Judy Kim

Title(s)Professor, Chemistry and Biochemistry
SchoolVc-academic Affairs
Address9500 Gilman Drive #
La Jolla CA 92093
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    1. Intraocular Pressure Outcomes After Lampalizumab Injections in Patients With Geographic Atrophy. JAMA Ophthalmol. 2024 Jun 20. Bressler NM, Freund KB, Bakri SJ, Kim JE, Ferrara D, Brittain C, Pickthorn K, Lin H, Sun C, Martin J. PMID: 38900484; PMCID: PMC11190824.
      View in: PubMed   Mentions:    Fields:    
    2. Generative Artificial Intelligence Through ChatGPT and Other Large Language Models in Ophthalmology: Clinical Applications and Challenges. Ophthalmol Sci. 2023 Dec; 3(4):100394. Tan TF, Thirunavukarasu AJ, Campbell JP, Keane PA, Pasquale LR, Abramoff MD, Kalpathy-Cramer J, Lum F, Kim JE, Baxter SL, Ting DSW. PMID: 37885755; PMCID: PMC10598525.
      View in: PubMed   Mentions: 2  
    3. Artificial Intelligence for Visual Acuity-Gaps From Algorithm to Actualization. JAMA Ophthalmol. 2023 07 01; 141(7):685-686. Baxter SL, Kim JE. PMID: 37289473.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    4. Electrochemical and Structural Study of the Buried Tryptophan in Azurin: Effects of Hydration and Polarity on the Redox Potential of W48. J Phys Chem B. 2023 01 12; 127(1):133-143. Tyson K, Tangtartharakul CB, Zeug M, Findling N, Haddy A, Hvastkovs E, Choe JY, Kim JE, Offenbacher AR. PMID: 36542812; PMCID: PMC9841983.
      View in: PubMed   Mentions:    Fields:    Translation:Cells
    5. Photoinduced Electron Transfer from the Tryptophan Triplet State in Zn-Azurin. ACS Phys Chem Au. 2023 Jan 25; 3(1):63-73. Rivera JJ, Trinh C, Kim JE. PMID: 36718260; PMCID: PMC9881450.
      View in: PubMed   Mentions:
    6. Role of the Triplet State and Protein Dynamics in the Formation and Stability of the Tryptophan Radical in an Apoazurin Mutant. J Phys Chem B. 2022 09 15; 126(36):6751-6761. López-Peña I, Lee CT, Rivera JJ, Kim JE. PMID: 35977067; PMCID: PMC9483921.
      View in: PubMed   Mentions: 2     Fields:    
    7. Corrigendum to "Bimolecular quenching of tryptophan fluorescence in a membrane protein: Evolution of local solvation and environment during folding into a bilayer" [Spectrochim. Acta Part A: Mol. Biomol. Spectrosc. 260 (2021) 119919]. Spectrochim Acta A Mol Biomol Spectrosc. 2022 Jun 05; 274:121093. Asamoto DK, Kozachenko IA, López-Peña I, Kim JE. PMID: 35305521.
      View in: PubMed   Mentions:    Fields:    
    8. Macular Fluid in a Patient With a Reported History of Normal-Tension Glaucoma. JAMA Ophthalmol. 2022 03 01; 140(3):278-279. Hwang ES, Zolot AB, Kim JE. PMID: 34989766.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    9. When the N Is 65 Million-The Rise of Database Research. JAMA Ophthalmol. 2021 Jun 17. Weng CY, Kim JE. PMID: 34137785.
      View in: PubMed   Mentions: 1     Fields:    
    10. Bimolecular quenching of tryptophan fluorescence in a membrane protein: Evolution of local solvation and environment during folding into a bilayer. Spectrochim Acta A Mol Biomol Spectrosc. 2021 Nov 05; 260:119919. Asamoto DK, Kozachenko IA, López-Peña I, Kim JE. PMID: 34004426.
      View in: PubMed   Mentions: 1     Fields:    Translation:Cells
    11. Treatment for a Subtype of Exudative Macular Degeneration-Another Mountain Climbed. JAMA Ophthalmol. 2020 09 01; 138(9):942-944. Kokame GT, Kim JE. PMID: 32672808.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    12. The structural basis for monoclonal antibody 5D2 binding to the tryptophan-rich loop of lipoprotein lipase. J Lipid Res. 2020 10; 61(10):1347-1359. Luz JG, Beigneux AP, Asamoto DK, He C, Song W, Allan CM, Morales J, Tu Y, Kwok A, Cottle T, Meiyappan M, Fong LG, Kim JE, Ploug M, Young SG, Birrane G. PMID: 32690595; PMCID: PMC7529051.
      View in: PubMed   Mentions: 5     Fields:    Translation:HumansAnimalsCells
    13. Folding of the β-Barrel Membrane Protein OmpA into Nanodiscs. Biophys J. 2020 01 21; 118(2):403-414. Asamoto DK, Kang G, Kim JE. PMID: 31843264; PMCID: PMC6976806.
      View in: PubMed   Mentions: 2     Fields:    Translation:Cells
    14. Raman and Quantum Yield Studies of Trp48-d5 in Azurin: Closed-Shell and Neutral Radical Species. J Phys Chem B. 2019 08 01; 123(30):6430-6443. Rivera JJ, Liang JH, Shimamura GR, Shafaat HS, Kim JE. PMID: 31313925.
      View in: PubMed   Mentions: 2     Fields:    Translation:Cells
    15. Fundus Hypopigmentation and Loss of Choroidal Nevi Pigmentation Associated With Nivolumab. JAMA Ophthalmol. 2019 Jul 01; 137(7):851-853. Sophie R, Moses GM, Hwang ES, Kim JE. PMID: 31070667.
      View in: PubMed   Mentions: 1     Fields:    Translation:Humans
    16. Diagnosing Polypoidal Choroidal Vasculopathy Without Indocyanine Green Angiography. JAMA Ophthalmol. 2019 06 01; 137(6):667-668. Cheung CMG, Kim JE. PMID: 30973591.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    17. UV Resonance Raman Spectroscopy as a Tool to Probe Membrane Protein Structure and Dynamics. Methods Mol Biol. 2019; 2003:327-349. Asamoto DK, Kim JE. PMID: 31218624; PMCID: PMC6874512.
      View in: PubMed   Mentions: 3     Fields:    
    18. EFFECTIVENESS OF DIFFERENT MONITORING MODALITIES IN THE DETECTION OF NEOVASCULAR AGE-RELATED MACULAR DEGENERATION: The Home Study, Report Number 3. Retina. 2016 Aug; 36(8):1542-7. Chew EY, Clemons TE, Harrington M, Bressler SB, Elman MJ, Kim JE, Garfinkel R, Heier JS, Brucker A, Boyer D, AREDS2-HOME Study Research Group. PMID: 27243927; PMCID: PMC4961546.
      View in: PubMed   Mentions: 11     Fields:    Translation:Humans
    19. Update on Screening Recommendations for Hydroxychloroquine Retinopathy. JAMA Ophthalmol. 2016 07 01; 134(7):849. Kim JE, Marmor MF. PMID: 27258704.
      View in: PubMed   Mentions: 1     Fields:    Translation:Humans
    20. Which Test Is the Best for Hydroxychloroquine Toxicity Screening? JAMA Ophthalmol. 2016 May 01; 134(5):520-521. Kim JE. PMID: 26987043.
      View in: PubMed   Mentions:    Fields:    
    21. Comparison of Aflibercept, Bevacizumab, and Ranibizumab for Treatment of Diabetic Macular Edema: Extrapolation of Data to Clinical Practice. JAMA Ophthalmol. 2016 Jan; 134(1):95-9. Heier JS, Bressler NM, Avery RL, Bakri SJ, Boyer DS, Brown DM, Dugel PU, Freund KB, Glassman AR, Kim JE, Martin DF, Pollack JS, Regillo CD, Rosenfeld PJ, Schachat AP, Wells JA, American Society of Retina Specialists Anti-VEGF for Diabetic Macular Edema Comparative Effectivenes. PMID: 26512939.
      View in: PubMed   Mentions: 44     Fields:    Translation:Humans
    22. Insights into Protein Structure and Dynamics by Ultraviolet and Visible Resonance Raman Spectroscopy. Biochemistry. 2015 Aug 11; 54(31):4770-83. López-Peña I, Leigh BS, Schlamadinger DE, Kim JE. PMID: 26219819; PMCID: PMC5092233.
      View in: PubMed   Mentions: 4     Fields:    Translation:AnimalsCells
    23. Unilateral Perivascular Infiltrates in Lupus Retinopathy. JAMA Ophthalmol. 2015 Jun; 133(6):e145367. Warren CC, Gendy MG, Kim JE. PMID: 26067692.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    24. SAFETY PROFILE OF OCRIPLASMIN FOR SYMPTOMATIC VITREOMACULAR ADHESION: A Comprehensive Analysis of Premarketing and Postmarketing Experiences. Retina. 2015 Jun; 35(6):1128-34. Hahn P, Chung MM, Flynn HW, Huang SS, Kim JE, Mahmoud TH, Sadda SR, Dugel PU. PMID: 25635575.
      View in: PubMed   Mentions: 22     Fields:    Translation:HumansCells
    25. Repeated intravitreous ranibizumab injections for diabetic macular edema and the risk of sustained elevation of intraocular pressure or the need for ocular hypotensive treatment. JAMA Ophthalmol. 2015 May; 133(5):589-97. Bressler SB, Almukhtar T, Bhorade A, Bressler NM, Glassman AR, Huang SS, Jampol LM, Kim JE, Melia M, Diabetic Retinopathy Clinical Research Network Investigators. PMID: 25719991; PMCID: PMC4496789.
      View in: PubMed   Mentions: 31     Fields:    Translation:HumansCTClinical Trials
    26. Postmarketing analysis of aflibercept-related sterile intraocular inflammation. JAMA Ophthalmol. 2015 Apr; 133(4):421-6. Hahn P, Chung MM, Flynn HW, Huang SS, Kim JE, Mahmoud TH, Sadda SR, Dugel PU. PMID: 25590968.
      View in: PubMed   Mentions: 24     Fields:    Translation:Humans
    27. Photogeneration and Quenching of Tryptophan Radical in Azurin. J Phys Chem B. 2015 Jul 23; 119(29):9438-49. Larson BC, Pomponio JR, Shafaat HS, Kim RH, Leigh BS, Tauber MJ, Kim JE. PMID: 25625660; PMCID: PMC5092234.
      View in: PubMed   Mentions: 8     Fields:    Translation:Cells
    28. Resonance Raman Analysis of the Tryptophan Cation Radical. J Phys Chem Lett. 2014 Sep 04; 5(17):3009-14. Shafaat HS, Kim JE. PMID: 26278252.
      View in: PubMed   Mentions: 3     Fields:    
    29. Safety and complications of ocriplasmin: ocriplasmin, ocriplasmin; oh, how safe art thou? JAMA Ophthalmol. 2014 Apr 01; 132(4):379-80. Kim JE. PMID: 24577332.
      View in: PubMed   Mentions: 10     Fields:    Translation:Humans
    30. Management of persistent subretinal fluid following retinal detachment repair. JAMA Ophthalmol. 2013 Sep; 131(9):1240-4. Reichstein DA, Larsen BP, Kim JE. PMID: 24030339.
      View in: PubMed   Mentions: 4     Fields:    Translation:Humans
    31. UV resonance Raman study of TrpZip2 and related peptides: π-π interactions of tryptophan. J Raman Spectrosc. 2012 Oct; 43(10):1459-1464. Schlamadinger DE, Leigh BS, Kim JE. PMID: 25525290; PMCID: PMC4267580.
      View in: PubMed   Mentions: 2  
    32. Spectroscopic and computational study of melittin, cecropin A, and the hybrid peptide CM15. J Phys Chem B. 2012 Sep 06; 116(35):10600-8. Schlamadinger DE, Wang Y, McCammon JA, Kim JE. PMID: 22845179; PMCID: PMC3434763.
      View in: PubMed   Mentions: 12     Fields:    Translation:Cells
    33. Comparative molecular dynamics simulations of the antimicrobial peptide CM15 in model lipid bilayers. Biochim Biophys Acta. 2012 May; 1818(5):1402-9. Wang Y, Schlamadinger DE, Kim JE, McCammon JA. PMID: 22387432; PMCID: PMC3329965.
      View in: PubMed   Mentions: 37     Fields:    Translation:Cells
    34. Hydrogen bonding of tryptophan radicals revealed by EPR at 700 GHz. J Am Chem Soc. 2011 Nov 16; 133(45):18098-101. Stoll S, Shafaat HS, Krzystek J, Ozarowski A, Tauber MJ, Kim JE, Britt RD. PMID: 22007694; PMCID: PMC3251908.
      View in: PubMed   Mentions: 21     Fields:    Translation:Cells
    35. Förster resonance energy transfer as a probe of membrane protein folding. Biochim Biophys Acta. 2012 Feb; 1818(2):154-61. Kang G, López-Peña I, Oklejas V, Gary CS, Cao W, Kim JE. PMID: 21925139; PMCID: PMC3253952.
      View in: PubMed   Mentions: 6     Fields:    Translation:Cells
    36. Using charge to control the functional properties of self-assembled nanopores in membranes. Small. 2011 Jul 18; 7(14):2016-20. Macrae MX, Schlamadinger D, Kim JE, Mayer M, Yang J. PMID: 21626687.
      View in: PubMed   Mentions:    Fields:    
    37. Tryptophan-lipid interactions in membrane protein folding probed by ultraviolet resonance Raman and fluorescence spectroscopy. Biophys J. 2011 May 04; 100(9):2121-30. Sanchez KM, Kang G, Wu B, Kim JE. PMID: 21539779; PMCID: PMC3149241.
      View in: PubMed   Mentions: 35     Fields:    Translation:Cells
    38. Thermodynamics of membrane protein folding measured by fluorescence spectroscopy. J Vis Exp. 2011 Apr 28; (50). Schlamadinger DE, Kim JE. PMID: 21559004; PMCID: PMC3169287.
      View in: PubMed   Mentions: 1     Fields:    Translation:Cells
    39. UV resonance Raman study of cation-π interactions in an indole crown ether. J Raman Spectrosc. 2011 Apr; 42(4):633-638. Schlamadinger DE, Daschbach MM, Gokel GW, Kim JE. PMID: 25635155; PMCID: PMC4307609.
      View in: PubMed   Mentions: 6  
    40. Quenching of TryptophanFluorescence in Unfolded Cytochrome c: A Biophysics Experiment for Physical Chemistry Students. J Chem Educ. 2010 Sep 01; 87(9):961-964. Schlamadinger DE, Kats DI, Kim JE. PMID: 25593364; PMCID: PMC4292842.
      View in: PubMed   Mentions: 6     Fields:    
    41. Spectroscopic comparison of photogenerated tryptophan radicals in azurin: effects of local environment and structure. J Am Chem Soc. 2010 Jul 07; 132(26):9030-9. Shafaat HS, Leigh BS, Tauber MJ, Kim JE. PMID: 20536238.
      View in: PubMed   Mentions: 18     Fields:    Translation:Cells
    42. Staphylococcus epidermidis antimicrobial delta-toxin (phenol-soluble modulin-gamma) cooperates with host antimicrobial peptides to kill group A Streptococcus. PLoS One. 2010 Jan 05; 5(1):e8557. Cogen AL, Yamasaki K, Muto J, Sanchez KM, Crotty Alexander L, Tanios J, Lai Y, Kim JE, Nizet V, Gallo RL. PMID: 20052280; PMCID: PMC2796718.
      View in: PubMed   Mentions: 93     Fields:    Translation:HumansAnimalsCells
    43. Selective antimicrobial action is provided by phenol-soluble modulins derived from Staphylococcus epidermidis, a normal resident of the skin. J Invest Dermatol. 2010 Jan; 130(1):192-200. Cogen AL, Yamasaki K, Sanchez KM, Dorschner RA, Lai Y, MacLeod DT, Torpey JW, Otto M, Nizet V, Kim JE, Gallo RL. PMID: 19710683; PMCID: PMC2796468.
      View in: PubMed   Mentions: 184     Fields:    Translation:HumansAnimalsCells
    44. Fluorescence and UV resonance Raman study of peptide-vesicle interactions of human cathelicidin LL-37 and its F6W and F17W mutants. Biochemistry. 2009 Dec 01; 48(47):11264-72. Gable JE, Schlamadinger DE, Cogen AL, Gallo RL, Kim JE. PMID: 19894716; PMCID: PMC2801029.
      View in: PubMed   Mentions: 9     Fields:    Translation:HumansCells
    45. Hydrogen bonding and solvent polarity markers in the uv resonance raman spectrum of tryptophan: application to membrane proteins. J Phys Chem B. 2009 Nov 05; 113(44):14769-78. Schlamadinger DE, Gable JE, Kim JE. PMID: 19817473; PMCID: PMC2836804.
      View in: PubMed   Mentions: 16     Fields:    Translation:Cells
    46. Toxins and antimicrobial peptides: Interactions with membranes. Proc SPIE Int Soc Opt Eng. 2009 Aug 20; 7397. Schlamadinger DE, Gable JE, Kim JE. PMID: 25593677; PMCID: PMC4292856.
      View in: PubMed   Mentions: 5  
    47. Resonance Raman studies of the (His)(Cys)3 2Fe-2S cluster of MitoNEET: comparison to the (Cys)4 mutant and implications of the effects of pH on the labile metal center. Biochemistry. 2009 Jun 09; 48(22):4747-52. Tirrell TF, Paddock ML, Conlan AR, Smoll EJ, Nechushtai R, Jennings PA, Kim JE. PMID: 19388667; PMCID: PMC2861891.
      View in: PubMed   Mentions: 29     Fields:    Translation:HumansCells
    48. Resonance Raman characterization of a stable tryptophan radical in an azurin mutant. J Phys Chem B. 2009 Jan 08; 113(1):382-8. Shafaat HS, Leigh BS, Tauber MJ, Kim JE. PMID: 19072535.
      View in: PubMed   Mentions: 11     Fields:    Translation:Cells
    49. Effects of tryptophan microenvironment, soluble domain, and vesicle size on the thermodynamics of membrane protein folding: lessons from the transmembrane protein OmpA. Biochemistry. 2008 Dec 02; 47(48):12844-52. Sanchez KM, Gable JE, Schlamadinger DE, Kim JE. PMID: 18991402; PMCID: PMC2724591.
      View in: PubMed   Mentions: 26     Fields:    Translation:Cells
    50. Förster Resonance Energy Transfer and Conformational Stability of Proteins: An Advanced Biophysical Module for Physical Chemistry Students. J Chem Educ. 2008 Sep 01; 85(9):1253-1256. Sanchez KM, Schlamadinger DE, Gable JE, Kim JE. PMID: 19756254; PMCID: PMC2743118.
      View in: PubMed   Mentions: 5     Fields:    
    51. Thermodynamics of peptide insertion and aggregation in a lipid bilayer. J Phys Chem B. 2008 Aug 28; 112(34):10528-34. Babakhani A, Gorfe AA, Kim JE, McCammon JA. PMID: 18681475; PMCID: PMC2651738.
      View in: PubMed   Mentions: 13     Fields:    Translation:Cells
    52. Marking embryonic stem cells with a 2A self-cleaving peptide: a NKX2-5 emerald GFP BAC reporter. PLoS One. 2008 Jul 02; 3(7):e2532. Hsiao EC, Yoshinaga Y, Nguyen TD, Musone SL, Kim JE, Swinton P, Espineda I, Manalac C, deJong PJ, Conklin BR. PMID: 18596956; PMCID: PMC2430532.
      View in: PubMed   Mentions: 33     Fields:    Translation:HumansAnimalsCells
    53. Ultraviolet resonance Raman spectroscopy of folded and unfolded states of an integral membrane protein. J Phys Chem B. 2008 Aug 07; 112(31):9507-11. Sanchez KM, Neary TJ, Kim JE. PMID: 18588328.
      View in: PubMed   Mentions: 17     Fields:    Translation:Cells
    54. Peptide insertion, positioning, and stabilization in a membrane: insight from an all-atom molecular dynamics simulation. Biopolymers. 2007 Apr 5-15; 85(5-6):490-7. Babakhani A, Gorfe AA, Gullingsrud J, Kim JE, Andrew McCammon J. PMID: 17274025.
      View in: PubMed   Mentions: 7     Fields:    Translation:Cells
    55. Probing folded and unfolded states of outer membrane protein a with steady-state and time-resolved tryptophan fluorescence. J Phys Chem B. 2006 Sep 07; 110(35):17656-62. Kim JE, Arjara G, Richards JH, Gray HB, Winkler JR. PMID: 16942111; PMCID: PMC2519049.
      View in: PubMed   Mentions: 14     Fields:    Translation:Cells
    56. Zinc-porphyrin Solvation in folded and unfolded states of Zn-cytochrome c. Inorg Chem. 2004 Dec 13; 43(25):7953-60. Kim JE, Pribisko MA, Gray HB, Winkler JR. PMID: 15578829.
      View in: PubMed   Mentions: 2     Fields:    Translation:AnimalsCells
    57. Picosecond dynamics of G-protein coupled receptor activation in rhodopsin from time-resolved UV resonance Raman spectroscopy. Biochemistry. 2003 May 13; 42(18):5169-75. Kim JE, Pan D, Mathies RA. PMID: 12731857; PMCID: PMC1404556.
      View in: PubMed   Mentions: 12     Fields:    Translation:AnimalsCells
    58. Analysis of the mode-specific excited-state energy distribution and wavelength-dependent photoreaction quantum yield in rhodopsin. Biophys J. 2003 Apr; 84(4):2492-501. Kim JE, Tauber MJ, Mathies RA. PMID: 12668457; PMCID: PMC1302815.
      View in: PubMed   Mentions: 15     Fields:    Translation:Cells
    59. Vibrational Relaxation in beta-Carotene Probed by Picosecond Stokes and Anti-Stokes Resonance Raman Spectroscopy. J Phys Chem A. 2002 Jun 27; 106(25):6030-8. McCamant DW, Kim JE, Mathies RA. PMID: 17235377; PMCID: PMC1776166.
      View in: PubMed   Mentions: 8     Fields:    
    60. Time-resolved resonance Raman analysis of chromophore structural changes in the formation and decay of rhodopsin's BSI intermediate. J Am Chem Soc. 2002 May 01; 124(17):4857-64. Pan D, Ganim Z, Kim JE, Verhoeven MA, Lugtenburg J, Mathies RA. PMID: 11971736; PMCID: PMC1440918.
      View in: PubMed   Mentions: 15     Fields:    Translation:AnimalsCells
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