101467Sep 21, 2012 - Aug 31, 2016
    Role: Principal Investigator
    HTS for Modulators of MitoNEET Proteins'Function
    NIH/NIDA R03DA034597May 1, 2012 - Apr 30, 2014
    Role: Principal Investigator
    Acquisition of a 500 MHz NMR Console
    NIH/NCRR S10RR020874Apr 1, 2006 - Mar 31, 2007
    Role: Principal Investigator
    PKA & PKC Targeting Mechanisms (Program Project)
    NIH/NIDDK P01DK054441Dec 15, 1998 - Mar 31, 2018
    Role: Co-Investigator
    Investigation of the Functional/Folding Landscapes of the Il-1 Family
    NIH/NIGMS R01GM054038Aug 1, 1996 - Feb 28, 2012
    Role: Principal Investigator
    FOLDING MECHANISM OF A BETA PROTEIN
    NIH/NIGMS R29GM054038May 1, 1996 - Apr 30, 2002
    Role: Principal Investigator
    AN NMR INVESTIGATION OF PROTEIN FOLDING MECHANISMS
    NIH/NIGMS F32GM014541Dec 31, 1991
    Role: Principal Investigator
    A Synchroton Radiation Structural Biology Resource
    NIH P41RR001209Mar 1, 1980 - Feb 28, 2015
    Role: Co-Investigator

    Collapse Bibliographic 
    Collapse Publications
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help.
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    1. Cheng RR, Haglund E, Tiee NS, Morcos F, Levine H, Adams JA, Jennings PA, Onuchic JN. Designing bacterial signaling interactions with coevolutionary landscapes. PLoS One. 2018; 13(8):e0201734. PMID: 30125296.
      View in: PubMed
    2. Haglund E, Nguyen L, Schafer NP, Lammert H, Jennings PA, Onuchic JN. Uncovering the molecular mechanisms behind disease-associated leptin variants. J Biol Chem. 2018 Jun 27. PMID: 29950524.
      View in: PubMed
    3. Mittler R, Darash-Yahana M, Sohn YS, Bai F, Song L, Cabantchik IZ, Jennings PA, Onuchic JN, Nechushtai R. NEET Proteins: A New Link Between Iron Metabolism, Reactive Oxygen Species, and Cancer. Antioxid Redox Signal. 2018 Mar 29. PMID: 29463105.
      View in: PubMed
    4. Sengupta S, Nechushtai R, Jennings PA, Onuchic JN, Padilla PA, Azad RK, Mittler R. Phylogenetic analysis of the CDGSH iron-sulfur binding domain reveals its ancient origin. Sci Rep. 2018 Mar 19; 8(1):4840. PMID: 29556009.
      View in: PubMed
    5. Karmi O, Marjault HB, Pesce L, Carloni P, Onuchic JN, Jennings PA, Mittler R, Nechushtai R. The unique fold and lability of the [2Fe-2S] clusters of NEET proteins mediate their key functions in health and disease. J Biol Inorg Chem. 2018 Feb 12. PMID: 29435647.
      View in: PubMed
    6. Lipper CH, Karmi O, Sohn YS, Darash-Yahana M, Lammert H, Song L, Liu A, Mittler R, Nechushtai R, Onuchic JN, Jennings PA. Structure of the human monomeric NEET protein MiNT and its role in regulating iron and reactive oxygen species in cancer cells. Proc Natl Acad Sci U S A. 2018 Jan 09; 115(2):272-277. PMID: 29259115.
      View in: PubMed
    7. Pesce L, Calandrini V, Marjault HB, Lipper CH, Rossetti G, Mittler R, Jennings PA, Bauer A, Nechushtai R, Carloni P. Molecular Dynamics Simulations of the [2Fe-2S] Cluster-Binding Domain of NEET Proteins Reveal Key Molecular Determinants That Induce Their Cluster Transfer/Release. J Phys Chem B. 2017 11 30; 121(47):10648-10656. PMID: 29086562.
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    8. Katz DA, Harris A, Abenavoli R, Greenberg MT, Jennings PA. Educators' emotion regulation strategies and their physiological indicators of chronic stress over 1 year. Stress Health. 2018 Apr; 34(2):278-285. PMID: 28990329.
      View in: PubMed
    9. Aubol BE, Hailey KL, Fattet L, Jennings PA, Adams JA. Redirecting SR Protein Nuclear Trafficking through an Allosteric Platform. J Mol Biol. 2017 Jul 07; 429(14):2178-2191. PMID: 28576472.
      View in: PubMed
    10. Karmi O, Holt SH, Song L, Tamir S, Luo Y, Bai F, Adenwalla A, Darash-Yahana M, Sohn YS, Jennings PA, Azad RK, Onuchic JN, Morcos F, Nechushtai R, Mittler R. Interactions between mitoNEET and NAF-1 in cells. PLoS One. 2017; 12(4):e0175796. PMID: 28426722.
      View in: PubMed
    11. Burban DJ, Jennings PA. Backbone assignments for the SPOUT methyltransferase MTT Tm , a knotted protein from Thermotoga maritima. Biomol NMR Assign. 2017 Oct; 11(2):151-154. PMID: 28284017.
      View in: PubMed
    12. Inupakutika MA, Sengupta S, Nechushtai R, Jennings PA, Onuchic JN, Azad RK, Padilla P, Mittler R. Phylogenetic analysis of eukaryotic NEET proteins uncovers a link between a key gene duplication event and the evolution of vertebrates. Sci Rep. 2017 Feb 16; 7:42571. PMID: 28205535.
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    13. Haglund E, Pilko A, Wollman R, Jennings PA, Onuchic JN. Pierced Lasso Topology Controls Function in Leptin. J Phys Chem B. 2017 02 02; 121(4):706-718. PMID: 28035835.
      View in: PubMed
    14. Darash-Yahana M, Pozniak Y, Lu M, Sohn YS, Karmi O, Tamir S, Bai F, Song L, Jennings PA, Pikarsky E, Geiger T, Onuchic JN, Mittler R, Nechushtai R. Breast cancer tumorigenicity is dependent on high expression levels of NAF-1 and the lability of its Fe-S clusters. Proc Natl Acad Sci U S A. 2016 09 27; 113(39):10890-5. PMID: 27621439.
      View in: PubMed
    15. Yim KH, Prince TL, Qu S, Bai F, Jennings PA, Onuchic JN, Theodorakis EA, Neckers L. Gambogic acid identifies an isoform-specific druggable pocket in the middle domain of Hsp90ß. Proc Natl Acad Sci U S A. 2016 08 16; 113(33):E4801-9. PMID: 27466407; PMCID: PMC4995996 [Available on 02/16/17].
    16. Capraro DT, Jennings PA. Untangling the Influence of a Protein Knot on Folding. Biophys J. 2016 Mar 08; 110(5):1044-51. PMID: 26958882; PMCID: PMC4788744 [Available on 03/08/17].
    17. Fisher KM, Haglund E, Noel JK, Hailey KL, Onuchic JN, Jennings PA. Geometrical Frustration in Interleukin-33 Decouples the Dynamics of the Functional Element from the Folding Transition State Ensemble. PLoS One. 2015; 10(12):e0144067. PMID: 26630011.
      View in: PubMed
    18. Holt SH, Darash-Yahana M, Sohn YS, Song L, Karmi O, Tamir S, Michaeli D, Luo Y, Paddock ML, Jennings PA, Onuchic JN, Azad RK, Pikarsky E, Cabantchik IZ, Nechushtai R, Mittler R. Activation of apoptosis in NAF-1-deficient human epithelial breast cancer cells. J Cell Sci. 2016 Jan 01; 129(1):155-65. PMID: 26621032; PMCID: PMC4732299.
    19. Lipper CH, Paddock ML, Onuchic JN, Mittler R, Nechushtai R, Jennings PA. Cancer-Related NEET Proteins Transfer 2Fe-2S Clusters to Anamorsin, a Protein Required for Cytosolic Iron-Sulfur Cluster Biogenesis. PLoS One. 2015; 10(10):e0139699. PMID: 26448442; PMCID: PMC4598119.
    20. Keshwani MM, Hailey KL, Aubol BE, Fattet L, McGlone ML, Jennings PA, Adams JA. Nuclear protein kinase CLK1 uses a non-traditional docking mechanism to select physiological substrates. Biochem J. 2015 Dec 15; 472(3):329-38. PMID: 26443864.
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    21. Burban DJ, Haglund E, Capraro DT, Jennings PA. Heterogeneous side chain conformation highlights a network of interactions implicated in hysteresis of the knotted protein, minimal tied trefoil. J Phys Condens Matter. 2015 Sep 09; 27(35):354108. PMID: 26291198; PMCID: PMC4681393.
    22. Barkho S, Pierce LC, Li S, Adams JA, Jennings PA. Correction: Theoretical Insights Reveal Novel Motions in Csk's SH3 Domain That Control Kinase Activation. PLoS One. 2015; 10(7):e0133801. PMID: 26191813; PMCID: PMC4507846.
    23. Daniel KB, Sullivan ED, Chen Y, Chan JC, Jennings PA, Fierke CA, Cohen SM. Dual-Mode HDAC Prodrug for Covalent Modification and Subsequent Inhibitor Release. J Med Chem. 2015 Jun 11; 58(11):4812-21. PMID: 25974739; PMCID: PMC4467547.
    24. Barkho S, Pierce LC, Li S, Adams JA, Jennings PA. Theoretical Insights Reveal Novel Motions in Csk's SH3 Domain That Control Kinase Activation. PLoS One. 2015; 10(6):e0127724. PMID: 26030592; PMCID: PMC4452171.
    25. Bai F, Morcos F, Sohn YS, Darash-Yahana M, Rezende CO, Lipper CH, Paddock ML, Song L, Luo Y, Holt SH, Tamir S, Theodorakis EA, Jennings PA, Onuchic JN, Mittler R, Nechushtai R. The Fe-S cluster-containing NEET proteins mitoNEET and NAF-1 as chemotherapeutic targets in breast cancer. Proc Natl Acad Sci U S A. 2015 Mar 24; 112(12):3698-703. PMID: 25762074; PMCID: PMC4378444.
    26. Keshwani MM, Aubol BE, Fattet L, Ma CT, Qiu J, Jennings PA, Fu XD, Adams JA. Conserved proline-directed phosphorylation regulates SR protein conformation and splicing function. Biochem J. 2015 Mar 01; 466(2):311-22. PMID: 25529026.
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    27. Turan B, Foltz C, Cavanagh JF, Wallace BA, Cullen M, Rosenberg EL, Jennings PA, Ekman P, Kemeny ME. Anticipatory sensitization to repeated stressors: the role of initial cortisol reactivity and meditation/emotion skills training. Psychoneuroendocrinology. 2015 Feb; 52:229-38. PMID: 25497480.
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    28. Tamir S, Paddock ML, Darash-Yahana-Baram M, Holt SH, Sohn YS, Agranat L, Michaeli D, Stofleth JT, Lipper CH, Morcos F, Cabantchik IZ, Onuchic JN, Jennings PA, Mittler R, Nechushtai R. Structure-function analysis of NEET proteins uncovers their role as key regulators of iron and ROS homeostasis in health and disease. Biochim Biophys Acta. 2015 Jun; 1853(6):1294-315. PMID: 25448035.
      View in: PubMed
    29. Haglund E, Sulkowska JI, Noel JK, Lammert H, Onuchic JN, Jennings PA. Pierced Lasso Bundles are a new class of knot-like motifs. PLoS Comput Biol. 2014 Jun; 10(6):e1003613. PMID: 24945798; PMCID: PMC4063663.
    30. Tamir S, Eisenberg-Domovich Y, Conlan AR, Stofleth JT, Lipper CH, Paddock ML, Mittler R, Jennings PA, Livnah O, Nechushtai R. A point mutation in the [2Fe-2S] cluster binding region of the NAF-1 protein (H114C) dramatically hinders the cluster donor properties. Acta Crystallogr D Biol Crystallogr. 2014 Jun; 70(Pt 6):1572-8. PMID: 24914968; PMCID: PMC4051502.
    31. Tamir S, Rotem-Bamberger S, Katz C, Morcos F, Hailey KL, Zuris JA, Wang C, Conlan AR, Lipper CH, Paddock ML, Mittler R, Onuchic JN, Jennings PA, Friedler A, Nechushtai R. Integrated strategy reveals the protein interface between cancer targets Bcl-2 and NAF-1. Proc Natl Acad Sci U S A. 2014 Apr 08; 111(14):5177-82. PMID: 24706857; PMCID: PMC3986192.
    32. Xiang Z, Lacey VK, Ren H, Xu J, Burban DJ, Jennings PA, Wang L. Proximity-enabled protein crosslinking through genetically encoding haloalkane unnatural amino acids. Angew Chem Int Ed Engl. 2014 Feb 17; 53(8):2190-3. PMID: 24449339.
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    33. Jennings PA, Frank JL, Snowberg KE, Coccia MA, Greenberg MT. Improving classroom learning environments by Cultivating Awareness and Resilience in Education (CARE): results of a randomized controlled trial. Sch Psychol Q. 2013 Dec; 28(4):374-90. PMID: 24015983.
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    34. Barkho S, Pierce LC, McGlone ML, Li S, Woods VL, Walker RC, Adams JA, Jennings PA. Distal loop flexibility of a regulatory domain modulates dynamics and activity of C-terminal SRC kinase (csk). PLoS Comput Biol. 2013; 9(9):e1003188. PMID: 24039559; PMCID: PMC3764022.
    35. Capraro DT, Lammert H, Heidary DK, Roy M, Gross LA, Onuchic JN, Jennings PA. Altered backbone and side-chain interactions result in route heterogeneity during the folding of interleukin-1ß (IL-1ß). Biophys J. 2013 Aug 20; 105(4):975-83. PMID: 23972849; PMCID: PMC3752112.
    36. Sohn YS, Tamir S, Song L, Michaeli D, Matouk I, Conlan AR, Harir Y, Holt SH, Shulaev V, Paddock ML, Hochberg A, Cabanchick IZ, Onuchic JN, Jennings PA, Nechushtai R, Mittler R. NAF-1 and mitoNEET are central to human breast cancer proliferation by maintaining mitochondrial homeostasis and promoting tumor growth. Proc Natl Acad Sci U S A. 2013 Sep 03; 110(36):14676-81. PMID: 23959881; PMCID: PMC3767537.
    37. Tamir S, Zuris JA, Agranat L, Lipper CH, Conlan AR, Michaeli D, Harir Y, Paddock ML, Mittler R, Cabantchik ZI, Jennings PA, Nechushtai R. Nutrient-deprivation autophagy factor-1 (NAF-1): biochemical properties of a novel cellular target for anti-diabetic drugs. PLoS One. 2013; 8(5):e61202. PMID: 23717386; PMCID: PMC3661554.
    38. Hailey KL, Capraro DT, Barkho S, Jennings PA. Allosteric switching of agonist/antagonist activity by a single point mutation in the interluekin-1 receptor antagonist, IL-1Ra. J Mol Biol. 2013 Jul 10; 425(13):2382-92. PMID: 23499887; PMCID: PMC4059520.
    39. Onuchic JN, Jennings PA, Ben-Jacob E. Learning from cancer how to defeat bacteria. Proc Natl Acad Sci U S A. 2013 Feb 26; 110(9):3212-3. PMID: 23407166; PMCID: PMC3587203.
    40. Baxter EL, Zuris JA, Wang C, Vo PL, Axelrod HL, Cohen AE, Paddock ML, Nechushtai R, Onuchic JN, Jennings PA. Allosteric control in a metalloprotein dramatically alters function. Proc Natl Acad Sci U S A. 2013 Jan 15; 110(3):948-53. PMID: 23271805; PMCID: PMC3549116.
    41. Andrews BT, Capraro DT, Sulkowska JI, Onuchic JN, Jennings PA. Hysteresis as a Marker for Complex, Overlapping Landscapes in Proteins. J Phys Chem Lett. 2013 Jan 03; 4(1):180-188. PMID: 23525263.
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    42. Haglund E, Sulkowska JI, He Z, Feng GS, Jennings PA, Onuchic JN. The unique cysteine knot regulates the pleotropic hormone leptin. PLoS One. 2012; 7(9):e45654. PMID: 23029163; PMCID: PMC3454405.
    43. Jamros MA, Oliveira LC, Whitford PC, Onuchic JN, Adams JA, Jennings PA. Substrate-specific reorganization of the conformational ensemble of CSK implicates novel modes of kinase function. PLoS Comput Biol. 2012; 8(9):e1002695. PMID: 23028292; PMCID: PMC3447962.
    44. Capraro DT, Gosavi S, Roy M, Onuchic JN, Jennings PA. Folding circular permutants of IL-1ß: route selection driven by functional frustration. PLoS One. 2012; 7(6):e38512. PMID: 22693643; PMCID: PMC3367917.
    45. Nechushtai R, Conlan AR, Harir Y, Song L, Yogev O, Eisenberg-Domovich Y, Livnah O, Michaeli D, Rosen R, Ma V, Luo Y, Zuris JA, Paddock ML, Cabantchik ZI, Jennings PA, Mittler R. Characterization of Arabidopsis NEET reveals an ancient role for NEET proteins in iron metabolism. Plant Cell. 2012 May; 24(5):2139-54. PMID: 22562611; PMCID: PMC3442592.
    46. Zuris JA, Ali SS, Yeh H, Nguyen TA, Nechushtai R, Paddock ML, Jennings PA. NADPH inhibits [2Fe-2S] cluster protein transfer from diabetes drug target MitoNEET to an apo-acceptor protein. J Biol Chem. 2012 Apr 06; 287(15):11649-55. PMID: 22351774; PMCID: PMC3320914.
    47. Abrahamsen H, O'Neill AK, Kannan N, Kruse N, Taylor SS, Jennings PA, Newton AC. Peptidyl-prolyl isomerase Pin1 controls down-regulation of conventional protein kinase C isozymes. J Biol Chem. 2012 Apr 13; 287(16):13262-78. PMID: 22318721; PMCID: PMC3339987.
    48. Baxter EL, Jennings PA, Onuchic JN. Strand swapping regulates the iron-sulfur cluster in the diabetes drug target mitoNEET. Proc Natl Acad Sci U S A. 2012 Feb 07; 109(6):1955-60. PMID: 22308404; PMCID: PMC3277509.
    49. Capraro DT, Roy M, Onuchic JN, Gosavi S, Jennings PA. ß-Bulge triggers route-switching on the functional landscape of interleukin-1ß. Proc Natl Acad Sci U S A. 2012 Jan 31; 109(5):1490-3. PMID: 22307602; PMCID: PMC3277114.
    50. Broderick PC, Jennings PA. Mindfulness for adolescents: a promising approach to supporting emotion regulation and preventing risky behavior. New Dir Youth Dev. 2012; 2012(136):111-26, 11. PMID: 23359447.
      View in: PubMed
    51. Kemeny ME, Foltz C, Cavanagh JF, Cullen M, Giese-Davis J, Jennings P, Rosenberg EL, Gillath O, Shaver PR, Wallace BA, Ekman P. Contemplative/emotion training reduces negative emotional behavior and promotes prosocial responses. Emotion. 2012 Apr; 12(2):338-50. PMID: 22148989.
      View in: PubMed
    52. Zuris JA, Harir Y, Conlan AR, Shvartsman M, Michaeli D, Tamir S, Paddock ML, Onuchic JN, Mittler R, Cabantchik ZI, Jennings PA, Nechushtai R. Facile transfer of [2Fe-2S] clusters from the diabetes drug target mitoNEET to an apo-acceptor protein. Proc Natl Acad Sci U S A. 2011 Aug 09; 108(32):13047-52. PMID: 21788481; PMCID: PMC3156153.
    53. Conlan AR, Paddock ML, Homer C, Axelrod HL, Cohen AE, Abresch EC, Zuris JA, Nechushtai R, Jennings PA. Mutation of the His ligand in mitoNEET stabilizes the 2Fe-2S cluster despite conformational heterogeneity in the ligand environment. Acta Crystallogr D Biol Crystallogr. 2011 Jun; 67(Pt 6):516-23. PMID: 21636891; PMCID: PMC3107049.
    54. Plocinik RM, Li S, Liu T, Hailey KL, Whitesides J, Whitehouse J, Ma CT, Fu XD, Gosh G, Woods VL, Jennings PA, Adams JA. Regulating SR protein phosphorylation through regions outside the kinase domain of SRPK1. J Mol Biol. 2011 Jul 01; 410(1):131-45. PMID: 21600902; PMCID: PMC3121894.
    55. Baxter EL, Jennings PA, Onuchic JN. Interdomain communication revealed in the diabetes drug target mitoNEET. Proc Natl Acad Sci U S A. 2011 Mar 29; 108(13):5266-71. PMID: 21402934; PMCID: PMC3069162.
    56. Nechushtai R, Lammert H, Michaeli D, Eisenberg-Domovich Y, Zuris JA, Luca MA, Capraro DT, Fish A, Shimshon O, Roy M, Schug A, Whitford PC, Livnah O, Onuchic JN, Jennings PA. Allostery in the ferredoxin protein motif does not involve a conformational switch. Proc Natl Acad Sci U S A. 2011 Feb 08; 108(6):2240-5. PMID: 21266547; PMCID: PMC3038707.
    57. Zuris JA, Halim DA, Conlan AR, Abresch EC, Nechushtai R, Paddock ML, Jennings PA. Engineering the redox potential over a wide range within a new class of FeS proteins. J Am Chem Soc. 2010 Sep 29; 132(38):13120-2. PMID: 20812736; PMCID: PMC2944382.
    58. Jamros MA, Oliveira LC, Whitford PC, Onuchic JN, Adams JA, Blumenthal DK, Jennings PA. Proteins at work: a combined small angle X-RAY scattering and theoretical determination of the multiple structures involved on the protein kinase functional landscape. J Biol Chem. 2010 Nov 12; 285(46):36121-8. PMID: 20801888; PMCID: PMC2975234.
    59. Plesniak LA, Salzameda B, Hinderberger H, Regan E, Kahn J, Mills SA, Teriete P, Yao Y, Jennings P, Marassi F, Adams JA. Structure and activity of CPNGRC: a modified CD13/APN peptidic homing motif. Chem Biol Drug Des. 2010 Jun; 75(6):551-62. PMID: 20374250; PMCID: PMC2890305.
    60. Dicus MM, Conlan A, Nechushtai R, Jennings PA, Paddock ML, Britt RD, Stoll S. Binding of histidine in the (Cys)3(His)1-coordinated [2Fe-2S] cluster of human mitoNEET. J Am Chem Soc. 2010 Feb 17; 132(6):2037-49. PMID: 20099820; PMCID: PMC2820139.
    61. Bak DW, Zuris JA, Paddock ML, Jennings PA, Elliott SJ. Redox characterization of the FeS protein MitoNEET and impact of thiazolidinedione drug binding. Biochemistry. 2009 Nov 03; 48(43):10193-5. PMID: 19791753; PMCID: PMC3322619.
    62. Hailey KL, Li S, Andersen MD, Roy M, Woods VL, Jennings PA. Pro-interleukin (IL)-1beta shares a core region of stability as compared with mature IL-1beta while maintaining a distinctly different configurational landscape: a comparative hydrogen/deuterium exchange mass spectrometry study. J Biol Chem. 2009 Sep 18; 284(38):26137-48. PMID: 19592498; PMCID: PMC2758013.
    63. Conlan AR, Axelrod HL, Cohen AE, Abresch EC, Zuris J, Yee D, Nechushtai R, Jennings PA, Paddock ML. Crystal structure of Miner1: The redox-active 2Fe-2S protein causative in Wolfram Syndrome 2. J Mol Biol. 2009 Sep 11; 392(1):143-53. PMID: 19580816; PMCID: PMC2739586.
    64. Andrews BT, Roy M, Jennings PA. Chromophore packing leads to hysteresis in GFP. J Mol Biol. 2009 Sep 11; 392(1):218-27. PMID: 19577576; PMCID: PMC3566660.
    65. Conlan AR, Paddock ML, Axelrod HL, Cohen AE, Abresch EC, Wiley S, Roy M, Nechushtai R, Jennings PA. The novel 2Fe-2S outer mitochondrial protein mitoNEET displays conformational flexibility in its N-terminal cytoplasmic tethering domain. Acta Crystallogr Sect F Struct Biol Cryst Commun. 2009 Jul 01; 65(Pt 7):654-9. PMID: 19574633; PMCID: PMC2705628.
    66. Tirrell TF, Paddock ML, Conlan AR, Smoll EJ, Nechushtai R, Jennings PA, Kim JE. Resonance Raman studies of the (His)(Cys)3 2Fe-2S cluster of MitoNEET: comparison to the (Cys)4 mutant and implications of the effects of pH on the labile metal center. Biochemistry. 2009 Jun 09; 48(22):4747-52. PMID: 19388667; PMCID: PMC2861891.
    67. Hyeon C, Jennings PA, Adams JA, Onuchic JN. Ligand-induced global transitions in the catalytic domain of protein kinase A. Proc Natl Acad Sci U S A. 2009 Mar 03; 106(9):3023-8. PMID: 19204278; PMCID: PMC2651249.
    68. Capraro DT, Roy M, Onuchic JN, Jennings PA. Backtracking on the folding landscape of the beta-trefoil protein interleukin-1beta? Proc Natl Acad Sci U S A. 2008 Sep 30; 105(39):14844-8. PMID: 18806223; PMCID: PMC2567455.
    69. Andrews BT, Gosavi S, Finke JM, Onuchic JN, Jennings PA. The dual-basin landscape in GFP folding. Proc Natl Acad Sci U S A. 2008 Aug 26; 105(34):12283-8. PMID: 18713871; PMCID: PMC2527903.
    70. Hagopian JC, Ma CT, Meade BR, Albuquerque CP, Ngo JC, Ghosh G, Jennings PA, Fu XD, Adams JA. Adaptable molecular interactions guide phosphorylation of the SR protein ASF/SF2 by SRPK1. J Mol Biol. 2008 Oct 17; 382(4):894-909. PMID: 18687337; PMCID: PMC2741138.
    71. Gosavi S, Whitford PC, Jennings PA, Onuchic JN. Extracting function from a beta-trefoil folding motif. Proc Natl Acad Sci U S A. 2008 Jul 29; 105(30):10384-9. PMID: 18650393; PMCID: PMC2492465.
    72. Jennings PA. Contemplative education and youth development. New Dir Youth Dev. 2008; 2008(118):101-5, 9. PMID: 18642301.
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    73. Plesniak LA, Botsch K, Leibrand M, Kelly M, Sem D, Adams JA, Jennings P. Transferred NOE and saturation transfer difference NMR studies of novobiocin binding to EnvZ suggest binding mode similar to DNA gyrase. Chem Biol Drug Des. 2008 Jan; 71(1):28-35. PMID: 18093089.
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    74. Paddock ML, Wiley SE, Axelrod HL, Cohen AE, Roy M, Abresch EC, Capraro D, Murphy AN, Nechushtai R, Dixon JE, Jennings PA. MitoNEET is a uniquely folded 2Fe 2S outer mitochondrial membrane protein stabilized by pioglitazone. Proc Natl Acad Sci U S A. 2007 Sep 04; 104(36):14342-7. PMID: 17766440; PMCID: PMC1963346.
    75. Andrews BT, Schoenfish AR, Roy M, Waldo G, Jennings PA. The rough energy landscape of superfolder GFP is linked to the chromophore. J Mol Biol. 2007 Oct 19; 373(2):476-90. PMID: 17822714; PMCID: PMC2695656.
    76. Wiley SE, Paddock ML, Abresch EC, Gross L, van der Geer P, Nechushtai R, Murphy AN, Jennings PA, Dixon JE. The outer mitochondrial membrane protein mitoNEET contains a novel redox-active 2Fe-2S cluster. J Biol Chem. 2007 Aug 17; 282(33):23745-9. PMID: 17584744.
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    77. Finke JM, Jennings PA, Lee JC, Onuchic JN, Winkler JR. Equilibrium unfolding of the poly(glutamic acid)20 helix. Biopolymers. 2007 Jun 15; 86(3):193-211. PMID: 17370320.
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    78. Kinderman FS, Kim C, von Daake S, Ma Y, Pham BQ, Spraggon G, Xuong NH, Jennings PA, Taylor SS. A dynamic mechanism for AKAP binding to RII isoforms of cAMP-dependent protein kinase. Mol Cell. 2006 Nov 03; 24(3):397-408. PMID: 17081990; PMCID: PMC1855097.
    79. Mills JE, Whitford PC, Shaffer J, Onuchic JN, Adams JA, Jennings PA. A novel disulfide bond in the SH2 Domain of the C-terminal Src kinase controls catalytic activity. J Mol Biol. 2007 Feb 02; 365(5):1460-8. PMID: 17137590; PMCID: PMC2741090.
    80. Onuchic JN, Kobayashi C, Miyashita O, Jennings P, Baldridge KK. Exploring biomolecular machines: energy landscape control of biological reactions. Philos Trans R Soc Lond B Biol Sci. 2006 Aug 29; 361(1472):1439-43. PMID: 16873130; PMCID: PMC1647308.
    81. Chavez LL, Gosavi S, Jennings PA, Onuchic JN. Multiple routes lead to the native state in the energy landscape of the beta-trefoil family. Proc Natl Acad Sci U S A. 2006 Jul 05; 103(27):10254-10258. PMID: 16801558.
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    82. Sandoval CM, Geierstanger BH, Fujimura S, Balatbat C, Williams T, de Unamuno J, Whiles-Lillig JA, Ellerby LM, Ellerby HM, Jennings P, Plesniak LA. Structural evaluation of a novel pro-apoptotic peptide coupled to CNGRC tumor homing sequence by NMR. Chem Biol Drug Des. 2006 Jun; 67(6):417-24. PMID: 16882316.
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    83. Gosavi S, Chavez LL, Jennings PA, Onuchic JN. Topological frustration and the folding of interleukin-1 beta. J Mol Biol. 2006 Mar 31; 357(3):986-96. PMID: 16469330.
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    84. Burns-Hamuro LL, Hamuro Y, Kim JS, Sigala P, Fayos R, Stranz DD, Jennings PA, Taylor SS, Woods VL. Distinct interaction modes of an AKAP bound to two regulatory subunit isoforms of protein kinase A revealed by amide hydrogen/deuterium exchange. Protein Sci. 2005 Dec; 14(12):2982-92. PMID: 16260760; PMCID: PMC2253242.
    85. Heidary DK, Roy M, Daumy GO, Cong Y, Jennings PA. Long-range coupling between separate docking sites in interleukin-1beta. J Mol Biol. 2005 Nov 11; 353(5):1187-98. PMID: 16216268.
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    86. Lieser SA, Aubol BE, Wong L, Jennings PA, Adams JA. Coupling phosphoryl transfer and substrate interactions in protein kinases. Biochim Biophys Acta. 2005 Dec 30; 1754(1-2):191-9. PMID: 16213199.
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    87. Wong L, Lieser SA, Miyashita O, Miller M, Tasken K, Onuchic JN, Adams JA, Woods VL, Jennings PA. Coupled motions in the SH2 and kinase domains of Csk control Src phosphorylation. J Mol Biol. 2005 Aug 05; 351(1):131-43. PMID: 16002086.
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    88. Covalt JC, Cao TB, Magdaroag JR, Gross LA, Jennings PA. Temperature, media, and point of induction affect the N-terminal processing of interleukin-1beta. Protein Expr Purif. 2005 May; 41(1):45-52. PMID: 15802220.
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    89. Roy M, Chavez LL, Finke JM, Heidary DK, Onuchic JN, Jennings PA. The native energy landscape for interleukin-1beta. Modulation of the population ensemble through native-state topology. J Mol Biol. 2005 Apr 29; 348(2):335-47. PMID: 15811372.
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    90. Wriggers W, Chakravarty S, Jennings PA. Control of protein functional dynamics by peptide linkers. Biopolymers. 2005; 80(6):736-46. PMID: 15880774.
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    91. Levenson MR, Jennings PA, Aldwin CM, Shiraishi RW. Self-transcendence: conceptualization and measurement. Int J Aging Hum Dev. 2005; 60(2):127-43. PMID: 15801386.
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    92. Jiang T, Olson ES, Nguyen QT, Roy M, Jennings PA, Tsien RY. Tumor imaging by means of proteolytic activation of cell-penetrating peptides. Proc Natl Acad Sci U S A. 2004 Dec 21; 101(51):17867-72. PMID: 15601762; PMCID: PMC539314.
    93. Rodríguez JC, Jennings PA, Melacini G. Using chemical exchange to assign non-covalent protein complexes in slow exchange with the free state: enhanced resolution and efficient signal editing. J Biomol NMR. 2004 Oct; 30(2):155-61. PMID: 15557802.
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    94. Plesniak LA, Parducho JI, Ziebart A, Geierstanger BH, Whiles JA, Melacini G, Jennings PA. Orientation and helical conformation of a tissue-specific hunter-killer peptide in micelles. Protein Sci. 2004 Aug; 13(8):1988-96. PMID: 15273301; PMCID: PMC2279830.
    95. Wong L, Lieser S, Chie-Leon B, Miyashita O, Aubol B, Shaffer J, Onuchic JN, Jennings PA, Woods VL, Adams JA. Dynamic coupling between the SH2 domain and active site of the COOH terminal Src kinase, Csk. J Mol Biol. 2004 Jul 30; 341(1):93-106. PMID: 15312765.
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    96. Wong L, Jennings PA, Adams JA. Communication pathways between the nucleotide pocket and distal regulatory sites in protein kinases. Acc Chem Res. 2004 May; 37(5):304-11. PMID: 15147171.
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    97. Morikis D, Elcock AH, Jennings PA, McCammon JA. The pH dependence of stability of the activation helix and the catalytic site of GART. Biophys Chem. 2003 Sep; 105(2-3):279-91. PMID: 14499900.
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    98. Banky P, Roy M, Newlon MG, Morikis D, Haste NM, Taylor SS, Jennings PA. Related protein-protein interaction modules present drastically different surface topographies despite a conserved helical platform. J Mol Biol. 2003 Jul 25; 330(5):1117-29. PMID: 12860132.
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    99. Roy M, Jennings PA. Real-time NMR kinetic studies provide global and residue-specific information on the non-cooperative unfolding of the beta-trefoil protein, interleukin-1beta. J Mol Biol. 2003 May 02; 328(3):693-703. PMID: 12706726.
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    100. Alto NM, Soderling SH, Hoshi N, Langeberg LK, Fayos R, Jennings PA, Scott JD. Bioinformatic design of A-kinase anchoring protein-in silico: a potent and selective peptide antagonist of type II protein kinase A anchoring. Proc Natl Acad Sci U S A. 2003 Apr 15; 100(8):4445-50. PMID: 12672969; PMCID: PMC153575.
    101. Rodríguez JC, Wong L, Jennings PA. The solvent in CNBr cleavage reactions determines the fragmentation efficiency of ketosteroid isomerase fusion proteins used in the production of recombinant peptides. Protein Expr Purif. 2003 Apr; 28(2):224-31. PMID: 12699685.
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    102. Fayos R, Melacini G, Newlon MG, Burns L, Scott JD, Jennings PA. Induction of flexibility through protein-protein interactions. J Biol Chem. 2003 May 16; 278(20):18581-7. PMID: 12604595.
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    103. Rudolph MG, Kelker MS, Schneider TR, Yeates TO, Oseroff V, Heidary DK, Jennings PA, Wilson IA. Use of multiple anomalous dispersion to phase highly merohedrally twinned crystals of interleukin-1beta. Acta Crystallogr D Biol Crystallogr. 2003 Feb; 59(Pt 2):290-8. PMID: 12554939.
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    104. Finke JM, Jennings PA. Interleukin-1 beta folding between pH 5 and 7: experimental evidence for three-state folding behavior and robust transition state positions late in folding. Biochemistry. 2002 Dec 17; 41(50):15056-67. PMID: 12475255.
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    105. Plesniak L, Horiuchi Y, Sem D, Meinenger D, Stiles L, Shaffer J, Jennings PA, Adams JA. Probing the nucleotide binding domain of the osmoregulator EnvZ using fluorescent nucleotide derivatives. Biochemistry. 2002 Nov 26; 41(47):13876-82. PMID: 12437344.
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    106. Hamuro Y, Wong L, Shaffer J, Kim JS, Stranz DD, Jennings PA, Woods VL, Adams JA. Phosphorylation driven motions in the COOH-terminal Src kinase, CSK, revealed through enhanced hydrogen-deuterium exchange and mass spectrometry (DXMS). J Mol Biol. 2002 Nov 08; 323(5):871-81. PMID: 12417200.
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    107. Rodríguez JC, Jennings PA, Melacini G. Effect of chemical exchange on radiation damping in aqueous solutions of the osmolyte glycine. J Am Chem Soc. 2002 Jun 05; 124(22):6240-1. PMID: 12033843.
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    108. Morikis D, Roy M, Newlon MG, Scott JD, Jennings PA. Electrostatic properties of the structure of the docking and dimerization domain of protein kinase A IIalpha. Eur J Biochem. 2002 Apr; 269(8):2040-51. PMID: 11985580.
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    109. Heidary DK, Jennings PA. Three topologically equivalent core residues affect the transition state ensemble in a protein folding reaction. J Mol Biol. 2002 Feb 22; 316(3):789-98. PMID: 11866531.
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    110. Morikis D, Roy M, Sahu A, Troganis A, Jennings PA, Tsokos GC, Lambris JD. The structural basis of compstatin activity examined by structure-function-based design of peptide analogs and NMR. J Biol Chem. 2002 Apr 26; 277(17):14942-53. PMID: 11847226.
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