Henry Abarbanel

Title(s)Professor, Physics
SchoolVc-academic Affairs
Address9500 Gilman Drive #
La Jolla CA 92093
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    1. Constraining chaos: Enforcing dynamical invariants in the training of reservoir computers. Chaos. 2023 Oct 01; 33(10). Platt JA, Penny SG, Smith TA, Chen TC, Abarbanel HDI. PMID: 37788385.
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    2. A systematic exploration of reservoir computing for forecasting complex spatiotemporal dynamics. Neural Netw. 2022 Sep; 153:530-552. Platt JA, Penny SG, Smith TA, Chen TC, Abarbanel HDI. PMID: 35839598.
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    3. Reduced-Dimension, Biophysical Neuron Models Constructed From Observed Data. Neural Comput. 2022 06 16; 34(7):1545-1587. Clark R, Fuller L, Platt JA, Abarbanel HDI. PMID: 35671464.
      View in: PubMed   Mentions:    Fields:    Translation:Cells
    4. Robust forecasting using predictive generalized synchronization in reservoir computing. Chaos. 2021 Dec; 31(12):123118. Platt JA, Wong A, Clark R, Penny SG, Abarbanel HDI. PMID: 34972341.
      View in: PubMed   Mentions: 5     Fields:    
    5. A personal retrospective on the 60th anniversary of the journal biological cybernetics. Biol Cybern. 2021 06; 115(3):205-206. Abarbanel HDI. PMID: 34037854.
      View in: PubMed   Mentions: 1     Fields:    
    6. Machine Learning of Time Series Using Time-Delay Embedding and Precision Annealing. Neural Comput. 2019 10; 31(10):2004-2024. Ty AJA, Fang Z, Gonzalez RA, Rozdeba PJ, Abarbanel HDI. PMID: 31393828.
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    7. Machine Learning: Deepest Learning as Statistical Data Assimilation Problems. Neural Comput. 2018 08; 30(8):2025-2055. Abarbanel HDI, Rozdeba PJ, Shirman S. PMID: 29894650.
      View in: PubMed   Mentions: 3     Fields:    
    8. Response to "Comment on 'A unifying view of synchronization for data assimilation in complex nonlinear networks'" [Chaos 28, 028101 (2018)]. Chaos. 2018 02; 28(2):028102. Abarbanel HDI, Shirman S, Breen D, Kadakia N, Rey D, Armstrong E, Margoliash D. PMID: 29495669.
      View in: PubMed   Mentions:    Fields:    
    9. A unifying view of synchronization for data assimilation in complex nonlinear networks. Chaos. 2017 Dec; 27(12):126802. Abarbanel HDI, Shirman S, Breen D, Kadakia N, Rey D, Armstrong E, Margoliash D. PMID: 29289057.
      View in: PubMed   Mentions: 2     Fields:    
    10. Assimilation of Biophysical Neuronal Dynamics in Neuromorphic VLSI. IEEE Trans Biomed Circuits Syst. 2017 12; 11(6):1258-1270. Wang J, Breen D, Akinin A, Broccard F, Abarbanel HDI, Cauwenberghs G. PMID: 29324422.
      View in: PubMed   Mentions: 3     Fields:    Translation:HumansAnimalsCells
    11. Nonlinear statistical data assimilation for HVC[Formula: see text] neurons in the avian song system. Biol Cybern. 2016 12; 110(6):417-434. Kadakia N, Armstrong E, Breen D, Morone U, Daou A, Margoliash D, Abarbanel HDI. PMID: 27688218; PMCID: PMC8136132.
      View in: PubMed   Mentions: 11     Fields:    Translation:AnimalsCells
    12. Automatic Construction of Predictive Neuron Models through Large Scale Assimilation of Electrophysiological Data. Sci Rep. 2016 09 08; 6:32749. Nogaret A, Meliza CD, Margoliash D, Abarbanel HD. PMID: 27605157; PMCID: PMC5015021.
      View in: PubMed   Mentions: 9     Fields:    Translation:AnimalsCells
    13. Model of the songbird nucleus HVC as a network of central pattern generators. J Neurophysiol. 2016 11 01; 116(5):2405-2419. Armstrong E, Abarbanel HD. PMID: 27535375; PMCID: PMC5116487.
      View in: PubMed   Mentions: 6     Fields:    Translation:Animals
    14. Systematic variational method for statistical nonlinear state and parameter estimation. Phys Rev E Stat Nonlin Soft Matter Phys. 2015 Nov; 92(5):052901. Ye J, Rey D, Kadakia N, Eldridge M, Morone UI, Rozdeba P, Abarbanel HD, Quinn JC. PMID: 26651756.
      View in: PubMed   Mentions: 7     Fields:    
    15. Basin structure of optimization based state and parameter estimation. Chaos. 2015 May; 25(5):053108. Schumann-Bischoff J, Parlitz U, Abarbanel HD, Kostuk M, Rey D, Eldridge M, Luther S. PMID: 26026320.
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    16. Silicon central pattern generators for cardiac diseases. J Physiol. 2015 Feb 15; 593(4):763-74. Nogaret A, O'Callaghan EL, Lataro RM, Salgado HC, Meliza CD, Duncan E, Abarbanel HD, Paton JF. PMID: 25433077; PMCID: PMC4398520.
      View in: PubMed   Mentions: 3     Fields:    Translation:HumansAnimals
    17. Using waveform information in nonlinear data assimilation. Phys Rev E Stat Nonlin Soft Matter Phys. 2014 Dec; 90(6):062916. Rey D, Eldridge M, Morone U, Abarbanel HD, Parlitz U, Schumann-Bischoff J. PMID: 25615173.
      View in: PubMed   Mentions: 2     Fields:    
    18. Estimating the biophysical properties of neurons with intracellular calcium dynamics. Phys Rev E Stat Nonlin Soft Matter Phys. 2014 Jun; 89(6):062714. Ye J, Rozdeba PJ, Morone UI, Daou A, Abarbanel HD. PMID: 25019821.
      View in: PubMed   Mentions: 3     Fields:    Translation:Cells
    19. Estimating parameters and predicting membrane voltages with conductance-based neuron models. Biol Cybern. 2014 Aug; 108(4):495-516. Meliza CD, Kostuk M, Huang H, Nogaret A, Margoliash D, Abarbanel HD. PMID: 24962080.
      View in: PubMed   Mentions: 27     Fields:    Translation:AnimalsCells
    20. Dynamical estimation of neuron and network properties III: network analysis using neuron spike times. Biol Cybern. 2014 Jun; 108(3):261-73. Knowlton C, Meliza CD, Margoliash D, Abarbanel HD. PMID: 24760370.
      View in: PubMed   Mentions:    Fields:    Translation:HumansAnimalsCells
    21. Dynamical estimation of neuron and network properties II: Path integral Monte Carlo methods. Biol Cybern. 2012 Mar; 106(3):155-67. Kostuk M, Toth BA, Meliza CD, Margoliash D, Abarbanel HD. PMID: 22526358.
      View in: PubMed   Mentions: 8     Fields:    Translation:Cells
    22. Dynamic state and parameter estimation applied to neuromorphic systems. Neural Comput. 2012 Jul; 24(7):1669-94. Neftci EO, Toth B, Indiveri G, Abarbanel HD. PMID: 22428591.
      View in: PubMed   Mentions: 4     Fields:    Translation:HumansAnimalsCells
    23. Dynamical estimation of neuron and network properties I: variational methods. Biol Cybern. 2011 Oct; 105(3-4):217-37. Toth BA, Kostuk M, Meliza CD, Margoliash D, Abarbanel HD. PMID: 21986979; PMCID: PMC5759962.
      View in: PubMed   Mentions: 16     Fields:    Translation:Cells
    24. Rate maintenance and resonance in the entorhinal cortex. Eur J Neurosci. 2010 Dec; 32(11):1930-9. Haas JS, Kreuz T, Torcini A, Politi A, Abarbanel HD. PMID: 21044179.
      View in: PubMed   Mentions: 2     Fields:    Translation:AnimalsCells
    25. Measuring multiple spike train synchrony. J Neurosci Methods. 2009 Oct 15; 183(2):287-99. Kreuz T, Chicharro D, Andrzejak RG, Haas JS, Abarbanel HD. PMID: 19591867.
      View in: PubMed   Mentions: 12     Fields:    Translation:AnimalsCells
    26. Parameter and state estimation of experimental chaotic systems using synchronization. Phys Rev E Stat Nonlin Soft Matter Phys. 2009 Jul; 80(1 Pt 2):016201. Quinn JC, Bryant PH, Creveling DR, Klein SR, Abarbanel HD. PMID: 19658786.
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    27. Brain stem feedback in a computational model of birdsong sequencing. J Neurophysiol. 2009 Sep; 102(3):1763-78. Gibb L, Gentner TQ, Abarbanel HD. PMID: 19553477; PMCID: PMC2746794.
      View in: PubMed   Mentions: 15     Fields:    Translation:AnimalsCells
    28. Inhibition and recurrent excitation in a computational model of sparse bursting in song nucleus HVC. J Neurophysiol. 2009 Sep; 102(3):1748-62. Gibb L, Gentner TQ, Abarbanel HD. PMID: 19515949; PMCID: PMC2746786.
      View in: PubMed   Mentions: 24     Fields:    Translation:AnimalsCells
    29. Chemosensor-driven artificial antennal lobe transient dynamics enable fast recognition and working memory. Neural Comput. 2009 Apr; 21(4):1018-37. Muezzinoglu MK, Huerta R, Abarbanel HD, Ryan MA, Rabinovich MI. PMID: 19018701.
      View in: PubMed   Mentions: 5     Fields:    Translation:AnimalsCells
    30. Temporal spike pattern learning. Phys Rev E Stat Nonlin Soft Matter Phys. 2008 Sep; 78(3 Pt 1):031918. Talathi SS, Abarbanel HD, Ditto WL. PMID: 18851076.
      View in: PubMed   Mentions: 2     Fields:    Translation:HumansAnimalsCells
    31. Estimation of parameters in nonlinear systems using balanced synchronization. Phys Rev E Stat Nonlin Soft Matter Phys. 2008 Jan; 77(1 Pt 2):016208. Abarbanel HD, Creveling DR, Jeanne JM. PMID: 18351927.
      View in: PubMed   Mentions: 8     Fields:    
    32. Estimating information rates with confidence intervals in neural spike trains. Neural Comput. 2007 Jul; 19(7):1683-719. Shlens J, Kennel MB, Abarbanel HD, Chichilnisky EJ. PMID: 17521276.
      View in: PubMed   Mentions: 12     Fields:    Translation:AnimalsCells
    33. Measuring spike train synchrony. J Neurosci Methods. 2007 Sep 15; 165(1):151-61. Kreuz T, Haas JS, Morelli A, Abarbanel HD, Politi A. PMID: 17628690.
      View in: PubMed   Mentions: 50     Fields:    Translation:AnimalsCells
    34. Relating a calcium indicator signal to the unperturbed calcium concentration time-course. Theor Biol Med Model. 2007 Feb 06; 4:7. Borst A, Abarbanel HD. PMID: 17284310; PMCID: PMC1800305.
      View in: PubMed   Mentions: 10     Fields:    Translation:HumansAnimalsCells
    35. Spike-timing-dependent plasticity of inhibitory synapses in the entorhinal cortex. J Neurophysiol. 2006 Dec; 96(6):3305-13. Haas JS, Nowotny T, Abarbanel HD. PMID: 16928795.
      View in: PubMed   Mentions: 68     Fields:    Translation:AnimalsCells
    36. Neural circuitry for recognizing interspike interval sequences. Phys Rev Lett. 2006 Apr 14; 96(14):148104. Abarbanel HD, Talathi SS. PMID: 16712127.
      View in: PubMed   Mentions: 5     Fields:    Translation:HumansAnimalsCells
    37. From crawling to cognition: analyzing the dynamical interactions among populations of neurons. Curr Opin Neurobiol. 2006 Apr; 16(2):135-44. Briggman KL, Abarbanel HD, Kristan WB. PMID: 16564165.
      View in: PubMed   Mentions: 14     Fields:    Translation:HumansAnimalsCells
    38. Self-organization in the olfactory system: one shot odor recognition in insects. Biol Cybern. 2005 Dec; 93(6):436-46. Nowotny T, Huerta R, Abarbanel HD, Rabinovich MI. PMID: 16320081.
      View in: PubMed   Mentions: 23     Fields:    Translation:AnimalsCells
    39. Synaptic plasticity with discrete state synapses. Phys Rev E Stat Nonlin Soft Matter Phys. 2005 Sep; 72(3 Pt 1):031914. Abarbanel HD, Talathi SS, Gibb L, Rabinovich MI. PMID: 16241489.
      View in: PubMed   Mentions: 7     Fields:    Translation:HumansAnimalsCells
    40. Estimating entropy rates with Bayesian confidence intervals. Neural Comput. 2005 Jul; 17(7):1531-76. Kennel MB, Shlens J, Abarbanel HD, Chichilnisky EJ. PMID: 15901407.
      View in: PubMed   Mentions: 23     Fields:    
    41. A network of electronic neural oscillators reproduces the dynamics of the periodically forced pyloric pacemaker group. IEEE Trans Biomed Eng. 2005 May; 52(5):792-8. Denker M, Szücs A, Pinto RD, Abarbanel HD, Selverston AI. PMID: 15887528.
      View in: PubMed   Mentions:    Fields:    Translation:AnimalsCells
    42. Optical imaging of neuronal populations during decision-making. Science. 2005 Feb 11; 307(5711):896-901. Briggman KL, Abarbanel HD, Kristan WB. PMID: 15705844.
      View in: PubMed   Mentions: 148     Fields:    Translation:AnimalsCells
    43. Dopamine modulation of spike dynamics in bursting neurons. Eur J Neurosci. 2005 Feb; 21(3):763-72. Szücs A, Abarbanel HD, Rabinovich MI, Selverston AI. PMID: 15733094.
      View in: PubMed   Mentions: 10     Fields:    Translation:AnimalsCells
    44. Dynamical model of birdsong maintenance and control. Phys Rev E Stat Nonlin Soft Matter Phys. 2004 Nov; 70(5 Pt 1):051911. Abarbanel HD, Talathi SS, Mindlin G, Rabinovich M, Gibb L. PMID: 15600660.
      View in: PubMed   Mentions: 4     Fields:    Translation:AnimalsCells
    45. Spike timing and synaptic plasticity in the premotor pathway of birdsong. Biol Cybern. 2004 Sep; 91(3):159-67. Abarbanel HD, Gibb L, Mindlin GB, Rabinovich MI, Talathi S. PMID: 15378372.
      View in: PubMed   Mentions: 4     Fields:    Translation:AnimalsCells
    46. Learning classification in the olfactory system of insects. Neural Comput. 2004 Aug; 16(8):1601-40. Huerta R, Nowotny T, García-Sanchez M, Abarbanel HD, Rabinovich MI. PMID: 15228747.
      View in: PubMed   Mentions: 34     Fields:    Translation:AnimalsCells
    47. Mapping neural architectures onto acoustic features of birdsong. J Neurophysiol. 2004 Jul; 92(1):96-110. Abarbanel HD, Gibb L, Mindlin GB, Talathi S. PMID: 15028750.
      View in: PubMed   Mentions: 7     Fields:    Translation:Animals
    48. Reliability and precision of neural spike timing: simulation of spectrally broadband synaptic inputs. Neuroscience. 2004; 126(4):1063-73. Szucs A, Vehovszky A, Molnár G, Pinto RD, Abarbanel HD. PMID: 15207339.
      View in: PubMed   Mentions: 7     Fields:    Translation:AnimalsCells
    49. Enhancement of synchronization in a hybrid neural circuit by spike-timing dependent plasticity. J Neurosci. 2003 Oct 29; 23(30):9776-85. Nowotny T, Zhigulin VP, Selverston AI, Abarbanel HD, Rabinovich MI. PMID: 14586005; PMCID: PMC6740898.
      View in: PubMed   Mentions: 26     Fields:    Translation:AnimalsCells
    50. Decoding temporal information through slow lateral excitation in the olfactory system of insects. J Comput Neurosci. 2003 Sep-Oct; 15(2):271-81. Nowotny T, Rabinovich MI, Huerta R, Abarbanel HD. PMID: 14512751.
      View in: PubMed   Mentions: 2     Fields:    Translation:AnimalsCells
    51. Biophysical model of synaptic plasticity dynamics. Biol Cybern. 2003 Sep; 89(3):214-26. Abarbanel HD, Gibb L, Huerta R, Rabinovich MI. PMID: 14504940.
      View in: PubMed   Mentions: 25     Fields:    Translation:AnimalsCells
    52. Spatial representation of temporal information through spike-timing-dependent plasticity. Phys Rev E Stat Nonlin Soft Matter Phys. 2003 Jul; 68(1 Pt 1):011908. Nowotny T, Rabinovich MI, Abarbanel HD. PMID: 12935177.
      View in: PubMed   Mentions: 7     Fields:    Translation:HumansAnimalsCells
    53. Dynamical synaptic plasticity: a model and connection to some experiments. Biol Cybern. 2003 Mar; 88(3):229-35. Whitehead A, Rabinovich MI, Huerta R, Zhigulin VP, Abarbanel HD. PMID: 12647230.
      View in: PubMed   Mentions: 2     Fields:    Translation:AnimalsCells
    54. Synaptic modulation of the interspike interval signatures of bursting pyloric neurons. J Neurophysiol. 2003 Mar; 89(3):1363-77. Szucs A, Pinto RD, Rabinovich MI, Abarbanel HD, Selverston AI. PMID: 12626616.
      View in: PubMed   Mentions: 19     Fields:    Translation:AnimalsCells
    55. Robustness and enhancement of neural synchronization by activity-dependent coupling. Phys Rev E Stat Nonlin Soft Matter Phys. 2003 Feb; 67(2 Pt 1):021901. Zhigulin VP, Rabinovich MI, Huerta R, Abarbanel HD. PMID: 12636709.
      View in: PubMed   Mentions: 13     Fields:    Translation:AnimalsCells
    56. Using distributed nonlinear dynamics for public key encryption. Phys Rev Lett. 2003 Jan 31; 90(4):047903. Tenny R, Tsimring LS, Larson L, Abarbanel HD. PMID: 12570462.
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    57. Dynamical model of long-term synaptic plasticity. Proc Natl Acad Sci U S A. 2002 Jul 23; 99(15):10132-7. Abarbanel HD, Huerta R, Rabinovich MI. PMID: 12114531; PMCID: PMC126636.
      View in: PubMed   Mentions: 28     Fields:    Translation:Cells
    58. Extended dynamic clamp: controlling up to four neurons using a single desktop computer and interface. J Neurosci Methods. 2001 Jul 15; 108(1):39-48. Pinto RD, Elson RC, Szücs A, Rabinovich MI, Selverston AI, Abarbanel HD. PMID: 11459616.
      View in: PubMed   Mentions: 36     Fields:    Translation:AnimalsCells
    59. Model of transient oscillatory synchronization in the locust antennal lobe. Neuron. 2001 May; 30(2):553-67. Bazhenov M, Stopfer M, Rabinovich M, Huerta R, Abarbanel HD, Sejnowski TJ, Laurent G. PMID: 11395014; PMCID: PMC2900257.
      View in: PubMed   Mentions: 78     Fields:    Translation:AnimalsCells
    60. Model of cellular and network mechanisms for odor-evoked temporal patterning in the locust antennal lobe. Neuron. 2001 May; 30(2):569-81. Bazhenov M, Stopfer M, Rabinovich M, Abarbanel HD, Sejnowski TJ, Laurent G. PMID: 11395015; PMCID: PMC2907737.
      View in: PubMed   Mentions: 60     Fields:    Translation:AnimalsCells
    61. Nonlinear behavior of sinusoidally forced pyloric pacemaker neurons. J Neurophysiol. 2001 Apr; 85(4):1623-38. Szücs A, Elson RC, Rabinovich MI, Abarbanel HD, Selverston AI. PMID: 11287486.
      View in: PubMed   Mentions: 11     Fields:    Translation:AnimalsCells
    62. Odor encoding as an active, dynamical process: experiments, computation, and theory. Annu Rev Neurosci. 2001; 24:263-97. Laurent G, Stopfer M, Friedrich RW, Rabinovich MI, Volkovskii A, Abarbanel HD. PMID: 11283312.
      View in: PubMed   Mentions: 135     Fields:    Translation:HumansAnimals
    63. Synchronization of chaotic oscillations in doped fiber ring lasers. Phys Rev E Stat Nonlin Soft Matter Phys. 2001 Jan; 63(1 Pt 2):016215. Lewis CT, Abarbanel HD, Kennel MB, Buhl M, Illing L. PMID: 11304343.
      View in: PubMed   Mentions: 1     Fields:    
    64. Information transmission and recovery in neural communications channels. Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics. 2000 Nov; 62(5 Pt B):7111-22. Eguia MC, Rabinovich MI, Abarbanel HD. PMID: 11102068.
      View in: PubMed   Mentions: 8     Fields:    Translation:Cells
    65. Dynamical coding of sensory information with competitive networks. J Physiol Paris. 2000 Sep-Dec; 94(5-6):465-71. Rabinovich MI, Huerta R, Volkovskii A, Abarbanel HD, Stopfer M, Laurent G. PMID: 11165913.
      View in: PubMed   Mentions: 15     Fields:    Translation:AnimalsCells
    66. Reliable circuits from irregular neurons: a dynamical approach to understanding central pattern generators. J Physiol Paris. 2000 Sep-Dec; 94(5-6):357-74. Selverston AI, Rabinovich MI, Abarbanel HD, Elson R, Szücs A, Pinto RD, Huerta R, Varona P. PMID: 11165906.
      View in: PubMed   Mentions: 18     Fields:    Translation:AnimalsCells
    67. Synchronous behavior of two coupled electronic neurons. Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics. 2000 Aug; 62(2 Pt B):2644-56. Pinto RD, Varona P, Volkovskii AR, Szücs A, Abarbanel HD, Rabinovich MI. PMID: 11088744.
      View in: PubMed   Mentions: 11     Fields:    Translation:AnimalsCells
    68. Modeling observed chaotic oscillations in bursting neurons: the role of calcium dynamics and IP3. Biol Cybern. 2000 Jun; 82(6):517-27. Falcke M, Huerta R, Rabinovich MI, Abarbanel HD, Elson RC, Selverston AI. PMID: 10879435.
      View in: PubMed   Mentions: 15     Fields:    Translation:HumansAnimalsCells
    69. Interacting biological and electronic neurons generate realistic oscillatory rhythms. Neuroreport. 2000 Feb 28; 11(3):563-9. Szucs A, Varona P, Volkovskii AR, Abarbanel HD, Rabinovich MI, Selverston AI. PMID: 10718315.
      View in: PubMed   Mentions: 9     Fields:    Translation:AnimalsCells
    70. Dynamic control of irregular bursting in an identified neuron of an oscillatory circuit. J Neurophysiol. 1999 Jul; 82(1):115-22. Elson RC, Huerta R, Abarbanel HD, Rabinovich MI, Selverston AI. PMID: 10400940.
      View in: PubMed   Mentions: 16     Fields:    Translation:AnimalsCells
    71. Basic principles for generating motor output in the stomatogastric ganglion. Ann N Y Acad Sci. 1998 Nov 16; 860:35-50. Selverston A, Elson R, Rabinovich M, Huerta R, Abarbanel H. PMID: 9928300.
      View in: PubMed   Mentions: 13     Fields:    Translation:AnimalsCells
    72. The role of chaos in neural systems. Neuroscience. 1998 Nov; 87(1):5-14. Rabinovich MI, Abarbanel HD. PMID: 9722138.
      View in: PubMed   Mentions: 29     Fields:    Translation:AnimalsCells
    73. Nonlinear analysis of epileptic activity in rabbit neocortex. Biol Cybern. 1998 Jan; 78(1):37-44. Sarnthein J, Abarbanel HD, Pockberger H. PMID: 9485585.
      View in: PubMed   Mentions: 5     Fields:    Translation:Animals
    74. Synchronized action of synaptically coupled chaotic model neurons. Neural Comput. 1996 Nov 15; 8(8):1567-602. Abarbanel HD, Huerta R, Rabinovich MI, Rulkov NF, Rowat PF, Selverston AI. PMID: 8888609.
      View in: PubMed   Mentions: 13     Fields:    Translation:AnimalsCells
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