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Graham Mcvicker

Title(s)Assistant Adjunct Professor, Cellular and Molecular Medicine
SchoolVc-health Sciences-schools
Address9500 Gilman Drive #
La Jolla CA 92093
Emailgmcvicker@ucsd.edu
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Discovering functional sequences with RELICS, an analysis method for CRISPR screens. PLoS Comput Biol. 2020 Sep; 16(9):e1008194. Fiaux PC, Chen HV, Chen PB, Chen AR, McVicker G. PMID: 32936799.
      View in: PubMed   Mentions:    Fields:    Translation:HumansCells
    2. Brain cell type-specific enhancer-promoter interactome maps and disease-risk association. Science. 2019 11 29; 366(6469):1134-1139. Nott A, Holtman IR, Coufal NG, Schlachetzki JCM, Yu M, Hu R, Han CZ, Pena M, Xiao J, Wu Y, Keulen Z, Pasillas MP, O'Connor C, Nickl CK, Schafer ST, Shen Z, Rissman RA, Brewer JB, Gosselin D, Gonda DD, Levy ML, Rosenfeld MG, McVicker G, Gage FH, Ren B, Glass CK. PMID: 31727856.
      View in: PubMed   Mentions: 15     Fields:    Translation:HumansCells
    3. Impact of Genetic Polymorphisms on Human Immune Cell Gene Expression. Cell. 2018 11 29; 175(6):1701-1715.e16. Schmiedel BJ, Singh D, Madrigal A, Valdovino-Gonzalez AG, White BM, Zapardiel-Gonzalo J, Ha B, Altay G, Greenbaum JA, McVicker G, Seumois G, Rao A, Kronenberg M, Peters B, Vijayanand P. PMID: 30449622.
      View in: PubMed   Mentions: 33     Fields:    Translation:HumansCTClinical Trials
    4. A comparison of nucleosome organization in Drosophila cell lines. PLoS One. 2017; 12(6):e0178590. Martin RL, Maiorano J, Beitel GJ, Marko JF, McVicker G, Fondufe-Mittendorf YN. PMID: 28570602.
      View in: PubMed   Mentions:    Fields:    Translation:AnimalsCells
    5. A Genomic Map of the Effects of Linked Selection in Drosophila. PLoS Genet. 2016 08; 12(8):e1006130. Elyashiv E, Sattath S, Hu TT, Strutsovsky A, McVicker G, Andolfatto P, Coop G, Sella G. PMID: 27536991.
      View in: PubMed   Mentions: 32     Fields:    Translation:Animals
    6. WASP: allele-specific software for robust molecular quantitative trait locus discovery. Nat Methods. 2015 Nov; 12(11):1061-3. van de Geijn B, McVicker G, Gilad Y, Pritchard JK. PMID: 26366987.
      View in: PubMed   Mentions: 87     Fields:    Translation:Humans
    7. Methylation QTLs are associated with coordinated changes in transcription factor binding, histone modifications, and gene expression levels. PLoS Genet. 2014 Sep; 10(9):e1004663. Banovich NE, Lan X, McVicker G, van de Geijn B, Degner JF, Blischak JD, Roux J, Pritchard JK, Gilad Y. PMID: 25233095.
      View in: PubMed   Mentions: 88     Fields:    Translation:HumansCells
    8. The chromatin architectural proteins HMGD1 and H1 bind reciprocally and have opposite effects on chromatin structure and gene regulation. BMC Genomics. 2014 Feb 01; 15:92. Nalabothula N, McVicker G, Maiorano J, Martin R, Pritchard JK, Fondufe-Mittendorf YN. PMID: 24484546.
      View in: PubMed   Mentions: 15     Fields:    Translation:AnimalsCells
    9. The genome shows its sensitive side. Nat Methods. 2014 Jan; 11(1):39-40. Raj A, McVicker G. PMID: 24378702.
      View in: PubMed   Mentions: 2     Fields:    Translation:HumansCells
    10. Identification of genetic variants that affect histone modifications in human cells. Science. 2013 Nov 08; 342(6159):747-9. McVicker G, van de Geijn B, Degner JF, Cain CE, Banovich NE, Raj A, Lewellen N, Myrthil M, Gilad Y, Pritchard JK. PMID: 24136359.
      View in: PubMed   Mentions: 166     Fields:    Translation:HumansCells
    11. Controls of nucleosome positioning in the human genome. PLoS Genet. 2012; 8(11):e1003036. Gaffney DJ, McVicker G, Pai AA, Fondufe-Mittendorf YN, Lewellen N, Michelini K, Widom J, Gilad Y, Pritchard JK. PMID: 23166509.
      View in: PubMed   Mentions: 97     Fields:    Translation:HumansCells
    12. Trans genomic capture and sequencing of primate exomes reveals new targets of positive selection. Genome Res. 2011 Oct; 21(10):1686-94. George RD, McVicker G, Diederich R, Ng SB, MacKenzie AP, Swanson WJ, Shendure J, Thomas JH. PMID: 21795384.
      View in: PubMed   Mentions: 47     Fields:    Translation:HumansAnimals
    13. Genome variation in Cryptococcus gattii, an emerging pathogen of immunocompetent hosts. mBio. 2011; 2(1):e00342-10. D'Souza CA, Kronstad JW, Taylor G, Warren R, Yuen M, Hu G, Jung WH, Sham A, Kidd SE, Tangen K, Lee N, Zeilmaker T, Sawkins J, McVicker G, Shah S, Gnerre S, Griggs A, Zeng Q, Bartlett K, Li W, Wang X, Heitman J, Stajich JE, Fraser JA, Meyer W, Carter D, Schein J, Krzywinski M, Kwon-Chung KJ, Varma A, Wang J, Brunham R, Fyfe M, Ouellette BF, Siddiqui A, Marra M, Jones S, Holt R, Birren BW, Galagan JE, Cuomo CA. PMID: 21304167.
      View in: PubMed   Mentions: 80     Fields:    Translation:HumansAnimalsPHPublic Health
    14. Genomic signatures of germline gene expression. Genome Res. 2010 Nov; 20(11):1503-11. McVicker G, Green P. PMID: 20686123.
      View in: PubMed   Mentions: 16     Fields:    Translation:HumansAnimalsCells
    15. Widespread genomic signatures of natural selection in hominid evolution. PLoS Genet. 2009 May; 5(5):e1000471. McVicker G, Gordon D, Davis C, Green P. PMID: 19424416.
      View in: PubMed   Mentions: 153     Fields:    Translation:HumansAnimalsCells
    16. Ensembl 2005. Nucleic Acids Res. 2005 Jan 01; 33(Database issue):D447-53. Hubbard T, Andrews D, Caccamo M, Cameron G, Chen Y, Clamp M, Clarke L, Coates G, Cox T, Cunningham F, Curwen V, Cutts T, Down T, Durbin R, Fernandez-Suarez XM, Gilbert J, Hammond M, Herrero J, Hotz H, Howe K, Iyer V, Jekosch K, Kahari A, Kasprzyk A, Keefe D, Keenan S, Kokocinsci F, London D, Longden I, McVicker G, Melsopp C, Meidl P, Potter S, Proctor G, Rae M, Rios D, Schuster M, Searle S, Severin J, Slater G, Smedley D, Smith J, Spooner W, Stabenau A, Stalker J, Storey R, Trevanion S, Ureta-Vidal A, Vogel J, White S, Woodwark C, Birney E. PMID: 15608235.
      View in: PubMed   Mentions: 186     Fields:    Translation:HumansAnimalsCells
    17. The Ensembl core software libraries. Genome Res. 2004 May; 14(5):929-33. Stabenau A, McVicker G, Melsopp C, Proctor G, Clamp M, Birney E. PMID: 15123588.
      View in: PubMed   Mentions: 67     Fields:    Translation:HumansAnimals
    18. An overview of Ensembl. Genome Res. 2004 May; 14(5):925-8. Birney E, Andrews TD, Bevan P, Caccamo M, Chen Y, Clarke L, Coates G, Cuff J, Curwen V, Cutts T, Down T, Eyras E, Fernandez-Suarez XM, Gane P, Gibbins B, Gilbert J, Hammond M, Hotz HR, Iyer V, Jekosch K, Kahari A, Kasprzyk A, Keefe D, Keenan S, Lehvaslaiho H, McVicker G, Melsopp C, Meidl P, Mongin E, Pettett R, Potter S, Proctor G, Rae M, Searle S, Slater G, Smedley D, Smith J, Spooner W, Stabenau A, Stalker J, Storey R, Ureta-Vidal A, Woodwark KC, Cameron G, Durbin R, Cox A, Hubbard T, Clamp M. PMID: 15078858.
      View in: PubMed   Mentions: 167     Fields:    
    19. Ensembl 2004. Nucleic Acids Res. 2004 Jan 01; 32(Database issue):D468-70. Birney E, Andrews D, Bevan P, Caccamo M, Cameron G, Chen Y, Clarke L, Coates G, Cox T, Cuff J, Curwen V, Cutts T, Down T, Durbin R, Eyras E, Fernandez-Suarez XM, Gane P, Gibbins B, Gilbert J, Hammond M, Hotz H, Iyer V, Kahari A, Jekosch K, Kasprzyk A, Keefe D, Keenan S, Lehvaslaiho H, McVicker G, Melsopp C, Meidl P, Mongin E, Pettett R, Potter S, Proctor G, Rae M, Searle S, Slater G, Smedley D, Smith J, Spooner W, Stabenau A, Stalker J, Storey R, Ureta-Vidal A, Woodwark C, Clamp M, Hubbard T. PMID: 14681459.
      View in: PubMed   Mentions: 83     Fields:    Translation:HumansAnimals
    20. GeneComber: combining outputs of gene prediction programs for improved results. Bioinformatics. 2003 Jul 01; 19(10):1296-7. Shah SP, McVicker GP, Mackworth AK, Rogic S, Ouellette BF. PMID: 12835277.
      View in: PubMed   Mentions: 7     Fields:    
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