Ibrahim Ozyurt

Title(s)Project Scientist, Neurosciences
SchoolVc-health Sciences-schools
Address9500 Gilman Drive #
La Jolla CA 92093
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Establishing Institutional Scores With the Rigor and Transparency Index: Large-scale Analysis of Scientific Reporting Quality. J Med Internet Res. 2022 06 27; 24(6):e37324. Menke J, Eckmann P, Ozyurt IB, Roelandse M, Anderson N, Grethe J, Gamst A, Bandrowski A. PMID: 35759334; PMCID: PMC9274430.
      View in: PubMed   Mentions: 7     Fields:    Translation:Humans
    2. Antibody Watch: Text mining antibody specificity from the literature. PLoS Comput Biol. 2021 05; 17(5):e1008967. Hsu CN, Chang CH, Poopradubsil T, Lo A, William KA, Lin KW, Bandrowski A, Ozyurt IB, Grethe JS, Martone ME. PMID: 34043624; PMCID: PMC8189493.
      View in: PubMed   Mentions: 2     Fields:    Translation:HumansAnimals
    3. Bio-AnswerFinder: a system to find answers to questions from biomedical texts. Database (Oxford). 2020 01 01; 2020. Ozyurt IB, Bandrowski A, Grethe JS. PMID: 31925435; PMCID: PMC7053013.
      View in: PubMed   Mentions: 1     Fields:    Translation:Humans
    4. Incidences of problematic cell lines are lower in papers that use RRIDs to identify cell lines. Elife. 2019 01 29; 8. Babic Z, Capes-Davis A, Martone ME, Bairoch A, Ozyurt IB, Gillespie TH, Bandrowski AE. PMID: 30693867; PMCID: PMC6351100.
      View in: PubMed   Mentions: 15     Fields:    Translation:HumansCells
    5. Foundry: a message-oriented, horizontally scalable ETL system for scientific data integration and enhancement. Database (Oxford). 2018 01 01; 2018. Ozyurt IB, Grethe JS. PMID: 30576493; PMCID: PMC6301337.
      View in: PubMed   Mentions: 2     Fields:    
    6. DATS, the data tag suite to enable discoverability of datasets. Sci Data. 2017 06 06; 4:170059. Sansone SA, Gonzalez-Beltran A, Rocca-Serra P, Alter G, Grethe JS, Xu H, Fore IM, Lyle J, Gururaj AE, Chen X, Kim HE, Zong N, Li Y, Liu R, Ozyurt IB, Ohno-Machado L. PMID: 28585923; PMCID: PMC5460592.
      View in: PubMed   Mentions: 33     Fields:    
    7. Resource Disambiguator for the Web: Extracting Biomedical Resources and Their Citations from the Scientific Literature. PLoS One. 2016; 11(1):e0146300. Ozyurt IB, Grethe JS, Martone ME, Bandrowski AE. PMID: 26730820; PMCID: PMC5156472.
      View in: PubMed   Mentions: 12     Fields:    Translation:Humans
    8. The Cerebral Blood Flow Biomedical Informatics Research Network (CBFBIRN) data repository. Neuroimage. 2016 Jan 01; 124(Pt B):1202-1207. Shin DD, Ozyurt IB, Brown GG, Fennema-Notestine C, Liu TT. PMID: 26032887; PMCID: PMC4651708.
      View in: PubMed   Mentions: 2     Fields:    Translation:Humans
    9. The Cerebral Blood Flow Biomedical Informatics Research Network (CBFBIRN) database and analysis pipeline for arterial spin labeling MRI data. Front Neuroinform. 2013; 7:21. Shin DD, Ozyurt IB, Liu TT. PMID: 24151465; PMCID: PMC3798866.
      View in: PubMed   Mentions: 15  
    10. Automatic identification and classification of noun argument structures in biomedical literature. IEEE/ACM Trans Comput Biol Bioinform. 2012 Nov-Dec; 9(6):1639-48. Ozyurt IB. PMID: 22868678.
      View in: PubMed   Mentions:    Fields:    
    11. Federated web-accessible clinical data management within an extensible neuroimaging database. Neuroinformatics. 2010 Dec; 8(4):231-49. Ozyurt IB, Keator DB, Wei D, Fennema-Notestine C, Pease KR, Bockholt J, Grethe JS. PMID: 20567938; PMCID: PMC2974931.
      View in: PubMed   Mentions: 31     Fields:    Translation:Humans
    12. Multisite reliability of cognitive BOLD data. Neuroimage. 2011 Feb 01; 54(3):2163-75. Brown GG, Mathalon DH, Stern H, Ford J, Mueller B, Greve DN, McCarthy G, Voyvodic J, Glover G, Diaz M, Yetter E, Ozyurt IB, Jorgensen KW, Wible CG, Turner JA, Thompson WK, Potkin SG, Function Biomedical Informatics Research Network. PMID: 20932915; PMCID: PMC3009557.
      View in: PubMed   Mentions: 44     Fields:    Translation:Humans
    13. Derived Data Storage and Exchange Workflow for Large-Scale Neuroimaging Analyses on the BIRN Grid. Front Neuroinform. 2009; 3:30. Keator DB, Wei D, Gadde S, Bockholt J, Grethe JS, Marcus D, Aucoin N, Ozyurt IB. PMID: 19826494; PMCID: PMC2759340.
      View in: PubMed   Mentions: 19  
    14. Knowledge discovery via machine learning for neurodegenerative disease researchers. Methods Mol Biol. 2009; 569:173-96. Ozyurt IB, Brown GG. PMID: 19623491.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    15. A technique for the deidentification of structural brain MR images. Hum Brain Mapp. 2007 Sep; 28(9):892-903. Bischoff-Grethe A, Ozyurt IB, Busa E, Quinn BT, Fennema-Notestine C, Clark CP, Morris S, Bondi MW, Jernigan TL, Dale AM, Brown GG, Fischl B. PMID: 17295313; PMCID: PMC2408762.
      View in: PubMed   Mentions: 61     Fields:    Translation:Humans
    16. Quantitative evaluation of automated skull-stripping methods applied to contemporary and legacy images: effects of diagnosis, bias correction, and slice location. Hum Brain Mapp. 2006 Feb; 27(2):99-113. Fennema-Notestine C, Ozyurt IB, Clark CP, Morris S, Bischoff-Grethe A, Bondi MW, Jernigan TL, Fischl B, Segonne F, Shattuck DW, Leahy RM, Rex DE, Toga AW, Zou KH, Brown GG. PMID: 15986433; PMCID: PMC2408865.
      View in: PubMed   Mentions: 63     Fields:    Translation:Humans
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