Jan Karlseder

Title(s)Adjunct Professor, Molecular Biology
SchoolVc-academic Affairs
Address9500 Gilman Drive #
La Jolla CA 92093
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    1. High resolution long-read telomere sequencing reveals dynamic mechanisms in aging and cancer. Nat Commun. 2024 Jun 18; 15(1):5149. Schmidt TT, Tyer C, Rughani P, Haggblom C, Jones JR, Dai X, Frazer KA, Gage FH, Juul S, Hickey S, Karlseder J. PMID: 38890299; PMCID: PMC11189484.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansCells
    2. Telomeres as hotspots for innate immunity and inflammation. DNA Repair (Amst). 2024 Jan; 133:103591. Nassour J, Przetocka S, Karlseder J. PMID: 37951043; PMCID: PMC10842095.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansCells
    3. Hyperextended telomeres promote formation of C-circle DNA in telomerase positive human cells. J Biol Chem. 2023 05; 299(5):104665. Jones CY, Williams CL, Moreno SP, Morris DK, Mondello C, Karlseder J, Bertuch AA. PMID: 37003504; PMCID: PMC10235436.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansCells
    4. TZAP overexpression induces telomere dysfunction and ALT-like activity in ATRX/DAXX-deficient cells. iScience. 2023 Apr 21; 26(4):106405. Moreno SP, Fusté JM, Kaiser M, Li JSZ, Nassour J, Haggblom C, Denchi EL, Karlseder J. PMID: 37013192; PMCID: PMC10066556.
      View in: PubMed   Mentions: 3  
    5. Telomere-to-mitochondria signalling by ZBP1 mediates replicative crisis. Nature. 2023 02; 614(7949):767-773. Nassour J, Aguiar LG, Correia A, Schmidt TT, Mainz L, Przetocka S, Haggblom C, Tadepalle N, Williams A, Shokhirev MN, Akincilar SC, Tergaonkar V, Shadel GS, Karlseder J. PMID: 36755096; PMCID: PMC9946831.
      View in: PubMed   Mentions: 26     Fields:    Translation:HumansCells
    6. Hyperextended telomeres promote C-circle formation in telomerase positive human cells. bioRxiv. 2023 Jan 27. Jones CY, Williams CL, Moreno SP, Morris DK, Mondello C, Karlseder J, Bertuch AA. PMID: 36747763; PMCID: PMC9900909.
      View in: PubMed   Mentions:
    7. Telomeres and Cancer: Resolving the Paradox. Annu Rev Cancer Biol. 2021 Mar; 5(1):59-77. Nassour J, Schmidt TT, Karlseder J. PMID: 34532611; PMCID: PMC8442540.
      View in: PubMed   Mentions: 16  
    8. A stem cell reporter based platform to identify and target drug resistant stem cells in myeloid leukemia. Nat Commun. 2020 11 26; 11(1):5998. Spinler K, Bajaj J, Ito T, Zimdahl B, Hamilton M, Ahmadi A, Koechlein CS, Lytle N, Kwon HY, Anower-E-Khuda F, Sun H, Blevins A, Weeks J, Kritzik M, Karlseder J, Ginsberg MH, Park PW, Esko JD, Reya T. PMID: 33243988; PMCID: PMC7691523.
      View in: PubMed   Mentions: 5     Fields:    Translation:HumansAnimalsCells
    9. Replication stress induces mitotic death through parallel pathways regulated by WAPL and telomere deprotection. Nat Commun. 2019 09 17; 10(1):4224. Masamsetti VP, Low RRJ, Mak KS, O'Connor A, Riffkin CD, Lamm N, Crabbe L, Karlseder J, Huang DCS, Hayashi MT, Cesare AJ. PMID: 31530811; PMCID: PMC6748914.
      View in: PubMed   Mentions: 24     Fields:    Translation:HumansCells
    10. Autophagic cell death restricts chromosomal instability during replicative crisis. Nature. 2019 01; 565(7741):659-663. Nassour J, Radford R, Correia A, Fusté JM, Schoell B, Jauch A, Shaw RJ, Karlseder J. PMID: 30675059; PMCID: PMC6557118.
      View in: PubMed   Mentions: 199     Fields:    Translation:HumansCells
    11. Regulation of DNA repair pathway choice in S and G2 phases by the NHEJ inhibitor CYREN. Nature. 2017 09 20; 549(7673):548-552. Arnoult N, Correia A, Ma J, Merlo A, Garcia-Gomez S, Maric M, Tognetti M, Benner CW, Boulton SJ, Saghatelian A, Karlseder J. PMID: 28959974; PMCID: PMC5624508.
      View in: PubMed   Mentions: 120     Fields:    Translation:HumansCells
    12. TZAP: A telomere-associated protein involved in telomere length control. Science. 2017 02 10; 355(6325):638-641. Li JS, Miralles Fusté J, Simavorian T, Bartocci C, Tsai J, Karlseder J, Lazzerini Denchi E. PMID: 28082411; PMCID: PMC5518674.
      View in: PubMed   Mentions: 81     Fields:    Translation:HumansCells
    13. A balance between elongation and trimming regulates telomere stability in stem cells. Nat Struct Mol Biol. 2017 01; 24(1):30-39. Rivera T, Haggblom C, Cosconati S, Karlseder J. PMID: 27918544; PMCID: PMC5215970.
      View in: PubMed   Mentions: 61     Fields:    Translation:HumansCells
    14. Complex interactions between the DNA-damage response and mammalian telomeres. Nat Struct Mol Biol. 2015 Nov; 22(11):859-66. Arnoult N, Karlseder J. PMID: 26581520; PMCID: PMC4739752.
      View in: PubMed   Mentions: 102     Fields:    Translation:HumansAnimalsCells
    15. Cell death during crisis is mediated by mitotic telomere deprotection. Nature. 2015 Jun 25; 522(7557):492-6. Hayashi MT, Cesare AJ, Rivera T, Karlseder J. PMID: 26108857; PMCID: PMC4481881.
      View in: PubMed   Mentions: 58     Fields:    Translation:HumansCells
    16. ALT telomeres borrow from meiosis to get moving. Cell. 2014 Sep 25; 159(1):11-12. Arnoult N, Karlseder J. PMID: 25259914; PMCID: PMC4389894.
      View in: PubMed   Mentions: 6     Fields:    Translation:HumansCells
    17. Modern genome editing meets telomeres: the many functions of TPP1. Genes Dev. 2014 Sep 01; 28(17):1857-8. Karlseder J. PMID: 25184673; PMCID: PMC4197952.
      View in: PubMed   Mentions:    Fields:    Translation:HumansCells
    18. A genomics approach identifies senescence-specific gene expression regulation. Aging Cell. 2014 Oct; 13(5):946-50. Lackner DH, Hayashi MT, Cesare AJ, Karlseder J. PMID: 24863242; PMCID: PMC4172521.
      View in: PubMed   Mentions: 33     Fields:    Translation:HumansCells
    19. Rapid induction of alternative lengthening of telomeres by depletion of the histone chaperone ASF1. Nat Struct Mol Biol. 2014 Feb; 21(2):167-74. O'Sullivan RJ, Arnoult N, Lackner DH, Oganesian L, Haggblom C, Corpet A, Almouzni G, Karlseder J. PMID: 24413054; PMCID: PMC3946341.
      View in: PubMed   Mentions: 158     Fields:    Translation:HumansCells
    20. The telomere deprotection response is functionally distinct from the genomic DNA damage response. Mol Cell. 2013 Jul 25; 51(2):141-55. Cesare AJ, Hayashi MT, Crabbe L, Karlseder J. PMID: 23850488; PMCID: PMC3721072.
      View in: PubMed   Mentions: 88     Fields:    Translation:HumansCells
    21. 5' C-rich telomeric overhangs are an outcome of rapid telomere truncation events. DNA Repair (Amst). 2013 Mar 01; 12(3):238-45. Oganesian L, Karlseder J. PMID: 23347616; PMCID: PMC3594334.
      View in: PubMed   Mentions: 20     Fields:    Translation:HumansCells
    22. DNA damage associated with mitosis and cytokinesis failure. Oncogene. 2013 Sep 26; 32(39):4593-601. Hayashi MT, Karlseder J. PMID: 23318447; PMCID: PMC3681845.
      View in: PubMed   Mentions: 70     Fields:    Translation:HumansAnimalsCells
    23. C. elegans survivors without telomerase. Worm. 2013 Jan 01; 2(1):e21073. Lackner DH, Karlseder J. PMID: 24058854; PMCID: PMC3670455.
      View in: PubMed   Mentions: 4  
    24. Human telomeres are tethered to the nuclear envelope during postmitotic nuclear assembly. Cell Rep. 2012 Dec 27; 2(6):1521-9. Crabbe L, Cesare AJ, Kasuboski JM, Fitzpatrick JA, Karlseder J. PMID: 23260663; PMCID: PMC3694759.
      View in: PubMed   Mentions: 66     Fields:    Translation:HumansAnimalsCells
    25. The great unravelling: chromatin as a modulator of the aging process. Trends Biochem Sci. 2012 Nov; 37(11):466-76. O'Sullivan RJ, Karlseder J. PMID: 22959736; PMCID: PMC3482262.
      View in: PubMed   Mentions: 52     Fields:    Translation:HumansAnimalsCells
    26. A three-state model of telomere control over human proliferative boundaries. Curr Opin Cell Biol. 2012 Dec; 24(6):731-8. Cesare AJ, Karlseder J. PMID: 22947495; PMCID: PMC3532573.
      View in: PubMed   Mentions: 52     Fields:    Translation:HumansAnimalsCells
    27. The BLM helicase contributes to telomere maintenance through processing of late-replicating intermediate structures. Nucleic Acids Res. 2012 Aug; 40(15):7358-67. Barefield C, Karlseder J. PMID: 22576367; PMCID: PMC3424559.
      View in: PubMed   Mentions: 88     Fields:    Translation:HumansCells
    28. Organismal propagation in the absence of a functional telomerase pathway in Caenorhabditis elegans. EMBO J. 2012 Apr 18; 31(8):2024-33. Lackner DH, Raices M, Maruyama H, Haggblom C, Karlseder J. PMID: 22425786; PMCID: PMC3343340.
      View in: PubMed   Mentions: 15     Fields:    Translation:AnimalsCells
    29. A telomere-dependent DNA damage checkpoint induced by prolonged mitotic arrest. Nat Struct Mol Biol. 2012 Mar 11; 19(4):387-94. Hayashi MT, Cesare AJ, Fitzpatrick JA, Lazzerini-Denchi E, Karlseder J. PMID: 22407014; PMCID: PMC3319806.
      View in: PubMed   Mentions: 111     Fields:    Translation:HumansCells
    30. A siRNA-based screen for genes involved in chromosome end protection. PLoS One. 2011; 6(6):e21407. Lackner DH, Durocher D, Karlseder J. PMID: 21760879; PMCID: PMC3121770.
      View in: PubMed   Mentions: 11     Fields:    Translation:HumansCells
    31. Mammalian 5' C-rich telomeric overhangs are a mark of recombination-dependent telomere maintenance. Mol Cell. 2011 Apr 22; 42(2):224-36. Oganesian L, Karlseder J. PMID: 21504833; PMCID: PMC3082866.
      View in: PubMed   Mentions: 56     Fields:    Translation:HumansAnimalsCells
    32. TERRA and hnRNPA1 orchestrate an RPA-to-POT1 switch on telomeric single-stranded DNA. Nature. 2011 Mar 24; 471(7339):532-6. Flynn RL, Centore RC, O'Sullivan RJ, Rai R, Tse A, Songyang Z, Chang S, Karlseder J, Zou L. PMID: 21399625; PMCID: PMC3078637.
      View in: PubMed   Mentions: 199     Fields:    Translation:HumansCells
    33. Asf1b, the necessary Asf1 isoform for proliferation, is predictive of outcome in breast cancer. EMBO J. 2011 Feb 02; 30(3):480-93. Corpet A, De Koning L, Toedling J, Savignoni A, Berger F, Lemaître C, O'Sullivan RJ, Karlseder J, Barillot E, Asselain B, Sastre-Garau X, Almouzni G. PMID: 21179005; PMCID: PMC3034011.
      View in: PubMed   Mentions: 96     Fields:    Translation:HumansCells
    34. The adenovirus E1b55K/E4orf6 complex induces degradation of the Bloom helicase during infection. J Virol. 2011 Feb; 85(4):1887-92. Orazio NI, Naeger CM, Karlseder J, Weitzman MD. PMID: 21123383; PMCID: PMC3028918.
      View in: PubMed   Mentions: 52     Fields:    Translation:HumansCells
    35. Reduced histone biosynthesis and chromatin changes arising from a damage signal at telomeres. Nat Struct Mol Biol. 2010 Oct; 17(10):1218-25. O'Sullivan RJ, Kubicek S, Schreiber SL, Karlseder J. PMID: 20890289; PMCID: PMC2951278.
      View in: PubMed   Mentions: 228     Fields:    Translation:HumansCells
    36. Mammalian Rap1 widens its impact. Nat Cell Biol. 2010 Aug; 12(8):733-5. Crabbe L, Karlseder J. PMID: 20622867.
      View in: PubMed   Mentions: 6     Fields:    Translation:HumansAnimalsCells
    37. Impact papers on aging in 2009. Aging (Albany NY). 2010 Mar; 2(3):111-21. Blagosklonny MV, Campisi J, Sinclair DA, Bartke A, Blasco MA, Bonner WM, Bohr VA, Brosh RM, Brunet A, Depinho RA, Donehower LA, Finch CE, Finkel T, Gorospe M, Gudkov AV, Hall MN, Hekimi S, Helfand SL, Karlseder J, Kenyon C, Kroemer G, Longo V, Nussenzweig A, Osiewacz HD, Peeper DS, Rando TA, Rudolph KL, Sassone-Corsi P, Serrano M, Sharpless NE, Skulachev VP, Tilly JL, Tower J, Verdin E, Vijg J. PMID: 20351400; PMCID: PMC2871240.
      View in: PubMed   Mentions: 12     Fields:    Translation:HumansAnimalsCells
    38. Telomeres: protecting chromosomes against genome instability. Nat Rev Mol Cell Biol. 2010 Mar; 11(3):171-81. O'Sullivan RJ, Karlseder J. PMID: 20125188; PMCID: PMC2842081.
      View in: PubMed   Mentions: 455     Fields:    Translation:HumansCells
    39. Chromosome end protection becomes even more complex. Nat Struct Mol Biol. 2009 Dec; 16(12):1205-6. Karlseder J. PMID: 19956204.
      View in: PubMed   Mentions: 3     Fields:    Translation:Cells
    40. Telomeric armor: the layers of end protection. J Cell Sci. 2009 Nov 15; 122(Pt 22):4013-25. Oganesian L, Karlseder J. PMID: 19910493; PMCID: PMC2776497.
      View in: PubMed   Mentions: 28     Fields:    Translation:HumansAnimalsCells
    41. Mammalian telomeres resemble fragile sites and require TRF1 for efficient replication. Cell. 2009 Jul 10; 138(1):90-103. Sfeir A, Kosiyatrakul ST, Hockemeyer D, MacRae SL, Karlseder J, Schildkraut CL, de Lange T. PMID: 19596237; PMCID: PMC2723738.
      View in: PubMed   Mentions: 580     Fields:    Translation:HumansAnimalsCells
    42. Moderate expression of TRF2 in the hematopoietic system increases development of large cell blastic T-cell lymphomas. Aging (Albany NY). 2009 Jan; 1(1):122-130. Begemann S, Galimi F, Karlseder J. PMID: 20046894; PMCID: PMC2772070.
      View in: PubMed   Mentions: 6     Fields:    Translation:AnimalsCells
    43. C. elegans telomeres contain G-strand and C-strand overhangs that are bound by distinct proteins. Cell. 2008 Mar 07; 132(5):745-57. Raices M, Verdun RE, Compton SA, Haggblom CI, Griffith JD, Dillin A, Karlseder J. PMID: 18329362.
      View in: PubMed   Mentions: 78     Fields:    Translation:HumansAnimalsCells
    44. Replication and protection of telomeres. Nature. 2007 Jun 21; 447(7147):924-31. Verdun RE, Karlseder J. PMID: 17581575.
      View in: PubMed   Mentions: 224     Fields:    Translation:HumansAnimalsCells
    45. Of wombats and whales: telomere tales in Madrid. Conference on telomeres and telomerase. EMBO Rep. 2007 Jun; 8(6):542-6. Karlseder J, Cooper JP. PMID: 17510654; PMCID: PMC2002537.
      View in: PubMed   Mentions:    Fields:    Translation:HumansAnimalsCells
    46. Telomere dysfunction as a cause of genomic instability in Werner syndrome. Proc Natl Acad Sci U S A. 2007 Feb 13; 104(7):2205-10. Crabbe L, Jauch A, Naeger CM, Holtgreve-Grez H, Karlseder J. PMID: 17284601; PMCID: PMC1794219.
      View in: PubMed   Mentions: 103     Fields:    Translation:HumansCells
    47. The DNA damage machinery and homologous recombination pathway act consecutively to protect human telomeres. Cell. 2006 Nov 17; 127(4):709-20. Verdun RE, Karlseder J. PMID: 17110331.
      View in: PubMed   Mentions: 191     Fields:    Translation:HumansCells
    48. Telomeric proteins: clearing the way for the replication fork. Nat Struct Mol Biol. 2006 May; 13(5):386-7. Karlseder J. PMID: 16738605.
      View in: PubMed   Mentions: 4     Fields:    Translation:HumansAnimalsCells
    49. Functional human telomeres are recognized as DNA damage in G2 of the cell cycle. Mol Cell. 2005 Nov 23; 20(4):551-61. Verdun RE, Crabbe L, Haggblom C, Karlseder J. PMID: 16307919.
      View in: PubMed   Mentions: 148     Fields:    Translation:HumansCells
    50. Uncoupling of longevity and telomere length in C. elegans. PLoS Genet. 2005 Sep; 1(3):e30. Raices M, Maruyama H, Dillin A, Karlseder J. PMID: 16151516; PMCID: PMC1200426.
      View in: PubMed   Mentions: 30     Fields:    Translation:AnimalsCells
    51. In the end, it's all structure. Curr Mol Med. 2005 Mar; 5(2):135-43. Crabbe L, Karlseder J. PMID: 15974866.
      View in: PubMed   Mentions: 4     Fields:    Translation:HumansAnimalsCells
    52. Defective telomere lagging strand synthesis in cells lacking WRN helicase activity. Science. 2004 Dec 10; 306(5703):1951-3. Crabbe L, Verdun RE, Haggblom CI, Karlseder J. PMID: 15591207.
      View in: PubMed   Mentions: 305     Fields:    Translation:HumansCells
    53. The telomeric protein TRF2 binds the ATM kinase and can inhibit the ATM-dependent DNA damage response. PLoS Biol. 2004 Aug; 2(8):E240. Karlseder J, Hoke K, Mirzoeva OK, Bakkenist C, Kastan MB, Petrini JH, de Lange T. PMID: 15314656; PMCID: PMC509302.
      View in: PubMed   Mentions: 160     Fields:    Translation:HumansCells
    54. Targeted deletion reveals an essential function for the telomere length regulator Trf1. Mol Cell Biol. 2003 Sep; 23(18):6533-41. Karlseder J, Kachatrian L, Takai H, Mercer K, Hingorani S, Jacks T, de Lange T. PMID: 12944479; PMCID: PMC193696.
      View in: PubMed   Mentions: 79     Fields:    Translation:AnimalsCells
    55. Telomere repeat binding factors: keeping the ends in check. Cancer Lett. 2003 May 15; 194(2):189-97. Karlseder J. PMID: 12757977.
      View in: PubMed   Mentions: 24     Fields:    Translation:HumansAnimalsCells
    56. DNA ligase IV-dependent NHEJ of deprotected mammalian telomeres in G1 and G2. Curr Biol. 2002 Oct 01; 12(19):1635-44. Smogorzewska A, Karlseder J, Holtgreve-Grez H, Jauch A, de Lange T. PMID: 12361565.
      View in: PubMed   Mentions: 168     Fields:    Translation:HumansAnimalsCells
    57. Senescence induced by altered telomere state, not telomere loss. Science. 2002 Mar 29; 295(5564):2446-9. Karlseder J, Smogorzewska A, de Lange T. PMID: 11923537.
      View in: PubMed   Mentions: 255     Fields:    Translation:HumansCells
    58. p53- and ATM-dependent apoptosis induced by telomeres lacking TRF2. Science. 1999 Feb 26; 283(5406):1321-5. Karlseder J, Broccoli D, Dai Y, Hardy S, de Lange T. PMID: 10037601.
      View in: PubMed   Mentions: 350     Fields:    Translation:HumansAnimalsCells
    59. In situ detection of protein-DNA interactions in filamentous fungi by in vivo footprinting. Nucleic Acids Res. 1998 Aug 15; 26(16):3862-4. Wolschek MF, Narendja F, Karlseder J, Kubicek CP, Scazzocchio C, Strauss J. PMID: 9685506; PMCID: PMC147760.
      View in: PubMed   Mentions: 11     Fields:    Translation:AnimalsCells
    60. alpha-Melanocyte stimulating hormone downregulates differentiation-driven heat shock protein 70 expression in keratinocytes. J Invest Dermatol. 1997 Apr; 108(4):401-5. Orel L, Simon MM, Karlseder J, Bhardwaj R, Trautinger F, Schwarz T, Luger TA. PMID: 9077466.
      View in: PubMed   Mentions: 4     Fields:    Translation:HumansCells
    61. Drug resistance against gemcitabine and topotecan mediated by constitutive hsp70 overexpression in vitro: implication of quercetin as sensitiser in chemotherapy. Br J Cancer. 1996 Jul; 74(2):172-7. Sliutz G, Karlseder J, Tempfer C, Orel L, Holzer G, Simon MM. PMID: 8688318; PMCID: PMC2074570.
      View in: PubMed   Mentions: 29     Fields:    Translation:HumansAnimalsCells
    62. Carboxy-terminal residues of mouse thymidine kinase are essential for rapid degradation in quiescent cells. J Mol Biol. 1996 Jun 14; 259(3):383-92. Sutterluety H, Bartl S, Karlseder J, Wintersberger E, Seiser C. PMID: 8676376.
      View in: PubMed   Mentions: 8     Fields:    Translation:AnimalsCells
    63. Interaction of Sp1 with the growth- and cell cycle-regulated transcription factor E2F. Mol Cell Biol. 1996 Apr; 16(4):1659-67. Karlseder J, Rotheneder H, Wintersberger E. PMID: 8657141; PMCID: PMC231152.
      View in: PubMed   Mentions: 97     Fields:    Translation:AnimalsCells
    64. HSP70 overexpression mediates the escape of a doxorubicin-induced G2 cell cycle arrest. Biochem Biophys Res Commun. 1996 Mar 07; 220(1):153-9. Karlseder J, Wissing D, Holzer G, Orel L, Sliutz G, Auer H, Jäättelä M, Simon MM. PMID: 8602836.
      View in: PubMed   Mentions: 17     Fields:    Translation:HumansAnimalsCells
    65. Patterns of DNA amplification at band q13 of chromosome 11 in human breast cancer. Genes Chromosomes Cancer. 1994 Jan; 9(1):42-8. Karlseder J, Zeillinger R, Schneeberger C, Czerwenka K, Speiser P, Kubista E, Birnbaum D, Gaudray P, Theillet C. PMID: 7507699.
      View in: PubMed   Mentions: 23     Fields:    Translation:HumansCells
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