Lisa Zeigler

Title(s)Assistant Researcher, Marine Biology
SchoolVc-marine Sciences
Address9500 Gilman Drive #
La Jolla CA 92093
ORCID ORCID Icon0000-0002-3436-5660 Additional info
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Diploid genomic architecture of Nitzschia inconspicua, an elite biomass production diatom. Sci Rep. 2021 Aug 02; 11(1):15592. Oliver A, Podell S, Pinowska A, Traller JC, Smith SR, McClure R, Beliaev A, Bohutskyi P, Hill EA, Rabines A, Zheng H, Allen LZ, Kuo A, Grigoriev IV, Allen AE, Hazlebeck D, Allen EE. PMID: 34341414.
      View in: PubMed   Mentions:    Fields:    
    2. Seafloor Incubation Experiment with Deep-Sea Hydrothermal Vent Fluid Reveals Effect of Pressure and Lag Time on Autotrophic Microbial Communities. Appl Environ Microbiol. 2021 04 13; 87(9). Fortunato CS, Butterfield DA, Larson B, Lawrence-Slavas N, Algar CK, Zeigler Allen L, Holden JF, Proskurowski G, Reddington E, Stewart LC, Topçuoglu BD, Vallino JJ, Huber JA. PMID: 33608294.
      View in: PubMed   Mentions:    Fields:    Translation:Cells
    3. Minimum Information about an Uncultivated Virus Genome (MIUViG). Nat Biotechnol. 2019 01; 37(1):29-37. Roux S, Adriaenssens EM, Dutilh BE, Koonin EV, Kropinski AM, Krupovic M, Kuhn JH, Lavigne R, Brister JR, Varsani A, Amid C, Aziz RK, Bordenstein SR, Bork P, Breitbart M, Cochrane GR, Daly RA, Desnues C, Duhaime MB, Emerson JB, Enault F, Fuhrman JA, Hingamp P, Hugenholtz P, Hurwitz BL, Ivanova NN, Labonté JM, Lee KB, Malmstrom RR, Martinez-Garcia M, Mizrachi IK, Ogata H, Páez-Espino D, Petit MA, Putonti C, Rattei T, Reyes A, Rodriguez-Valera F, Rosario K, Schriml L, Schulz F, Steward GF, Sullivan MB, Sunagawa S, Suttle CA, Temperton B, Tringe SG, Thurber RV, Webster NS, Whiteson KL, Wilhelm SW, Wommack KE, Woyke T, Wrighton KC, Yilmaz P, Yoshida T, Young MJ, Yutin N, Allen LZ, Kyrpides NC, Eloe-Fadrosh EA. PMID: 30556814.
      View in: PubMed   Mentions: 74     Fields:    Translation:Cells
    4. The Baltic Sea Virome: Diversity and Transcriptional Activity of DNA and RNA Viruses. mSystems. 2017 Jan-Feb; 2(1). Zeigler Allen L, McCrow JP, Ininbergs K, Dupont CL, Badger JH, Hoffman JM, Ekman M, Allen AE, Bergman B, Venter JC. PMID: 28217745.
      View in: PubMed   Mentions:
    5. Speciation and ecological success in dimly lit waters: horizontal gene transfer in a green sulfur bacteria bloom unveiled by metagenomic assembly. ISME J. 2017 01; 11(1):201-211. Llorens-Marès T, Liu Z, Allen LZ, Rusch DB, Craig MT, Dupont CL, Bryant DA, Casamayor EO. PMID: 27392085.
      View in: PubMed   Mentions: 13     Fields:    Translation:Cells
    6. Diversity and genome dynamics of marine cyanophages using metagenomic analyses. Environ Microbiol Rep. 2014 Dec; 6(6):583-94. Ma Y, Allen LZ, Palenik B. PMID: 25756111.
      View in: PubMed   Mentions: 9     Fields:    Translation:Cells
    7. Functional tradeoffs underpin salinity-driven divergence in microbial community composition. PLoS One. 2014; 9(2):e89549. Dupont CL, Larsson J, Yooseph S, Ininbergs K, Goll J, Asplund-Samuelsson J, McCrow JP, Celepli N, Allen LZ, Ekman M, Lucas AJ, Hagström Å, Thiagarajan M, Brindefalk B, Richter AR, Andersson AF, Tenney A, Lundin D, Tovchigrechko A, Nylander JA, Brami D, Badger JH, Allen AE, Rusch DB, Hoffman J, Norrby E, Friedman R, Pinhassi J, Venter JC, Bergman B. PMID: 24586863.
      View in: PubMed   Mentions: 60     Fields:    Translation:CellsPHPublic Health
    8. A metagenomic framework for the study of airborne microbial communities. PLoS One. 2013; 8(12):e81862. Yooseph S, Andrews-Pfannkoch C, Tenney A, McQuaid J, Williamson S, Thiagarajan M, Brami D, Zeigler-Allen L, Hoffman J, Goll JB, Fadrosh D, Glass J, Adams MD, Friedman R, Venter JC. PMID: 24349140.
      View in: PubMed   Mentions: 32     Fields:    Translation:CellsPHPublic Health
    9. Lineage specific gene family enrichment at the microscale in marine systems. Curr Opin Microbiol. 2013 Oct; 16(5):605-17. Allen AE, Allen LZ, McCrow JP. PMID: 24377115.
      View in: PubMed   Mentions: 10     Fields:    Translation:AnimalsCells
    10. Diffuse flow environments within basalt- and sediment-based hydrothermal vent ecosystems harbor specialized microbial communities. Front Microbiol. 2013; 4:182. Campbell BJ, Polson SW, Zeigler Allen L, Williamson SJ, Lee CK, Wommack KE, Cary SC. PMID: 23898323.
      View in: PubMed   Mentions:
    11. Contrasting genomic properties of free-living and particle-attached microbial assemblages within a coastal ecosystem. Front Microbiol. 2013; 4:120. Smith MW, Zeigler Allen L, Allen AE, Herfort L, Simon HM. PMID: 23750156.
      View in: PubMed   Mentions:
    12. Metagenomic investigation of microbes and viruses in patients with jaw osteonecrosis associated with bisphosphonate therapy. Oral Surg Oral Med Oral Pathol Oral Radiol. 2012 Dec; 114(6):764-70. Sedghizadeh PP, Yooseph S, Fadrosh DW, Zeigler-Allen L, Thiagarajan M, Salek H, Farahnik F, Williamson SJ. PMID: 23159114.
      View in: PubMed   Mentions: 11     Fields:    Translation:Humans
    13. Metagenomic exploration of viruses throughout the Indian Ocean. PLoS One. 2012; 7(10):e42047. Williamson SJ, Allen LZ, Lorenzi HA, Fadrosh DW, Brami D, Thiagarajan M, McCrow JP, Tovchigrechko A, Yooseph S, Venter JC. PMID: 23082107.
      View in: PubMed   Mentions: 47     Fields:    Translation:Cells
    14. Influence of nutrients and currents on the genomic composition of microbes across an upwelling mosaic. ISME J. 2012 Jul; 6(7):1403-14. Zeigler Allen L, Allen EE, Badger JH, McCrow JP, Paulsen IT, Elbourne LD, Thiagarajan M, Rusch DB, Nealson KH, Williamson SJ, Venter JC, Allen AE. PMID: 22278668.
      View in: PubMed   Mentions: 49     Fields:    Translation:Cells
    15. Going deeper: metagenome of a hadopelagic microbial community. PLoS One. 2011; 6(5):e20388. Eloe EA, Fadrosh DW, Novotny M, Zeigler Allen L, Kim M, Lombardo MJ, Yee-Greenbaum J, Yooseph S, Allen EE, Lasken R, Williamson SJ, Bartlett DH. PMID: 21629664.
      View in: PubMed   Mentions: 34     Fields:    Translation:Cells
    16. Single virus genomics: a new tool for virus discovery. PLoS One. 2011 Mar 23; 6(3):e17722. Allen LZ, Ishoey T, Novotny MA, McLean JS, Lasken RS, Williamson SJ. PMID: 21436882.
      View in: PubMed   Mentions: 54     Fields:    Translation:Cells
    17. Genomic and functional adaptation in surface ocean planktonic prokaryotes. Nature. 2010 Nov 04; 468(7320):60-6. Yooseph S, Nealson KH, Rusch DB, McCrow JP, Dupont CL, Kim M, Johnson J, Montgomery R, Ferriera S, Beeson K, Williamson SJ, Tovchigrechko A, Allen AE, Zeigler LA, Sutton G, Eisenstadt E, Rogers YH, Friedman R, Frazier M, Venter JC. PMID: 21048761.
      View in: PubMed   Mentions: 104     Fields:    Translation:CellsPHPublic Health
    18. Genome sequencing reveals complex secondary metabolome in the marine actinomycete Salinispora tropica. Proc Natl Acad Sci U S A. 2007 Jun 19; 104(25):10376-81. Udwary DW, Zeigler L, Asolkar RN, Singan V, Lapidus A, Fenical W, Jensen PR, Moore BS. PMID: 17563368.
      View in: PubMed   Mentions: 192     Fields:    Translation:Cells
    19. Species-specific secondary metabolite production in marine actinomycetes of the genus Salinispora. Appl Environ Microbiol. 2007 Feb; 73(4):1146-52. Jensen PR, Williams PG, Oh DC, Zeigler L, Fenical W. PMID: 17158611.
      View in: PubMed   Mentions: 100     Fields:    Translation:Cells
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