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Bogdan Bintu

Title(s)Assistant Professor, Cellular and Molecular Medicine
SchoolVc-health Sciences-schools
Address9500 Gilman Drive #
La Jolla CA 92093
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. FAIR sharing of Chromatin Tracing datasets using the newly developed 4DN FISH Omics Format. ArXiv. 2025 Aug 21. Navelkar R, Cosolo A, Bintu B, Cheng Y, Gardeux V, Gutnik S, Fujimori T, Hafner A, Jay A, Jia BB, Jussila AP, Llimos G, Lioutas A, Martins NMC, Moore WJ, Takei Y, Wong F, Yang K, Zhang H, Zhu Q, Bienko M, Bintu L, Cai L, Deplancke B, Nollmann M, Mango SE, Ren B, Park PJ, Sawh AN, Schroeder A, Swedlow JR, Vahedi G, Wu CT, Aufmkolk S, Boettiger AN, Farabella I, Strambio-De-Castillia C, Wang S. PMID: 40895078; PMCID: PMC12393234.
      View in: PubMed   Mentions:
    2. A spatial code governs olfactory receptor choice and aligns sensory maps in the nose and brain. bioRxiv. 2025 May 08. Brann DH, Tsukahara T, Tau C, Kalloor D, Lubash R, Thamarai Kannan L, Klimpert N, Kollo M, Escamilla-Del-Arenal M, Bintu B, Bozza T, Datta SR. PMID: 40654767; PMCID: PMC12248034.
      View in: PubMed   Mentions:
    3. Molecular and Spatial Organization of the Primary Olfactory System and its Responses to Social Odors. bioRxiv. 2025 May 02. Bintu B, Isogai Y, Zhuang X, Dulac C. PMID: 40654820; PMCID: PMC12248032.
      View in: PubMed   Mentions:
    4. Temporally distinct 3D multi-omic dynamics in the developing human brain. Nature. 2024 Nov; 635(8038):481-489. Heffel MG, Zhou J, Zhang Y, Lee DS, Hou K, Pastor-Alonso O, Abuhanna KD, Galasso J, Kern C, Tai CY, Garcia-Padilla C, Nafisi M, Zhou Y, Schmitt AD, Li T, Haeussler M, Wick B, Zhang MJ, Xie F, Ziffra RS, Mukamel EA, Eskin E, Nowakowski TJ, Dixon JR, Pasaniuc B, Ecker JR, Zhu Q, Bintu B, Paredes MF, Luo C. PMID: 39385032; PMCID: PMC11560841.
      View in: PubMed   Mentions: 11     Fields:    Translation:HumansCells
    5. Spatially clustered type I interferon responses at injury borderzones. Nature. 2024 Sep; 633(8028):174-181. Ninh VK, Calcagno DM, Yu JD, Zhang B, Taghdiri N, Sehgal R, Mesfin JM, Chen CJ, Kalhor K, Toomu A, Duran JM, Adler E, Hu J, Zhang K, Christman KL, Fu Z, Bintu B, King KR. PMID: 39198639; PMCID: PMC11374671.
      View in: PubMed   Mentions: 11     Fields:    Translation:HumansAnimalsCells
    6. A phage nucleus-associated RNA-binding protein is required for jumbo phage infection. Nucleic Acids Res. 2024 May 08; 52(8):4440-4455. Enustun E, Armbruster EG, Lee J, Zhang S, Yee BA, Malukhina K, Gu Y, Deep A, Naritomi JT, Liang Q, Aigner S, Adler BA, Cress BF, Doudna JA, Chaikeeratisak V, Cleveland DW, Ghassemian M, Bintu B, Yeo GW, Pogliano J, Corbett KD. PMID: 38554115; PMCID: PMC11077065.
      View in: PubMed   Mentions: 12     Fields:    Translation:Cells
    7. Super-resolution SRS microscopy with A-PoD. Nat Methods. 2023 03; 20(3):448-458. Jang H, Li Y, Fung AA, Bagheri P, Hoang K, Skowronska-Krawczyk D, Chen X, Wu JY, Bintu B, Shi L. PMID: 36797410; PMCID: PMC10246886.
      View in: PubMed   Mentions: 27     Fields:    
    8. CTCF mediates dosage- and sequence-context-dependent transcriptional insulation by forming local chromatin domains. Nat Genet. 2021 07; 53(7):1064-1074. Huang H, Zhu Q, Jussila A, Han Y, Bintu B, Kern C, Conte M, Zhang Y, Bianco S, Chiariello AM, Yu M, Hu R, Tastemel M, Juric I, Hu M, Nicodemi M, Zhuang X, Ren B. PMID: 34002095; PMCID: PMC8853952.
      View in: PubMed   Mentions: 111     Fields:    Translation:HumansAnimalsCells
    9. Genome-Scale Imaging of the 3D Organization and Transcriptional Activity of Chromatin. Cell. 2020 09 17; 182(6):1641-1659.e26. Su JH, Zheng P, Kinrot SS, Bintu B, Zhuang X. PMID: 32822575; PMCID: PMC7851072.
      View in: PubMed   Mentions: 280     Fields:    Translation:HumansCells
    10. Super-resolution chromatin tracing reveals domains and cooperative interactions in single cells. Science. 2018 10 26; 362(6413). Bintu B, Mateo LJ, Su JH, Sinnott-Armstrong NA, Parker M, Kinrot S, Yamaya K, Boettiger AN, Zhuang X. PMID: 30361340; PMCID: PMC6535145.
      View in: PubMed   Mentions: 466     Fields:    Translation:HumansCells
    11. Combinatorial Signal Perception in the BMP Pathway. Cell. 2017 Sep 07; 170(6):1184-1196.e24. Antebi YE, Linton JM, Klumpe H, Bintu B, Gong M, Su C, McCardell R, Elowitz MB. PMID: 28886385; PMCID: PMC5612783.
      View in: PubMed   Mentions: 133     Fields:    Translation:AnimalsCells
    12. In Situ Super-Resolution Imaging of Genomic DNA with OligoSTORM and OligoDNA-PAINT. Methods Mol Biol. 2017; 1663:231-252. Beliveau BJ, Boettiger AN, Nir G, Bintu B, Yin P, Zhuang X, Wu CT. PMID: 28924672; PMCID: PMC5919218.
      View in: PubMed   Mentions: 61     Fields:    Translation:HumansAnimals
    13. Spatial organization of chromatin domains and compartments in single chromosomes. Science. 2016 Aug 05; 353(6299):598-602. Wang S, Su JH, Beliveau BJ, Bintu B, Moffitt JR, Wu CT, Zhuang X. PMID: 27445307; PMCID: PMC4991974.
      View in: PubMed   Mentions: 343     Fields:    Translation:HumansCells
    14. Super-resolution imaging reveals distinct chromatin folding for different epigenetic states. Nature. 2016 Jan 21; 529(7586):418-22. Boettiger AN, Bintu B, Moffitt JR, Wang S, Beliveau BJ, Fudenberg G, Imakaev M, Mirny LA, Wu CT, Zhuang X. PMID: 26760202; PMCID: PMC4905822.
      View in: PubMed   Mentions: 430     Fields:    Translation:AnimalsCells
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