Nathan Zemke

Title(s)	, Cellular and Molecular Medicine
School	Vc-health Sciences-schools
Address	9500 Gilman Drive # La Jolla CA 92093
vCard	Download vCard

Bibliographic

Publications

Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.

Altmetrics Details

PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.

A fast, scalable and versatile tool for analysis of single-cell omics data. Nat Methods. 2024 Feb; 21(2):217-227. Zhang K, Zemke NR, Armand EJ, Ren B. PMID: 38191932; PMCID: PMC10864184.

View in: PubMed Mentions: 1 Fields:
Cli Clinical Laboratory Techniques
Translation:Cells
Author Correction: Conserved and divergent gene regulatory programs of the mammalian neocortex. Nature. 2024 Jan; 625(7996):E26. Zemke NR, Armand EJ, Wang W, Lee S, Zhou J, Li YE, Liu H, Tian W, Nery JR, Castanon RG, Bartlett A, Osteen JK, Li D, Zhuo X, Xu V, Chang L, Dong K, Indralingam HS, Rink JA, Xie Y, Miller M, Krienen FM, Zhang Q, Taskin N, Ting J, Feng G, McCarroll SA, Callaway EM, Wang T, Lein ES, Behrens MM, Ecker JR, Ren B. PMID: 38200319; PMCID: PMC10808050.

View in: PubMed Mentions: 1 Fields:
Sci Science
Conserved and divergent gene regulatory programs of the mammalian neocortex. Nature. 2023 Dec; 624(7991):390-402. Zemke NR, Armand EJ, Wang W, Lee S, Zhou J, Li YE, Liu H, Tian W, Nery JR, Castanon RG, Bartlett A, Osteen JK, Li D, Zhuo X, Xu V, Chang L, Dong K, Indralingam HS, Rink JA, Xie Y, Miller M, Krienen FM, Zhang Q, Taskin N, Ting J, Feng G, McCarroll SA, Callaway EM, Wang T, Lein ES, Behrens MM, Ecker JR, Ren B. PMID: 38092918; PMCID: PMC10719095.

View in: PubMed Mentions: Fields:
Sci Science
Translation:Humans Animals Cells
Cell-type-specific 3D-genome organization and transcription regulation in the brain. bioRxiv. 2023 Dec 05. Liu S, Zheng P, Wang CY, Jia BB, Zemke NR, Ren B, Zhuang X. PMID: 38105994; PMCID: PMC10723369.

View in: PubMed Mentions:
Adenovirus E1A binding to DCAF10 targets proteasomal degradation of RUVBL1/2 AAA+ ATPases required for quaternary assembly of multiprotein machines, innate immunity, and responses to metabolic stress. J Virol. 2023 Dec 21; 97(12):e0099323. Zemke NR, Hsu E, Barshop WD, Sha J, Wohlschlegel JA, Berk AJ. PMID: 37962355; PMCID: PMC10734532.

View in: PubMed Mentions: Fields:
Vir Virology
Translation:Humans Cells
A comparative atlas of single-cell chromatin accessibility in the human brain. Science. 2023 10 13; 382(6667):eadf7044. Li YE, Preissl S, Miller M, Johnson ND, Wang Z, Jiao H, Zhu C, Wang Z, Xie Y, Poirion O, Kern C, Pinto-Duarte A, Tian W, Siletti K, Emerson N, Osteen J, Lucero J, Lin L, Yang Q, Zhu Q, Zemke N, Espinoza S, Yanny AM, Nyhus J, Dee N, Casper T, Shapovalova N, Hirschstein D, Hodge RD, Linnarsson S, Bakken T, Levi B, Keene CD, Shang J, Lein E, Wang A, Behrens MM, Ecker JR, Ren B. PMID: 37824643; PMCID: PMC10852054.

View in: PubMed Mentions: 6 Fields:
Sci Science
Translation:Humans Animals Cells
SnapATAC2: a fast, scalable and versatile tool for analysis of single-cell omics data. bioRxiv. 2023 Sep 15. Zhang K, Zemke NR, Armand EJ, Ren B. PMID: 37745443; PMCID: PMC10515871.

View in: PubMed Mentions:
Comparative single cell epigenomic analysis of gene regulatory programs in the rodent and primate neocortex. bioRxiv. 2023 Apr 08. Zemke NR, Armand EJ, Wang W, Lee S, Zhou J, Li YE, Liu H, Tian W, Nery JR, Castanon RG, Bartlett A, Osteen JK, Li D, Zhuo X, Xu V, Miller M, Krienen FM, Zhang Q, Taskin N, Ting J, Feng G, McCarroll SA, Callaway EM, Wang T, Behrens MM, Lein ES, Ecker JR, Ren B. PMID: 37066152; PMCID: PMC10104177.

View in: PubMed Mentions:
Promoter-specific changes in initiation, elongation, and homeostasis of histone H3 acetylation during CBP/p300 inhibition. Elife. 2021 03 11; 10. Hsu E, Zemke NR, Berk AJ. PMID: 33704060; PMCID: PMC8009678.

View in: PubMed Mentions: 14 Fields:
Bio Biology
Translation:Humans Cells
The dopamine receptor antagonist trifluoperazine prevents phenotype conversion and improves survival in mouse models of glioblastoma. Proc Natl Acad Sci U S A. 2020 05 19; 117(20):11085-11096. Bhat K, Saki M, Vlashi E, Cheng F, Duhachek-Muggy S, Alli C, Yu G, Medina P, He L, Damoiseaux R, Pellegrini M, Zemke NR, Nghiemphu PL, Cloughesy TF, Liau LM, Kornblum HI, Pajonk F. PMID: 32358191; PMCID: PMC7245100.

View in: PubMed Mentions: 17 Fields:
Sci Science
Translation:Animals
Dedifferentiation by adenovirus E1A due to inactivation of Hippo pathway effectors YAP and TAZ. Genes Dev. 2019 07 01; 33(13-14):828-843. Zemke NR, Gou D, Berk AJ. PMID: 31171701; PMCID: PMC6601516.

View in: PubMed Mentions: 16 Fields:
Mol Molecular Biology
Translation:Humans Animals Cells
Transcriptomic and ChIP-sequence interrogation of EGFR signaling in HER2+ breast cancer cells reveals a dynamic chromatin landscape and S100 genes as targets. BMC Med Genomics. 2019 02 08; 12(1):32. Nava M, Dutta P, Zemke NR, Farias-Eisner R, Vadgama JV, Wu Y. PMID: 30736768; PMCID: PMC6368760.

View in: PubMed Mentions: 4 Fields:
Gen Genetics
Translation:Humans Cells
Adenovirus E1A Activation Domain Regulates H3 Acetylation Affecting Varied Steps in Transcription at Different Viral Promoters. J Virol. 2018 09 15; 92(18). Hsu E, Pennella MA, Zemke NR, Eng C, Berk AJ. PMID: 29976669; PMCID: PMC6146688.

View in: PubMed Mentions: 10 Fields:
Vir Virology
Translation:Humans Cells
The Adenovirus E1A C Terminus Suppresses a Delayed Antiviral Response and Modulates RAS Signaling. Cell Host Microbe. 2017 Dec 13; 22(6):789-800.e5. Zemke NR, Berk AJ. PMID: 29241042; PMCID: PMC5736016.

View in: PubMed Mentions: 17 Fields:
Mic Microbiology
Translation:Humans Cells
Adenovirus small E1A employs the lysine acetylases p300/CBP and tumor suppressor Rb to repress select host genes and promote productive virus infection. Cell Host Microbe. 2014 Nov 12; 16(5):663-76. Ferrari R, Gou D, Jawdekar G, Johnson SA, Nava M, Su T, Yousef AF, Zemke NR, Pellegrini M, Kurdistani SK, Berk AJ. PMID: 25525796; PMCID: PMC4418520.

View in: PubMed Mentions: 64 Fields:
Mic Microbiology
Translation:Humans Cells
Caveolin isoform switching as a molecular, structural, and metabolic regulator of microglia. Mol Cell Neurosci. 2013 Sep; 56:283-97. Niesman IR, Zemke N, Fridolfsson HN, Haushalter KJ, Levy K, Grove A, Schnoor R, Finley JC, Patel PM, Roth DM, Head BP, Patel HH. PMID: 23851187; PMCID: PMC3791173.

View in: PubMed Mentions: 17 Fields:
Cel Cell Biology Mol Molecular Biology Neu Neurology
Translation:Animals Cells