Shamim Nemati
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Title(s) | Assistant Professor, Medicine |
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School | Vc-health Sciences-schools |
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Address | 9500 Gilman Drive # La Jolla CA 92093
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vCard | Download vCard |
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Biography Harvard University, Cambridge, MA | Postdoctoral Training | 12/2014 | Machine Learning | Massachusetts Institute of Technology, Cambridge, MA | Ph.D. | 12/2012 | Electrical Engineering & Computer Science | University of Oklahoma, Norman, OK | M.S. | 05/2007 | Applied Mathematics & Signal Processing | University of Oklahoma, Norman, OK | B.A. | 07/2005 | Mathematics |
James S. McDonnell Foundation | 2013
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| 2014 | Postdoctoral Fellowship in Complex Systems |
Research ORNG Applications Bibliographic
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Development and Prospective Validation of a Deep Learning Algorithm for Predicting Need for Mechanical Ventilation. Chest. 2020 Dec 17.
Shashikumar SP, Wardi G, Paul P, Carlile M, Brenner LN, Hibbert KA, North CM, Mukerji SS, Robbins GK, Shao YP, Westover MB, Nemati S, Malhotra A. PMID: 33345948.
View in: PubMed Mentions: Fields:
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Classifying Major Depressive Disorder and Response to Deep Brain Stimulation Over Time by Analyzing Facial Expressions. IEEE Trans Biomed Eng. 2020 Jul 20; PP.
Jiang Z, Harati S, Crowell A, Mayberg H, Nemati S, Clifford G. PMID: 32746065.
View in: PubMed Mentions: Fields:
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Predicting Mortality in Critical Care Patients with Fungemia Using Structured and Unstructured Data. Annu Int Conf IEEE Eng Med Biol Soc. 2020 07; 2020:5459-5463.
Baxter SL, Klie AR, Saseendrakumar BR, Ye GY, Hogarth M, Nemati S. PMID: 33019215.
View in: PubMed Mentions:
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AIDEx - An Open-source Platform for Real-Time Forecasting Sepsis and A Case Study on Taking ML Algorithms to Production. Annu Int Conf IEEE Eng Med Biol Soc. 2020 07; 2020:5610-5614.
Amrollahi F, Shashikumar SP, Kathiravelu P, Sharma A, Nemati S. PMID: 33019249.
View in: PubMed Mentions:
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Development and Prospective Validation of a Transparent Deep Learning Algorithm for Predicting Need for Mechanical Ventilation. medRxiv. 2020 Jun 03.
Shashikumar SP, Wardi G, Paul P, Carlile M, Brenner LN, Hibbert KA, North CM, Mukerji S, Robbins G, Shao YP, Malhotra A, Westover B, Nemati S. PMID: 32577682.
View in: PubMed Mentions:
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Detecting heart failure using wearables: a pilot study. Physiol Meas. 2020 05 04; 41(4):044001.
Shah AJ, Isakadze N, Levantsevych O, Vest A, Clifford G, Nemati S. PMID: 32163936.
View in: PubMed Mentions: Fields:
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Assessing Contribution of Higher Order Clinical Risk Factors to Prediction of Outcome in Aneurysmal Subarachnoid Hemorrhage Patients. AMIA Annu Symp Proc. 2019; 2019:848-856.
Tabaie A, Nemati S, Allen JW, Chung C, Queiroga F, Kuk WJ, Prater AB. PMID: 32308881.
View in: PubMed Mentions: Fields: Translation: Humans
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Early Prediction of Sepsis From Clinical Data: The PhysioNet/Computing in Cardiology Challenge 2019. Crit Care Med. 2020 02; 48(2):210-217.
Reyna MA, Josef CS, Jeter R, Shashikumar SP, Westover MB, Nemati S, Clifford GD, Sharma A. PMID: 31939789.
View in: PubMed Mentions: 2 Fields: Translation: Humans
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Addressing the Credit Assignment Problem in Treatment Outcome Prediction using Temporal Difference Learning. Pac Symp Biocomput. 2020; 25:43-54.
Harati S, Crowell A, Mayberg H, Nemati S. PMID: 31797585.
View in: PubMed Mentions: 1 Fields:
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Classifying Depression Severity in Recovery From Major Depressive Disorder via Dynamic Facial Features. IEEE J Biomed Health Inform. 2020 03; 24(3):815-824.
Harati S, Crowell A, Huang Y, Mayberg H, Nemati S. PMID: 31352356.
View in: PubMed Mentions: 2 Fields:
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Ventricular ectopic beat detection using a wavelet transform and a convolutional neural network. Physiol Meas. 2019 06 04; 40(5):055002.
Li Q, Liu C, Li Q, Shashikumar SP, Nemati S, Shen Z, Clifford GD. PMID: 30970338.
View in: PubMed Mentions: Fields: Translation: Humans
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Deep learning in the cross-time frequency domain for sleep staging from a single-lead electrocardiogram. Physiol Meas. 2018 12 21; 39(12):124005.
Li Q, Li Q, Liu C, Shashikumar SP, Nemati S, Clifford GD. PMID: 30524025.
View in: PubMed Mentions: 4 Fields: Translation: Humans
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Multiscale network dynamics between heart rate and locomotor activity are altered in schizophrenia. Physiol Meas. 2018 10 30; 39(11):115001.
Reinertsen E, Shashikumar SP, Shah AJ, Nemati S, Clifford GD. PMID: 30222594.
View in: PubMed Mentions: 2 Fields: Translation: Humans
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An open source benchmarked toolbox for cardiovascular waveform and interval analysis. Physiol Meas. 2018 10 11; 39(10):105004.
Vest AN, Da Poian G, Li Q, Liu C, Nemati S, Shah AJ, Clifford GD. PMID: 30199376.
View in: PubMed Mentions: 9 Fields: Translation: Humans
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A comparison of entropy approaches for AF discrimination. Physiol Meas. 2018 07 06; 39(7):074002.
Liu C, Oster J, Reinertsen E, Li Q, Zhao L, Nemati S, Clifford GD. PMID: 29897343.
View in: PubMed Mentions: 4 Fields: Translation: Humans
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It Is About Time: Extinguishing the Fire of Acute Kidney Injury. Crit Care Med. 2018 07; 46(7):1187-1189.
Josef CS, Nemati S. PMID: 29912099.
View in: PubMed Mentions: Fields: Translation: Humans
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Depression Severity Classification from Speech Emotion. Annu Int Conf IEEE Eng Med Biol Soc. 2018 Jul; 2018:5763-5766.
Harati S, Crowell A, Mayberg H, Nemati S. PMID: 30441645.
View in: PubMed Mentions:
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A Deep Deterministic Policy Gradient Approach to Medication Dosing and Surveillance in the ICU. Annu Int Conf IEEE Eng Med Biol Soc. 2018 Jul; 2018:4927-4931.
Lin R, Stanley MD, Ghassemi MM, Nemati S. PMID: 30441448.
View in: PubMed Mentions:
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A FHIR-Enabled Streaming Sepsis Prediction System for ICUs. Annu Int Conf IEEE Eng Med Biol Soc. 2018 Jul; 2018:4093-4096.
Henry JR, Lynch D, Mals J, Shashikumar SP, Holder A, Sharma A, Nemati S. PMID: 30441256.
View in: PubMed Mentions:
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How is the Doctor Feeling? ICU Provider Sentiment is Associated with Diagnostic Imaging Utilization. Annu Int Conf IEEE Eng Med Biol Soc. 2018 Jul; 2018:4058-4064.
Ghassemi MM, Al-Hanai T, Raffa JD, Mark RG, Nemati S, Chokshi FH. PMID: 30441248.
View in: PubMed Mentions:
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Doubly-Robust Estimation of Effect of Imaging Resource Utilization on Discharge Decisions in Emergency Departments. Annu Int Conf IEEE Eng Med Biol Soc. 2018 Jul; 2018:3256-3259.
Tabaie A, Chokshi FH, Holder AL, Nemati SN. PMID: 30441086.
View in: PubMed Mentions:
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Looking Into the Seeds of Time to Say Which Fevers Will Grow and Which Will Not. Crit Care Med. 2018 04; 46(4):651-653.
Nemati S. PMID: 29538119.
View in: PubMed Mentions: Fields: Translation: Humans
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An Interpretable Machine Learning Model for Accurate Prediction of Sepsis in the ICU. Crit Care Med. 2018 04; 46(4):547-553.
Nemati S, Holder A, Razmi F, Stanley MD, Clifford GD, Buchman TG. PMID: 29286945.
View in: PubMed Mentions: 48 Fields: Translation: Humans
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Serial Daily Organ Failure Assessment Beyond ICU Day 5 Does Not Independently Add Precision to ICU Risk-of-Death Prediction. Crit Care Med. 2017 Dec; 45(12):2014-2022.
Holder AL, Overton E, Lyu P, Kempker JA, Nemati S, Razmi F, Martin GS, Buchman TG, Murphy DJ. PMID: 28906286.
View in: PubMed Mentions: 2 Fields: Translation: Humans
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Multiscale network representation of physiological time series for early prediction of sepsis. Physiol Meas. 2017 Nov 30; 38(12):2235-2248.
Shashikumar SP, Li Q, Clifford GD, Nemati S. PMID: 29091053.
View in: PubMed Mentions: 3 Fields: Translation: Humans
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Early sepsis detection in critical care patients using multiscale blood pressure and heart rate dynamics. J Electrocardiol. 2017 Nov - Dec; 50(6):739-743.
Shashikumar SP, Stanley MD, Sadiq I, Li Q, Holder A, Clifford GD, Nemati S. PMID: 28916175.
View in: PubMed Mentions: 10 Fields: Translation: Humans
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Benchmarking heart rate variability toolboxes. J Electrocardiol. 2017 Nov - Dec; 50(6):744-747.
Vest AN, Li Q, Liu C, Nemati S, Shah A, Clifford GD. PMID: 28965961.
View in: PubMed Mentions: 1 Fields: Translation: Humans
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Heart rate-based window segmentation improves accuracy of classifying posttraumatic stress disorder using heart rate variability measures. Physiol Meas. 2017 Jun; 38(6):1061-1076.
Reinertsen E, Nemati S, Vest AN, Vaccarino V, Lampert R, Shah AJ, Clifford GD. PMID: 28489609.
View in: PubMed Mentions: 3 Fields: Translation: Humans
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Resonance as the Mechanism of Daytime Periodic Breathing in Patients with Heart Failure. Am J Respir Crit Care Med. 2017 01 15; 195(2):237-246.
Sands SA, Mebrate Y, Edwards BA, Nemati S, Manisty CH, Desai AS, Wellman A, Willson K, Francis DP, Butler JP, Malhotra A. PMID: 27559818.
View in: PubMed Mentions: 5 Fields: Translation: Humans
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THE TRAINING OF NEXT GENERATION DATA SCIENTISTS IN BIOMEDICINE. Pac Symp Biocomput. 2017; 22:640-645.
Garmire LX, Gliske S, Nguyen QC, Chen JH, Nemati S, VAN Horn JD, Moore JH, Shreffler C, Dunn M. PMID: 27897014.
View in: PubMed Mentions: 2 Fields: Translation: HumansPHPublic Health
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A Model-Based Machine Learning Approach to Probing Autonomic Regulation From Nonstationary Vital-Sign Time Series. IEEE J Biomed Health Inform. 2018 01; 22(1):56-66.
Lehman LH, Mark RG, Nemati S. PMID: 27959829.
View in: PubMed Mentions: 3 Fields: Translation: Humans
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Monitoring and detecting atrial fibrillation using wearable technology. Annu Int Conf IEEE Eng Med Biol Soc. 2016 Aug; 2016:3394-3397.
Nemati S, Ghassemi MM, Ambai V, Isakadze N, Levantsevych O, Shah A, Clifford GD. PMID: 28269032.
View in: PubMed Mentions:
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Optimal medication dosing from suboptimal clinical examples: a deep reinforcement learning approach. Annu Int Conf IEEE Eng Med Biol Soc. 2016 Aug; 2016:2978-2981.
Nemati S, Ghassemi MM, Clifford GD. PMID: 28268938.
View in: PubMed Mentions:
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Discriminating clinical phases of recovery from major depressive disorder using the dynamics of facial expression. Annu Int Conf IEEE Eng Med Biol Soc. 2016 Aug; 2016:2254-2257.
Harati S, Crowell A, Mayberg H, Nemati S. PMID: 28268777.
View in: PubMed Mentions:
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A Visualization of Evolving Clinical Sentiment Using Vector Representations of Clinical Notes. Comput Cardiol (2010). 2015 Sep; 2015:629-632.
Ghassemi MM, Mark RG, Nemati S. PMID: 27774487.
View in: PubMed Mentions:
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Patient Prognosis from Vital Sign Time Series: Combining Convolutional Neural Networks with a Dynamical Systems Approach. Comput Cardiol (2010). 2015; 42:1069-1072.
Lehman LW, Ghassemi M, Snoek J, Nemati S. PMID: 27790623.
View in: PubMed Mentions:
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Hemodynamic Monitoring Using Switching Autoregressive Dynamics of Multivariate Vital Sign Time Series. Comput Cardiol (2010). 2015; 42:1065-1068.
Lehman LH, Nemati S, Mark RG. PMID: 27774489.
View in: PubMed Mentions:
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Machine Learning and Decision Support in Critical Care. Proc IEEE Inst Electr Electron Eng. 2016 Feb; 104(2):444-466.
Johnson AE, Ghassemi MM, Nemati S, Niehaus KE, Clifton DA, Clifford GD. PMID: 27765959.
View in: PubMed Mentions:
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Semisupervised ECG Ventricular Beat Classification With Novelty Detection Based on Switching Kalman Filters. IEEE Trans Biomed Eng. 2015 Sep; 62(9):2125-34.
Oster J, Behar J, Sayadi O, Nemati S, Johnson AE, Clifford GD. PMID: 25680203.
View in: PubMed Mentions: 9 Fields: Translation: Humans
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Accumulated deep sleep is a powerful predictor of LH pulse onset in pubertal children. J Clin Endocrinol Metab. 2015 Mar; 100(3):1062-70.
Shaw ND, Butler JP, Nemati S, Kangarloo T, Ghassemi M, Malhotra A, Hall JE. PMID: 25490277.
View in: PubMed Mentions: 7 Fields: Translation: Humans
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Quantifying the ventilatory control contribution to sleep apnoea using polysomnography. Eur Respir J. 2015 Feb; 45(2):408-18.
Terrill PI, Edwards BA, Nemati S, Butler JP, Owens RL, Eckert DJ, White DP, Malhotra A, Wellman A, Sands SA. PMID: 25323235.
View in: PubMed Mentions: 50 Fields: Translation: Humans
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Model-based estimation of loop gain using spontaneous breathing: a validation study. Respir Physiol Neurobiol. 2014 Sep 15; 201:84-92.
Gederi E, Nemati S, Edwards BA, Clifford GD, Malhotra A, Wellman A. PMID: 25038522.
View in: PubMed Mentions: 5 Fields: Translation: Humans
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A physiological time series dynamics-based approach to patient monitoring and outcome prediction. IEEE J Biomed Health Inform. 2015 May; 19(3):1068-76.
Lehman LW, Adams RP, Mayaud L, Moody GB, Malhotra A, Mark RG, Nemati S. PMID: 25014976.
View in: PubMed Mentions: 23 Fields: Translation: Humans
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Respiration and heart rate complexity: effects of age and gender assessed by band-limited transfer entropy. Respir Physiol Neurobiol. 2013 Oct 01; 189(1):27-33.
Nemati S, Edwards BA, Lee J, Pittman-Polletta B, Butler JP, Malhotra A. PMID: 23811194.
View in: PubMed Mentions: 12 Fields: Translation: Humans
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A simplified method for determining phenotypic traits in patients with obstructive sleep apnea. J Appl Physiol (1985). 2013 Apr; 114(7):911-22.
Wellman A, Edwards BA, Sands SA, Owens RL, Nemati S, Butler J, Passaglia CL, Jackson AC, Malhotra A, White DP. PMID: 23349453.
View in: PubMed Mentions: 61 Fields: Translation: Humans
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Tracking progression of patient state of health in critical care using inferred shared dynamics in physiological time series. Annu Int Conf IEEE Eng Med Biol Soc. 2013; 2013:7072-5.
Lehman LW, Nemati S, Adams RP, Moody G, Malhotra A, Mark RG. PMID: 24111374.
View in: PubMed Mentions:
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Learning outcome-discriminative dynamics in multivariate physiological cohort time series. Annu Int Conf IEEE Eng Med Biol Soc. 2013; 2013:7104-7.
Nemati S, Lehman LW, Adams RP. PMID: 24111382.
View in: PubMed Mentions:
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Transfer entropy estimation and directional coupling change detection in biomedical time series. Biomed Eng Online. 2012 Apr 13; 11:19.
Lee J, Nemati S, Silva I, Edwards BA, Butler JP, Malhotra A. PMID: 22500692.
View in: PubMed Mentions: 18 Fields:
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Discovering shared cardiovascular dynamics within a patient cohort. Annu Int Conf IEEE Eng Med Biol Soc. 2012; 2012:6526-9.
Nemati S, Lehman LW, Adams RP, Malhotra A. PMID: 23367424.
View in: PubMed Mentions:
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Discovering shared dynamics in physiological signals: application to patient monitoring in ICU. Annu Int Conf IEEE Eng Med Biol Soc. 2012; 2012:5939-42.
Lehman LW, Nemati S, Adams RP, Mark RG. PMID: 23367281.
View in: PubMed Mentions:
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Model-based characterization of ventilatory stability using spontaneous breathing. J Appl Physiol (1985). 2011 Jul; 111(1):55-67.
Nemati S, Edwards BA, Sands SA, Berger PJ, Wellman A, Verghese GC, Malhotra A, Butler JP. PMID: 21474696.
View in: PubMed Mentions: 13 Fields: Translation: AnimalsCells
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T-wave alternans patterns during sleep in healthy, cardiac disease, and sleep apnea patients. J Electrocardiol. 2011 Mar-Apr; 44(2):126-30.
Nemati S, Malhotra A, Clifford GD. PMID: 21163493.
View in: PubMed Mentions: 3 Fields: Translation: Humans
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A nonparametric surrogate-based test of significance for T-wave alternans detection. IEEE Trans Biomed Eng. 2011 May; 58(5):1356-64.
Nemati S, Abdala O, Monasterio V, Yim-Yeh S, Malhotra A, Clifford GD. PMID: 20409986.
View in: PubMed Mentions: 4 Fields: Translation: Humans
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An artificial vector model for generating abnormal electrocardiographic rhythms. Physiol Meas. 2010 May; 31(5):595-609.
Clifford GD, Nemati S, Sameni R. PMID: 20308774.
View in: PubMed Mentions: 3 Fields: Translation: Humans
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Data Fusion for Improved Respiration Rate Estimation. EURASIP J Adv Signal Process. 2010; 2010:926305.
Nemati S, Malhotra A, Clifford GD. PMID: 20806056.
View in: PubMed Mentions:
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Biomimetic brain machine interfaces for the control of movement. J Neurosci. 2007 Oct 31; 27(44):11842-6.
Fagg AH, Hatsopoulos NG, de Lafuente V, Moxon KA, Nemati S, Rebesco JM, Romo R, Solla SA, Reimer J, Tkach D, Pohlmeyer EA, Miller LE. PMID: 17978021.
View in: PubMed Mentions: 29 Fields: Translation: HumansAnimals
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Year | Publications |
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2007 | 1 | 2010 | 4 | 2011 | 1 | 2012 | 3 | 2013 | 4 | 2014 | 4 | 2015 | 1 | 2016 | 8 | 2017 | 7 | 2018 | 12 | 2019 | 2 | 2020 | 9 |
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Fields are based on how the National Library of Medicine (NLM) classifies the publications' journals and might not represent the specific topics of the publications.
Note that an individual publication can be assigned to more than one field. As a result, the publication counts in this graph might add up to more than the number of publications the person has written.
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This graph shows the number and percent of publications by field.
Fields are based on how the National Library of Medicine (NLM) classifies the publications' journals and might not represent the specific topics of the publications.
Note that an individual publication can be assigned to more than one field. As a result, the publication counts in this graph might add up to more than the number of publications the person has written.
To see the data as text, click here.
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