Todd Michael

Title(s)Adjunct Professor, Cell and Developmental Biology
SchoolVc-academic Affairs
Address9500 Gilman Drive #
La Jolla CA 92093
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Allopolyploid origin and diversification of the Hawaiian endemic mints. Nat Commun. 2024 Apr 10; 15(1):3109. Tomlin CM, Rajaraman S, Sebesta JT, Scheen AC, Bendiksby M, Low YW, Salojärvi J, Michael TP, Albert VA, Lindqvist C. PMID: 38600100; PMCID: PMC11006916.
      View in: PubMed   Mentions:
    2. The unusual predominance of maintenance DNA methylation in Spirodela polyrhiza. G3 (Bethesda). 2024 Apr 03; 14(4). Harkess A, Bewick AJ, Lu Z, Fourounjian P, Michael TP, Schmitz RJ, Meyers BC. PMID: 38190722; PMCID: PMC10989885.
      View in: PubMed   Mentions:    Fields:    
    3. Genetic Mapping, Identification, and Characterization of a Candidate Susceptibility Gene for Powdery Mildew in Cannabis sativa. Mol Plant Microbe Interact. 2024 Jan; 37(1):51-61. Stack GM, Cala AR, Quade MA, Toth JA, Monserrate LA, Wilkerson DG, Carlson CH, Mamerto A, Michael TP, Crawford S, Smart CD, Smart LB. PMID: 37750850.
      View in: PubMed   Mentions: 1     Fields:    Translation:Animals
    4. Biosynthesis of Haloterpenoids in Red Algae via Microbial-like Type I Terpene Synthases. ACS Chem Biol. 2024 Jan 19; 19(1):185-192. Steele TS, Burkhardt I, Moore ML, de Rond T, Bone HK, Barry K, Bunting VM, Grimwood J, Handley LH, Rajasekar S, Talag J, Michael TP, Moore BS. PMID: 38081799; PMCID: PMC10985283.
      View in: PubMed   Mentions:    Fields:    Translation:Animals
    5. Generating high-quality plant and fish reference genomes from field-collected specimens by optimizing preservation. Commun Biol. 2023 12 09; 6(1):1246. Minich JJ, Moore ML, Allsing NA, Aylward A, Murray ER, Tran L, Michael TP. PMID: 38071270; PMCID: PMC10710401.
      View in: PubMed   Mentions: Translation:Animals
    6. Subgenome dominance shapes novel gene evolution in the decaploid pitcher plant Nepenthes gracilis. Nat Plants. 2023 12; 9(12):2000-2015. Saul F, Scharmann M, Wakatake T, Rajaraman S, Marques A, Freund M, Bringmann G, Channon L, Becker D, Carroll E, Low YW, Lindqvist C, Gilbert KJ, Renner T, Masuda S, Richter M, Vogg G, Shirasu K, Michael TP, Hedrich R, Albert VA, Fukushima K. PMID: 37996654.
      View in: PubMed   Mentions: 1     Fields:    
    7. PanKmer: k-mer-based and reference-free pangenome analysis. Bioinformatics. 2023 10 03; 39(10). Aylward AJ, Petrus S, Mamerto A, Hartwick NT, Michael TP. PMID: 37846049; PMCID: PMC10603592.
      View in: PubMed   Mentions:    Fields:    Translation:HumansAnimals
    8. Genomics of turions from the Greater Duckweed reveal its pathways for dormancy and re-emergence strategy. New Phytol. 2023 07; 239(1):116-131. Pasaribu B, Acosta K, Aylward A, Liang Y, Abramson BW, Colt K, Hartwick NT, Shanklin J, Michael TP, Lam E. PMID: 37149888.
      View in: PubMed   Mentions: 3     Fields:    Translation:Animals
    9. Porcine reproductive and respiratory syndrome virus degrades DDX10 via SQSTM1/p62-dependent selective autophagy to antagonize its antiviral activity. Autophagy. 2023 08; 19(8):2257-2274. Li J, Zhou Y, Zhao W, Liu J, Ullah R, Fang P, Fang L, Xiao S. PMID: 36779599; PMCID: PMC10351467.
      View in: PubMed   Mentions: 3     Fields:    Translation:AnimalsCells
    10. Optimization of Molecular Methods for Detecting Duckweed-Associated Bacteria. Plants (Basel). 2023 Feb 15; 12(4). Acosta K, Sorrels S, Chrisler W, Huang W, Gilbert S, Brinkman T, Michael TP, Lebeis SL, Lam E. PMID: 36840219; PMCID: PMC9965182.
      View in: PubMed   Mentions: 1  
    11. The phylogenomics and evolutionary dynamics of the organellar genomes in carnivorous Utricularia and Genlisea species (Lentibulariaceae). Mol Phylogenet Evol. 2023 04; 181:107711. Silva SR, Miranda VFO, Michael TP, Plachno BJ, Matos RG, Adamec L, Pond SLK, Lucaci AG, Pinheiro DG, Varani AM. PMID: 36693533.
      View in: PubMed   Mentions: 2     Fields:    Translation:Animals
    12. [Determination of organophosphate diesters in facility vegetable soils using ultra-high performance liquid chromatography-electrostatic field orbitrap high resolution mass spectrometry]. Se Pu. 2023 Jan; 41(1):58-65. Liu M, Wang M, Zhao A, Zhu L, Wang C, Wei C, Liu W, Xu J. PMID: 36633077.
      View in: PubMed   Mentions:    Fields:    
    13. Time of Day Analysis over a Field Grown Developmental Time Course in Rice. Plants (Basel). 2022 Dec 30; 12(1). Michael TP. PMID: 36616295.
      View in: PubMed   Mentions: 1  
    14. Host biology, ecology and the environment influence microbial biomass and diversity in 101 marine fish species. Nat Commun. 2022 11 17; 13(1):6978. Minich JJ, Härer A, Vechinski J, Frable BW, Skelton ZR, Kunselman E, Shane MA, Perry DS, Gonzalez A, McDonald D, Knight R, Michael TP, Allen EE. PMID: 36396943; PMCID: PMC9671965.
      View in: PubMed   Mentions: 9     Fields:    Translation:Animals
    15. Evolutionary gain and loss of a plant pattern-recognition receptor for HAMP recognition. Elife. 2022 11 15; 11. Snoeck S, Abramson BW, Garcia AGK, Egan AN, Michael TP, Steinbrenner AD. PMID: 36377784; PMCID: PMC9718524.
      View in: PubMed   Mentions: 3     Fields:    Translation:Animals
    16. Core circadian clock and light signaling genes brought into genetic linkage across the green lineage. Plant Physiol. 2022 09 28; 190(2):1037-1056. Michael TP. PMID: 35674369; PMCID: PMC9516744.
      View in: PubMed   Mentions: 2     Fields:    Translation:HumansAnimals
    17. Characterization of defense responses against bacterial pathogens in duckweeds lacking EDS1. New Phytol. 2022 Dec; 236(5):1838-1855. Baggs EL, Tiersma MB, Abramson BW, Michael TP, Krasileva KV. PMID: 36052715.
      View in: PubMed   Mentions: 2     Fields:    Translation:Animals
    18. Genomic insights into rapid speciation within the world's largest tree genus Syzygium. Nat Commun. 2022 09 12; 13(1):5031. Low YW, Rajaraman S, Tomlin CM, Ahmad JA, Ardi WH, Armstrong K, Athen P, Berhaman A, Bone RE, Cheek M, Cho NRW, Choo LM, Cowie ID, Crayn D, Fleck SJ, Ford AJ, Forster PI, Girmansyah D, Goyder DJ, Gray B, Heatubun CD, Ibrahim A, Ibrahim B, Jayasinghe HD, Kalat MA, Kathriarachchi HS, Kintamani E, Koh SL, Lai JTK, Lee SML, Leong PKF, Lim WH, Lum SKY, Mahyuni R, McDonald WJF, Metali F, Mustaqim WA, Naiki A, Ngo KM, Niissalo M, Ranasinghe S, Repin R, Rustiami H, Simbiak VI, Sukri RS, Sunarti S, Trethowan LA, Trias-Blasi A, Vasconcelos TNC, Wanma JF, Widodo P, Wijesundara DSA, Worboys S, Yap JW, Yong KT, Khew GSW, Salojärvi J, Michael TP, Middleton DJ, Burslem DFRP, Lindqvist C, Lucas EJ, Albert VA. PMID: 36097018; PMCID: PMC9468008.
      View in: PubMed   Mentions: 4     Fields:    Translation:Animals
    19. Retraction Note: Selective inheritance of target genes from only one parent of sexually reproduced F1 progeny in Arabidopsis. Nat Commun. 2022 06 07; 13(1):3270. Zhang T, Mudgett M, Rambabu R, Abramson B, Dai X, Michael TP, Zhao Y. PMID: 35672322; PMCID: PMC9174252.
      View in: PubMed   Mentions: 2     Fields:    
    20. Contrasting a reference cranberry genome to a crop wild relative provides insights into adaptation, domestication, and breeding. PLoS One. 2022; 17(3):e0264966. Kawash J, Colt K, Hartwick NT, Abramson BW, Vorsa N, Polashock JJ, Michael TP. PMID: 35255111; PMCID: PMC8901128.
      View in: PubMed   Mentions: 7     Fields:    Translation:Animals
    21. The complete mitochondrial genome of carnivorous Genlisea tuberosa (Lentibulariaceae): Structure and evolutionary aspects. Gene. 2022 May 25; 824:146391. Matos RG, Silva SR, Plachno BJ, Adamec L, Michael TP, Varani AM, Miranda VFO. PMID: 35259463.
      View in: PubMed   Mentions:    Fields:    Translation:Animals
    22. The genome and preliminary single-nuclei transcriptome of Lemna minuta reveals mechanisms of invasiveness. Plant Physiol. 2022 02 04; 188(2):879-897. Abramson BW, Novotny M, Hartwick NT, Colt K, Aevermann BD, Scheuermann RH, Michael TP. PMID: 34893913; PMCID: PMC8825320.
      View in: PubMed   Mentions: 6     Fields:    Translation:AnimalsCells
    23. Chromosome-Level Genome Assembly of a Human Fungal Pathogen Reveals Synteny among Geographically Distinct Species. mBio. 2022 02 22; 13(1):e0257421. Voorhies M, Cohen S, Shea TP, Petrus S, Muñoz JF, Poplawski S, Goldman WE, Michael TP, Cuomo CA, Sil A, Beyhan S. PMID: 35089059; PMCID: PMC8725592.
      View in: PubMed   Mentions: 7     Fields:    Translation:HumansAnimalsCells
    24. Wolffia, a minimalist plant and synthetic biology chassis. Trends Plant Sci. 2022 05; 27(5):430-439. Lam E, Michael TP. PMID: 34920947.
      View in: PubMed   Mentions:    Fields:    Translation:Animals
    25. The genetic and epigenetic landscape of the Arabidopsis centromeres. Science. 2021 Nov 12; 374(6569):eabi7489. Naish M, Alonge M, Wlodzimierz P, Tock AJ, Abramson BW, Schmücker A, Mandáková T, Jamge B, Lambing C, Kuo P, Yelina N, Hartwick N, Colt K, Smith LM, Ton J, Kakutani T, Martienssen RA, Schneeberger K, Lysak MA, Berger F, Bousios A, Michael TP, Schatz MC, Henderson IR. PMID: 34762468; PMCID: PMC10164409.
      View in: PubMed   Mentions: 95     Fields:    Translation:AnimalsCells
    26. Large structural variations in the haplotype-resolved African cassava genome. Plant J. 2021 12; 108(6):1830-1848. Mansfeld BN, Boyher A, Berry JC, Wilson M, Ou S, Polydore S, Michael TP, Fahlgren N, Bart RS. PMID: 34661327; PMCID: PMC9299708.
      View in: PubMed   Mentions: 11     Fields:    Translation:AnimalsCells
    27. Underwater CAM photosynthesis elucidated by Isoetes genome. Nat Commun. 2021 11 03; 12(1):6348. Wickell D, Kuo LY, Yang HP, Dhabalia Ashok A, Irisarri I, Dadras A, de Vries S, de Vries J, Huang YM, Li Z, Barker MS, Hartwick NT, Michael TP, Li FW. PMID: 34732722; PMCID: PMC8566536.
      View in: PubMed   Mentions: 31     Fields:    Translation:AnimalsCells
    28. Return of the Lemnaceae: duckweed as a model plant system in the genomics and postgenomics era. Plant Cell. 2021 10 11; 33(10):3207-3234. Acosta K, Appenroth KJ, Borisjuk L, Edelman M, Heinig U, Jansen MAK, Oyama T, Pasaribu B, Schubert I, Sorrels S, Sree KS, Xu S, Michael TP, Lam E. PMID: 34273173; PMCID: PMC8505876.
      View in: PubMed   Mentions: 51     Fields:    Translation:Animals
    29. Selective inheritance of target genes from only one parent of sexually reproduced F1 progeny in Arabidopsis. Nat Commun. 2021 06 22; 12(1):3854. Zhang T, Mudgett M, Rambabu R, Abramson B, Dai X, Michael TP, Zhao Y. PMID: 34158505; PMCID: PMC8219824.
      View in: PubMed   Mentions: 9     Fields:    Translation:AnimalsCells
    30. Horizontal transfer and evolution of wall teichoic acid gene cassettes in  Bacillus subtilis. F1000Res. 2021; 10:354. Sutton G, Fogel GB, Abramson B, Brinkac L, Michael T, Liu ES, Thomas S. PMID: 35035886; PMCID: PMC8753576.
      View in: PubMed   Mentions: 1     Fields:    Translation:Cells
    31. A pan-genome method to determine core regions of the Bacillus subtilis and Escherichia coli genomes. F1000Res. 2021; 10:286. Sutton G, Fogel GB, Abramson B, Brinkac L, Michael T, Liu ES, Thomas S. PMID: 34113437; PMCID: PMC8156514.
      View in: PubMed   Mentions: 3     Fields:    Translation:Cells
    32. Improved Spirodela polyrhiza genome and proteomic analyses reveal a conserved chromosomal structure with high abundance of chloroplastic proteins favoring energy production. J Exp Bot. 2021 03 29; 72(7):2491-2500. Harkess A, McLoughlin F, Bilkey N, Elliott K, Emenecker R, Mattoon E, Miller K, Czymmek K, Vierstra RD, Meyers BC, Michael TP. PMID: 33454741.
      View in: PubMed   Mentions: 14     Fields:    Translation:Animals
    33. A new Cannabis genome assembly associates elevated cannabidiol (CBD) with hemp introgressed into marijuana. New Phytol. 2021 05; 230(4):1665-1679. Grassa CJ, Weiblen GD, Wenger JP, Dabney C, Poplawski SG, Timothy Motley S, Michael TP, Schwartz CJ. PMID: 33521943; PMCID: PMC8248131.
      View in: PubMed   Mentions: 42     Fields:    Translation:Animals
    34. Genome and time-of-day transcriptome of Wolffia australiana link morphological minimization with gene loss and less growth control. Genome Res. 2021 Feb; 31(2):225-238. Michael TP, Ernst E, Hartwick N, Chu P, Bryant D, Gilbert S, Ortleb S, Baggs EL, Sree KS, Appenroth KJ, Fuchs J, Jupe F, Sandoval JP, Krasileva KV, Borisjuk L, Mockler TC, Ecker JR, Martienssen RA, Lam E. PMID: 33361111; PMCID: PMC7849404.
      View in: PubMed   Mentions: 27     Fields:    
    35. Injury, Illness, and Mental Health Risks in United States Domestic Mariners. J Occup Environ Med. 2020 10; 62(10):839-841. Lefkowitz RY, Null DB, Slade MD, Redlich CA. PMID: 32769797.
      View in: PubMed   Mentions: 5     Fields:    Translation:Humans
    36. Gross Chromosomal Rearrangements in Kluyveromyces marxianus Revealed by Illumina and Oxford Nanopore Sequencing. Int J Mol Sci. 2020 Sep 26; 21(19). Ding L, Macdonald HD, Smith HO, Hutchison Iii CA, Merryman C, Michael TP, Abramson BW, Kannan K, Liang J, Gill J, Gibson DG, Glass JI. PMID: 32993167; PMCID: PMC7582981.
      View in: PubMed   Mentions:    Fields:    Translation:AnimalsCells
    37. Gapless assembly of maize chromosomes using long-read technologies. Genome Biol. 2020 05 20; 21(1):121. Liu J, Seetharam AS, Chougule K, Ou S, Swentowsky KW, Gent JI, Llaca V, Woodhouse MR, Manchanda N, Presting GG, Kudrna DA, Alabady M, Hirsch CN, Fengler KA, Ware D, Michael TP, Hufford MB, Dawe RK. PMID: 32434565; PMCID: PMC7238635.
      View in: PubMed   Mentions: 47     Fields:    Translation:AnimalsCells
    38. Temporal, Environmental, and Biological Drivers of the Mucosal Microbiome in a Wild Marine Fish, Scomber japonicus. mSphere. 2020 05 20; 5(3). Minich JJ, Petrus S, Michael JD, Michael TP, Knight R, Allen EE. PMID: 32434844; PMCID: PMC7380571.
      View in: PubMed   Mentions: 17     Fields:    Translation:Animals
    39. Changes in ambient temperature are the prevailing cue in determining Brachypodium distachyon diurnal gene regulation. New Phytol. 2020 09; 227(6):1709-1724. MacKinnon KJ, Cole BJ, Yu C, Coomey JH, Hartwick NT, Remigereau MS, Duffy T, Michael TP, Kay SA, Hazen SP. PMID: 32112414.
      View in: PubMed   Mentions: 4     Fields:    Translation:Animals
    40. Imaging examination, diagnosis, and control and prevention of nosocomial infection for coronavirus disease 2019: Expert consensus of Hunan radiologist. Zhong Nan Da Xue Xue Bao Yi Xue Ban. 2020 Mar 28; 45(3):221-228. Liu J, Wang W. PMID: 32386011.
      View in: PubMed   Mentions: 2     Fields:    Translation:HumansCellsPHPublic Health
    41. An Antisense Oligonucleotide Leads to Suppressed Transcription of Hdac2 and Long-Term Memory Enhancement. Mol Ther Nucleic Acids. 2020 Mar 06; 19:1399-1412. Poplawski SG, Garbett KA, McMahan RL, Kordasiewicz HB, Zhao H, Kennedy AJ, Goleva SB, Sanders TH, Motley ST, Swayze EE, Ecker DJ, Sweatt JD, Michael TP, Greer CB. PMID: 32160709; PMCID: PMC7047133.
      View in: PubMed   Mentions: 10  
    42. Exceptional subgenome stability and functional divergence in the allotetraploid Ethiopian cereal teff. Nat Commun. 2020 02 14; 11(1):884. VanBuren R, Man Wai C, Wang X, Pardo J, Yocca AE, Wang H, Chaluvadi SR, Han G, Bryant D, Edger PP, Messing J, Sorrells ME, Mockler TC, Bennetzen JL, Michael TP. PMID: 32060277; PMCID: PMC7021729.
      View in: PubMed   Mentions: 54     Fields:    Translation:Animals
    43. Building near-complete plant genomes. Curr Opin Plant Biol. 2020 04; 54:26-33. Michael TP, VanBuren R. PMID: 31981929.
      View in: PubMed   Mentions: 70     Fields:    Translation:Cells
    44. The Terrestrial Carnivorous Plant Utricularia reniformis Sheds Light on Environmental and Life-Form Genome Plasticity. Int J Mol Sci. 2019 Dec 18; 21(1). Silva SR, Moraes AP, Penha HA, Julião MHM, Domingues DS, Michael TP, Miranda VFO, Varani AM. PMID: 31861318; PMCID: PMC6982007.
      View in: PubMed   Mentions: 6     Fields:    Translation:AnimalsCells
    45. Intraspecific Variation within the Utricularia amethystina Species Morphotypes Based on Chloroplast Genomes. Int J Mol Sci. 2019 Dec 05; 20(24). Silva SR, Pinheiro DG, Penha HA, Plachno BJ, Michael TP, Meer EJ, Miranda VFO, Varani AM. PMID: 31817365; PMCID: PMC6940893.
      View in: PubMed   Mentions: 12     Fields:    Translation:AnimalsCells
    46. Time of day and network reprogramming during drought induced CAM photosynthesis in Sedum album. PLoS Genet. 2019 06; 15(6):e1008209. Wai CM, Weise SE, Ozersky P, Mockler TC, Michael TP, VanBuren R. PMID: 31199791; PMCID: PMC6594660.
      View in: PubMed   Mentions: 22     Fields:    Translation:AnimalsCells
    47. Scalable Biosynthesis of the Seaweed Neurochemical, Kainic Acid. Angew Chem Int Ed Engl. 2019 06 17; 58(25):8454-8457. Chekan JR, McKinnie SMK, Moore ML, Poplawski SG, Michael TP, Moore BS. PMID: 30995339; PMCID: PMC6574125.
      View in: PubMed   Mentions: 22     Fields:    Translation:AnimalsCells
    48. Lycophyte plastid genomics: extreme variation in GC, gene and intron content and multiple inversions between a direct and inverted orientation of the rRNA repeat. New Phytol. 2019 04; 222(2):1061-1075. Mower JP, Ma PF, Grewe F, Taylor A, Michael TP, VanBuren R, Qiu YL. PMID: 30556907; PMCID: PMC6590440.
      View in: PubMed   Mentions: 27     Fields:    Translation:AnimalsCells
    49. The complex architecture and epigenomic impact of plant T-DNA insertions. PLoS Genet. 2019 01; 15(1):e1007819. Jupe F, Rivkin AC, Michael TP, Zander M, Motley ST, Sandoval JP, Slotkin RK, Chen H, Castanon R, Nery JR, Ecker JR. PMID: 30657772; PMCID: PMC6338467.
      View in: PubMed   Mentions: 65     Fields:    Translation:AnimalsCells
    50. Generating a high-confidence reference genome map of the Greater Duckweed by integration of cytogenomic, optical mapping, and Oxford Nanopore technologies. Plant J. 2018 11; 96(3):670-684. Hoang PNT, Michael TP, Gilbert S, Chu P, Motley ST, Appenroth KJ, Schubert I, Lam E. PMID: 30054939.
      View in: PubMed   Mentions: 28     Fields:    Translation:AnimalsCells
    51. Sequence-guided approach to genotyping plant clones and species using polymorphic NB-ARC-related genes. Plant Mol Biol. 2018 Oct; 98(3):219-231. Chu P, Wilson GM, Michael TP, Vaiciunas J, Honig J, Lam E. PMID: 30191440.
      View in: PubMed   Mentions: 3     Fields:    Translation:Animals
    52. Elevated temperature drives kelp microbiome dysbiosis, while elevated carbon dioxide induces water microbiome disruption. PLoS One. 2018; 13(2):e0192772. Minich JJ, Morris MM, Brown M, Doane M, Edwards MS, Michael TP, Dinsdale EA. PMID: 29474389; PMCID: PMC5825054.
      View in: PubMed   Mentions: 38     Fields:    Translation:AnimalsPHPublic Health
    53. High contiguity Arabidopsis thaliana genome assembly with a single nanopore flow cell. Nat Commun. 2018 02 07; 9(1):541. Michael TP, Jupe F, Bemm F, Motley ST, Sandoval JP, Lanz C, Loudet O, Weigel D, Ecker JR. PMID: 29416032; PMCID: PMC5803254.
      View in: PubMed   Mentions: 132     Fields:    Translation:AnimalsCells
    54. Extreme haplotype variation in the desiccation-tolerant clubmoss Selaginella lepidophylla. Nat Commun. 2018 01 02; 9(1):13. VanBuren R, Wai CM, Ou S, Pardo J, Bryant D, Jiang N, Mockler TC, Edger P, Michael TP. PMID: 29296019; PMCID: PMC5750206.
      View in: PubMed   Mentions: 38     Fields:    Translation:AnimalsCells
    55. Comparative genomic analysis of Genlisea (corkscrew plants-Lentibulariaceae) chloroplast genomes reveals an increasing loss of the ndh genes. PLoS One. 2018; 13(1):e0190321. Silva SR, Michael TP, Meer EJ, Pinheiro DG, Varani AM, Miranda VFO. PMID: 29293597; PMCID: PMC5749785.
      View in: PubMed   Mentions: 7     Fields:    Translation:AnimalsCells
    56. Development of microsatellite markers for the carnivorous plant Genlisea aurea (Lentibulariaceae) using genomics data of NGS. Mol Biol Rep. 2018 Feb; 45(1):57-61. Aranguren-Díaz YC, Varani AM, Michael TP, Miranda VFO. PMID: 29275442.
      View in: PubMed   Mentions: 2     Fields:    Translation:AnimalsCells
    57. Seed desiccation mechanisms co-opted for vegetative desiccation in the resurrection grass Oropetium thomaeum. Plant Cell Environ. 2017 Oct; 40(10):2292-2306. VanBuren R, Wai CM, Zhang Q, Song X, Edger PP, Bryant D, Michael TP, Mockler TC, Bartels D. PMID: 28730594.
      View in: PubMed   Mentions: 19     Fields:    Translation:AnimalsCells
    58. The mitochondrial genome of the terrestrial carnivorous plant Utricularia reniformis (Lentibulariaceae): Structure, comparative analysis and evolutionary landmarks. PLoS One. 2017; 12(7):e0180484. Silva SR, Alvarenga DO, Aranguren Y, Penha HA, Fernandes CC, Pinheiro DG, Oliveira MT, Michael TP, Miranda VFO, Varani AM. PMID: 28723946; PMCID: PMC5516982.
      View in: PubMed   Mentions: 10     Fields:    Translation:Animals
    59. Comprehensive definition of genome features in Spirodela polyrhiza by high-depth physical mapping and short-read DNA sequencing strategies. Plant J. 2017 02; 89(3):617-635. Michael TP, Bryant D, Gutierrez R, Borisjuk N, Chu P, Zhang H, Xia J, Zhou J, Peng H, El Baidouri M, Ten Hallers B, Hastie AR, Liang T, Acosta K, Gilbert S, McEntee C, Jackson SA, Mockler TC, Zhang W, Lam E. PMID: 27754575.
      View in: PubMed   Mentions: 47     Fields:    Translation:AnimalsCells
    60. The Chloroplast Genome of Utricularia reniformis Sheds Light on the Evolution of the ndh Gene Complex of Terrestrial Carnivorous Plants from the Lentibulariaceae Family. PLoS One. 2016; 11(10):e0165176. Silva SR, Diaz YC, Penha HA, Pinheiro DG, Fernandes CC, Miranda VF, Michael TP, Varani AM. PMID: 27764252; PMCID: PMC5072713.
      View in: PubMed   Mentions: 24     Fields:    Translation:AnimalsCells
    61. Tcf4 Regulates Synaptic Plasticity, DNA Methylation, and Memory Function. Cell Rep. 2016 09 06; 16(10):2666-2685. Kennedy AJ, Rahn EJ, Paulukaitis BS, Savell KE, Kordasiewicz HB, Wang J, Lewis JW, Posey J, Strange SK, Guzman-Karlsson MC, Phillips SE, Decker K, Motley ST, Swayze EE, Ecker DJ, Michael TP, Day JJ, Sweatt JD. PMID: 27568567; PMCID: PMC5710002.
      View in: PubMed   Mentions: 72     Fields:    Translation:AnimalsCells
    62. The genome of black raspberry (Rubus occidentalis). Plant J. 2016 09; 87(6):535-47. VanBuren R, Bryant D, Bushakra JM, Vining KJ, Edger PP, Rowley ER, Priest HD, Michael TP, Lyons E, Filichkin SA, Dossett M, Finn CE, Bassil NV, Mockler TC. PMID: 27228578.
      View in: PubMed   Mentions: 42     Fields:    Translation:AnimalsCells
    63. Single-molecule sequencing of the desiccation-tolerant grass Oropetium thomaeum. Nature. 2015 Nov 26; 527(7579):508-11. VanBuren R, Bryant D, Edger PP, Tang H, Burgess D, Challabathula D, Spittle K, Hall R, Gu J, Lyons E, Freeling M, Bartels D, Ten Hallers B, Hastie A, Michael TP, Mockler TC. PMID: 26560029.
      View in: PubMed   Mentions: 138     Fields:    Translation:AnimalsCells
    64. Progress, challenges and the future of crop genomes. Curr Opin Plant Biol. 2015 Apr; 24:71-81. Michael TP, VanBuren R. PMID: 25703261.
      View in: PubMed   Mentions: 79     Fields:    Translation:Animals
    65. Evolution of genome size and chromosome number in the carnivorous plant genus Genlisea (Lentibulariaceae), with a new estimate of the minimum genome size in angiosperms. Ann Bot. 2014 Dec; 114(8):1651-63. Fleischmann A, Michael TP, Rivadavia F, Sousa A, Wang W, Temsch EM, Greilhuber J, Müller KF, Heubl G. PMID: 25274549; PMCID: PMC4649684.
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    66. Plant genome size variation: bloating and purging DNA. Brief Funct Genomics. 2014 Jul; 13(4):308-17. Michael TP. PMID: 24651721.
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    67. Analysis of global gene expression in Brachypodium distachyon reveals extensive network plasticity in response to abiotic stress. PLoS One. 2014; 9(1):e87499. Priest HD, Fox SE, Rowley ER, Murray JR, Michael TP, Mockler TC. PMID: 24489928; PMCID: PMC3906199.
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    68. Duckweed in bloom: the 2nd International Conference on Duckweed Research and Applications heralds the return of a plant model for plant biology. Plant Mol Biol. 2014 Apr; 84(6):737-42. Lam E, Appenroth KJ, Michael T, Mori K, Fakhoorian T. PMID: 24398764.
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    69. The Spirodela polyrhiza genome reveals insights into its neotenous reduction fast growth and aquatic lifestyle. Nat Commun. 2014; 5:3311. Wang W, Haberer G, Gundlach H, Gläßer C, Nussbaumer T, Luo MC, Lomsadze A, Borodovsky M, Kerstetter RA, Shanklin J, Byrant DW, Mockler TC, Appenroth KJ, Grimwood J, Jenkins J, Chow J, Choi C, Adam C, Cao XH, Fuchs J, Schubert I, Rokhsar D, Schmutz J, Michael TP, Mayer KF, Messing J. PMID: 24548928; PMCID: PMC3948053.
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    70. Agriculture: Feeding the future. Nature. 2013 Jul 04; 499(7456):23-4. McCouch S, Baute GJ, Bradeen J, Bramel P, Bretting PK, Buckler E, Burke JM, Charest D, Cloutier S, Cole G, Dempewolf H, Dingkuhn M, Feuillet C, Gepts P, Grattapaglia D, Guarino L, Jackson S, Knapp S, Langridge P, Lawton-Rauh A, Lijua Q, Lusty C, Michael T, Myles S, Naito K, Nelson RL, Pontarollo R, Richards CM, Rieseberg L, Ross-Ibarra J, Rounsley S, Hamilton RS, Schurr U, Stein N, Tomooka N, van der Knaap E, van Tassel D, Toll J, Valls J, Varshney RK, Ward J, Waugh R, Wenzl P, Zamir D. PMID: 23823779.
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    71. Architecture and evolution of a minute plant genome. Nature. 2013 Jun 06; 498(7452):94-8. Ibarra-Laclette E, Lyons E, Hernández-Guzmán G, Pérez-Torres CA, Carretero-Paulet L, Chang TH, Lan T, Welch AJ, Juárez MJ, Simpson J, Fernández-Cortés A, Arteaga-Vázquez M, Góngora-Castillo E, Acevedo-Hernández G, Schuster SC, Himmelbauer H, Minoche AE, Xu S, Lynch M, Oropeza-Aburto A, Cervantes-Pérez SA, de Jesús Ortega-Estrada M, Cervantes-Luevano JI, Michael TP, Mockler T, Bryant D, Herrera-Estrella A, Albert VA, Herrera-Estrella L. PMID: 23665961; PMCID: PMC4972453.
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    72. Genome of the long-living sacred lotus (Nelumbo nucifera Gaertn.). Genome Biol. 2013 May 10; 14(5):R41. Ming R, VanBuren R, Liu Y, Yang M, Han Y, Li LT, Zhang Q, Kim MJ, Schatz MC, Campbell M, Li J, Bowers JE, Tang H, Lyons E, Ferguson AA, Narzisi G, Nelson DR, Blaby-Haas CE, Gschwend AR, Jiao Y, Der JP, Zeng F, Han J, Min XJ, Hudson KA, Singh R, Grennan AK, Karpowicz SJ, Watling JR, Ito K, Robinson SA, Hudson ME, Yu Q, Mockler TC, Carroll A, Zheng Y, Sunkar R, Jia R, Chen N, Arro J, Wai CM, Wafula E, Spence A, Han Y, Xu L, Zhang J, Peery R, Haus MJ, Xiong W, Walsh JA, Wu J, Wang ML, Zhu YJ, Paull RE, Britt AB, Du C, Downie SR, Schuler MA, Michael TP, Long SP, Ort DR, Schopf JW, Gang DR, Jiang N, Yandell M, dePamphilis CW, Merchant SS, Paterson AH, Buchanan BB, Li S, Shen-Miller J. PMID: 23663246; PMCID: PMC4053705.
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    73. Integrative analysis of chromatin states in Arabidopsis identified potential regulatory mechanisms for natural antisense transcript production. Plant J. 2013 Jan; 73(1):77-90. Luo C, Sidote DJ, Zhang Y, Kerstetter RA, Michael TP, Lam E. PMID: 22962860.
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    74. The tomato genome fleshed out. Nat Biotechnol. 2012 Aug; 30(8):765-7. Michael TP, Alba R. PMID: 22871715.
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    75. Draft genome sequence of pigeonpea (Cajanus cajan), an orphan legume crop of resource-poor farmers. Nat Biotechnol. 2011 Nov 06; 30(1):83-9. Varshney RK, Chen W, Li Y, Bharti AK, Saxena RK, Schlueter JA, Donoghue MT, Azam S, Fan G, Whaley AM, Farmer AD, Sheridan J, Iwata A, Tuteja R, Penmetsa RV, Wu W, Upadhyaya HD, Yang SP, Shah T, Saxena KB, Michael T, McCombie WR, Yang B, Zhang G, Yang H, Wang J, Spillane C, Cook DR, May GD, Xu X, Jackson SA. PMID: 22057054.
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    76. Global profiling of rice and poplar transcriptomes highlights key conserved circadian-controlled pathways and cis-regulatory modules. PLoS One. 2011; 6(6):e16907. Filichkin SA, Breton G, Priest HD, Dharmawardhana P, Jaiswal P, Fox SE, Michael TP, Chory J, Kay SA, Mockler TC. PMID: 21694767; PMCID: PMC3111414.
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    77. Isolation and analysis of high quality nuclear DNA with reduced organellar DNA for plant genome sequencing and resequencing. BMC Biotechnol. 2011 May 20; 11:54. Lutz KA, Wang W, Zdepski A, Michael TP. PMID: 21599914; PMCID: PMC3131251.
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    78. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science. 2011 May 20; 332(6032):960-3. Banks JA, Nishiyama T, Hasebe M, Bowman JL, Gribskov M, dePamphilis C, Albert VA, Aono N, Aoyama T, Ambrose BA, Ashton NW, Axtell MJ, Barker E, Barker MS, Bennetzen JL, Bonawitz ND, Chapple C, Cheng C, Correa LG, Dacre M, DeBarry J, Dreyer I, Elias M, Engstrom EM, Estelle M, Feng L, Finet C, Floyd SK, Frommer WB, Fujita T, Gramzow L, Gutensohn M, Harholt J, Hattori M, Heyl A, Hirai T, Hiwatashi Y, Ishikawa M, Iwata M, Karol KG, Koehler B, Kolukisaoglu U, Kubo M, Kurata T, Lalonde S, Li K, Li Y, Litt A, Lyons E, Manning G, Maruyama T, Michael TP, Mikami K, Miyazaki S, Morinaga S, Murata T, Mueller-Roeber B, Nelson DR, Obara M, Oguri Y, Olmstead RG, Onodera N, Petersen BL, Pils B, Prigge M, Rensing SA, Riaño-Pachón DM, Roberts AW, Sato Y, Scheller HV, Schulz B, Schulz C, Shakirov EV, Shibagaki N, Shinohara N, Shippen DE, Sørensen I, Sotooka R, Sugimoto N, Sugita M, Sumikawa N, Tanurdzic M, Theissen G, Ulvskov P, Wakazuki S, Weng JK, Willats WW, Wipf D, Wolf PG, Yang L, Zimmer AD, Zhu Q, Mitros T, Hellsten U, Loqué D, Otillar R, Salamov A, Schmutz J, Shapiro H, Lindquist E, Lucas S, Rokhsar D, Grigoriev IV. PMID: 21551031; PMCID: PMC3166216.
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    79. The genome of woodland strawberry (Fragaria vesca). Nat Genet. 2011 Feb; 43(2):109-16. Shulaev V, Sargent DJ, Crowhurst RN, Mockler TC, Folkerts O, Delcher AL, Jaiswal P, Mockaitis K, Liston A, Mane SP, Burns P, Davis TM, Slovin JP, Bassil N, Hellens RP, Evans C, Harkins T, Kodira C, Desany B, Crasta OR, Jensen RV, Allan AC, Michael TP, Setubal JC, Celton JM, Rees DJ, Williams KP, Holt SH, Ruiz Rojas JJ, Chatterjee M, Liu B, Silva H, Meisel L, Adato A, Filichkin SA, Troggio M, Viola R, Ashman TL, Wang H, Dharmawardhana P, Elser J, Raja R, Priest HD, Bryant DW, Fox SE, Givan SA, Wilhelm LJ, Naithani S, Christoffels A, Salama DY, Carter J, Lopez Girona E, Zdepski A, Wang W, Kerstetter RA, Schwab W, Korban SS, Davik J, Monfort A, Denoyes-Rothan B, Arus P, Mittler R, Flinn B, Aharoni A, Bennetzen JL, Salzberg SL, Dickerman AW, Velasco R, Borodovsky M, Veilleux RE, Folta KM. PMID: 21186353; PMCID: PMC3326587.
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    80. Type II protein arginine methyltransferase 5 (PRMT5) is required for circadian period determination in Arabidopsis thaliana. Proc Natl Acad Sci U S A. 2010 Dec 07; 107(49):21211-6. Hong S, Song HR, Lutz K, Kerstetter RA, Michael TP, McClung CR. PMID: 21097700; PMCID: PMC3000274.
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    81. SOPRA: Scaffolding algorithm for paired reads via statistical optimization. BMC Bioinformatics. 2010 Jun 24; 11:345. Dayarian A, Michael TP, Sengupta AM. PMID: 20576136; PMCID: PMC2909219.
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    82. Genome-wide association study of 107 phenotypes in Arabidopsis thaliana inbred lines. Nature. 2010 Jun 03; 465(7298):627-31. Atwell S, Huang YS, Vilhjálmsson BJ, Willems G, Horton M, Li Y, Meng D, Platt A, Tarone AM, Hu TT, Jiang R, Muliyati NW, Zhang X, Amer MA, Baxter I, Brachi B, Chory J, Dean C, Debieu M, de Meaux J, Ecker JR, Faure N, Kniskern JM, Jones JD, Michael T, Nemri A, Roux F, Salt DE, Tang C, Todesco M, Traw MB, Weigel D, Marjoram P, Borevitz JO, Bergelson J, Nordborg M. PMID: 20336072; PMCID: PMC3023908.
      View in: PubMed   Mentions: 780     Fields:    Translation:Animals
    83. Filtering error from SOLiD Output. Bioinformatics. 2010 Mar 15; 26(6):849-50. Sasson A, Michael TP. PMID: 20207696.
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    84. The carnivorous bladderwort (Utricularia, Lentibulariaceae): a system inflates. J Exp Bot. 2010; 61(1):5-9. Albert VA, Jobson RW, Michael TP, Taylor DJ. PMID: 20007200.
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    85. An SSR-based genetic linkage map of the model grass Brachypodium distachyon. Genome. 2010 Jan; 53(1):1-13. Garvin DF, McKenzie N, Vogel JP, Mockler TC, Blankenheim ZJ, Wright J, Cheema JJ, Dicks J, Huo N, Hayden DM, Gu Y, Tobias C, Chang JH, Chu A, Trick M, Michael TP, Bevan MW, Snape JW. PMID: 20130744.
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    86. Cis-regulatory changes at FLOWERING LOCUS T mediate natural variation in flowering responses of Arabidopsis thaliana. Genetics. 2009 Oct; 183(2):723-32, 1SI-7SI. Schwartz C, Balasubramanian S, Warthmann N, Michael TP, Lempe J, Sureshkumar S, Kobayashi Y, Maloof JN, Borevitz JO, Chory J, Weigel D. PMID: 19652183; PMCID: PMC2766330.
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    87. Cytochrome P450 monooxygenases as reporters for circadian-regulated pathways. Plant Physiol. 2009 Jun; 150(2):858-78. Pan Y, Michael TP, Hudson ME, Kay SA, Chory J, Schuler MA. PMID: 19386812; PMCID: PMC2689971.
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    88. Conserved Daily Transcriptional Programs in Carica papaya. Trop Plant Biol. 2008 Dec; 1(3-4):236-245. Zdepski A, Wang W, Priest HD, Ali F, Alam M, Mockler TC, Michael TP. PMID: 20671772; PMCID: PMC2890329.
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    89. A zinc knuckle protein that negatively controls morning-specific growth in Arabidopsis thaliana. Proc Natl Acad Sci U S A. 2008 Nov 04; 105(44):17193-8. Loudet O, Michael TP, Burger BT, Le Metté C, Mockler TC, Weigel D, Chory J. PMID: 18971337; PMCID: PMC2579400.
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    90. A morning-specific phytohormone gene expression program underlying rhythmic plant growth. PLoS Biol. 2008 Sep 16; 6(9):e225. Michael TP, Breton G, Hazen SP, Priest H, Mockler TC, Kay SA, Chory J. PMID: 18798691; PMCID: PMC2535664.
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    91. The draft genome of the transgenic tropical fruit tree papaya (Carica papaya Linnaeus). Nature. 2008 Apr 24; 452(7190):991-6. Ming R, Hou S, Feng Y, Yu Q, Dionne-Laporte A, Saw JH, Senin P, Wang W, Ly BV, Lewis KL, Salzberg SL, Feng L, Jones MR, Skelton RL, Murray JE, Chen C, Qian W, Shen J, Du P, Eustice M, Tong E, Tang H, Lyons E, Paull RE, Michael TP, Wall K, Rice DW, Albert H, Wang ML, Zhu YJ, Schatz M, Nagarajan N, Acob RA, Guan P, Blas A, Wai CM, Ackerman CM, Ren Y, Liu C, Wang J, Wang J, Na JK, Shakirov EV, Haas B, Thimmapuram J, Nelson D, Wang X, Bowers JE, Gschwend AR, Delcher AL, Singh R, Suzuki JY, Tripathi S, Neupane K, Wei H, Irikura B, Paidi M, Jiang N, Zhang W, Presting G, Windsor A, Navajas-Pérez R, Torres MJ, Feltus FA, Porter B, Li Y, Burroughs AM, Luo MC, Liu L, Christopher DA, Mount SM, Moore PH, Sugimura T, Jiang J, Schuler MA, Friedman V, Mitchell-Olds T, Shippen DE, dePamphilis CW, Palmer JD, Freeling M, Paterson AH, Gonsalves D, Wang L, Alam M. PMID: 18432245; PMCID: PMC2836516.
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    92. Network discovery pipeline elucidates conserved time-of-day-specific cis-regulatory modules. PLoS Genet. 2008 Feb; 4(2):e14. Michael TP, Mockler TC, Breton G, McEntee C, Byer A, Trout JD, Hazen SP, Shen R, Priest HD, Sullivan CM, Givan SA, Yanovsky M, Hong F, Kay SA, Chory J. PMID: 18248097; PMCID: PMC2222925.
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    93. Simple sequence repeats provide a substrate for phenotypic variation in the Neurospora crassa circadian clock. PLoS One. 2007 Aug 29; 2(8):e795. Michael TP, Park S, Kim TS, Booth J, Byer A, Sun Q, Chory J, Lee K. PMID: 17726525; PMCID: PMC1949147.
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    94. Genome-wide patterns of single-feature polymorphism in Arabidopsis thaliana. Proc Natl Acad Sci U S A. 2007 Jul 17; 104(29):12057-62. Borevitz JO, Hazen SP, Michael TP, Morris GP, Baxter IR, Hu TT, Chen H, Werner JD, Nordborg M, Salt DE, Kay SA, Chory J, Weigel D, Jones JD, Ecker JR. PMID: 17626786; PMCID: PMC1914337.
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    95. The DIURNAL project: DIURNAL and circadian expression profiling, model-based pattern matching, and promoter analysis. Cold Spring Harb Symp Quant Biol. 2007; 72:353-63. Mockler TC, Michael TP, Priest HD, Shen R, Sullivan CM, Givan SA, McEntee C, Kay SA, Chory J. PMID: 18419293.
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    96. The PHYTOCHROME C photoreceptor gene mediates natural variation in flowering and growth responses of Arabidopsis thaliana. Nat Genet. 2006 Jun; 38(6):711-5. Balasubramanian S, Sureshkumar S, Agrawal M, Michael TP, Wessinger C, Maloof JN, Clark R, Warthmann N, Chory J, Weigel D. PMID: 16732287; PMCID: PMC1592229.
      View in: PubMed   Mentions: 103     Fields:    Translation:Animals
    97. Regulation of flowering time in Arabidopsis by K homology domain proteins. Proc Natl Acad Sci U S A. 2004 Aug 24; 101(34):12759-64. Mockler TC, Yu X, Shalitin D, Parikh D, Michael TP, Liou J, Huang J, Smith Z, Alonso JM, Ecker JR, Chory J, Lin C. PMID: 15310842; PMCID: PMC515126.
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    98. Enhanced fitness conferred by naturally occurring variation in the circadian clock. Science. 2003 Nov 07; 302(5647):1049-53. Michael TP, Salomé PA, Yu HJ, Spencer TR, Sharp EL, McPeek MA, Alonso JM, Ecker JR, McClung CR. PMID: 14605371.
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    99. Enhancer trapping reveals widespread circadian clock transcriptional control in Arabidopsis. Plant Physiol. 2003 Jun; 132(2):629-39. Michael TP, McClung CR. PMID: 12805593; PMCID: PMC167003.
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    100. Two Arabidopsis circadian oscillators can be distinguished by differential temperature sensitivity. Proc Natl Acad Sci U S A. 2003 May 27; 100(11):6878-83. Michael TP, Salome PA, McClung CR. PMID: 12736379; PMCID: PMC164540.
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    101. Phase-specific circadian clock regulatory elements in Arabidopsis. Plant Physiol. 2002 Oct; 130(2):627-38. Michael TP, McClung CR. PMID: 12376630; PMCID: PMC166592.
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    102. The out of phase 1 mutant defines a role for PHYB in circadian phase control in Arabidopsis. Plant Physiol. 2002 Aug; 129(4):1674-85. Salomé PA, Michael TP, Kearns EV, Fett-Neto AG, Sharrock RA, McClung CR. PMID: 12177480; PMCID: PMC166755.
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    103. The Arabidopsis circadian system. Arabidopsis Book. 2002; 1:e0044. McClung CR, Salomé PA, Michael TP. PMID: 22303209; PMCID: PMC3243369.
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    104. Efficacy and tolerability of tolterodine in children with detrusor hyperreflexia. Urology. 2000 Mar; 55(3):414-8. Goessl C, Sauter T, Michael T, Bergé B, Staehler M, Miller K. PMID: 10699623.
      View in: PubMed   Mentions: 11     Fields:    Translation:HumansCTClinical Trials
    105. The plant oncogenes rolA, B, and C from Agrobacterium rhizogenes. Effects on morphology, development, and hormone metabolism. Methods Mol Biol. 1995; 44:207-22. Michael T, Spena A. PMID: 7581667.
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