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Amitava Majumdar

Title(s)CMPTL AND DATA SCI RSCH MGR 2, CACSE
SchoolVc-academic Affairs
Address9500 Gilman Drive #
La Jolla CA 92093
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Explainable Artificial Intelligence (XAI) in the Era of Large Language Models: Applying an XAI Framework in Pediatric Ophthalmology Diagnosis using the Gemini Model. AMIA Jt Summits Transl Sci Proc. 2025; 2025:566-575. Upadhyaya DP, Prantzalos K, Golnari P, Shaikh AG, Sivagnanam S, Majumdar A, Ghasia FF, Sahoo SS. PMID: 40502262; PMCID: PMC12150742.
      View in: PubMed   Mentions:
    2. Neural Mosaics: Detecting Aberrant Brain Interactions using Algebraic Topology and Generative Artificial Intelligence. AMIA Annu Symp Proc. 2024; 2024:920-929. Prantzalos K, Upadhyaya D, Golnari P, Fernandez-BacaVaca G, Aispuro GP, Salehizadeh S, Thyagaraj S, Gurski N, Yoshimoto K, Sivagnanam S, Majumdar A, Sahoo SS. PMID: 40417558; PMCID: PMC12099319.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    3. MaTiLDA: An Integrated Machine Learning and Topological Data Analysis Platform for Brain Network Dynamics. Pac Symp Biocomput. 2024; 29:65-80. Prantzalos K, Upadhyaya D, Shafiabadi N, Fernandez-BacaVaca G, Gurski N, Yoshimoto K, Sivagnanam S, Majumdar A, Sahoo SS. PMID: 38160270.
      View in: PubMed   Mentions: 2     Fields:    Translation:Humans
    4. Machine Learning Interpretability Methods to Characterize Brain Network Dynamics in Epilepsy. medRxiv. 2023 Oct 19. Upadhyaya DP, Prantzalos K, Thyagaraj S, Shafiabadi N, Fernandez-BacaVaca G, Sivagnanam S, Majumdar A, Sahoo SS. PMID: 37425941; PMCID: PMC10327223.
      View in: PubMed   Mentions:
    5. NEMAR: an open access data, tools and compute resource operating on neuroelectromagnetic data. Database (Oxford). 2022 11 11; 2022. Delorme A, Truong D, Youn C, Sivagnanam S, Stirm C, Yoshimoto K, Poldrack RA, Majumdar A, Makeig S. PMID: 36367313; PMCID: PMC9650770.
      View in: PubMed   Mentions: 9     Fields:    Translation:Humans
    6. The open EEGLAB portal Interface: High-Performance computing with EEGLAB. Neuroimage. 2021 01 01; 224:116778. Martínez-Cancino R, Delorme A, Truong D, Artoni F, Kreutz-Delgado K, Sivagnanam S, Yoshimoto K, Majumdar A, Makeig S. PMID: 32289453; PMCID: PMC8341158.
      View in: PubMed   Mentions: 26     Fields:    Translation:Humans
    7. Open Source Brain: A Collaborative Resource for Visualizing, Analyzing, Simulating, and Developing Standardized Models of Neurons and Circuits. Neuron. 2019 08 07; 103(3):395-411.e5. Gleeson P, Cantarelli M, Marin B, Quintana A, Earnshaw M, Sadeh S, Piasini E, Birgiolas J, Cannon RC, Cayco-Gajic NA, Crook S, Davison AP, Dura-Bernal S, Ecker A, Hines ML, Idili G, Lanore F, Larson SD, Lytton WW, Majumdar A, McDougal RA, Sivagnanam S, Solinas S, Stanislovas R, van Albada SJ, van Geit W, Silver RA. PMID: 31201122; PMCID: PMC6693896.
      View in: PubMed   Mentions: 43     Fields:    Translation:HumansCells
    8. Early experiences in developing and managing the neuroscience gateway. Concurr Comput. 2015 Feb 01; 27(2):473-488. Sivagnanam S, Majumdar A, Yoshimoto K, Astakhov V, Bandrowski A, Martone M, Carnevale NT. PMID: 26523124; PMCID: PMC4624199.
      View in: PubMed   Mentions: 33  
    9. Development of a GPU-based Monte Carlo dose calculation code for coupled electron-photon transport. Phys Med Biol. 2010 Jun 07; 55(11):3077-86. Jia X, Gu X, Sempau J, Choi D, Majumdar A, Jiang SB. PMID: 20463376.
      View in: PubMed   Mentions: 28     Fields:    Translation:Humans
    10. Implementation and evaluation of various demons deformable image registration algorithms on a GPU. Phys Med Biol. 2010 Jan 07; 55(1):207-19. Gu X, Pan H, Liang Y, Castillo R, Yang D, Choi D, Castillo E, Majumdar A, Guerrero T, Jiang SB. PMID: 20009197; PMCID: PMC7540904.
      View in: PubMed   Mentions: 78     Fields:    Translation:Humans
    11. GPU-based ultrafast IMRT plan optimization. Phys Med Biol. 2009 Nov 07; 54(21):6565-73. Men C, Gu X, Choi D, Majumdar A, Zheng Z, Mueller K, Jiang SB. PMID: 19826201.
      View in: PubMed   Mentions: 26     Fields:    Translation:Humans
    12. GPU-based ultra-fast dose calculation using a finite size pencil beam model. Phys Med Biol. 2009 Oct 21; 54(20):6287-97. Gu X, Choi D, Men C, Pan H, Majumdar A, Jiang SB. PMID: 19794244; PMCID: PMC7540905.
      View in: PubMed   Mentions: 15     Fields:    Translation:Humans
    13. Quantity and distribution of levator ani stretch during simulated vaginal childbirth. Am J Obstet Gynecol. 2008 Aug; 199(2):198.e1-5. Hoyte L, Damaser MS, Warfield SK, Chukkapalli G, Majumdar A, Choi DJ, Trivedi A, Krysl P. PMID: 18513684.
      View in: PubMed   Mentions: 32     Fields:    Translation:Humans
    14. A parallel Monte Carlo code for planar and SPECT imaging: implementation, verification and applications in (131)I SPECT. Comput Methods Programs Biomed. 2002 Feb; 67(2):115-24. Dewaraja YK, Ljungberg M, Majumdar A, Bose A, Koral KF. PMID: 11809318; PMCID: PMC2831216.
      View in: PubMed   Mentions: 4     Fields:    Translation:Humans
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