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Allopolyploid origin and diversification of the Hawaiian endemic mints. Nat Commun. 2024 Apr 10; 15(1):3109.
Tomlin CM, Rajaraman S, Sebesta JT, Scheen AC, Bendiksby M, Low YW, Salojärvi J, Michael TP, Albert VA, Lindqvist C. PMID: 38600100; PMCID: PMC11006916.
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Genetic Mapping, Identification, and Characterization of a Candidate Susceptibility Gene for Powdery Mildew in Cannabis sativa. Mol Plant Microbe Interact. 2024 Jan; 37(1):51-61.
Stack GM, Cala AR, Quade MA, Toth JA, Monserrate LA, Wilkerson DG, Carlson CH, Mamerto A, Michael TP, Crawford S, Smart CD, Smart LB. PMID: 37750850.
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PubMed Mentions:
1 Fields:
Translation:
Animals
-
Unusual predominance of maintenance DNA methylation in Spirodela polyrhiza. G3 (Bethesda). 2024 Jan 08.
Harkess A, Bewick AJ, Lu Z, Fourounjian P, Michael TP, Schmitz RJ, Meyers BC. PMID: 38190722.
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PubMed Mentions: Fields:
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Biosynthesis of Haloterpenoids in Red Algae via Microbial-like Type I Terpene Synthases. ACS Chem Biol. 2024 Jan 19; 19(1):185-192.
Steele TS, Burkhardt I, Moore ML, de Rond T, Bone HK, Barry K, Bunting VM, Grimwood J, Handley LH, Rajasekar S, Talag J, Michael TP, Moore BS. PMID: 38081799.
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PubMed Mentions: Fields:
Translation:
Animals
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Generating high-quality plant and fish reference genomes from field-collected specimens by optimizing preservation. Commun Biol. 2023 12 09; 6(1):1246.
Minich JJ, Moore ML, Allsing NA, Aylward A, Murray ER, Tran L, Michael TP. PMID: 38071270; PMCID: PMC10710401.
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PubMed Mentions: Translation:
Animals
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Subgenome dominance shapes novel gene evolution in the decaploid pitcher plant Nepenthes gracilis. Nat Plants. 2023 12; 9(12):2000-2015.
Saul F, Scharmann M, Wakatake T, Rajaraman S, Marques A, Freund M, Bringmann G, Channon L, Becker D, Carroll E, Low YW, Lindqvist C, Gilbert KJ, Renner T, Masuda S, Richter M, Vogg G, Shirasu K, Michael TP, Hedrich R, Albert VA, Fukushima K. PMID: 37996654.
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PubMed Mentions:
1 Fields:
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PanKmer: k-mer-based and reference-free pangenome analysis. Bioinformatics. 2023 10 03; 39(10).
Aylward AJ, Petrus S, Mamerto A, Hartwick NT, Michael TP. PMID: 37846049; PMCID: PMC10603592.
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PubMed Mentions: Fields:
Translation:
HumansAnimals
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Genomics of turions from the Greater Duckweed reveal its pathways for dormancy and re-emergence strategy. New Phytol. 2023 07; 239(1):116-131.
Pasaribu B, Acosta K, Aylward A, Liang Y, Abramson BW, Colt K, Hartwick NT, Shanklin J, Michael TP, Lam E. PMID: 37149888.
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PubMed Mentions:
3 Fields:
Translation:
Animals
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Porcine reproductive and respiratory syndrome virus degrades DDX10 via SQSTM1/p62-dependent selective autophagy to antagonize its antiviral activity. Autophagy. 2023 08; 19(8):2257-2274.
Li J, Zhou Y, Zhao W, Liu J, Ullah R, Fang P, Fang L, Xiao S. PMID: 36779599; PMCID: PMC10351467.
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PubMed Mentions:
3 Fields:
Translation:
AnimalsCells
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Optimization of Molecular Methods for Detecting Duckweed-Associated Bacteria. Plants (Basel). 2023 Feb 15; 12(4).
Acosta K, Sorrels S, Chrisler W, Huang W, Gilbert S, Brinkman T, Michael TP, Lebeis SL, Lam E. PMID: 36840219; PMCID: PMC9965182.
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PubMed Mentions:
1
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The phylogenomics and evolutionary dynamics of the organellar genomes in carnivorous Utricularia and Genlisea species (Lentibulariaceae). Mol Phylogenet Evol. 2023 04; 181:107711.
Silva SR, Miranda VFO, Michael TP, Plachno BJ, Matos RG, Adamec L, Pond SLK, Lucaci AG, Pinheiro DG, Varani AM. PMID: 36693533.
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PubMed Mentions:
2 Fields:
Translation:
Animals
-
[Determination of organophosphate diesters in facility vegetable soils using ultra-high performance liquid chromatography-electrostatic field orbitrap high resolution mass spectrometry]. Se Pu. 2023 Jan; 41(1):58-65.
Liu M, Wang M, Zhao A, Zhu L, Wang C, Wei C, Liu W, Xu J. PMID: 36633077.
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PubMed Mentions: Fields:
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Time of Day Analysis over a Field Grown Developmental Time Course in Rice. Plants (Basel). 2022 Dec 30; 12(1).
Michael TP. PMID: 36616295.
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PubMed Mentions:
1
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Host biology, ecology and the environment influence microbial biomass and diversity in 101 marine fish species. Nat Commun. 2022 11 17; 13(1):6978.
Minich JJ, Härer A, Vechinski J, Frable BW, Skelton ZR, Kunselman E, Shane MA, Perry DS, Gonzalez A, McDonald D, Knight R, Michael TP, Allen EE. PMID: 36396943; PMCID: PMC9671965.
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PubMed Mentions:
9 Fields:
Translation:
Animals
-
Evolutionary gain and loss of a plant pattern-recognition receptor for HAMP recognition. Elife. 2022 11 15; 11.
Snoeck S, Abramson BW, Garcia AGK, Egan AN, Michael TP, Steinbrenner AD. PMID: 36377784; PMCID: PMC9718524.
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PubMed Mentions:
3 Fields:
Translation:
Animals
-
Core circadian clock and light signaling genes brought into genetic linkage across the green lineage. Plant Physiol. 2022 09 28; 190(2):1037-1056.
Michael TP. PMID: 35674369; PMCID: PMC9516744.
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PubMed Mentions:
2 Fields:
Translation:
HumansAnimals
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Characterization of defense responses against bacterial pathogens in duckweeds lacking EDS1. New Phytol. 2022 Dec; 236(5):1838-1855.
Baggs EL, Tiersma MB, Abramson BW, Michael TP, Krasileva KV. PMID: 36052715.
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PubMed Mentions:
2 Fields:
Translation:
Animals
-
Genomic insights into rapid speciation within the world's largest tree genus Syzygium. Nat Commun. 2022 09 12; 13(1):5031.
Low YW, Rajaraman S, Tomlin CM, Ahmad JA, Ardi WH, Armstrong K, Athen P, Berhaman A, Bone RE, Cheek M, Cho NRW, Choo LM, Cowie ID, Crayn D, Fleck SJ, Ford AJ, Forster PI, Girmansyah D, Goyder DJ, Gray B, Heatubun CD, Ibrahim A, Ibrahim B, Jayasinghe HD, Kalat MA, Kathriarachchi HS, Kintamani E, Koh SL, Lai JTK, Lee SML, Leong PKF, Lim WH, Lum SKY, Mahyuni R, McDonald WJF, Metali F, Mustaqim WA, Naiki A, Ngo KM, Niissalo M, Ranasinghe S, Repin R, Rustiami H, Simbiak VI, Sukri RS, Sunarti S, Trethowan LA, Trias-Blasi A, Vasconcelos TNC, Wanma JF, Widodo P, Wijesundara DSA, Worboys S, Yap JW, Yong KT, Khew GSW, Salojärvi J, Michael TP, Middleton DJ, Burslem DFRP, Lindqvist C, Lucas EJ, Albert VA. PMID: 36097018; PMCID: PMC9468008.
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PubMed Mentions:
4 Fields:
Translation:
Animals
-
Retraction Note: Selective inheritance of target genes from only one parent of sexually reproduced F1 progeny in Arabidopsis. Nat Commun. 2022 06 07; 13(1):3270.
Zhang T, Mudgett M, Rambabu R, Abramson B, Dai X, Michael TP, Zhao Y. PMID: 35672322; PMCID: PMC9174252.
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PubMed Mentions:
2 Fields:
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Contrasting a reference cranberry genome to a crop wild relative provides insights into adaptation, domestication, and breeding. PLoS One. 2022; 17(3):e0264966.
Kawash J, Colt K, Hartwick NT, Abramson BW, Vorsa N, Polashock JJ, Michael TP. PMID: 35255111; PMCID: PMC8901128.
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PubMed Mentions:
7 Fields:
Translation:
Animals
-
The complete mitochondrial genome of carnivorous Genlisea tuberosa (Lentibulariaceae): Structure and evolutionary aspects. Gene. 2022 May 25; 824:146391.
Matos RG, Silva SR, Plachno BJ, Adamec L, Michael TP, Varani AM, Miranda VFO. PMID: 35259463.
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PubMed Mentions: Fields:
Translation:
Animals
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The genome and preliminary single-nuclei transcriptome of Lemna minuta reveals mechanisms of invasiveness. Plant Physiol. 2022 02 04; 188(2):879-897.
Abramson BW, Novotny M, Hartwick NT, Colt K, Aevermann BD, Scheuermann RH, Michael TP. PMID: 34893913; PMCID: PMC8825320.
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PubMed Mentions:
6 Fields:
Translation:
AnimalsCells
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Chromosome-Level Genome Assembly of a Human Fungal Pathogen Reveals Synteny among Geographically Distinct Species. mBio. 2022 02 22; 13(1):e0257421.
Voorhies M, Cohen S, Shea TP, Petrus S, Muñoz JF, Poplawski S, Goldman WE, Michael TP, Cuomo CA, Sil A, Beyhan S. PMID: 35089059; PMCID: PMC8725592.
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PubMed Mentions:
7 Fields:
Translation:
HumansAnimalsCells
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Wolffia, a minimalist plant and synthetic biology chassis. Trends Plant Sci. 2022 05; 27(5):430-439.
Lam E, Michael TP. PMID: 34920947.
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Translation:
Animals
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The genetic and epigenetic landscape of the Arabidopsis centromeres. Science. 2021 Nov 12; 374(6569):eabi7489.
Naish M, Alonge M, Wlodzimierz P, Tock AJ, Abramson BW, Schmücker A, Mandáková T, Jamge B, Lambing C, Kuo P, Yelina N, Hartwick N, Colt K, Smith LM, Ton J, Kakutani T, Martienssen RA, Schneeberger K, Lysak MA, Berger F, Bousios A, Michael TP, Schatz MC, Henderson IR. PMID: 34762468; PMCID: PMC10164409.
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PubMed Mentions:
95 Fields:
Translation:
AnimalsCells
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Large structural variations in the haplotype-resolved African cassava genome. Plant J. 2021 12; 108(6):1830-1848.
Mansfeld BN, Boyher A, Berry JC, Wilson M, Ou S, Polydore S, Michael TP, Fahlgren N, Bart RS. PMID: 34661327; PMCID: PMC9299708.
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PubMed Mentions:
11 Fields:
Translation:
AnimalsCells
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Underwater CAM photosynthesis elucidated by Isoetes genome. Nat Commun. 2021 11 03; 12(1):6348.
Wickell D, Kuo LY, Yang HP, Dhabalia Ashok A, Irisarri I, Dadras A, de Vries S, de Vries J, Huang YM, Li Z, Barker MS, Hartwick NT, Michael TP, Li FW. PMID: 34732722; PMCID: PMC8566536.
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PubMed Mentions:
31 Fields:
Translation:
AnimalsCells
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Return of the Lemnaceae: duckweed as a model plant system in the genomics and postgenomics era. Plant Cell. 2021 10 11; 33(10):3207-3234.
Acosta K, Appenroth KJ, Borisjuk L, Edelman M, Heinig U, Jansen MAK, Oyama T, Pasaribu B, Schubert I, Sorrels S, Sree KS, Xu S, Michael TP, Lam E. PMID: 34273173; PMCID: PMC8505876.
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PubMed Mentions:
51 Fields:
Translation:
Animals
-
Selective inheritance of target genes from only one parent of sexually reproduced F1 progeny in Arabidopsis. Nat Commun. 2021 06 22; 12(1):3854.
Zhang T, Mudgett M, Rambabu R, Abramson B, Dai X, Michael TP, Zhao Y. PMID: 34158505; PMCID: PMC8219824.
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PubMed Mentions:
9 Fields:
Translation:
AnimalsCells
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Horizontal transfer and evolution of wall teichoic acid gene cassettes in Bacillus subtilis. F1000Res. 2021; 10:354.
Sutton G, Fogel GB, Abramson B, Brinkac L, Michael T, Liu ES, Thomas S. PMID: 35035886; PMCID: PMC8753576.
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PubMed Mentions:
1 Fields:
Translation:
Cells
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A pan-genome method to determine core regions of the Bacillus subtilis and Escherichia coli genomes. F1000Res. 2021; 10:286.
Sutton G, Fogel GB, Abramson B, Brinkac L, Michael T, Liu ES, Thomas S. PMID: 34113437; PMCID: PMC8156514.
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PubMed Mentions:
3 Fields:
Translation:
Cells
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Improved Spirodela polyrhiza genome and proteomic analyses reveal a conserved chromosomal structure with high abundance of chloroplastic proteins favoring energy production. J Exp Bot. 2021 03 29; 72(7):2491-2500.
Harkess A, McLoughlin F, Bilkey N, Elliott K, Emenecker R, Mattoon E, Miller K, Czymmek K, Vierstra RD, Meyers BC, Michael TP. PMID: 33454741.
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PubMed Mentions:
14 Fields:
Translation:
Animals
-
A new Cannabis genome assembly associates elevated cannabidiol (CBD) with hemp introgressed into marijuana. New Phytol. 2021 05; 230(4):1665-1679.
Grassa CJ, Weiblen GD, Wenger JP, Dabney C, Poplawski SG, Timothy Motley S, Michael TP, Schwartz CJ. PMID: 33521943; PMCID: PMC8248131.
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PubMed Mentions:
42 Fields:
Translation:
Animals
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Genome and time-of-day transcriptome of Wolffia australiana link morphological minimization with gene loss and less growth control. Genome Res. 2021 Feb; 31(2):225-238.
Michael TP, Ernst E, Hartwick N, Chu P, Bryant D, Gilbert S, Ortleb S, Baggs EL, Sree KS, Appenroth KJ, Fuchs J, Jupe F, Sandoval JP, Krasileva KV, Borisjuk L, Mockler TC, Ecker JR, Martienssen RA, Lam E. PMID: 33361111; PMCID: PMC7849404.
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PubMed Mentions:
27 Fields:
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Injury, Illness, and Mental Health Risks in United States Domestic Mariners. J Occup Environ Med. 2020 10; 62(10):839-841.
Lefkowitz RY, Null DB, Slade MD, Redlich CA. PMID: 32769797.
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PubMed Mentions:
5 Fields:
Translation:
Humans
-
Gross Chromosomal Rearrangements in Kluyveromyces marxianus Revealed by Illumina and Oxford Nanopore Sequencing. Int J Mol Sci. 2020 Sep 26; 21(19).
Ding L, Macdonald HD, Smith HO, Hutchison Iii CA, Merryman C, Michael TP, Abramson BW, Kannan K, Liang J, Gill J, Gibson DG, Glass JI. PMID: 32993167; PMCID: PMC7582981.
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PubMed Mentions: Fields:
Translation:
AnimalsCells
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Gapless assembly of maize chromosomes using long-read technologies. Genome Biol. 2020 05 20; 21(1):121.
Liu J, Seetharam AS, Chougule K, Ou S, Swentowsky KW, Gent JI, Llaca V, Woodhouse MR, Manchanda N, Presting GG, Kudrna DA, Alabady M, Hirsch CN, Fengler KA, Ware D, Michael TP, Hufford MB, Dawe RK. PMID: 32434565; PMCID: PMC7238635.
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PubMed Mentions:
47 Fields:
Translation:
AnimalsCells
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Temporal, Environmental, and Biological Drivers of the Mucosal Microbiome in a Wild Marine Fish, Scomber japonicus. mSphere. 2020 05 20; 5(3).
Minich JJ, Petrus S, Michael JD, Michael TP, Knight R, Allen EE. PMID: 32434844; PMCID: PMC7380571.
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PubMed Mentions:
17 Fields:
Translation:
Animals
-
Changes in ambient temperature are the prevailing cue in determining Brachypodium distachyon diurnal gene regulation. New Phytol. 2020 09; 227(6):1709-1724.
MacKinnon KJ, Cole BJ, Yu C, Coomey JH, Hartwick NT, Remigereau MS, Duffy T, Michael TP, Kay SA, Hazen SP. PMID: 32112414.
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PubMed Mentions:
4 Fields:
Translation:
Animals
-
Imaging examination, diagnosis, and control and prevention of nosocomial infection for coronavirus disease 2019: Expert consensus of Hunan radiologist. Zhong Nan Da Xue Xue Bao Yi Xue Ban. 2020 Mar 28; 45(3):221-228.
Liu J, Wang W. PMID: 32386011.
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PubMed Mentions:
2 Fields:
Translation:
HumansCellsPHPublic Health
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An Antisense Oligonucleotide Leads to Suppressed Transcription of Hdac2 and Long-Term Memory Enhancement. Mol Ther Nucleic Acids. 2020 Mar 06; 19:1399-1412.
Poplawski SG, Garbett KA, McMahan RL, Kordasiewicz HB, Zhao H, Kennedy AJ, Goleva SB, Sanders TH, Motley ST, Swayze EE, Ecker DJ, Sweatt JD, Michael TP, Greer CB. PMID: 32160709; PMCID: PMC7047133.
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PubMed Mentions:
10
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Exceptional subgenome stability and functional divergence in the allotetraploid Ethiopian cereal teff. Nat Commun. 2020 02 14; 11(1):884.
VanBuren R, Man Wai C, Wang X, Pardo J, Yocca AE, Wang H, Chaluvadi SR, Han G, Bryant D, Edger PP, Messing J, Sorrells ME, Mockler TC, Bennetzen JL, Michael TP. PMID: 32060277; PMCID: PMC7021729.
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PubMed Mentions:
54 Fields:
Translation:
Animals
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Building near-complete plant genomes. Curr Opin Plant Biol. 2020 04; 54:26-33.
Michael TP, VanBuren R. PMID: 31981929.
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PubMed Mentions:
70 Fields:
Translation:
Cells
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The Terrestrial Carnivorous Plant Utricularia reniformis Sheds Light on Environmental and Life-Form Genome Plasticity. Int J Mol Sci. 2019 Dec 18; 21(1).
Silva SR, Moraes AP, Penha HA, Julião MHM, Domingues DS, Michael TP, Miranda VFO, Varani AM. PMID: 31861318; PMCID: PMC6982007.
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PubMed Mentions:
6 Fields:
Translation:
AnimalsCells
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Intraspecific Variation within the Utricularia amethystina Species Morphotypes Based on Chloroplast Genomes. Int J Mol Sci. 2019 Dec 05; 20(24).
Silva SR, Pinheiro DG, Penha HA, Plachno BJ, Michael TP, Meer EJ, Miranda VFO, Varani AM. PMID: 31817365; PMCID: PMC6940893.
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PubMed Mentions:
12 Fields:
Translation:
AnimalsCells
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Time of day and network reprogramming during drought induced CAM photosynthesis in Sedum album. PLoS Genet. 2019 06; 15(6):e1008209.
Wai CM, Weise SE, Ozersky P, Mockler TC, Michael TP, VanBuren R. PMID: 31199791; PMCID: PMC6594660.
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PubMed Mentions:
22 Fields:
Translation:
AnimalsCells
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Scalable Biosynthesis of the Seaweed Neurochemical, Kainic Acid. Angew Chem Int Ed Engl. 2019 06 17; 58(25):8454-8457.
Chekan JR, McKinnie SMK, Moore ML, Poplawski SG, Michael TP, Moore BS. PMID: 30995339; PMCID: PMC6574125.
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PubMed Mentions:
22 Fields:
Translation:
AnimalsCells
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Lycophyte plastid genomics: extreme variation in GC, gene and intron content and multiple inversions between a direct and inverted orientation of the rRNA repeat. New Phytol. 2019 04; 222(2):1061-1075.
Mower JP, Ma PF, Grewe F, Taylor A, Michael TP, VanBuren R, Qiu YL. PMID: 30556907; PMCID: PMC6590440.
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PubMed Mentions:
27 Fields:
Translation:
AnimalsCells
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The complex architecture and epigenomic impact of plant T-DNA insertions. PLoS Genet. 2019 01; 15(1):e1007819.
Jupe F, Rivkin AC, Michael TP, Zander M, Motley ST, Sandoval JP, Slotkin RK, Chen H, Castanon R, Nery JR, Ecker JR. PMID: 30657772; PMCID: PMC6338467.
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PubMed Mentions:
65 Fields:
Translation:
AnimalsCells
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Generating a high-confidence reference genome map of the Greater Duckweed by integration of cytogenomic, optical mapping, and Oxford Nanopore technologies. Plant J. 2018 11; 96(3):670-684.
Hoang PNT, Michael TP, Gilbert S, Chu P, Motley ST, Appenroth KJ, Schubert I, Lam E. PMID: 30054939.
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PubMed Mentions:
28 Fields:
Translation:
AnimalsCells
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Sequence-guided approach to genotyping plant clones and species using polymorphic NB-ARC-related genes. Plant Mol Biol. 2018 Oct; 98(3):219-231.
Chu P, Wilson GM, Michael TP, Vaiciunas J, Honig J, Lam E. PMID: 30191440.
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PubMed Mentions:
3 Fields:
Translation:
Animals
-
Elevated temperature drives kelp microbiome dysbiosis, while elevated carbon dioxide induces water microbiome disruption. PLoS One. 2018; 13(2):e0192772.
Minich JJ, Morris MM, Brown M, Doane M, Edwards MS, Michael TP, Dinsdale EA. PMID: 29474389; PMCID: PMC5825054.
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PubMed Mentions:
38 Fields:
Translation:
AnimalsPHPublic Health
-
High contiguity Arabidopsis thaliana genome assembly with a single nanopore flow cell. Nat Commun. 2018 02 07; 9(1):541.
Michael TP, Jupe F, Bemm F, Motley ST, Sandoval JP, Lanz C, Loudet O, Weigel D, Ecker JR. PMID: 29416032; PMCID: PMC5803254.
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PubMed Mentions:
132 Fields:
Translation:
AnimalsCells
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Extreme haplotype variation in the desiccation-tolerant clubmoss Selaginella lepidophylla. Nat Commun. 2018 01 02; 9(1):13.
VanBuren R, Wai CM, Ou S, Pardo J, Bryant D, Jiang N, Mockler TC, Edger P, Michael TP. PMID: 29296019; PMCID: PMC5750206.
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PubMed Mentions:
38 Fields:
Translation:
AnimalsCells
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Comparative genomic analysis of Genlisea (corkscrew plants-Lentibulariaceae) chloroplast genomes reveals an increasing loss of the ndh genes. PLoS One. 2018; 13(1):e0190321.
Silva SR, Michael TP, Meer EJ, Pinheiro DG, Varani AM, Miranda VFO. PMID: 29293597; PMCID: PMC5749785.
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PubMed Mentions:
7 Fields:
Translation:
AnimalsCells
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Development of microsatellite markers for the carnivorous plant Genlisea aurea (Lentibulariaceae) using genomics data of NGS. Mol Biol Rep. 2018 Feb; 45(1):57-61.
Aranguren-Díaz YC, Varani AM, Michael TP, Miranda VFO. PMID: 29275442.
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PubMed Mentions:
2 Fields:
Translation:
AnimalsCells
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Seed desiccation mechanisms co-opted for vegetative desiccation in the resurrection grass Oropetium thomaeum. Plant Cell Environ. 2017 Oct; 40(10):2292-2306.
VanBuren R, Wai CM, Zhang Q, Song X, Edger PP, Bryant D, Michael TP, Mockler TC, Bartels D. PMID: 28730594.
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PubMed Mentions:
19 Fields:
Translation:
AnimalsCells
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The mitochondrial genome of the terrestrial carnivorous plant Utricularia reniformis (Lentibulariaceae): Structure, comparative analysis and evolutionary landmarks. PLoS One. 2017; 12(7):e0180484.
Silva SR, Alvarenga DO, Aranguren Y, Penha HA, Fernandes CC, Pinheiro DG, Oliveira MT, Michael TP, Miranda VFO, Varani AM. PMID: 28723946; PMCID: PMC5516982.
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PubMed Mentions:
10 Fields:
Translation:
Animals
-
Comprehensive definition of genome features in Spirodela polyrhiza by high-depth physical mapping and short-read DNA sequencing strategies. Plant J. 2017 02; 89(3):617-635.
Michael TP, Bryant D, Gutierrez R, Borisjuk N, Chu P, Zhang H, Xia J, Zhou J, Peng H, El Baidouri M, Ten Hallers B, Hastie AR, Liang T, Acosta K, Gilbert S, McEntee C, Jackson SA, Mockler TC, Zhang W, Lam E. PMID: 27754575.
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PubMed Mentions:
47 Fields:
Translation:
AnimalsCells
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The Chloroplast Genome of Utricularia reniformis Sheds Light on the Evolution of the ndh Gene Complex of Terrestrial Carnivorous Plants from the Lentibulariaceae Family. PLoS One. 2016; 11(10):e0165176.
Silva SR, Diaz YC, Penha HA, Pinheiro DG, Fernandes CC, Miranda VF, Michael TP, Varani AM. PMID: 27764252; PMCID: PMC5072713.
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PubMed Mentions:
24 Fields:
Translation:
AnimalsCells
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Tcf4 Regulates Synaptic Plasticity, DNA Methylation, and Memory Function. Cell Rep. 2016 09 06; 16(10):2666-2685.
Kennedy AJ, Rahn EJ, Paulukaitis BS, Savell KE, Kordasiewicz HB, Wang J, Lewis JW, Posey J, Strange SK, Guzman-Karlsson MC, Phillips SE, Decker K, Motley ST, Swayze EE, Ecker DJ, Michael TP, Day JJ, Sweatt JD. PMID: 27568567; PMCID: PMC5710002.
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PubMed Mentions:
72 Fields:
Translation:
AnimalsCells
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The genome of black raspberry (Rubus occidentalis). Plant J. 2016 09; 87(6):535-47.
VanBuren R, Bryant D, Bushakra JM, Vining KJ, Edger PP, Rowley ER, Priest HD, Michael TP, Lyons E, Filichkin SA, Dossett M, Finn CE, Bassil NV, Mockler TC. PMID: 27228578.
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PubMed Mentions:
42 Fields:
Translation:
AnimalsCells
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Single-molecule sequencing of the desiccation-tolerant grass Oropetium thomaeum. Nature. 2015 Nov 26; 527(7579):508-11.
VanBuren R, Bryant D, Edger PP, Tang H, Burgess D, Challabathula D, Spittle K, Hall R, Gu J, Lyons E, Freeling M, Bartels D, Ten Hallers B, Hastie A, Michael TP, Mockler TC. PMID: 26560029.
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PubMed Mentions:
138 Fields:
Translation:
AnimalsCells
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Progress, challenges and the future of crop genomes. Curr Opin Plant Biol. 2015 Apr; 24:71-81.
Michael TP, VanBuren R. PMID: 25703261.
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PubMed Mentions:
79 Fields:
Translation:
Animals
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Evolution of genome size and chromosome number in the carnivorous plant genus Genlisea (Lentibulariaceae), with a new estimate of the minimum genome size in angiosperms. Ann Bot. 2014 Dec; 114(8):1651-63.
Fleischmann A, Michael TP, Rivadavia F, Sousa A, Wang W, Temsch EM, Greilhuber J, Müller KF, Heubl G. PMID: 25274549; PMCID: PMC4649684.
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PubMed Mentions:
47 Fields:
Translation:
AnimalsCells
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Plant genome size variation: bloating and purging DNA. Brief Funct Genomics. 2014 Jul; 13(4):308-17.
Michael TP. PMID: 24651721.
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PubMed Mentions:
54 Fields:
Translation:
Cells
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Analysis of global gene expression in Brachypodium distachyon reveals extensive network plasticity in response to abiotic stress. PLoS One. 2014; 9(1):e87499.
Priest HD, Fox SE, Rowley ER, Murray JR, Michael TP, Mockler TC. PMID: 24489928; PMCID: PMC3906199.
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PubMed Mentions:
39 Fields:
Translation:
AnimalsCells
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Duckweed in bloom: the 2nd International Conference on Duckweed Research and Applications heralds the return of a plant model for plant biology. Plant Mol Biol. 2014 Apr; 84(6):737-42.
Lam E, Appenroth KJ, Michael T, Mori K, Fakhoorian T. PMID: 24398764.
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PubMed Mentions:
21 Fields:
Translation:
AnimalsCellsPHPublic Health
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The Spirodela polyrhiza genome reveals insights into its neotenous reduction fast growth and aquatic lifestyle. Nat Commun. 2014; 5:3311.
Wang W, Haberer G, Gundlach H, Gläßer C, Nussbaumer T, Luo MC, Lomsadze A, Borodovsky M, Kerstetter RA, Shanklin J, Byrant DW, Mockler TC, Appenroth KJ, Grimwood J, Jenkins J, Chow J, Choi C, Adam C, Cao XH, Fuchs J, Schubert I, Rokhsar D, Schmutz J, Michael TP, Mayer KF, Messing J. PMID: 24548928; PMCID: PMC3948053.
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PubMed Mentions:
118 Fields:
Translation:
Animals
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Agriculture: Feeding the future. Nature. 2013 Jul 04; 499(7456):23-4.
McCouch S, Baute GJ, Bradeen J, Bramel P, Bretting PK, Buckler E, Burke JM, Charest D, Cloutier S, Cole G, Dempewolf H, Dingkuhn M, Feuillet C, Gepts P, Grattapaglia D, Guarino L, Jackson S, Knapp S, Langridge P, Lawton-Rauh A, Lijua Q, Lusty C, Michael T, Myles S, Naito K, Nelson RL, Pontarollo R, Richards CM, Rieseberg L, Ross-Ibarra J, Rounsley S, Hamilton RS, Schurr U, Stein N, Tomooka N, van der Knaap E, van Tassel D, Toll J, Valls J, Varshney RK, Ward J, Waugh R, Wenzl P, Zamir D. PMID: 23823779.
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PubMed Mentions:
164 Fields:
Translation:
HumansAnimals
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Architecture and evolution of a minute plant genome. Nature. 2013 Jun 06; 498(7452):94-8.
Ibarra-Laclette E, Lyons E, Hernández-Guzmán G, Pérez-Torres CA, Carretero-Paulet L, Chang TH, Lan T, Welch AJ, Juárez MJ, Simpson J, Fernández-Cortés A, Arteaga-Vázquez M, Góngora-Castillo E, Acevedo-Hernández G, Schuster SC, Himmelbauer H, Minoche AE, Xu S, Lynch M, Oropeza-Aburto A, Cervantes-Pérez SA, de Jesús Ortega-Estrada M, Cervantes-Luevano JI, Michael TP, Mockler T, Bryant D, Herrera-Estrella A, Albert VA, Herrera-Estrella L. PMID: 23665961; PMCID: PMC4972453.
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PubMed Mentions:
127 Fields:
Translation:
Animals
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Genome of the long-living sacred lotus (Nelumbo nucifera Gaertn.). Genome Biol. 2013 May 10; 14(5):R41.
Ming R, VanBuren R, Liu Y, Yang M, Han Y, Li LT, Zhang Q, Kim MJ, Schatz MC, Campbell M, Li J, Bowers JE, Tang H, Lyons E, Ferguson AA, Narzisi G, Nelson DR, Blaby-Haas CE, Gschwend AR, Jiao Y, Der JP, Zeng F, Han J, Min XJ, Hudson KA, Singh R, Grennan AK, Karpowicz SJ, Watling JR, Ito K, Robinson SA, Hudson ME, Yu Q, Mockler TC, Carroll A, Zheng Y, Sunkar R, Jia R, Chen N, Arro J, Wai CM, Wafula E, Spence A, Han Y, Xu L, Zhang J, Peery R, Haus MJ, Xiong W, Walsh JA, Wu J, Wang ML, Zhu YJ, Paull RE, Britt AB, Du C, Downie SR, Schuler MA, Michael TP, Long SP, Ort DR, Schopf JW, Gang DR, Jiang N, Yandell M, dePamphilis CW, Merchant SS, Paterson AH, Buchanan BB, Li S, Shen-Miller J. PMID: 23663246; PMCID: PMC4053705.
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PubMed Mentions:
163 Fields:
Translation:
Animals
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Integrative analysis of chromatin states in Arabidopsis identified potential regulatory mechanisms for natural antisense transcript production. Plant J. 2013 Jan; 73(1):77-90.
Luo C, Sidote DJ, Zhang Y, Kerstetter RA, Michael TP, Lam E. PMID: 22962860.
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PubMed Mentions:
75 Fields:
Translation:
AnimalsCells
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The tomato genome fleshed out. Nat Biotechnol. 2012 Aug; 30(8):765-7.
Michael TP, Alba R. PMID: 22871715.
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PubMed Mentions:
2 Fields:
Translation:
AnimalsCells
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Draft genome sequence of pigeonpea (Cajanus cajan), an orphan legume crop of resource-poor farmers. Nat Biotechnol. 2011 Nov 06; 30(1):83-9.
Varshney RK, Chen W, Li Y, Bharti AK, Saxena RK, Schlueter JA, Donoghue MT, Azam S, Fan G, Whaley AM, Farmer AD, Sheridan J, Iwata A, Tuteja R, Penmetsa RV, Wu W, Upadhyaya HD, Yang SP, Shah T, Saxena KB, Michael T, McCombie WR, Yang B, Zhang G, Yang H, Wang J, Spillane C, Cook DR, May GD, Xu X, Jackson SA. PMID: 22057054.
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PubMed Mentions:
286 Fields:
Translation:
AnimalsCells
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Global profiling of rice and poplar transcriptomes highlights key conserved circadian-controlled pathways and cis-regulatory modules. PLoS One. 2011; 6(6):e16907.
Filichkin SA, Breton G, Priest HD, Dharmawardhana P, Jaiswal P, Fox SE, Michael TP, Chory J, Kay SA, Mockler TC. PMID: 21694767; PMCID: PMC3111414.
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PubMed Mentions:
88 Fields:
Translation:
AnimalsCells
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Isolation and analysis of high quality nuclear DNA with reduced organellar DNA for plant genome sequencing and resequencing. BMC Biotechnol. 2011 May 20; 11:54.
Lutz KA, Wang W, Zdepski A, Michael TP. PMID: 21599914; PMCID: PMC3131251.
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PubMed Mentions:
45 Fields:
Translation:
AnimalsCells
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The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science. 2011 May 20; 332(6032):960-3.
Banks JA, Nishiyama T, Hasebe M, Bowman JL, Gribskov M, dePamphilis C, Albert VA, Aono N, Aoyama T, Ambrose BA, Ashton NW, Axtell MJ, Barker E, Barker MS, Bennetzen JL, Bonawitz ND, Chapple C, Cheng C, Correa LG, Dacre M, DeBarry J, Dreyer I, Elias M, Engstrom EM, Estelle M, Feng L, Finet C, Floyd SK, Frommer WB, Fujita T, Gramzow L, Gutensohn M, Harholt J, Hattori M, Heyl A, Hirai T, Hiwatashi Y, Ishikawa M, Iwata M, Karol KG, Koehler B, Kolukisaoglu U, Kubo M, Kurata T, Lalonde S, Li K, Li Y, Litt A, Lyons E, Manning G, Maruyama T, Michael TP, Mikami K, Miyazaki S, Morinaga S, Murata T, Mueller-Roeber B, Nelson DR, Obara M, Oguri Y, Olmstead RG, Onodera N, Petersen BL, Pils B, Prigge M, Rensing SA, Riaño-Pachón DM, Roberts AW, Sato Y, Scheller HV, Schulz B, Schulz C, Shakirov EV, Shibagaki N, Shinohara N, Shippen DE, Sørensen I, Sotooka R, Sugimoto N, Sugita M, Sumikawa N, Tanurdzic M, Theissen G, Ulvskov P, Wakazuki S, Weng JK, Willats WW, Wipf D, Wolf PG, Yang L, Zimmer AD, Zhu Q, Mitros T, Hellsten U, Loqué D, Otillar R, Salamov A, Schmutz J, Shapiro H, Lindquist E, Lucas S, Rokhsar D, Grigoriev IV. PMID: 21551031; PMCID: PMC3166216.
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PubMed Mentions:
347 Fields:
Translation:
AnimalsCells
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The genome of woodland strawberry (Fragaria vesca). Nat Genet. 2011 Feb; 43(2):109-16.
Shulaev V, Sargent DJ, Crowhurst RN, Mockler TC, Folkerts O, Delcher AL, Jaiswal P, Mockaitis K, Liston A, Mane SP, Burns P, Davis TM, Slovin JP, Bassil N, Hellens RP, Evans C, Harkins T, Kodira C, Desany B, Crasta OR, Jensen RV, Allan AC, Michael TP, Setubal JC, Celton JM, Rees DJ, Williams KP, Holt SH, Ruiz Rojas JJ, Chatterjee M, Liu B, Silva H, Meisel L, Adato A, Filichkin SA, Troggio M, Viola R, Ashman TL, Wang H, Dharmawardhana P, Elser J, Raja R, Priest HD, Bryant DW, Fox SE, Givan SA, Wilhelm LJ, Naithani S, Christoffels A, Salama DY, Carter J, Lopez Girona E, Zdepski A, Wang W, Kerstetter RA, Schwab W, Korban SS, Davik J, Monfort A, Denoyes-Rothan B, Arus P, Mittler R, Flinn B, Aharoni A, Bennetzen JL, Salzberg SL, Dickerman AW, Velasco R, Borodovsky M, Veilleux RE, Folta KM. PMID: 21186353; PMCID: PMC3326587.
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PubMed Mentions:
511 Fields:
Translation:
AnimalsCells
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Type II protein arginine methyltransferase 5 (PRMT5) is required for circadian period determination in Arabidopsis thaliana. Proc Natl Acad Sci U S A. 2010 Dec 07; 107(49):21211-6.
Hong S, Song HR, Lutz K, Kerstetter RA, Michael TP, McClung CR. PMID: 21097700; PMCID: PMC3000274.
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PubMed Mentions:
73 Fields:
Translation:
Animals
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SOPRA: Scaffolding algorithm for paired reads via statistical optimization. BMC Bioinformatics. 2010 Jun 24; 11:345.
Dayarian A, Michael TP, Sengupta AM. PMID: 20576136; PMCID: PMC2909219.
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PubMed Mentions:
54 Fields:
Translation:
Cells
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Genome-wide association study of 107 phenotypes in Arabidopsis thaliana inbred lines. Nature. 2010 Jun 03; 465(7298):627-31.
Atwell S, Huang YS, Vilhjálmsson BJ, Willems G, Horton M, Li Y, Meng D, Platt A, Tarone AM, Hu TT, Jiang R, Muliyati NW, Zhang X, Amer MA, Baxter I, Brachi B, Chory J, Dean C, Debieu M, de Meaux J, Ecker JR, Faure N, Kniskern JM, Jones JD, Michael T, Nemri A, Roux F, Salt DE, Tang C, Todesco M, Traw MB, Weigel D, Marjoram P, Borevitz JO, Bergelson J, Nordborg M. PMID: 20336072; PMCID: PMC3023908.
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PubMed Mentions:
780 Fields:
Translation:
Animals
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Filtering error from SOLiD Output. Bioinformatics. 2010 Mar 15; 26(6):849-50.
Sasson A, Michael TP. PMID: 20207696.
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PubMed Mentions:
20 Fields:
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An SSR-based genetic linkage map of the model grass Brachypodium distachyon. Genome. 2010 Jan; 53(1):1-13.
Garvin DF, McKenzie N, Vogel JP, Mockler TC, Blankenheim ZJ, Wright J, Cheema JJ, Dicks J, Huo N, Hayden DM, Gu Y, Tobias C, Chang JH, Chu A, Trick M, Michael TP, Bevan MW, Snape JW. PMID: 20130744.
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PubMed Mentions:
22 Fields:
Translation:
AnimalsCells
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The carnivorous bladderwort (Utricularia, Lentibulariaceae): a system inflates. J Exp Bot. 2010; 61(1):5-9.
Albert VA, Jobson RW, Michael TP, Taylor DJ. PMID: 20007200.
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PubMed Mentions:
26 Fields:
Translation:
AnimalsCells
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Cis-regulatory changes at FLOWERING LOCUS T mediate natural variation in flowering responses of Arabidopsis thaliana. Genetics. 2009 Oct; 183(2):723-32, 1SI-7SI.
Schwartz C, Balasubramanian S, Warthmann N, Michael TP, Lempe J, Sureshkumar S, Kobayashi Y, Maloof JN, Borevitz JO, Chory J, Weigel D. PMID: 19652183; PMCID: PMC2766330.
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PubMed Mentions:
59 Fields:
Translation:
AnimalsCells
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Cytochrome P450 monooxygenases as reporters for circadian-regulated pathways. Plant Physiol. 2009 Jun; 150(2):858-78.
Pan Y, Michael TP, Hudson ME, Kay SA, Chory J, Schuler MA. PMID: 19386812; PMCID: PMC2689971.
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PubMed Mentions:
30 Fields:
Translation:
AnimalsCells
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Conserved Daily Transcriptional Programs in Carica papaya. Trop Plant Biol. 2008 Dec; 1(3-4):236-245.
Zdepski A, Wang W, Priest HD, Ali F, Alam M, Mockler TC, Michael TP. PMID: 20671772; PMCID: PMC2890329.
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PubMed Mentions:
15
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A zinc knuckle protein that negatively controls morning-specific growth in Arabidopsis thaliana. Proc Natl Acad Sci U S A. 2008 Nov 04; 105(44):17193-8.
Loudet O, Michael TP, Burger BT, Le Metté C, Mockler TC, Weigel D, Chory J. PMID: 18971337; PMCID: PMC2579400.
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PubMed Mentions:
43 Fields:
Translation:
AnimalsCells
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A morning-specific phytohormone gene expression program underlying rhythmic plant growth. PLoS Biol. 2008 Sep 16; 6(9):e225.
Michael TP, Breton G, Hazen SP, Priest H, Mockler TC, Kay SA, Chory J. PMID: 18798691; PMCID: PMC2535664.
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PubMed Mentions:
111 Fields:
Translation:
AnimalsCells
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The draft genome of the transgenic tropical fruit tree papaya (Carica papaya Linnaeus). Nature. 2008 Apr 24; 452(7190):991-6.
Ming R, Hou S, Feng Y, Yu Q, Dionne-Laporte A, Saw JH, Senin P, Wang W, Ly BV, Lewis KL, Salzberg SL, Feng L, Jones MR, Skelton RL, Murray JE, Chen C, Qian W, Shen J, Du P, Eustice M, Tong E, Tang H, Lyons E, Paull RE, Michael TP, Wall K, Rice DW, Albert H, Wang ML, Zhu YJ, Schatz M, Nagarajan N, Acob RA, Guan P, Blas A, Wai CM, Ackerman CM, Ren Y, Liu C, Wang J, Wang J, Na JK, Shakirov EV, Haas B, Thimmapuram J, Nelson D, Wang X, Bowers JE, Gschwend AR, Delcher AL, Singh R, Suzuki JY, Tripathi S, Neupane K, Wei H, Irikura B, Paidi M, Jiang N, Zhang W, Presting G, Windsor A, Navajas-Pérez R, Torres MJ, Feltus FA, Porter B, Li Y, Burroughs AM, Luo MC, Liu L, Christopher DA, Mount SM, Moore PH, Sugimura T, Jiang J, Schuler MA, Friedman V, Mitchell-Olds T, Shippen DE, dePamphilis CW, Palmer JD, Freeling M, Paterson AH, Gonsalves D, Wang L, Alam M. PMID: 18432245; PMCID: PMC2836516.
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PubMed Mentions:
387 Fields:
Translation:
Animals
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Network discovery pipeline elucidates conserved time-of-day-specific cis-regulatory modules. PLoS Genet. 2008 Feb; 4(2):e14.
Michael TP, Mockler TC, Breton G, McEntee C, Byer A, Trout JD, Hazen SP, Shen R, Priest HD, Sullivan CM, Givan SA, Yanovsky M, Hong F, Kay SA, Chory J. PMID: 18248097; PMCID: PMC2222925.
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PubMed Mentions:
247 Fields:
Translation:
Animals
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Simple sequence repeats provide a substrate for phenotypic variation in the Neurospora crassa circadian clock. PLoS One. 2007 Aug 29; 2(8):e795.
Michael TP, Park S, Kim TS, Booth J, Byer A, Sun Q, Chory J, Lee K. PMID: 17726525; PMCID: PMC1949147.
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PubMed Mentions:
35 Fields:
Translation:
AnimalsCells
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Genome-wide patterns of single-feature polymorphism in Arabidopsis thaliana. Proc Natl Acad Sci U S A. 2007 Jul 17; 104(29):12057-62.
Borevitz JO, Hazen SP, Michael TP, Morris GP, Baxter IR, Hu TT, Chen H, Werner JD, Nordborg M, Salt DE, Kay SA, Chory J, Weigel D, Jones JD, Ecker JR. PMID: 17626786; PMCID: PMC1914337.
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PubMed Mentions:
83 Fields:
Translation:
AnimalsCells
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The DIURNAL project: DIURNAL and circadian expression profiling, model-based pattern matching, and promoter analysis. Cold Spring Harb Symp Quant Biol. 2007; 72:353-63.
Mockler TC, Michael TP, Priest HD, Shen R, Sullivan CM, Givan SA, McEntee C, Kay SA, Chory J. PMID: 18419293.
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PubMed Mentions:
202 Fields:
Translation:
AnimalsCells
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The PHYTOCHROME C photoreceptor gene mediates natural variation in flowering and growth responses of Arabidopsis thaliana. Nat Genet. 2006 Jun; 38(6):711-5.
Balasubramanian S, Sureshkumar S, Agrawal M, Michael TP, Wessinger C, Maloof JN, Clark R, Warthmann N, Chory J, Weigel D. PMID: 16732287; PMCID: PMC1592229.
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PubMed Mentions:
103 Fields:
Translation:
Animals
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Regulation of flowering time in Arabidopsis by K homology domain proteins. Proc Natl Acad Sci U S A. 2004 Aug 24; 101(34):12759-64.
Mockler TC, Yu X, Shalitin D, Parikh D, Michael TP, Liou J, Huang J, Smith Z, Alonso JM, Ecker JR, Chory J, Lin C. PMID: 15310842; PMCID: PMC515126.
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PubMed Mentions:
82 Fields:
Translation:
Animals
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Enhanced fitness conferred by naturally occurring variation in the circadian clock. Science. 2003 Nov 07; 302(5647):1049-53.
Michael TP, Salomé PA, Yu HJ, Spencer TR, Sharp EL, McPeek MA, Alonso JM, Ecker JR, McClung CR. PMID: 14605371.
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PubMed Mentions:
186 Fields:
Translation:
Animals
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Enhancer trapping reveals widespread circadian clock transcriptional control in Arabidopsis. Plant Physiol. 2003 Jun; 132(2):629-39.
Michael TP, McClung CR. PMID: 12805593; PMCID: PMC167003.
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PubMed Mentions:
74 Fields:
Translation:
AnimalsCells
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Two Arabidopsis circadian oscillators can be distinguished by differential temperature sensitivity. Proc Natl Acad Sci U S A. 2003 May 27; 100(11):6878-83.
Michael TP, Salome PA, McClung CR. PMID: 12736379; PMCID: PMC164540.
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PubMed Mentions:
69 Fields:
Translation:
Animals
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Phase-specific circadian clock regulatory elements in Arabidopsis. Plant Physiol. 2002 Oct; 130(2):627-38.
Michael TP, McClung CR. PMID: 12376630; PMCID: PMC166592.
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PubMed Mentions:
62 Fields:
Translation:
AnimalsCells
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The out of phase 1 mutant defines a role for PHYB in circadian phase control in Arabidopsis. Plant Physiol. 2002 Aug; 129(4):1674-85.
Salomé PA, Michael TP, Kearns EV, Fett-Neto AG, Sharrock RA, McClung CR. PMID: 12177480; PMCID: PMC166755.
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PubMed Mentions:
41 Fields:
Translation:
AnimalsCells
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The Arabidopsis circadian system. Arabidopsis Book. 2002; 1:e0044.
McClung CR, Salomé PA, Michael TP. PMID: 22303209; PMCID: PMC3243369.
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PubMed Mentions:
12
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Efficacy and tolerability of tolterodine in children with detrusor hyperreflexia. Urology. 2000 Mar; 55(3):414-8.
Goessl C, Sauter T, Michael T, Bergé B, Staehler M, Miller K. PMID: 10699623.
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PubMed Mentions:
11 Fields:
Translation:
HumansCTClinical Trials
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The plant oncogenes rolA, B, and C from Agrobacterium rhizogenes. Effects on morphology, development, and hormone metabolism. Methods Mol Biol. 1995; 44:207-22.
Michael T, Spena A. PMID: 7581667.
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PubMed Mentions:
4 Fields:
Translation:
AnimalsCells