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Farooq Azam

Title(s)Emeritus Professor, Scripps Institution of Oceanography Department
SchoolMarine Sciences
Address9500 Gilman Drive #0202
La Jolla CA 92093
Phone858-534-6850
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    VIBRIO CHOLERAE PLANKTON COLONIZATION
    NIH/NIAID R01AI046600Mar 1, 2000 - Feb 28, 2006
    Role: Principal Investigator

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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Bionic 3D printed corals. Nat Commun. 2020 Apr 09; 11(1):1748. Wangpraseurt D, You S, Azam F, Jacucci G, Gaidarenko O, Hildebrand M, Kühl M, Smith AG, Davey MP, Smith A, Deheyn DD, Chen S, Vignolini S. PMID: 32273516.
      View in: PubMed   Mentions:    Fields:    
    2. Insight into the resilience and susceptibility of marine bacteria to T6SS attack by Vibrio cholerae and Vibrio coralliilyticus. PLoS One. 2020; 15(1):e0227864. Guillemette R, Ushijima B, Jalan M, Häse CC, Azam F. PMID: 31990915.
      View in: PubMed   Mentions:    Fields:    Translation:AnimalsCells
    3. Viral Attachment to Biotic and Abiotic Surfaces in Seawater. Appl Environ Microbiol. 2020 01 21; 86(3). Yamada Y, Guillemette R, Baudoux AC, Patel N, Azam F. PMID: 31704685.
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    4. Array atomic force microscopy for real-time multiparametric analysis. Proc Natl Acad Sci U S A. 2019 03 26; 116(13):5872-5877. Yang Q, Ma Q, Herum KM, Wang C, Patel N, Lee J, Wang S, Yen TM, Wang J, Tang H, Lo YH, Head BP, Azam F, Xu S, Cauwenberghs G, McCulloch AD, John S, Liu Z, Lal R. PMID: 30850523.
      View in: PubMed   Mentions:    Fields:    Translation:AnimalsCells
    5. Bacterioplankton drawdown of coral mass-spawned organic matter. ISME J. 2018 09; 12(9):2238-2251. Guillemette R, Kaneko R, Blanton J, Tan J, Witt M, Hamilton S, Allen EE, Medina M, Hamasaki K, Koch BP, Azam F. PMID: 29884827.
      View in: PubMed   Mentions:    Fields:    Translation:AnimalsCells
    6. Taxon-specific aerosolization of bacteria and viruses in an experimental ocean-atmosphere mesocosm. Nat Commun. 2018 05 22; 9(1):2017. Michaud JM, Thompson LR, Kaul D, Espinoza JL, Richter RA, Xu ZZ, Lee C, Pham KM, Beall CM, Malfatti F, Azam F, Knight R, Burkart MD, Dupont CL, Prather KA. PMID: 29789621.
      View in: PubMed   Mentions: 3     Fields:    Translation:Cells
    7. Use of plankton-derived vitamin B1 precursors, especially thiazole-related precursor, by key marine picoeukaryotic phytoplankton. ISME J. 2017 03; 11(3):753-765. Paerl RW, Bouget FY, Lozano JC, Vergé V, Schatt P, Allen EE, Palenik B, Azam F. PMID: 27935586.
      View in: PubMed   Mentions: 10     Fields:    Translation:Animals
    8. Enrichment of Saccharides and Divalent Cations in Sea Spray Aerosol During Two Phytoplankton Blooms. Environ Sci Technol. 2016 11 01; 50(21):11511-11520. Jayarathne T, Sultana CM, Lee C, Malfatti F, Cox JL, Pendergraft MA, Moore KA, Azam F, Tivanski AV, Cappa CD, Bertram TH, Grassian VH, Prather KA, Stone EA. PMID: 27709902.
      View in: PubMed   Mentions:    Fields:    
    9. Outer membrane vesicles containing signalling molecules and active hydrolytic enzymes released by a coral pathogen Vibrio shilonii AK1. Environ Microbiol. 2016 11; 18(11):3850-3866. Li J, Azam F, Zhang S. PMID: 27102379.
      View in: PubMed   Mentions: 8     Fields:    Translation:AnimalsCells
    10. Response of bacterial communities from California coastal waters to alginate particles and an alginolytic Alteromonas macleodii strain. Environ Microbiol. 2016 12; 18(12):4369-4377. Mitulla M, Dinasquet J, Guillemette R, Simon M, Azam F, Wietz M. PMID: 27059936.
      View in: PubMed   Mentions: 3     Fields:    Translation:Cells
    11. Advancing Model Systems for Fundamental Laboratory Studies of Sea Spray Aerosol Using the Microbial Loop. J Phys Chem A. 2015 Aug 20; 119(33):8860-70. Lee C, Sultana CM, Collins DB, Santander MV, Axson JL, Malfatti F, Cornwell GC, Grandquist JR, Deane GB, Stokes MD, Azam F, Grassian VH, Prather KA. PMID: 26196268.
      View in: PubMed   Mentions: 1     Fields:    
    12. Microbial Control of Sea Spray Aerosol Composition: A Tale of Two Blooms. ACS Cent Sci. 2015 Jun 24; 1(3):124-31. Wang X, Sultana CM, Trueblood J, Hill TC, Malfatti F, Lee C, Laskina O, Moore KA, Beall CM, McCluskey CS, Cornwell GC, Zhou Y, Cox JL, Pendergraft MA, Santander MV, Bertram TH, Cappa CD, Azam F, DeMott PJ, Grassian VH, Prather KA. PMID: 27162962.
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    13. Genetic diversity of the unicellular nitrogen-fixing cyanobacteria UCYN-A and its prymnesiophyte host. Environ Microbiol. 2014 Oct; 16(10):3238-49. Thompson A, Carter BJ, Turk-Kubo K, Malfatti F, Azam F, Zehr JP. PMID: 24761991.
      View in: PubMed   Mentions: 14     Fields:    Translation:AnimalsCells
    14. Single bacterial strain capable of significant contribution to carbon cycling in the surface ocean. Proc Natl Acad Sci U S A. 2014 May 20; 111(20):7202-7. Pedler BE, Aluwihare LI, Azam F. PMID: 24733921.
      View in: PubMed   Mentions: 38     Fields:    Translation:Cells
    15. Transition metal associations with primary biological particles in sea spray aerosol generated in a wave channel. Environ Sci Technol. 2014 Jan 21; 48(2):1324-33. Guasco TL, Cuadra-Rodriguez LA, Pedler BE, Ault AP, Collins DB, Zhao D, Kim MJ, Ruppel MJ, Wilson SC, Pomeroy RS, Grassian VH, Azam F, Bertram TH, Prather KA. PMID: 24328130.
      View in: PubMed   Mentions: 1     Fields:    
    16. Bringing the ocean into the laboratory to probe the chemical complexity of sea spray aerosol. Proc Natl Acad Sci U S A. 2013 May 07; 110(19):7550-5. Prather KA, Bertram TH, Grassian VH, Deane GB, Stokes MD, Demott PJ, Aluwihare LI, Palenik BP, Azam F, Seinfeld JH, Moffet RC, Molina MJ, Cappa CD, Geiger FM, Roberts GC, Russell LM, Ault AP, Baltrusaitis J, Collins DB, Corrigan CE, Cuadra-Rodriguez LA, Ebben CJ, Forestieri SD, Guasco TL, Hersey SP, Kim MJ, Lambert WF, Modini RL, Mui W, Pedler BE, Ruppel MJ, Ryder OS, Schoepp NG, Sullivan RC, Zhao D. PMID: 23620519.
      View in: PubMed   Mentions: 27     Fields:    Translation:Cells
    17. Capsomer dynamics and stabilization in the T = 12 marine bacteriophage SIO-2 and its procapsid studied by CryoEM. Structure. 2012 Mar 07; 20(3):498-503. Lander GC, Baudoux AC, Azam F, Potter CS, Carragher B, Johnson JE. PMID: 22405008.
      View in: PubMed   Mentions: 5     Fields:    Translation:Cells
    18. Genomic and functional analysis of Vibrio phage SIO-2 reveals novel insights into ecology and evolution of marine siphoviruses. Environ Microbiol. 2012 Aug; 14(8):2071-86. Baudoux AC, Hendrix RW, Lander GC, Bailly X, Podell S, Paillard C, Johnson JE, Potter CS, Carragher B, Azam F. PMID: 22225728.
      View in: PubMed   Mentions: 15     Fields:    Translation:Cells
    19. Corals shed bacteria as a potential mechanism of resilience to organic matter enrichment. ISME J. 2012 Jun; 6(6):1159-65. Garren M, Azam F. PMID: 22189494.
      View in: PubMed   Mentions: 15     Fields:    Translation:AnimalsCells
    20. New directions in coral reef microbial ecology. Environ Microbiol. 2012 Apr; 14(4):833-44. Garren M, Azam F. PMID: 21955796.
      View in: PubMed   Mentions: 19     Fields:    Translation:AnimalsPHPublic Health
    21. Isolation and characterization of a psychropiezophilic alphaproteobacterium. Appl Environ Microbiol. 2011 Nov; 77(22):8145-53. Eloe EA, Malfatti F, Gutierrez J, Hardy K, Schmidt WE, Pogliano K, Pogliano J, Azam F, Bartlett DH. PMID: 21948832.
      View in: PubMed   Mentions: 13     Fields:    Translation:Cells
    22. Quantitative role of shrimp fecal bacteria in organic matter fluxes in a recirculating shrimp aquaculture system. FEMS Microbiol Ecol. 2011 Jul; 77(1):134-45. Beardsley C, Moss S, Malfatti F, Azam F. PMID: 21426366.
      View in: PubMed   Mentions: 4     Fields:    Translation:AnimalsCells
    23. New method for counting bacteria associated with coral mucus. Appl Environ Microbiol. 2010 Sep; 76(18):6128-33. Garren M, Azam F. PMID: 20656857.
      View in: PubMed   Mentions: 14     Fields:    Translation:AnimalsCells
    24. Microbial production of recalcitrant dissolved organic matter: long-term carbon storage in the global ocean. Nat Rev Microbiol. 2010 Aug; 8(8):593-9. Jiao N, Herndl GJ, Hansell DA, Benner R, Kattner G, Wilhelm SW, Kirchman DL, Weinbauer MG, Luo T, Chen F, Azam F. PMID: 20601964.
      View in: PubMed   Mentions: 115     Fields:    Translation:AnimalsCells
    25. Abundance, diversity, and activity of microbial assemblages associated with coral reef fish guts and feces. FEMS Microbiol Ecol. 2010 Jul 01; 73(1):31-42. Smriga S, Sandin SA, Azam F. PMID: 20455942.
      View in: PubMed   Mentions: 16     Fields:    Translation:AnimalsCellsPHPublic Health
    26. High-resolution imaging of pelagic bacteria by Atomic Force Microscopy and implications for carbon cycling. ISME J. 2010 Mar; 4(3):427-39. Malfatti F, Samo TJ, Azam F. PMID: 19940866.
      View in: PubMed   Mentions: 11     Fields:    Translation:Cells
    27. Resilience of coral-associated bacterial communities exposed to fish farm effluent. PLoS One. 2009 Oct 06; 4(10):e7319. Garren M, Raymundo L, Guest J, Harvell CD, Azam F. PMID: 19806190.
      View in: PubMed   Mentions: 27     Fields:    Translation:AnimalsCellsPHPublic Health
    28. Major role of microbes in carbon fluxes during Austral winter in the Southern Drake Passage. PLoS One. 2009 Sep 14; 4(9):e6941. Manganelli M, Malfatti F, Samo TJ, Mitchell BG, Wang H, Azam F. PMID: 19759822.
      View in: PubMed   Mentions: 6     Fields:    Translation:CellsPHPublic Health
    29. Antagonistic interactions among coral-associated bacteria. Environ Microbiol. 2010 Jan; 12(1):28-39. Rypien KL, Ward JR, Azam F. PMID: 19691500.
      View in: PubMed   Mentions: 72     Fields:    Translation:AnimalsCellsPHPublic Health
    30. BACTERIA-INDUCED MOTILITY REDUCTION IN LINGULODINIUM POLYEDRUM (DINOPHYCEAE)(1). J Phycol. 2008 Aug; 44(4):923-8. Mayali X, Franks PJ, Tanaka Y, Azam F. PMID: 27041610.
      View in: PubMed   Mentions: 4     Fields:    
    31. Gradients of coastal fish farm effluents and their effect on coral reef microbes. Environ Microbiol. 2008 Sep; 10(9):2299-312. Garren M, Smriga S, Azam F. PMID: 18557772.
      View in: PubMed   Mentions: 13     Fields:    Translation:AnimalsCellsPHPublic Health
    32. Cultivation and ecosystem role of a marine roseobacter clade-affiliated cluster bacterium. Appl Environ Microbiol. 2008 May; 74(9):2595-603. Mayali X, Franks PJ, Azam F. PMID: 18326670.
      View in: PubMed   Mentions: 23     Fields:    Translation:AnimalsCells
    33. Microbial ecology of four coral atolls in the Northern Line Islands. PLoS One. 2008 Feb 27; 3(2):e1584. Dinsdale EA, Pantos O, Smriga S, Edwards RA, Angly F, Wegley L, Hatay M, Hall D, Brown E, Haynes M, Krause L, Sala E, Sandin SA, Thurber RV, Willis BL, Azam F, Knowlton N, Rohwer F. PMID: 18301735.
      View in: PubMed   Mentions: 118     Fields:    Translation:HumansAnimalsPHPublic Health
    34. Microbial structuring of marine ecosystems. Nat Rev Microbiol. 2007 Oct; 5(10):782-91. Azam F, Malfatti F. PMID: 17853906.
      View in: PubMed   Mentions: 219     Fields:    Translation:AnimalsCellsPHPublic Health
    35. Vibrio cholerae strains possess multiple strategies for abiotic and biotic surface colonization. J Bacteriol. 2007 Jul; 189(14):5348-60. Mueller RS, McDougald D, Cusumano D, Sodhi N, Kjelleberg S, Azam F, Bartlett DH. PMID: 17496082.
      View in: PubMed   Mentions: 26     Fields:    Translation:Cells
    36. Vertical distribution of picoeukaryotic diversity in the Sargasso Sea. Environ Microbiol. 2007 May; 9(5):1233-52. Not F, Gausling R, Azam F, Heidelberg JF, Worden AZ. PMID: 17472637.
      View in: PubMed   Mentions: 46     Fields:    Translation:Animals
    37. Actively growing bacteria in the inland sea of Japan, identified by combined bromodeoxyuridine immunocapture and denaturing gradient gel electrophoresis. Appl Environ Microbiol. 2007 May; 73(9):2787-98. Hamasaki K, Taniguchi A, Tada Y, Long RA, Azam F. PMID: 17337555.
      View in: PubMed   Mentions: 13     Fields:    Translation:CellsPHPublic Health
    38. Widespread occurrence of phage-encoded exotoxin genes in terrestrial and aquatic environments in Southern California. FEMS Microbiol Lett. 2006 Aug; 261(1):141-9. Casas V, Miyake J, Balsley H, Roark J, Telles S, Leeds S, Zurita I, Breitbart M, Bartlett D, Azam F, Rohwer F. PMID: 16842371.
      View in: PubMed   Mentions: 17     Fields:    Translation:CellsPHPublic Health
    39. Trophic regulation of Vibrio cholerae in coastal marine waters. Environ Microbiol. 2006 Jan; 8(1):21-9. Worden AZ, Seidel M, Smriga S, Wick A, Malfatti F, Bartlett D, Azam F. PMID: 16343318.
      View in: PubMed   Mentions: 34     Fields:    Translation:AnimalsCells
    40. Microbiology. Chitin, cholera, and competence. Science. 2005 Dec 16; 310(5755):1775-7. Bartlett DH, Azam F. PMID: 16357249.
      View in: PubMed   Mentions: 7     Fields:    Translation:CellsPHPublic Health
    41. Antagonistic interactions among marine bacteria impede the proliferation of Vibrio cholerae. Appl Environ Microbiol. 2005 Dec; 71(12):8531-6. Long RA, Rowley DC, Zamora E, Liu J, Bartlett DH, Azam F. PMID: 16332844.
      View in: PubMed   Mentions: 31     Fields:    Translation:Cells
    42. A glimpse into the expanded genome content of Vibrio cholerae through identification of genes present in environmental strains. J Bacteriol. 2005 May; 187(9):2992-3001. Purdy A, Rohwer F, Edwards R, Azam F, Bartlett DH. PMID: 15838025.
      View in: PubMed   Mentions: 23     Fields:    Translation:CellsPHPublic Health
    43. Oceanography. Microbes, molecules, and marine ecosystems. Science. 2004 Mar 12; 303(5664):1622-4. Azam F, Worden AZ. PMID: 15016987.
      View in: PubMed   Mentions: 22     Fields:    Translation:Cells
    44. Algicidal bacteria in the sea and their impact on algal blooms. J Eukaryot Microbiol. 2004 Mar-Apr; 51(2):139-44. Mayali X, Azam F. PMID: 15134248.
      View in: PubMed   Mentions: 71     Fields:    Translation:AnimalsCellsPHPublic Health
    45. Growth of Vibrio cholerae O1 in red tide waters off California. Appl Environ Microbiol. 2003 Nov; 69(11):6923-31. Mouriño-Pérez RR, Worden AZ, Azam F. PMID: 14602656.
      View in: PubMed   Mentions: 28     Fields:    Translation:AnimalsCells
    46. 2-n-Pentyl-4-quinolinol produced by a marine Alteromonas sp. and its potential ecological and biogeochemical roles. Appl Environ Microbiol. 2003 Jan; 69(1):568-76. Long RA, Qureshi A, Faulkner DJ, Azam F. PMID: 12514043.
      View in: PubMed   Mentions: 22     Fields:    Translation:AnimalsCells
    47. Regulation of oceanic silicon and carbon preservation by temperature control on bacteria. Science. 2002 Dec 06; 298(5600):1980-4. Bidle KD, Manganelli M, Azam F. PMID: 12471255.
      View in: PubMed   Mentions: 5     Fields:    Translation:AnimalsCells
    48. Widespread N-acetyl-D-glucosamine uptake among pelagic marine bacteria and its ecological implications. Appl Environ Microbiol. 2002 Nov; 68(11):5554-62. Riemann L, Azam F. PMID: 12406749.
      View in: PubMed   Mentions: 32     Fields:    Translation:CellsPHPublic Health
    49. Genomic analysis of uncultured marine viral communities. Proc Natl Acad Sci U S A. 2002 Oct 29; 99(22):14250-5. Breitbart M, Salamon P, Andresen B, Mahaffy JM, Segall AM, Mead D, Azam F, Rohwer F. PMID: 12384570.
      View in: PubMed   Mentions: 303     Fields:    Translation:Cells
    50. Thin laser light sheet microscope for microbial oceanography. Opt Express. 2002 Jan 28; 10(2):145-54. Fuchs E, Jaffe J, Long R, Azam F. PMID: 19424342.
      View in: PubMed   Mentions: 33     Fields:    
    51. Antagonistic interactions among marine pelagic bacteria. Appl Environ Microbiol. 2001 Nov; 67(11):4975-83. Long RA, Azam F. PMID: 11679315.
      View in: PubMed   Mentions: 88     Fields:    Translation:Cells
    52. A simple, rapid method for demonstrating bacterial flagella. Appl Environ Microbiol. 2000 Aug; 66(8):3632-6. Grossart HP, Steward GF, Martinez J, Azam F. PMID: 10919832.
      View in: PubMed   Mentions: 10     Fields:    Translation:Cells
    53. Detection of DNA damage in prokaryotes by terminal deoxyribonucleotide transferase-mediated dUTP nick end labeling. Appl Environ Microbiol. 2000 Mar; 66(3):1001-6. Rohwer F, Azam F. PMID: 10698764.
      View in: PubMed   Mentions: 19     Fields:    Translation:Cells
    54. Dynamics of bacterial community composition and activity during a mesocosm diatom bloom. Appl Environ Microbiol. 2000 Feb; 66(2):578-87. Riemann L, Steward GF, Azam F. PMID: 10653721.
      View in: PubMed   Mentions: 121     Fields:    Translation:AnimalsCellsPHPublic Health
    55. Significance of bacteria in the mucilage phenomenon in the northern Adriatic Sea. Ann Ist Super Sanita. 1999; 35(3):411-9. Azam F, Fonda Umani S, Funari E. PMID: 10721207.
      View in: PubMed   Mentions: 2     Fields:    Translation:AnimalsCellsPHPublic Health
    56. Bacteria-organic matter coupling and its significance for oceanic carbon cycling. Microb Ecol. 1994 Sep; 28(2):167-79. Azam F, Smith DC, Steward GF, Hagström A. PMID: 24186443.
      View in: PubMed   Mentions: 26     Fields:    
    57. Aminopeptidase activity in marine chroococcoid cyanobacteria. Appl Environ Microbiol. 1993 Nov; 59(11):3701-7. Martinez J, Azam F. PMID: 16349084.
      View in: PubMed   Mentions: 9     Fields:    
    58. Characteristics of Cyclic AMP Transport by Marine Bacteria. Appl Environ Microbiol. 1987 Dec; 53(12):2963-6. Ammerman JW, Azam F. PMID: 16347511.
      View in: PubMed   Mentions: 3     Fields:    
    59. Uptake of Cyclic AMP by Natural Populations of Marine Bacteria. Appl Environ Microbiol. 1982 Apr; 43(4):869-76. Ammerman JW, Azam F. PMID: 16345995.
      View in: PubMed   Mentions: 8     Fields:    
    60. Bacterioplankton secondary production estimates for coastal waters of british columbia, antarctica, and california. Appl Environ Microbiol. 1980 Jun; 39(6):1085-95. Fuhrman JA, Azam F. PMID: 16345577.
      View in: PubMed   Mentions: 158     Fields:    
    61. Silicic-acid uptake in diatoms studied with [(68)Ge]germanic acid as tracer. Planta. 1974 Jan; 121(3):205-12. Azam F. PMID: 24442800.
      View in: PubMed   Mentions: 5     Fields:    
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