Gerald Shadel

Title(s)Adjunct Professor, Molecular Biology
SchoolVc-academic Affairs
Address9500 Gilman Drive #
La Jolla CA 92093
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    Collapse Research 
    Collapse Research Activities and Funding
    Aging as a Risk Factor and Target for Prevention of Liver Cancer
    NIH P01AG073084Sep 15, 2021 - Aug 31, 2026
    Role: Co-Principal Investigator
    San Diego Nathan Shock Center
    NIH P30AG068635Sep 30, 2020 - May 31, 2025
    Role: Principal Investigator
    Mitochondria-to-Nucleus Signaling in Colorectal Cancer
    NIH R01CA228211Dec 1, 2019 - Nov 30, 2024
    Role: Principal Investigator
    (PQ5) Mitochondrial Heterogeneity in Melanoma Tumor and Immune Responses
    NIH R01CA216101Sep 1, 2018 - Aug 31, 2023
    Role: Principal Investigator
    Inducible Mouse Models of Mitochondrial ROS Signaling and Environmental Stress
    NIH R33ES025636Jul 1, 2017 - Jun 30, 2020
    Role: Principal Investigator
    Mitochondrial DNA Stress Activation of Interferon Signaling and Lupus Pathology
    NIH R01AR069876Mar 1, 2017 - May 31, 2022
    Role: Principal Investigator
    INDUCIBLE MOUSE MODELS OF MITOCHONDRIAL ROS SIGNALING AND ENVIRONMENTAL STRESS
    NIH R21ES025636May 1, 2015 - Jun 30, 2017
    Role: Principal Investigator
    Mitochondrial Biogenesis and Dynamics in Health, Disease and Aging
    NIH R13GM106623Jun 11, 2013 - May 31, 2014
    Role: Principal Investigator
    Mitochondrial Dysfunction and Oxidative Stress in Ataxia Telangiectasia
    NIH R01NS056206Jun 1, 2007 - May 31, 2013
    Role: Principal Investigator
    Epigenetic Regulation of Mitochondiral Complex II
    NIH R01CA112364Feb 1, 2005 - Dec 31, 2010
    Role: Principal Investigator
    Nuclear Control of Mitochondrial Gene Expression
    NIH R01AG047632Sep 30, 1997 - May 31, 2018
    Role: Principal Investigator
    Nuclear Control of Mitochondrial Gene Expression
    NIH R01HL059655Sep 30, 1997 - Jan 31, 2013
    Role: Principal Investigator

    Collapse Bibliographic 
    Collapse Publications
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. INF2-mediated actin polymerization at ER-organelle contacts regulates organelle size and movement. Res Sq. 2024 Aug 16. Schiavon CR, Wang Y, Feng JW, Garrett S, Sung TC, Dayn Y, Wang C, Youle RJ, Quintero-Carmona OA, Shadel GS, Manor U. PMID: 39184068; PMCID: PMC11343180.
      View in: PubMed   Mentions:
    2. INF2-mediated actin polymerization at ER-organelle contacts regulates organelle size and movement. bioRxiv. 2024 Jul 15. Schiavon CR, Wang Y, Feng JW, Garrett S, Sung TC, Dayn Y, Wang C, Youle RJ, Quintero-Carmona OA, Shadel GS, Manor U. PMID: 39005402; PMCID: PMC11245118.
      View in: PubMed   Mentions:
    3. Protocol for the San Diego Nathan Shock Center Clinical Cohort: a new resource for studies of human aging. BMJ Open. 2024 Jun 25; 14(6):e082659. Phang HJ, Heimler SR, Scandalis LM, Wing D, Moran R, Nichols JF, Moreno D, Shadel GS, Gage FH, Molina AJA. PMID: 38925692; PMCID: PMC11202663.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    4. ARID1A suppresses R-loop-mediated STING-type I interferon pathway activation of anti-tumor immunity. Cell. 2024 Jun 20; 187(13):3390-3408.e19. Maxwell MB, Hom-Tedla MS, Yi J, Li S, Rivera SA, Yu J, Burns MJ, McRae HM, Stevenson BT, Coakley KE, Ho J, Gastelum KB, Bell JC, Jones AC, Eskander RN, Dykhuizen EC, Shadel GS, Kaech SM, Hargreaves DC. PMID: 38754421; PMCID: PMC11193641.
      View in: PubMed   Mentions:    Fields:    Translation:HumansAnimalsCells
    5. Mitochondrial DNA replication stress triggers a pro-inflammatory endosomal pathway of nucleoid disposal. Nat Cell Biol. 2024 Feb; 26(2):194-206. Newman LE, Weiser Novak S, Rojas GR, Tadepalle N, Schiavon CR, Grotjahn DA, Towers CG, Tremblay MÈ, Donnelly MP, Ghosh S, Medina M, Rocha S, Rodriguez-Enriquez R, Chevez JA, Lemersal I, Manor U, Shadel GS. PMID: 38332353; PMCID: PMC11026068.
      View in: PubMed   Mentions: 7     Fields:    Translation:HumansCells
    6. Author Correction: Apoptotic stress causes mtDNA release during senescence and drives the SASP. Nature. 2024 Jan; 625(7995):E15. Victorelli S, Salmonowicz H, Chapman J, Martini H, Vizioli MG, Riley JS, Cloix C, Hall-Younger E, Machado Espindola-Netto J, Jurk D, Lagnado AB, Sales Gomez L, Farr JN, Saul D, Reed R, Kelly G, Eppard M, Greaves LC, Dou Z, Pirius N, Szczepanowska K, Porritt RA, Huang H, Huang TY, Mann DA, Masuda CA, Khosla S, Dai H, Kaufmann SH, Zacharioudakis E, Gavathiotis E, LeBrasseur NK, Lei X, Sainz AG, Korolchuk VI, Adams PD, Shadel GS, Tait SWG, Passos JF. PMID: 38168624; PMCID: PMC10794136.
      View in: PubMed   Mentions: 1     Fields:    
    7. Apoptotic stress causes mtDNA release during senescence and drives the SASP. Nature. 2023 Oct; 622(7983):627-636. Victorelli S, Salmonowicz H, Chapman J, Martini H, Vizioli MG, Riley JS, Cloix C, Hall-Younger E, Machado Espindola-Netto J, Jurk D, Lagnado AB, Sales Gomez L, Farr JN, Saul D, Reed R, Kelly G, Eppard M, Greaves LC, Dou Z, Pirius N, Szczepanowska K, Porritt RA, Huang H, Huang TY, Mann DA, Masuda CA, Khosla S, Dai H, Kaufmann SH, Zacharioudakis E, Gavathiotis E, LeBrasseur NK, Lei X, Sainz AG, Korolchuk VI, Adams PD, Shadel GS, Tait SWG, Passos JF. PMID: 37821702; PMCID: PMC10584674.
      View in: PubMed   Mentions: 43     Fields:    Translation:AnimalsCells
    8. Manipulating mitochondrial electron flow enhances tumor immunogenicity. Science. 2023 09 22; 381(6664):1316-1323. Mangalhara KC, Varanasi SK, Johnson MA, Burns MJ, Rojas GR, Esparza Moltó PB, Sainz AG, Tadepalle N, Abbott KL, Mendiratta G, Chen D, Farsakoglu Y, Kunchok T, Hoffmann FA, Parisi B, Rincon M, Vander Heiden MG, Bosenberg M, Hargreaves DC, Kaech SM, Shadel GS. PMID: 37733872; PMCID: PMC11034774.
      View in: PubMed   Mentions: 10     Fields:    Translation:HumansCells
    9. Activation of the cGAS-STING innate immune response in cells with deficient mitochondrial topoisomerase TOP1MT. Hum Mol Genet. 2023 07 20; 32(15):2422-2440. Al Khatib I, Deng J, Lei Y, Torres-Odio S, Rojas GR, Newman LE, Chung BK, Symes A, Zhang H, Huang SN, Pommier Y, Khan A, Shadel GS, West AP, Gibson WT, Shutt TE. PMID: 37129502; PMCID: PMC10360396.
      View in: PubMed   Mentions: 4     Fields:    Translation:Humans
    10. Cooperative sensing of mitochondrial DNA by ZBP1 and cGAS promotes cardiotoxicity. Cell. 2023 07 06; 186(14):3013-3032.e22. Lei Y, VanPortfliet JJ, Chen YF, Bryant JD, Li Y, Fails D, Torres-Odio S, Ragan KB, Deng J, Mohan A, Wang B, Brahms ON, Yates SD, Spencer M, Tong CW, Bosenberg MW, West LC, Shadel GS, Shutt TE, Upton JW, Li P, West AP. PMID: 37352855; PMCID: PMC10330843.
      View in: PubMed   Mentions: 31     Fields:    Translation:AnimalsCells
    11. Induction of lysosomal and mitochondrial biogenesis by AMPK phosphorylation of FNIP1. Science. 2023 04 21; 380(6642):eabj5559. Malik N, Ferreira BI, Hollstein PE, Curtis SD, Trefts E, Weiser Novak S, Yu J, Gilson R, Hellberg K, Fang L, Sheridan A, Hah N, Shadel GS, Manor U, Shaw RJ. PMID: 37079666; PMCID: PMC10794112.
      View in: PubMed   Mentions: 27     Fields:    Translation:HumansCells
    12. Mitochondrial DNA Release in Innate Immune Signaling. Annu Rev Biochem. 2023 06 20; 92:299-332. Newman LE, Shadel GS. PMID: 37001140; PMCID: PMC11058562.
      View in: PubMed   Mentions: 21     Fields:    Translation:HumansAnimalsCells
    13. Telomere-to-mitochondria signalling by ZBP1 mediates replicative crisis. Nature. 2023 02; 614(7949):767-773. Nassour J, Aguiar LG, Correia A, Schmidt TT, Mainz L, Przetocka S, Haggblom C, Tadepalle N, Williams A, Shokhirev MN, Akincilar SC, Tergaonkar V, Shadel GS, Karlseder J. PMID: 36755096; PMCID: PMC9946831.
      View in: PubMed   Mentions: 26     Fields:    Translation:HumansCells
    14. DNA methyltransferase 3 alpha and TET methylcytosine dioxygenase 2 restrain mitochondrial DNA-mediated interferon signaling in macrophages. Immunity. 2022 08 09; 55(8):1386-1401.e10. Cobo I, Tanaka TN, Chandra Mangalhara K, Lana A, Yeang C, Han C, Schlachetzki J, Challcombe J, Fixsen BR, Sakai M, Li RZ, Fields H, Mokry M, Tsai RG, Bejar R, Prange K, de Winther M, Shadel GS, Glass CK. PMID: 35931086; PMCID: PMC9718507.
      View in: PubMed   Mentions: 17     Fields:    Translation:HumansCells
    15. Oxidized DNA fragments exit mitochondria via mPTP- and VDAC-dependent channels to activate NLRP3 inflammasome and interferon signaling. Immunity. 2022 08 09; 55(8):1370-1385.e8. Xian H, Watari K, Sanchez-Lopez E, Offenberger J, Onyuru J, Sampath H, Ying W, Hoffman HM, Shadel GS, Karin M. PMID: 35835107; PMCID: PMC9378606.
      View in: PubMed   Mentions: 123     Fields:    Translation:AnimalsCells
    16. Absolute quantification of plasma mitochondrial DNA by droplet digital PCR marks COVID-19 severity over time during intensive care unit admissions. Am J Physiol Lung Cell Mol Physiol. 2022 07 01; 323(1):L84-L92. Hepokoski ML, Odish M, Lam MT, Coufal NG, Rolfsen ML, Shadel GS, Moyzis AG, Sainz AG, Takiar PG, Patel S, Leonard AJ, Samandari N, Hansen E, Trescott S, Nguyen C, Jepsen K, Cutter G, Gillespie MN, Spragg RG, Sasik R, Ix JH. PMID: 35699291; PMCID: PMC9273271.
      View in: PubMed   Mentions: 8     Fields:    Translation:Humans
    17. ER-lysosome lipid transfer protein VPS13C/PARK23 prevents aberrant mtDNA-dependent STING signaling. J Cell Biol. 2022 07 04; 221(7). Hancock-Cerutti W, Wu Z, Xu P, Yadavalli N, Leonzino M, Tharkeshwar AK, Ferguson SM, Shadel GS, De Camilli P. PMID: 35657605; PMCID: PMC9170524.
      View in: PubMed   Mentions: 33     Fields:    Translation:HumansCells
    18. The San Diego Nathan Shock Center: tackling the heterogeneity of aging. Geroscience. 2021 10; 43(5):2139-2148. Shadel GS, Adams PD, Berggren WT, Diedrich JK, Diffenderfer KE, Gage FH, Hah N, Hansen M, Hetzer MW, Molina AJA, Manor U, Marek K, O'Keefe DD, Pinto AFM, Sacco A, Sharpee TO, Shokriev MN, Zambetti S. PMID: 34370163; PMCID: PMC8599742.
      View in: PubMed   Mentions: 3     Fields:    Translation:Humans
    19. Mitochondrial DNA: cellular genotoxic stress sentinel. Trends Biochem Sci. 2021 10; 46(10):812-821. Wu Z, Sainz AG, Shadel GS. PMID: 34088564; PMCID: PMC9809014.
      View in: PubMed   Mentions: 38     Fields:    Translation:Cells
    20. RNA reports breaking news from mitochondria. Mol Cell. 2021 05 06; 81(9):1863-1865. Tadepalle N, Shadel GS. PMID: 33961775.
      View in: PubMed   Mentions: 2     Fields:    Translation:Cells
    21. SARS-CoV-2 Spike Protein Impairs Endothelial Function via Downregulation of ACE 2. Circ Res. 2021 04 30; 128(9):1323-1326. Lei Y, Zhang J, Schiavon CR, He M, Chen L, Shen H, Zhang Y, Yin Q, Cho Y, Andrade L, Shadel GS, Hepokoski M, Lei T, Wang H, Zhang J, Yuan JX, Malhotra A, Manor U, Wang S, Yuan ZY, Shyy JY. PMID: 33784827; PMCID: PMC8091897.
      View in: PubMed   Mentions: 221     Fields:    Translation:AnimalsCells
    22. Insights into epithelial cell senescence from transcriptome and secretome analysis of human oral keratinocytes. Aging (Albany NY). 2021 02 12; 13(4):4747-4777. Schwartz RE, Shokhirev MN, Andrade LR, Gutkind JS, Iglesias-Bartolome R, Shadel GS. PMID: 33601339; PMCID: PMC7950289.
      View in: PubMed   Mentions: 8     Fields:    Translation:HumansCells
    23. Impaired Mitochondrial Mobility in Charcot-Marie-Tooth Disease. Front Cell Dev Biol. 2021; 9:624823. Schiavon CR, Shadel GS, Manor U. PMID: 33598463; PMCID: PMC7882694.
      View in: PubMed   Mentions: 18  
    24. Actin chromobody imaging reveals sub-organellar actin dynamics. Nat Methods. 2020 09; 17(9):917-921. Schiavon CR, Zhang T, Zhao B, Moore AS, Wales P, Andrade LR, Wu M, Sung TC, Dayn Y, Feng JW, Quintero OA, Shadel GS, Grosse R, Manor U. PMID: 32778832; PMCID: PMC7746311.
      View in: PubMed   Mentions: 21     Fields:    Translation:HumansCells
    25. Paradoxical aortic stiffening and subsequent cardiac dysfunction in Hutchinson-Gilford progeria syndrome. J R Soc Interface. 2020 05; 17(166):20200066. Murtada SI, Kawamura Y, Caulk AW, Ahmadzadeh H, Mikush N, Zimmerman K, Kavanagh D, Weiss D, Latorre M, Zhuang ZW, Shadel GS, Braddock DT, Humphrey JD. PMID: 32453981; PMCID: PMC7276555.
      View in: PubMed   Mentions: 16     Fields:    Translation:Animals
    26. Mitochondrial DNA Stress Signalling Protects the Nuclear Genome. Nat Metab. 2019 12; 1(12):1209-1218. Wu Z, Oeck S, West AP, Mangalhara KC, Sainz AG, Newman LE, Zhang XO, Wu L, Yan Q, Bosenberg M, Liu Y, Sulkowski PL, Tripple V, Kaech SM, Glazer PM, Shadel GS. PMID: 32395698; PMCID: PMC7213273.
      View in: PubMed   Mentions: 54     Fields:    Translation:AnimalsCells
    27. Acquired Resistance to HER2-Targeted Therapies Creates Vulnerability to ATP Synthase Inhibition. Cancer Res. 2020 02 01; 80(3):524-535. Gale M, Li Y, Cao J, Liu ZZ, Holmbeck MA, Zhang M, Lang SM, Wu L, Do Carmo M, Gupta S, Aoshima K, DiGiovanna MP, Stern DF, Rimm DL, Shadel GS, Chen X, Yan Q. PMID: 31690671; PMCID: PMC7002225.
      View in: PubMed   Mentions: 23     Fields:    Translation:HumansAnimalsCells
    28. Proteomics of Melanoma Response to Immunotherapy Reveals Mitochondrial Dependence. Cell. 2019 09 19; 179(1):236-250.e18. Harel M, Ortenberg R, Varanasi SK, Mangalhara KC, Mardamshina M, Markovits E, Baruch EN, Tripple V, Arama-Chayoth M, Greenberg E, Shenoy A, Ayasun R, Knafo N, Xu S, Anafi L, Yanovich-Arad G, Barnabas GD, Ashkenazi S, Besser MJ, Schachter J, Bosenberg M, Shadel GS, Barshack I, Kaech SM, Markel G, Geiger T. PMID: 31495571; PMCID: PMC7993352.
      View in: PubMed   Mentions: 127     Fields:    Translation:HumansAnimalsCells
    29. A Mitochondrial-Derived Peptide Exercises the Nuclear Option. Cell Metab. 2018 09 04; 28(3):330-331. Mangalhara KC, Shadel GS. PMID: 30184481.
      View in: PubMed   Mentions: 13     Fields:    Translation:Cells
    30. Pink1/Parkin link inflammation, mitochondrial stress, and neurodegeneration. J Cell Biol. 2018 10 01; 217(10):3327-3329. Newman LE, Shadel GS. PMID: 30154188; PMCID: PMC6168260.
      View in: PubMed   Mentions: 28     Fields:    Translation:HumansCells
    31. Mitohormesis in Mice via Sustained Basal Activation of Mitochondrial and Antioxidant Signaling. Cell Metab. 2018 11 06; 28(5):776-786.e5. Cox CS, McKay SE, Holmbeck MA, Christian BE, Scortea AC, Tsay AJ, Newman LE, Shadel GS. PMID: 30122556; PMCID: PMC6221994.
      View in: PubMed   Mentions: 50     Fields:    Translation:AnimalsCells
    32. KDM5 histone demethylases repress immune response via suppression of STING. PLoS Biol. 2018 08; 16(8):e2006134. Wu L, Cao J, Cai WL, Lang SM, Horton JR, Jansen DJ, Liu ZZ, Chen JF, Zhang M, Mott BT, Pohida K, Rai G, Kales SC, Henderson MJ, Hu X, Jadhav A, Maloney DJ, Simeonov A, Zhu S, Iwasaki A, Hall MD, Cheng X, Shadel GS, Yan Q. PMID: 30080846; PMCID: PMC6095604.
      View in: PubMed   Mentions: 73     Fields:    Translation:HumansCells
    33. Mitochondrial redox sensing by the kinase ATM maintains cellular antioxidant capacity. Sci Signal. 2018 07 10; 11(538). Zhang Y, Lee JH, Paull TT, Gehrke S, D'Alessandro A, Dou Q, Gladyshev VN, Schroeder EA, Steyl SK, Christian BE, Shadel GS. PMID: 29991649; PMCID: PMC6042875.
      View in: PubMed   Mentions: 44     Fields:    Translation:HumansAnimalsCells
    34. Nutritional Interventions for Mitochondrial OXPHOS Deficiencies: Mechanisms and Model Systems. Annu Rev Pathol. 2018 01 24; 13:163-191. Kuszak AJ, Espey MG, Falk MJ, Holmbeck MA, Manfredi G, Shadel GS, Vernon HJ, Zolkipli-Cunningham Z. PMID: 29099651; PMCID: PMC5911915.
      View in: PubMed   Mentions: 15     Fields:    Translation:HumansAnimals
    35. Mitochondrial DNA in innate immune responses and inflammatory pathology. Nat Rev Immunol. 2017 Jun; 17(6):363-375. West AP, Shadel GS. PMID: 28393922; PMCID: PMC7289178.
      View in: PubMed   Mentions: 416     Fields:    Translation:HumansAnimals
    36. Mitochondrial protein interactome elucidated by chemical cross-linking mass spectrometry. Proc Natl Acad Sci U S A. 2017 02 14; 114(7):1732-1737. Schweppe DK, Chavez JD, Lee CF, Caudal A, Kruse SE, Stuppard R, Marcinek DJ, Shadel GS, Tian R, Bruce JE. PMID: 28130547; PMCID: PMC5321032.
      View in: PubMed   Mentions: 81     Fields:    Translation:AnimalsCells
    37. Multi-focal control of mitochondrial gene expression by oncogenic MYC provides potential therapeutic targets in cancer. Oncotarget. 2016 Nov 08; 7(45):72395-72414. Oran AR, Adams CM, Zhang XY, Gennaro VJ, Pfeiffer HK, Mellert HS, Seidel HE, Mascioli K, Kaplan J, Gaballa MR, Shen C, Rigoutsos I, King MP, Cotney JL, Arnold JJ, Sharma SD, Martinez-Outschoorn UE, Vakoc CR, Chodosh LA, Thompson JE, Bradner JE, Cameron CE, Shadel GS, Eischen CM, McMahon SB. PMID: 27590350; PMCID: PMC5340124.
      View in: PubMed   Mentions: 22     Fields:    Translation:HumansAnimalsCells
    38. A Mitochondrial Perspective of Chronic Obstructive Pulmonary Disease Pathogenesis. Tuberc Respir Dis (Seoul). 2016 Oct; 79(4):207-213. Kang MJ, Shadel GS. PMID: 27790272; PMCID: PMC5077724.
      View in: PubMed   Mentions: 19  
    39. Mitochondria provide a 'complex' solution to a bacterial problem. Nat Immunol. 2016 08 19; 17(9):1009-10. Holmbeck MA, Shadel GS. PMID: 27540983.
      View in: PubMed   Mentions: 3     Fields:    Translation:HumansCells
    40. Mitochondrial Ribosomal Protein L12 Is Required for POLRMT Stability and Exists as Two Forms Generated by Alternative Proteolysis during Import. J Biol Chem. 2016 Jan 08; 291(2):989-97. Nouws J, Goswami AV, Bestwick M, McCann BJ, Surovtseva YV, Shadel GS. PMID: 26586915; PMCID: PMC4705416.
      View in: PubMed   Mentions: 21     Fields:    Translation:HumansAnimalsCells
    41. Auditory Pathology in a Transgenic mtTFB1 Mouse Model of Mitochondrial Deafness. Am J Pathol. 2015 Dec; 185(12):3132-40. McKay SE, Yan W, Nouws J, Thormann MJ, Raimundo N, Khan A, Santos-Sacchi J, Song L, Shadel GS. PMID: 26552864; PMCID: PMC5801480.
      View in: PubMed   Mentions: 11     Fields:    Translation:AnimalsCells
    42. Mitochondrial ROS signaling in organismal homeostasis. Cell. 2015 Oct 22; 163(3):560-9. Shadel GS, Horvath TL. PMID: 26496603; PMCID: PMC4634671.
      View in: PubMed   Mentions: 521     Fields:    Translation:HumansAnimalsCells
    43. Macrophage-specific de Novo Synthesis of Ceramide Is Dispensable for Inflammasome-driven Inflammation and Insulin Resistance in Obesity. J Biol Chem. 2015 Dec 04; 290(49):29402-13. Camell CD, Nguyen KY, Jurczak MJ, Christian BE, Shulman GI, Shadel GS, Dixit VD. PMID: 26438821; PMCID: PMC4705943.
      View in: PubMed   Mentions: 37     Fields:    Translation:AnimalsCells
    44. Suppression of NLRX1 in chronic obstructive pulmonary disease. J Clin Invest. 2015 Jun; 125(6):2458-62. Kang MJ, Yoon CM, Kim BH, Lee CM, Zhou Y, Sauler M, Homer R, Dhamija A, Boffa D, West AP, Shadel GS, Ting JP, Tedrow JR, Kaminski N, Kim WJ, Lee CG, Oh YM, Elias JA. PMID: 25938787; PMCID: PMC4497738.
      View in: PubMed   Mentions: 40     Fields:    Translation:HumansAnimalsCellsCTClinical Trials
    45. Interventions to Slow Aging in Humans: Are We Ready? Aging Cell. 2015 Aug; 14(4):497-510. Longo VD, Antebi A, Bartke A, Barzilai N, Brown-Borg HM, Caruso C, Curiel TJ, de Cabo R, Franceschi C, Gems D, Ingram DK, Johnson TE, Kennedy BK, Kenyon C, Klein S, Kopchick JJ, Lepperdinger G, Madeo F, Mirisola MG, Mitchell JR, Passarino G, Rudolph KL, Sedivy JM, Shadel GS, Sinclair DA, Spindler SR, Suh Y, Vijg J, Vinciguerra M, Fontana L. PMID: 25902704; PMCID: PMC4531065.
      View in: PubMed   Mentions: 261     Fields:    Translation:HumansAnimalsCells
    46. Mitochondrial DNA stress primes the antiviral innate immune response. Nature. 2015 Apr 23; 520(7548):553-7. West AP, Khoury-Hanold W, Staron M, Tal MC, Pineda CM, Lang SM, Bestwick M, Duguay BA, Raimundo N, MacDuff DA, Kaech SM, Smiley JR, Means RE, Iwasaki A, Shadel GS. PMID: 25642965; PMCID: PMC4409480.
      View in: PubMed   Mentions: 845     Fields:    Translation:HumansAnimalsCells
    47. Aging-dependent alterations in gene expression and a mitochondrial signature of responsiveness to human influenza vaccination. Aging (Albany NY). 2015 Jan; 7(1):38-52. Thakar J, Mohanty S, West AP, Joshi SR, Ueda I, Wilson J, Meng H, Blevins TP, Tsang S, Trentalange M, Siconolfi B, Park K, Gill TM, Belshe RB, Kaech SM, Shadel GS, Kleinstein SH, Shaw AC. PMID: 25596819; PMCID: PMC4356402.
      View in: PubMed   Mentions: 45     Fields:    Translation:HumansCellsPHPublic Health
    48. Apoptotic caspases prevent the induction of type I interferons by mitochondrial DNA. Cell. 2014 Dec 18; 159(7):1563-77. Rongvaux A, Jackson R, Harman CC, Li T, West AP, de Zoete MR, Wu Y, Yordy B, Lakhani SA, Kuan CY, Taniguchi T, Shadel GS, Chen ZJ, Iwasaki A, Flavell RA. PMID: 25525875; PMCID: PMC4272443.
      View in: PubMed   Mentions: 412     Fields:    Translation:AnimalsCells
    49. Isolation of mitochondria from tissue culture cells. Cold Spring Harb Protoc. 2014 Oct 01; 2014(10):pdb.prot080002. Clayton DA, Shadel GS. PMID: 25275104.
      View in: PubMed   Mentions: 30     Fields:    Translation:HumansAnimalsCells
    50. Isolation of mitochondria from animal tissue. Cold Spring Harb Protoc. 2014 Oct 01; 2014(10):pdb.prot080010. Clayton DA, Shadel GS. PMID: 25275105.
      View in: PubMed   Mentions: 6     Fields:    Translation:AnimalsCells
    51. Isolation of mitochondria from cells and tissues. Cold Spring Harb Protoc. 2014 Oct 01; 2014(10):pdb.top074542. Clayton DA, Shadel GS. PMID: 25275115.
      View in: PubMed   Mentions: 25     Fields:    Translation:HumansAnimalsCells
    52. Purification of mitochondria by sucrose step density gradient centrifugation. Cold Spring Harb Protoc. 2014 Oct 01; 2014(10):pdb.prot080028. Clayton DA, Shadel GS. PMID: 25275106.
      View in: PubMed   Mentions: 21     Fields:    Translation:HumansAnimalsCells
    53. microManaging mitochondrial translation. Cell. 2014 Jul 31; 158(3):477-8. Nouws J, Shadel GS. PMID: 25083863.
      View in: PubMed   Mentions: 5     Fields:    Translation:AnimalsCells
    54. Live longer on MARS: a yeast paradigm of mitochondrial adaptive ROS signaling in aging. Microb Cell. 2014 Apr 23; 1(5):140-144. Shadel GS. PMID: 28357235; PMCID: PMC5354597.
      View in: PubMed   Mentions: 5  
    55. Aging: it's SIRTainly possible to restore mitochondrial dysfunction. Curr Biol. 2014 Mar 03; 24(5):R206-8. Christian BE, Shadel GS. PMID: 24602889.
      View in: PubMed   Mentions: 7     Fields:    Translation:AnimalsCells
    56. MKK3 regulates mitochondrial biogenesis and mitophagy in sepsis-induced lung injury. Am J Physiol Lung Cell Mol Physiol. 2014 Apr 01; 306(7):L604-19. Mannam P, Shinn AS, Srivastava A, Neamu RF, Walker WE, Bohanon M, Merkel J, Kang MJ, Dela Cruz CS, Ahasic AM, Pisani MA, Trentalange M, West AP, Shadel GS, Elias JA, Lee PJ. PMID: 24487387; PMCID: PMC3962628.
      View in: PubMed   Mentions: 50     Fields:    Translation:HumansAnimalsCells
    57. Crosstalk between mitochondrial stress signals regulates yeast chronological lifespan. Mech Ageing Dev. 2014 Jan; 135:41-9. Schroeder EA, Shadel GS. PMID: 24373996; PMCID: PMC3943709.
      View in: PubMed   Mentions: 12     Fields:    Translation:AnimalsCells
    58. Intrinsic mitochondrial DNA repair defects in Ataxia Telangiectasia. DNA Repair (Amst). 2014 Jan; 13:22-31. Sharma NK, Lebedeva M, Thomas T, Kovalenko OA, Stumpf JD, Shadel GS, Santos JH. PMID: 24342190; PMCID: PMC6211587.
      View in: PubMed   Mentions: 34     Fields:    Translation:HumansAnimalsCells
    59. Epigenetic silencing mediates mitochondria stress-induced longevity. Cell Metab. 2013 Jun 04; 17(6):954-964. Schroeder EA, Raimundo N, Shadel GS. PMID: 23747251; PMCID: PMC3694503.
      View in: PubMed   Mentions: 105     Fields:    Translation:AnimalsCells
    60. Accessorizing the human mitochondrial transcription machinery. Trends Biochem Sci. 2013 Jun; 38(6):283-91. Bestwick ML, Shadel GS. PMID: 23632312; PMCID: PMC3698603.
      View in: PubMed   Mentions: 43     Fields:    Translation:HumansCells
    61. Transcription-independent role for human mitochondrial RNA polymerase in mitochondrial ribosome biogenesis. Nucleic Acids Res. 2013 Feb 01; 41(4):2479-88. Surovtseva YV, Shadel GS. PMID: 23303773; PMCID: PMC3575816.
      View in: PubMed   Mentions: 23     Fields:    Translation:HumansCells
    62. Reducing mitochondrial ROS improves disease-related pathology in a mouse model of ataxia-telangiectasia. Mol Ther. 2013 Jan; 21(1):42-8. D'Souza AD, Parish IA, Krause DS, Kaech SM, Shadel GS. PMID: 23011031; PMCID: PMC3538311.
      View in: PubMed   Mentions: 38     Fields:    Translation:AnimalsCells
    63. Mitochondrial respiratory thresholds regulate yeast chronological life span and its extension by caloric restriction. Cell Metab. 2012 Jul 03; 16(1):55-67. Ocampo A, Liu J, Schroeder EA, Shadel GS, Barrientos A. PMID: 22768839; PMCID: PMC3397320.
      View in: PubMed   Mentions: 108     Fields:    Translation:AnimalsCells
    64. Replicative and chronological aging in Saccharomyces cerevisiae. Cell Metab. 2012 Jul 03; 16(1):18-31. Longo VD, Shadel GS, Kaeberlein M, Kennedy B. PMID: 22768836; PMCID: PMC3392685.
      View in: PubMed   Mentions: 298     Fields:    Translation:HumansAnimals
    65. Transcription from the second heavy-strand promoter of human mtDNA is repressed by transcription factor A in vitro. Proc Natl Acad Sci U S A. 2012 Apr 24; 109(17):6513-8. Lodeiro MF, Uchida A, Bestwick M, Moustafa IM, Arnold JJ, Shadel GS, Cameron CE. PMID: 22493245; PMCID: PMC3340051.
      View in: PubMed   Mentions: 33     Fields:    Translation:HumansCells
    66. Alternative mitochondrial fuel extends life span. Cell Metab. 2012 Apr 04; 15(4):417-8. Schroeder EA, Shadel GS. PMID: 22482723; PMCID: PMC3432500.
      View in: PubMed   Mentions: 10     Fields:    
    67. Mitochondrial stress engages E2F1 apoptotic signaling to cause deafness. Cell. 2012 Feb 17; 148(4):716-26. Raimundo N, Song L, Shutt TE, McKay SE, Cotney J, Guan MX, Gilliland TC, Hohuan D, Santos-Sacchi J, Shadel GS. PMID: 22341444; PMCID: PMC3285425.
      View in: PubMed   Mentions: 100     Fields:    Translation:HumansAnimalsCells
    68. Mitochondrial genome instability and ROS enhance intestinal tumorigenesis in APC(Min/+) mice. Am J Pathol. 2012 Jan; 180(1):24-31. Woo DK, Green PD, Santos JH, D'Souza AD, Walther Z, Martin WD, Christian BE, Chandel NS, Shadel GS. PMID: 22056359; PMCID: PMC3338350.
      View in: PubMed   Mentions: 82     Fields:    Translation:Animals
    69. Mitochondrial ribosomal protein L12 selectively associates with human mitochondrial RNA polymerase to activate transcription. Proc Natl Acad Sci U S A. 2011 Nov 01; 108(44):17921-6. Surovtseva YV, Shutt TE, Cotney J, Cimen H, Chen SY, Koc EC, Shadel GS. PMID: 22003127; PMCID: PMC3207702.
      View in: PubMed   Mentions: 39     Fields:    Translation:HumansCells
    70. LRP130 protein remodels mitochondria and stimulates fatty acid oxidation. J Biol Chem. 2011 Dec 02; 286(48):41253-41264. Liu L, Sanosaka M, Lei S, Bestwick ML, Frey JH, Surovtseva YV, Shadel GS, Cooper MP. PMID: 21971050; PMCID: PMC3308838.
      View in: PubMed   Mentions: 26     Fields:    Translation:HumansAnimalsCells
    71. Transcriptional activation by mitochondrial transcription factor A involves preferential distortion of promoter DNA. Nucleic Acids Res. 2012 Jan; 40(2):614-24. Malarkey CS, Bestwick M, Kuhlwilm JE, Shadel GS, Churchill ME. PMID: 21948790; PMCID: PMC3258160.
      View in: PubMed   Mentions: 37     Fields:    Translation:HumansCells
    72. Genomic imprinting at a boundary element flanking the SDHD locus. Hum Mol Genet. 2011 Nov 15; 20(22):4452-61. Baysal BE, McKay SE, Kim YJ, Zhang Z, Alila L, Willett-Brozick JE, Pacak K, Kim TH, Shadel GS. PMID: 21862453; PMCID: PMC3196894.
      View in: PubMed   Mentions: 8     Fields:    Translation:HumansCells
    73. Revisiting the TCA cycle: signaling to tumor formation. Trends Mol Med. 2011 Nov; 17(11):641-9. Raimundo N, Baysal BE, Shadel GS. PMID: 21764377; PMCID: PMC3205302.
      View in: PubMed   Mentions: 114     Fields:    Translation:HumansAnimalsCells
    74. Regulation of yeast chronological life span by TORC1 via adaptive mitochondrial ROS signaling. Cell Metab. 2011 Jun 08; 13(6):668-78. Pan Y, Schroeder EA, Ocampo A, Barrientos A, Shadel GS. PMID: 21641548; PMCID: PMC3110654.
      View in: PubMed   Mentions: 170     Fields:    Translation:AnimalsCells
    75. Aberrant CD8+ T-cell responses and memory differentiation upon viral infection of an ataxia-telangiectasia mouse model driven by hyper-activated Akt and mTORC1 signaling. Am J Pathol. 2011 Jun; 178(6):2740-51. D'Souza AD, Parish IA, McKay SE, Kaech SM, Shadel GS. PMID: 21641396; PMCID: PMC3124231.
      View in: PubMed   Mentions: 8     Fields:    Translation:AnimalsCells
    76. Repression of mitochondrial translation, respiration and a metabolic cycle-regulated gene, SLF1, by the yeast Pumilio-family protein Puf3p. PLoS One. 2011; 6(5):e20441. Chatenay-Lapointe M, Shadel GS. PMID: 21655263; PMCID: PMC3105058.
      View in: PubMed   Mentions: 22     Fields:    Translation:Cells
    77. Mitochondria in innate immune responses. Nat Rev Immunol. 2011 Jun; 11(6):389-402. West AP, Shadel GS, Ghosh S. PMID: 21597473; PMCID: PMC4281487.
      View in: PubMed   Mentions: 561     Fields:    Translation:HumansAnimalsCells
    78. TLR signalling augments macrophage bactericidal activity through mitochondrial ROS. Nature. 2011 Apr 28; 472(7344):476-80. West AP, Brodsky IE, Rahner C, Woo DK, Erdjument-Bromage H, Tempst P, Walsh MC, Choi Y, Shadel GS, Ghosh S. PMID: 21525932; PMCID: PMC3460538.
      View in: PubMed   Mentions: 734     Fields:    Translation:AnimalsCells
    79. The core human mitochondrial transcription initiation complex: It only takes two to tango. Transcription. 2011 Mar; 2(2):55-59. Shutt TE, Bestwick M, Shadel GS. PMID: 21468229; PMCID: PMC3062394.
      View in: PubMed   Mentions: 24     Fields:    
    80. Mitochondrial stress signals revise an old aging theory. Cell. 2011 Jan 07; 144(1):11-2. Woo DK, Shadel GS. PMID: 21215364.
      View in: PubMed   Mentions: 32     Fields:    
    81. Targeted expression of catalase to mitochondria prevents age-associated reductions in mitochondrial function and insulin resistance. Cell Metab. 2010 Dec 01; 12(6):668-74. Lee HY, Choi CS, Birkenfeld AL, Alves TC, Jornayvaz FR, Jurczak MJ, Zhang D, Woo DK, Shadel GS, Ladiges W, Rabinovitch PS, Santos JH, Petersen KF, Samuel VT, Shulman GI. PMID: 21109199; PMCID: PMC3013349.
      View in: PubMed   Mentions: 176     Fields:    Translation:HumansAnimalsCells
    82. Stressed-out mitochondria get MAD. Cell Metab. 2010 Dec 01; 12(6):559-60. Chatenay-Lapointe M, Shadel GS. PMID: 21109188; PMCID: PMC3018381.
      View in: PubMed   Mentions: 7     Fields:    
    83. Core human mitochondrial transcription apparatus is a regulated two-component system in vitro. Proc Natl Acad Sci U S A. 2010 Jul 06; 107(27):12133-8. Shutt TE, Lodeiro MF, Cotney J, Cameron CE, Shadel GS. PMID: 20562347; PMCID: PMC2901451.
      View in: PubMed   Mentions: 52     Fields:    Translation:HumansCells
    84. A compendium of human mitochondrial gene expression machinery with links to disease. Environ Mol Mutagen. 2010 Jun; 51(5):360-79. Shutt TE, Shadel GS. PMID: 20544879; PMCID: PMC2886302.
      View in: PubMed   Mentions: 45     Fields:    Translation:HumansCells
    85. Multi-faceted regulation of mitochondria by TOR. Cell Cycle. 2009 Jul 15; 8(14):2143. Shadel GS, Pan Y. PMID: 19587547.
      View in: PubMed   Mentions: 3     Fields:    Translation:Cells
    86. Checkpoint kinase phosphorylation in response to endogenous oxidative DNA damage in repair-deficient stationary-phase Saccharomyces cerevisiae. Mech Ageing Dev. 2009 Aug; 130(8):501-8. Pawar V, Jingjing L, Patel N, Kaur N, Doetsch PW, Shadel GS, Zhang H, Siede W. PMID: 19540258; PMCID: PMC2716406.
      View in: PubMed   Mentions: 5     Fields:    Translation:AnimalsCells
    87. Monocyte activation by necrotic cells is promoted by mitochondrial proteins and formyl peptide receptors. Crit Care Med. 2009 Jun; 37(6):2000-9. Crouser ED, Shao G, Julian MW, Macre JE, Shadel GS, Tridandapani S, Huang Q, Wewers MD. PMID: 19384205; PMCID: PMC2743203.
      View in: PubMed   Mentions: 48     Fields:    Translation:HumansCells
    88. Ancient mtDNA genetic variants modulate mtDNA transcription and replication. PLoS Genet. 2009 May; 5(5):e1000474. Suissa S, Wang Z, Poole J, Wittkopp S, Feder J, Shutt TE, Wallace DC, Shadel GS, Mishmar D. PMID: 19424428; PMCID: PMC2673036.
      View in: PubMed   Mentions: 80     Fields:    Translation:HumansCells
    89. Elucidation of separate, but collaborative functions of the rRNA methyltransferase-related human mitochondrial transcription factors B1 and B2 in mitochondrial biogenesis reveals new insight into maternally inherited deafness. Hum Mol Genet. 2009 Jul 15; 18(14):2670-82. Cotney J, McKay SE, Shadel GS. PMID: 19417006; PMCID: PMC2701340.
      View in: PubMed   Mentions: 43     Fields:    Translation:HumansCells
    90. A "radical" mitochondrial view of autophagy-related pathology. Aging (Albany NY). 2009 Apr 08; 1(4):354-6. Raimundo N, Shadel GS. PMID: 20157522; PMCID: PMC2806015.
      View in: PubMed   Mentions: 1     Fields:    Translation:AnimalsCells
    91. Absence of autophagy results in reactive oxygen species-dependent amplification of RLR signaling. Proc Natl Acad Sci U S A. 2009 Feb 24; 106(8):2770-5. Tal MC, Sasai M, Lee HK, Yordy B, Shadel GS, Iwasaki A. PMID: 19196953; PMCID: PMC2650341.
      View in: PubMed   Mentions: 334     Fields:    Translation:AnimalsCells
    92. Extension of chronological life span by reduced TOR signaling requires down-regulation of Sch9p and involves increased mitochondrial OXPHOS complex density. Aging (Albany NY). 2009 Jan 28; 1(1):131-45. Pan Y, Shadel GS. PMID: 20157595; PMCID: PMC2815770.
      View in: PubMed   Mentions: 95     Fields:    Translation:AnimalsCells
    93. Loss of p53 causes mitochondrial DNA depletion and altered mitochondrial reactive oxygen species homeostasis. Biochim Biophys Acta. 2009 May; 1787(5):328-34. Lebedeva MA, Eaton JS, Shadel GS. PMID: 19413947; PMCID: PMC2680458.
      View in: PubMed   Mentions: 89     Fields:    Translation:HumansAnimalsCells
    94. Mitochondrial DNA oxidative damage and mutagenesis in Saccharomyces cerevisiae. Methods Mol Biol. 2009; 554:267-86. Griffiths LM, Doudican NA, Shadel GS, Doetsch PW. PMID: 19513680.
      View in: PubMed   Mentions: 5     Fields:    Translation:AnimalsCells
    95. Into the wild frontier of mitochondrial disease and aging. Methods. 2008 Dec; 46(4):239-40. Shadel GS. PMID: 19027636.
      View in: PubMed   Mentions:    Fields:    Translation:HumansAnimalsCells
    96. Debut of MitoMatters. Mitochondrion. 2008 Sep; 8(4):338. Shadel GS. PMID: 18775517.
      View in: PubMed   Mentions:    Fields:    Translation:HumansAnimalsCells
    97. Expression of the rDNA-encoded mitochondrial protein Tar1p is stringently controlled and responds differentially to mitochondrial respiratory demand and dysfunction. Curr Genet. 2008 Aug; 54(2):83-94. Bonawitz ND, Chatenay-Lapointe M, Wearn CM, Shadel GS. PMID: 18622616; PMCID: PMC2799293.
      View in: PubMed   Mentions: 14     Fields:    Translation:AnimalsCells
    98. Expression and maintenance of mitochondrial DNA: new insights into human disease pathology. Am J Pathol. 2008 Jun; 172(6):1445-56. Shadel GS. PMID: 18458094; PMCID: PMC2408405.
      View in: PubMed   Mentions: 64     Fields:    Translation:HumansAnimalsCells
    99. Prohibitin-1 maintains the angiogenic capacity of endothelial cells by regulating mitochondrial function and senescence. J Cell Biol. 2008 Jan 14; 180(1):101-12. Schleicher M, Shepherd BR, Suarez Y, Fernandez-Hernando C, Yu J, Pan Y, Acevedo LM, Shadel GS, Sessa WC. PMID: 18195103; PMCID: PMC2213620.
      View in: PubMed   Mentions: 88     Fields:    Translation:HumansAnimalsCells
    100. Ataxia-telangiectasia mutated kinase regulates ribonucleotide reductase and mitochondrial homeostasis. J Clin Invest. 2007 Sep; 117(9):2723-34. Eaton JS, Lin ZP, Sartorelli AC, Bonawitz ND, Shadel GS. PMID: 17786248; PMCID: PMC1952633.
      View in: PubMed   Mentions: 103     Fields:    Translation:HumansCells
    101. Convergence of multiple signaling pathways is required to coordinately up-regulate mtDNA and mitochondrial biogenesis during T cell activation. Mitochondrion. 2007 Dec; 7(6):374-85. D'Souza AD, Parikh N, Kaech SM, Shadel GS. PMID: 17890163; PMCID: PMC2692272.
      View in: PubMed   Mentions: 45     Fields:    Translation:AnimalsCells
    102. Relative abundance of the human mitochondrial transcription system and distinct roles for h-mtTFB1 and h-mtTFB2 in mitochondrial biogenesis and gene expression. Nucleic Acids Res. 2007; 35(12):4042-54. Cotney J, Wang Z, Shadel GS. PMID: 17557812; PMCID: PMC1919481.
      View in: PubMed   Mentions: 64     Fields:    Translation:HumansCells
    103. Cell cycle- and ribonucleotide reductase-driven changes in mtDNA copy number influence mtDNA Inheritance without compromising mitochondrial gene expression. Cell Cycle. 2007 Aug 15; 6(16):2048-57. Lebedeva MA, Shadel GS. PMID: 17721079; PMCID: PMC2606055.
      View in: PubMed   Mentions: 26     Fields:    Translation:Cells
    104. Rethinking the mitochondrial theory of aging: the role of mitochondrial gene expression in lifespan determination. Cell Cycle. 2007 Jul 01; 6(13):1574-8. Bonawitz ND, Shadel GS. PMID: 17603300.
      View in: PubMed   Mentions: 22     Fields:    Translation:HumansAnimals
    105. Reduced TOR signaling extends chronological life span via increased respiration and upregulation of mitochondrial gene expression. Cell Metab. 2007 Apr; 5(4):265-77. Bonawitz ND, Chatenay-Lapointe M, Pan Y, Shadel GS. PMID: 17403371; PMCID: PMC3460550.
      View in: PubMed   Mentions: 224     Fields:    Translation:AnimalsCells
    106. Human mitochondrial ribosomal protein MRPL12 interacts directly with mitochondrial RNA polymerase to modulate mitochondrial gene expression. J Biol Chem. 2007 Apr 27; 282(17):12610-8. Wang Z, Cotney J, Shadel GS. PMID: 17337445; PMCID: PMC2606046.
      View in: PubMed   Mentions: 53     Fields:    Translation:HumansAnimalsCells
    107. Endothelial-specific expression of mitochondrial thioredoxin improves endothelial cell function and reduces atherosclerotic lesions. Am J Pathol. 2007 Mar; 170(3):1108-20. Zhang H, Luo Y, Zhang W, He Y, Dai S, Zhang R, Huang Y, Bernatchez P, Giordano FJ, Shadel G, Sessa WC, Min W. PMID: 17322393; PMCID: PMC1864879.
      View in: PubMed   Mentions: 70     Fields:    Translation:AnimalsCells
    108. Expanding the mitochondrial interactome. Genome Biol. 2007; 8(2):203. Shutt TE, Shadel GS. PMID: 17319976; PMCID: PMC1852417.
      View in: PubMed   Mentions: 4     Fields:    Translation:AnimalsCells
    109. Diagnostic assays for defects in mtDNA replication and transcription in yeast and humans. Methods Cell Biol. 2007; 80:465-79. Shadel GS, Seidel-Rogol BL. PMID: 17445709.
      View in: PubMed   Mentions: 3     Fields:    Translation:HumansAnimalsCells
    110. Initiation and beyond: multiple functions of the human mitochondrial transcription machinery. Mol Cell. 2006 Dec 28; 24(6):813-25. Bonawitz ND, Clayton DA, Shadel GS. PMID: 17189185.
      View in: PubMed   Mentions: 185     Fields:    Translation:HumansCells
    111. Excess ribonucleotide reductase R2 subunits coordinate the S phase checkpoint to facilitate DNA damage repair and recovery from replication stress. Biochem Pharmacol. 2007 Mar 15; 73(6):760-72. Lin ZP, Belcourt MF, Carbone R, Eaton JS, Penketh PG, Shadel GS, Cory JG, Sartorelli AC. PMID: 17188250.
      View in: PubMed   Mentions: 23     Fields:    Translation:HumansCells
    112. Evidence for an early gene duplication event in the evolution of the mitochondrial transcription factor B family and maintenance of rRNA methyltransferase activity in human mtTFB1 and mtTFB2. J Mol Evol. 2006 Nov; 63(5):707-17. Cotney J, Shadel GS. PMID: 17031457.
      View in: PubMed   Mentions: 48     Fields:    Translation:HumansAnimalsCells
    113. Defective mitochondrial gene expression results in reactive oxygen species-mediated inhibition of respiration and reduction of yeast life span. Mol Cell Biol. 2006 Jul; 26(13):4818-29. Bonawitz ND, Rodeheffer MS, Shadel GS. PMID: 16782871; PMCID: PMC1489155.
      View in: PubMed   Mentions: 57     Fields:    Translation:AnimalsCells
    114. Differential involvement of the related DNA helicases Pif1p and Rrm3p in mtDNA point mutagenesis and stability. Gene. 2005 Jul 18; 354:86-92. O'Rourke TW, Doudican NA, Zhang H, Eaton JS, Doetsch PW, Shadel GS. PMID: 15907372.
      View in: PubMed   Mentions: 30     Fields:    Translation:AnimalsCells
    115. Oxidative DNA damage causes mitochondrial genomic instability in Saccharomyces cerevisiae. Mol Cell Biol. 2005 Jun; 25(12):5196-204. Doudican NA, Song B, Shadel GS, Doetsch PW. PMID: 15923634; PMCID: PMC1140570.
      View in: PubMed   Mentions: 49     Fields:    Translation:AnimalsCells
    116. Mitochondrial DNA, aconitase 'wraps' it up. Trends Biochem Sci. 2005 Jun; 30(6):294-6. Shadel GS. PMID: 15950872.
      View in: PubMed   Mentions: 19     Fields:    Translation:Cells
    117. The conserved Mec1/Rad53 nuclear checkpoint pathway regulates mitochondrial DNA copy number in Saccharomyces cerevisiae. Mol Biol Cell. 2005 Jun; 16(6):3010-8. Taylor SD, Zhang H, Eaton JS, Rodeheffer MS, Lebedeva MA, O'rourke TW, Siede W, Shadel GS. PMID: 15829566; PMCID: PMC1142443.
      View in: PubMed   Mentions: 58     Fields:    Translation:Animals
    118. Coupling the mitochondrial transcription machinery to human disease. Trends Genet. 2004 Oct; 20(10):513-9. Shadel GS. PMID: 15363906.
      View in: PubMed   Mentions: 36     Fields:    Translation:HumansAnimalsCells
    119. A dual-function mitochondrial transcription factor tunes out deafness. Mol Genet Metab. 2004 May; 82(1):1-3. Shadel GS. PMID: 15110315.
      View in: PubMed   Mentions: 4     Fields:    Translation:HumansCells
    120. Human mitochondrial transcription factor B1 interacts with the C-terminal activation region of h-mtTFA and stimulates transcription independently of its RNA methyltransferase activity. Mol Cell Biol. 2003 Aug; 23(16):5816-24. McCulloch V, Shadel GS. PMID: 12897151; PMCID: PMC166325.
      View in: PubMed   Mentions: 59     Fields:    Translation:HumansCells
    121. Multiple interactions involving the amino-terminal domain of yeast mtRNA polymerase determine the efficiency of mitochondrial protein synthesis. J Biol Chem. 2003 May 16; 278(20):18695-701. Rodeheffer MS, Shadel GS. PMID: 12637560; PMCID: PMC2606056.
      View in: PubMed   Mentions: 34     Fields:    Translation:AnimalsCells
    122. Human mitochondrial transcription factor B1 methylates ribosomal RNA at a conserved stem-loop. Nat Genet. 2003 Jan; 33(1):23-4. Seidel-Rogol BL, McCulloch V, Shadel GS. PMID: 12496758.
      View in: PubMed   Mentions: 93     Fields:    Translation:HumansCells
    123. A novel mitochondrial protein, Tar1p, is encoded on the antisense strand of the nuclear 25S rDNA. Genes Dev. 2002 Nov 01; 16(21):2755-60. Coelho PS, Bryan AC, Kumar A, Shadel GS, Snyder M. PMID: 12414727; PMCID: PMC187471.
      View in: PubMed   Mentions: 31     Fields:    Translation:AnimalsCells
    124. Mitochondrial dysfunction due to oxidative mitochondrial DNA damage is reduced through cooperative actions of diverse proteins. Mol Cell Biol. 2002 Jun; 22(12):4086-93. O'Rourke TW, Doudican NA, Mackereth MD, Doetsch PW, Shadel GS. PMID: 12024022; PMCID: PMC133882.
      View in: PubMed   Mentions: 54     Fields:    Translation:AnimalsCells
    125. Modulation of mitochondrial transcription in response to mtDNA depletion and repletion in HeLa cells. Nucleic Acids Res. 2002 May 01; 30(9):1929-34. Seidel-Rogol BL, Shadel GS. PMID: 11972329; PMCID: PMC113853.
      View in: PubMed   Mentions: 55     Fields:    Translation:HumansCells
    126. A human mitochondrial transcription factor is related to RNA adenine methyltransferases and binds S-adenosylmethionine. Mol Cell Biol. 2002 Feb; 22(4):1116-25. McCulloch V, Seidel-Rogol BL, Shadel GS. PMID: 11809803; PMCID: PMC134642.
      View in: PubMed   Mentions: 72     Fields:    Translation:HumansCells
    127. Sls1p is a membrane-bound regulator of transcription-coupled processes involved in Saccharomyces cerevisiae mitochondrial gene expression. Genetics. 2002 Jan; 160(1):75-82. Bryan AC, Rodeheffer MS, Wearn CM, Shadel GS. PMID: 11805046; PMCID: PMC1461927.
      View in: PubMed   Mentions: 24     Fields:    Translation:AnimalsCells
    128. Diagnostic assays for defects in mitochondrial DNA replication and transcription in yeast and human cells. Methods Cell Biol. 2001; 65:413-27. Seidel-Rogol BL, Shadel GS. PMID: 11381607.
      View in: PubMed   Mentions:    Fields:    Translation:HumansAnimalsCells
    129. Nam1p, a protein involved in RNA processing and translation, is coupled to transcription through an interaction with yeast mitochondrial RNA polymerase. J Biol Chem. 2001 Mar 16; 276(11):8616-22. Rodeheffer MS, Boone BE, Bryan AC, Shadel GS. PMID: 11118450; PMCID: PMC2606050.
      View in: PubMed   Mentions: 40     Fields:    Translation:AnimalsCells
    130. Mutational analysis of the RNA component of Saccharomyces cerevisiae RNase MRP reveals distinct nuclear phenotypes. Gene. 2000 Mar 07; 245(1):175-84. Shadel GS, Buckenmeyer GA, Clayton DA, Schmitt ME. PMID: 10713458.
      View in: PubMed   Mentions: 24     Fields:    Translation:AnimalsCells
    131. Assay of autoinducer activity with luminescent Escherichia coli sensor strains harboring a modified Vibrio fischeri lux regulon. Methods Enzymol. 2000; 305:279-87. Devine JH, Shadel GS. PMID: 10812607.
      View in: PubMed   Mentions:    Fields:    Translation:Cells
    132. Yeast as a model for human mtDNA replication. Am J Hum Genet. 1999 Nov; 65(5):1230-7. Shadel GS. PMID: 10521287; PMCID: PMC1288274.
      View in: PubMed   Mentions: 29     Fields:    Translation:HumansAnimalsCells
    133. Stability of the mitochondrial genome requires an amino-terminal domain of yeast mitochondrial RNA polymerase. Proc Natl Acad Sci U S A. 1999 Jul 06; 96(14):8046-51. Wang Y, Shadel GS. PMID: 10393945; PMCID: PMC22185.
      View in: PubMed   Mentions: 22     Fields:    Translation:AnimalsCells
    134. Mitochondrial DNA maintenance in vertebrates. Annu Rev Biochem. 1997; 66:409-35. Shadel GS, Clayton DA. PMID: 9242913.
      View in: PubMed   Mentions: 300     Fields:    Translation:HumansAnimalsCells
    135. Autoinducer-independent mutants of the LuxR transcriptional activator exhibit differential effects on the two lux promoters of Vibrio fischeri. Mol Gen Genet. 1996 Oct 16; 252(5):622-5. Sitnikov DM, Shadel GS, Baldwin TO. PMID: 8914523.
      View in: PubMed   Mentions: 5     Fields:    Translation:Cells
    136. Functional conservation of yeast mtTFB despite extensive sequence divergence. Gene Expr. 1996; 6(4):219-30. Carrodeguas JA, Yun S, Shadel GS, Clayton DA, Bogenhagen DF. PMID: 9196077; PMCID: PMC6148273.
      View in: PubMed   Mentions: 9     Fields:    Translation:AnimalsCells
    137. Mapping promoters in displacement-loop region of vertebrate mitochondrial DNA. Methods Enzymol. 1996; 264:139-48. Shadel GS, Clayton DA. PMID: 8965688.
      View in: PubMed   Mentions:    Fields:    Translation:HumansAnimalsCells
    138. Isolation and characterization of vertebrate mitochondrial transcription factor A homologs. Methods Enzymol. 1996; 264:149-58. Shadel GS, Clayton DA. PMID: 8965689.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansAnimalsCells
    139. Addition of a 29 residue carboxyl-terminal tail converts a simple HMG box-containing protein into a transcriptional activator. J Mol Biol. 1995 May 26; 249(1):11-28. Dairaghi DJ, Shadel GS, Clayton DA. PMID: 7776365.
      View in: PubMed   Mentions: 89     Fields:    Translation:HumansAnimalsCells
    140. Human mitochondrial transcription factor A and promoter spacing integrity are required for transcription initiation. Biochim Biophys Acta. 1995 May 24; 1271(1):127-34. Dairaghi DJ, Shadel GS, Clayton DA. PMID: 7599198.
      View in: PubMed   Mentions: 36     Fields:    Translation:HumansAnimalsCells
    141. A Saccharomyces cerevisiae mitochondrial transcription factor, sc-mtTFB, shares features with sigma factors but is functionally distinct. Mol Cell Biol. 1995 Apr; 15(4):2101-8. Shadel GS, Clayton DA. PMID: 7891705; PMCID: PMC230437.
      View in: PubMed   Mentions: 32     Fields:    Translation:AnimalsCells
    142. Mitochondrial transcription initiation. Variation and conservation. J Biol Chem. 1993 Aug 05; 268(22):16083-6. Shadel GS, Clayton DA. PMID: 8344889.
      View in: PubMed   Mentions: 62     Fields:    Translation:HumansAnimalsCells
    143. Identification of a distantly located regulatory element in the luxD gene required for negative autoregulation of the Vibrio fischeri luxR gene. J Biol Chem. 1992 Apr 15; 267(11):7690-5. Shadel GS, Baldwin TO. PMID: 1560004.
      View in: PubMed   Mentions: 10     Fields:    Translation:Cells
    144. Positive autoregulation of the Vibrio fischeri luxR gene. LuxR and autoinducer activate cAMP-catabolite gene activator protein complex-independent and -dependent luxR transcription. J Biol Chem. 1992 Apr 15; 267(11):7696-702. Shadel GS, Baldwin TO. PMID: 1373136.
      View in: PubMed   Mentions: 19     Fields:    Translation:Cells
    145. The Vibrio fischeri LuxR protein is capable of bidirectional stimulation of transcription and both positive and negative regulation of the luxR gene. J Bacteriol. 1991 Jan; 173(2):568-74. Shadel GS, Baldwin TO. PMID: 1987152; PMCID: PMC207047.
      View in: PubMed   Mentions: 35     Fields:    Translation:Cells
    146. Use of regulated cell lysis in a lethal genetic selection in Escherichia coli: identification of the autoinducer-binding region of the LuxR protein from Vibrio fischeri ATCC 7744. J Bacteriol. 1990 Jul; 172(7):3980-7. Shadel GS, Young R, Baldwin TO. PMID: 2141835; PMCID: PMC213383.
      View in: PubMed   Mentions: 37     Fields:    Translation:Cells
    147. Control of the lux regulon of Vibrio fischeri. J Biolumin Chemilumin. 1990 Apr-Jun; 5(2):99-106. Shadel GS, Devine JH, Baldwin TO. PMID: 2186599.
      View in: PubMed   Mentions: 17     Fields:    Translation:Cells
    148. Identification of the operator of the lux regulon from the Vibrio fischeri strain ATCC7744. Proc Natl Acad Sci U S A. 1989 Aug; 86(15):5688-92. Devine JH, Shadel GS, Baldwin TO. PMID: 2762291; PMCID: PMC297695.
      View in: PubMed   Mentions: 81     Fields:    Translation:Cells
    149. The complete nucleotide sequence of the lux regulon of Vibrio fischeri and the luxABN region of Photobacterium leiognathi and the mechanism of control of bacterial bioluminescence. J Biolumin Chemilumin. 1989 Jul; 4(1):326-41. Baldwin TO, Devine JH, Heckel RC, Lin JW, Shadel GS. PMID: 2801220.
      View in: PubMed   Mentions: 31     Fields:    Translation:Cells
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