Kimberly Cooper

Title(s)Professor, Cell and Developmental Biology
SchoolVc-academic Affairs
Address9500 Gilman Drive #
La Jolla CA 92093
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    Collapse Research 
    Collapse Research Activities and Funding
    Engineering and validation of two conditional multi-gene mouse models of skeletal development
    NIH R21AR077799Jul 13, 2020 - Jun 30, 2022
    Role: Principal Investigator
    Leveraging comparative genomics to elucidate the genetic determinants of limb skeletal proportion
    NIH R01AR075415Apr 1, 2019 - Mar 31, 2024
    Role: Principal Investigator
    An exploration of the mechanisms of naturally occurring limb muscle loss during neonatal development
    NIH R21AR074609Mar 1, 2019 - Dec 31, 2021
    Role: Principal Investigator
    Development of CRISPR-Cas9 gene drive technology in mice with potential for broad utility and applied genetics
    NIH R21GM129448Sep 19, 2018 - Aug 31, 2021
    Role: Principal Investigator
    MicroRNA Function in the Developing Vertebrate Limb
    NIH F32HD052349May 1, 2006 - Apr 30, 2009
    Role: Principal Investigator

    Collapse Bibliographic 
    Collapse Publications
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. The case against simplistic genetic explanations of evolution. Development. 2024 Oct 15; 151(20). Cooper KL. PMID: 39369308; PMCID: PMC11463953.
      View in: PubMed   Mentions:    Fields:    Translation:HumansAnimals
    2. Management of Asymptomatic Bacteriuria in Non-Catheterized Adults. Urol Clin North Am. 2024 Nov; 51(4):561-570. Grant A, Cohen Z, Cooper KL. PMID: 39349023.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    3. Gene expression differences associated with intrinsic hindfoot muscle loss in the jerboa, Jaculus jaculus. J Exp Zool B Mol Dev Evol. 2024 Jul 01. Tran MP, Ochoa Reyes D, Weitzel AJ, Saxena A, Hiller M, Cooper KL. PMID: 38946691.
      View in: PubMed   Mentions:    Fields:    Translation:Animals
    4. Jointed tails enhance control of three-dimensional body rotation. ArXiv. 2024 Jun 14. Fu X, Zhang B, Weber CJ, Cooper KL, Vasudevan R, Moore TY. PMID: 38947937; PMCID: PMC11213154.
      View in: PubMed   Mentions:
    5. Metatarsal fusion resisted bending as jerboas (Dipodidae) transitioned from quadrupedal to bipedal. Proc Biol Sci. 2022 10 12; 289(1984):20221322. Villacís Núñez CN, Ray AP, Cooper KL, Moore TY. PMID: 36196542; PMCID: PMC9532996.
      View in: PubMed   Mentions: 2     Fields:    Translation:Animals
    6. Applications of and considerations for using CRISPR-Cas9-mediated gene conversion systems in rodents. Nat Protoc. 2022 01; 17(1):3-14. Grunwald HA, Weitzel AJ, Cooper KL. PMID: 34949863.
      View in: PubMed   Mentions: 2     Fields:    Translation:Animals
    7. Meiotic Cas9 expression mediates gene conversion in the male and female mouse germline. PLoS Biol. 2021 Dec; 19(12):e3001478. Weitzel AJ, Grunwald HA, Weber C, Levina R, Gantz VM, Hedrick SM, Bier E, Cooper KL. PMID: 34941868; PMCID: PMC8699911.
      View in: PubMed   Mentions: 18     Fields:    Translation:AnimalsCells
    8. Interspecies transcriptomics identify genes that underlie disproportionate foot growth in jerboas. Curr Biol. 2022 01 24; 32(2):289-303.e6. Saxena A, Sharma V, Muthuirulan P, Neufeld SJ, Tran MP, Gutierrez HL, Chen KD, Erberich JM, Birmingham A, Capellini TD, Cobb J, Hiller M, Cooper KL. PMID: 34793695; PMCID: PMC8792248.
      View in: PubMed   Mentions: 3     Fields:    Translation:AnimalsCells
    9. In the Spotlight-Early Career Researcher. J Exp Zool B Mol Dev Evol. 2021 07; 336(5):391-392. Cooper KL. PMID: 33689207.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    10. Diversification of the vertebrate limb: sequencing the events. Curr Opin Genet Dev. 2021 08; 69:42-47. Saxena A, Cooper KL. PMID: 33647833; PMCID: PMC8364862.
      View in: PubMed   Mentions: 1     Fields:    Translation:Animals
    11. A developmental perspective of homology and evolutionary novelty. Curr Top Dev Biol. 2021; 141:1-38. McKenna KZ, Wagner GP, Cooper KL. PMID: 33602485.
      View in: PubMed   Mentions: 8     Fields:    Translation:Animals
    12. Core commitments for field trials of gene drive organisms. Science. 2020 12 18; 370(6523):1417-1419. Long KC, Alphey L, Annas GJ, Bloss CS, Campbell KJ, Champer J, Chen CH, Choudhary A, Church GM, Collins JP, Cooper KL, Delborne JA, Edwards OR, Emerson CI, Esvelt K, Evans SW, Friedman RM, Gantz VM, Gould F, Hartley S, Heitman E, Hemingway J, Kanuka H, Kuzma J, Lavery JV, Lee Y, Lorenzen M, Lunshof JE, Marshall JM, Messer PW, Montell C, Oye KA, Palmer MJ, Papathanos PA, Paradkar PN, Piaggio AJ, Rasgon JL, Rašic G, Rudenko L, Saah JR, Scott MJ, Sutton JT, Vorsino AE, Akbari OS. PMID: 33335055.
      View in: PubMed   Mentions: 32     Fields:    Translation:Animals
    13. Haematopoietic stem cell-dependent Notch transcription is mediated by p53 through the Histone chaperone Supt16h. Nat Cell Biol. 2020 12; 22(12):1411-1422. Espanola SG, Song H, Ryu E, Saxena A, Kim ES, Manegold JE, Nasamran CA, Sahoo D, Oh CK, Bickers C, Shin U, Grainger S, Park YH, Pandolfo L, Kang MS, Kang S, Myung K, Cooper KL, Yelon D, Traver D, Lee Y. PMID: 33230303; PMCID: PMC8092813.
      View in: PubMed   Mentions: 6     Fields:    Translation:AnimalsCells
    14. Secondary ossification center induces and protects growth plate structure. Elife. 2020 10 16; 9. Xie M, Gol'din P, Herdina AN, Estefa J, Medvedeva EV, Li L, Newton PT, Kotova S, Shavkuta B, Saxena A, Shumate LT, Metscher BD, Großschmidt K, Nishimori S, Akovantseva A, Usanova AP, Kurenkova AD, Kumar A, Arregui IL, Tafforeau P, Fried K, Carlström M, Simon A, Gasser C, Kronenberg HM, Bastepe M, Cooper KL, Timashev P, Sanchez S, Adameyko I, Eriksson A, Chagin AS. PMID: 33063669; PMCID: PMC7581430.
      View in: PubMed   Mentions: 23     Fields:    Translation:AnimalsCells
    15. A Urology Department's Experience at the Epicenter of the COVID-19 Pandemic. Urology. 2020 10; 144:4-8. Pak JS, Sayegh CI, Smigelski MB, McKiernan JM, Cooper KL. PMID: 32619601; PMCID: PMC7326405.
      View in: PubMed   Mentions: 4     Fields:    Translation:HumansCellsPHPublic Health
    16. Increased Time between Scheduling Date and Appointment Date Results in Increased No-Show Rates in the Academic Urology Practice. Urol Pract. 2020 Nov; 7(6):461-466. Caputo JM, Smigelski M, Sebesta EM, Li G, Rutman MP, Cooper KL. PMID: 37287168.
      View in: PubMed   Mentions:    Fields:    
    17. Management of Small, Non-obstructing Renal Stones in Adults With Recurrent Urinary Tract Infections. Rev Urol. 2020; 22(2):52-56. Golan R, Cooper KL, Shah O. PMID: 32760228; PMCID: PMC7393687.
      View in: PubMed   Mentions: 2  
    18. Author Correction: Super-Mendelian inheritance mediated by CRISPR-Cas9 in the female mouse germline. Nature. 2020 01; 577(7792):E8. Grunwald HA, Gantz VM, Poplawski G, Xu XS, Bier E, Cooper KL. PMID: 31911657.
      View in: PubMed   Mentions: 1     Fields:    
    19. Inhibition of dual-specificity tyrosine phosphorylation-regulated kinase 2 perturbs 26S proteasome-addicted neoplastic progression. Proc Natl Acad Sci U S A. 2019 12 03; 116(49):24881-24891. Banerjee S, Wei T, Wang J, Lee JJ, Gutierrez HL, Chapman O, Wiley SE, Mayfield JE, Tandon V, Juarez EF, Chavez L, Liang R, Sah RL, Costello C, Mesirov JP, de la Vega L, Cooper KL, Dixon JE, Xiao J, Lei X. PMID: 31754034; PMCID: PMC6900511.
      View in: PubMed   Mentions: 28     Fields:    Translation:HumansAnimalsCells
    20. Convergent metatarsal fusion in jerboas and chickens is mediated by similarities and differences in the patterns of osteoblast and osteoclast activities. Evol Dev. 2019 11; 21(6):320-329. Gutierrez HL, Tsutsumi R, Moore TY, Cooper KL. PMID: 31631508.
      View in: PubMed   Mentions: 1     Fields:    Translation:AnimalsCells
    21. Developmental and Evolutionary Allometry of the Mammalian Limb Skeleton. Integr Comp Biol. 2019 11 01; 59(5):1356-1368. Cooper KL. PMID: 31180500; PMCID: PMC6863755.
      View in: PubMed   Mentions: 4     Fields:    Translation:Animals
    22. Evolutionary loss of foot muscle during development with characteristics of atrophy and no evidence of cell death. Elife. 2019 10 15; 8. Tran MP, Tsutsumi R, Erberich JM, Chen KD, Flores MD, Cooper KL. PMID: 31612857; PMCID: PMC6855805.
      View in: PubMed   Mentions: 3     Fields:    Translation:AnimalsCells
    23. Reducing overprescribing of antibiotics for suspected urinary tract infections in a health sciences campus student health service. Neurourol Urodyn. 2020 01; 39(1):220-224. Sebesta EM, March A, Sayegh C, Li G, Love M, Badalato GM, Ferdschneider M, Cooper KL. PMID: 31578755.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    24. Efficacy and Safety of Flexibly Dosed Esketamine Nasal Spray Combined With a Newly Initiated Oral Antidepressant in Treatment-Resistant Depression: A Randomized Double-Blind Active-Controlled Study. Am J Psychiatry. 2019 06 01; 176(6):428-438. Popova V, Daly EJ, Trivedi M, Cooper K, Lane R, Lim P, Mazzucco C, Hough D, Thase ME, Shelton RC, Molero P, Vieta E, Bajbouj M, Manji H, Drevets WC, Singh JB. PMID: 31109201.
      View in: PubMed   Mentions: 199     Fields:    Translation:HumansCTClinical Trials
    25. Author Reply. Urology. 2019 02; 124:32. Sebesta EM, Cooper KL, Badalato GM. PMID: 30784719.
      View in: PubMed   Mentions:    Fields:    
    26. Super-Mendelian inheritance mediated by CRISPR-Cas9 in the female mouse germline. Nature. 2019 Feb; 566(7742):105-109. Grunwald HA, Gantz VM, Poplawski G, Xu XS, Bier E, Cooper KL. PMID: 30675057; PMCID: PMC6367021.
      View in: PubMed   Mentions: 104     Fields:    Translation:AnimalsCells
    27. The Prevalence of Bladder Cancer During Cystoscopy for Asymptomatic Microscopic Hematuria. Urology. 2019 Apr; 126:34-38. Gonzalez AN, Lipsky MJ, Li G, Rutman MP, Cooper KL, Weiner DM, Badalato G, Decastro GJ, Wenske S, McKiernan JM, Anderson CB. PMID: 30677457.
      View in: PubMed   Mentions: 9     Fields:    Translation:Humans
    28. Urologists use fluoroquinolones more frequently in USA states with high resistance. Int J Urol. 2019 03; 26(3):433-434. Chua KJ, Li G, Cooper KL, Hyams ES. PMID: 30556207.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    29. AUTHOR REPLY. Urology. 2018 12; 122:42. Sebesta EM, Cooper KL, Badalato GM. PMID: 30552802.
      View in: PubMed   Mentions:    Fields:    
    30. Program Director Perceptions of Usefulness of the Accreditation Council for Graduate Medical Education Milestones System for Urology Resident Evaluation. Urology. 2019 02; 124:28-32. Sebesta EM, Cooper KL, Badalato GM. PMID: 30414889.
      View in: PubMed   Mentions: 1     Fields:    
    31. Assessment of practices in screening and treating women with bacteriuria. Can J Urol. 2018 10; 25(5):9486-9496. Ditkoff EL, Theofanides M, Aisen CM, Kowalik CG, Cohn JA, Sui W, Rutman M, Adam RA, Dmochowski RR, Cooper KL. PMID: 30281006.
      View in: PubMed   Mentions: 3     Fields:    Translation:Humans
    32. The National Resident Matching Program Code of Conduct: What Is the Perceived Degree of Compliance During the Urology Match Process? Urology. 2018 12; 122:37-43. Sebesta EM, Lipsky MJ, Nunez M, Cooper KL, Badalato GM. PMID: 29935263.
      View in: PubMed   Mentions: 8     Fields:    Translation:Humans
    33. Utility of catheterized specimens in reducing overdiagnosis of urinary tract infections in women. Neurourol Urodyn. 2018 08; 37(6):1996-2001. Aisen CM, Ditkoff E, RoyChoudhury A, Corish M, Rutman MP, Chung DE, Badalato GM, Cooper KL. PMID: 29603811.
      View in: PubMed   Mentions: 1     Fields:    Translation:Humans
    34. Changing While Staying the Same: Preservation of Structural Continuity During Limb Evolution by Developmental Integration. Integr Comp Biol. 2017 12 01; 57(6):1269-1280. Tsutsumi R, Tran MP, Cooper KL. PMID: 28992070; PMCID: PMC6455032.
      View in: PubMed   Mentions: 2     Fields:    Translation:Animals
    35. Author Reply. Urology. 2017 12; 110:125-126. Lipsky MJ, Cooper KL. PMID: 29033211.
      View in: PubMed   Mentions:    Fields:    
    36. Gender Differences in the Urology Residency Match-Does It Make a Difference? Urology. 2018 01; 111:39-43. Aisen CM, Sui W, Pak JS, Pagano M, Cooper KL, Badalato GM. PMID: 28943372.
      View in: PubMed   Mentions: 6     Fields:    Translation:Humans
    37. Unpredictability of escape trajectory explains predator evasion ability and microhabitat preference of desert rodents. Nat Commun. 2017 09 05; 8(1):440. Moore TY, Cooper KL, Biewener AA, Vasudevan R. PMID: 28874728; PMCID: PMC5585173.
      View in: PubMed   Mentions: 22     Fields:    Translation:Animals
    38. Preoperative Antibiotics Before Bladder Biopsy: Are They Necessary? Urology. 2017 12; 110:121-126. Lipsky MJ, Sayegh C, Theofanides MC, Benson MC, Cooper KL. PMID: 28864339.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    39. Decoding the evolution of species. Science. 2017 06 02; 356(6341):904-905. Cooper KL. PMID: 28572349.
      View in: PubMed   Mentions: 1     Fields:    
    40. The origins, scaling and loss of tetrapod digits. Philos Trans R Soc Lond B Biol Sci. 2017 02 05; 372(1713). Saxena A, Towers M, Cooper KL. PMID: 27994123; PMCID: PMC5182414.
      View in: PubMed   Mentions: 11     Fields:    Translation:Animals
    41. Prevalence of Research Publication Misrepresentation Among Urology Residency Applicants and Its Effect on Match Success. Urology. 2017 Jan; 99:5-9. Pak JS, Pagano MJ, Cooper KL, McKiernan JM, Badalato GM. PMID: 27751726.
      View in: PubMed   Mentions: 4     Fields:    Translation:Humans
    42. Evolutionary biology: Fin to limb within our grasp. Nature. 2016 09 08; 537(7619):176-177. Saxena A, Cooper KL. PMID: 27533039.
      View in: PubMed   Mentions: 3     Fields:    
    43. Outcome Analysis of Factors Impacting the Urology Residency Match. Urol Pract. 2016 Jul; 3(4):296-301. Pagano MJ, Cooper KL, McKiernan JM, Badalato GM. PMID: 37592500.
      View in: PubMed   Mentions: 3     Fields:    
    44. Diagnostic yield of cystoscopy in the evaluation of recurrent urinary tract infection in women. Neurourol Urodyn. 2017 03; 36(3):692-696. Pagano MJ, Barbalat Y, Theofanides MC, Edokpolo L, James MB, Cooper KL. PMID: 26998700.
      View in: PubMed   Mentions: 5     Fields:    Translation:Humans
    45. Multiple phylogenetically distinct events shaped the evolution of limb skeletal morphologies associated with bipedalism in the jerboas. Curr Biol. 2015 Nov 02; 25(21):2785-2794. Moore TY, Organ CL, Edwards SV, Biewener AA, Tabin CJ, Jenkins FA, Cooper KL. PMID: 26455300; PMCID: PMC4743034.
      View in: PubMed   Mentions: 19     Fields:    Translation:Animals
    46. Preface to the special issue on evolution and morphological diversity. Dev Dyn. 2015 Oct; 244(10):1181-3. Cooper KL, Shapiro MD. PMID: 26414755.
      View in: PubMed   Mentions:    Fields:    Translation:Animals
    47. Male Urethral, Penile, and Incontinence Surgery: Is Resident Exposure Adequate? Urology. 2015 Nov; 86(5):868-72. Pak JS, Silva M, Deibert CM, Cooper KL, Badalato GM. PMID: 26284595.
      View in: PubMed   Mentions: 2     Fields:    Translation:Humans
    48. Self-organization in the limb: a Turing mechanism for digit development. Curr Opin Genet Dev. 2015 Jun; 32:92-7. Cooper KL. PMID: 25819977.
      View in: PubMed   Mentions: 7     Fields:    Translation:HumansAnimalsCells
    49. Patterning and post-patterning modes of evolutionary digit loss in mammals. Nature. 2014 Jul 03; 511(7507):41-5. Cooper KL, Sears KE, Uygur A, Maier J, Baczkowski KS, Brosnahan M, Antczak D, Skidmore JA, Tabin CJ. PMID: 24990742; PMCID: PMC4228958.
      View in: PubMed   Mentions: 64     Fields:    Translation:Animals
    50. Unique expression patterns of multiple key genes associated with the evolution of mammalian flight. Proc Biol Sci. 2014 May 22; 281(1783):20133133. Wang Z, Dai M, Wang Y, Cooper KL, Zhu T, Dong D, Zhang J, Zhang S. PMID: 24695426; PMCID: PMC3996600.
      View in: PubMed   Mentions: 16     Fields:    Translation:Animals
    51. Multiple phases of chondrocyte enlargement underlie differences in skeletal proportions. Nature. 2013 Mar 21; 495(7441):375-8. Cooper KL, Oh S, Sung Y, Dasari RR, Kirschner MW, Tabin CJ. PMID: 23485973; PMCID: PMC3606657.
      View in: PubMed   Mentions: 164     Fields:    Translation:AnimalsCells
    52. The lesser Egyptian jerboa, Jaculus jaculus: a unique rodent model for evolution and development. Cold Spring Harb Protoc. 2011 Dec 01; 2011(12):1451-6. Cooper KL. PMID: 22135653.
      View in: PubMed   Mentions: 5     Fields:    Translation:Animals
    53. Husbandry and breeding of the lesser Egyptian Jerboa, Jaculus jaculus. Cold Spring Harb Protoc. 2011 Dec 01; 2011(12):1457-61. Jordan B, Vercammen P, Cooper KL. PMID: 22135654.
      View in: PubMed   Mentions: 6     Fields:    Translation:Animals
    54. Validating the use of the Mimic dV-trainer for robotic surgery skill acquisition among urology residents. Urology. 2011 Dec; 78(6):1326-30. Korets R, Mues AC, Graversen JA, Gupta M, Benson MC, Cooper KL, Landman J, Badani KK. PMID: 22001096.
      View in: PubMed   Mentions: 28     Fields:    Translation:Humans
    55. Initiation of proximal-distal patterning in the vertebrate limb by signals and growth. Science. 2011 May 27; 332(6033):1083-6. Cooper KL, Hu JK, ten Berge D, Fernandez-Teran M, Ros MA, Tabin CJ. PMID: 21617075; PMCID: PMC3258580.
      View in: PubMed   Mentions: 60     Fields:    Translation:AnimalsCells
    56. Understanding of bat wing evolution takes flight. Genes Dev. 2008 Jan 15; 22(2):121-4. Cooper KL, Tabin CJ. PMID: 18198331; PMCID: PMC2731632.
      View in: PubMed   Mentions: 10     Fields:    Translation:Animals
    57. Female sexual dysfunction, voiding symptoms and depression: common findings in partners of men with erectile dysfunction. World J Urol. 2006 Dec; 24(6):653-6. Shabsigh R, Anastasiades A, Cooper KL, Rutman MP. PMID: 17082939.
      View in: PubMed   Mentions: 6     Fields:    Translation:Humans
    58. Zebrafish foggy/spt 5 is required for migration of facial branchiomotor neurons but not for their survival. Dev Dyn. 2005 Nov; 234(3):651-8. Cooper KL, Armstrong J, Moens CB. PMID: 16193504; PMCID: PMC2597073.
      View in: PubMed   Mentions: 11     Fields:    Translation:AnimalsCells
    59. Changing aspects in the evaluation and treatment of patients with benign prostatic hyperplasia. Med Clin North Am. 2004 Mar; 88(2):281-308. Lam JS, Cooper KL, Kaplan SA. PMID: 15049579.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    60. Impact of hydronephrosis and renal function on treatment outcome: antegrade versus retrograde endopyelotomy. Urology. 2003 Jun; 61(6):1107-11; discussion 1111-2. Lam JS, Cooper KL, Greene TD, Gupta M. PMID: 12809872.
      View in: PubMed   Mentions: 12     Fields:    Translation:Humans
    61. Autonomous and nonautonomous functions for Hox/Pbx in branchiomotor neuron development. Dev Biol. 2003 Jan 15; 253(2):200-13. Cooper KL, Leisenring WM, Moens CB. PMID: 12645925.
      View in: PubMed   Mentions: 25     Fields:    Translation:AnimalsCells
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