Pengtao Xie

Home
About
Help/FAQs
Search Options
- UC Davis
- UCI
- UCLA
- UCSD
- UCSF
- All UC Health
- USC
- All
- Find People
- Find Everything

Title(s)	Associate Professor, Electrical and Computer Engineering
School	Vc-academic Affairs
Address	9500 Gilman Drive # La Jolla CA 92093
vCard	Download vCard

Bibliographic

publications

Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.

Altmetrics Details

PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.

Protocol for tri-modal pretraining and downstream fine-tuning of protein representations using ProteinAligner. STAR Protoc. 2026 Oct 01; 7(4):104862. Guo H, Zhang L, Schaffer L, Ko YS, Singh D, Rahmani H, Grotjahn D, Villa E, Gilson M, Wang W, Ideker T, Xing E, Xie P. PMID: 42821378.

View in: PubMed Mentions:
A tri-modal contrastive learning framework for protein representation learning. Cell Rep Methods. 2026 May 18; 6(5):101407. Zhang L, Guo H, Schaffer L, Ko YS, Singh D, Rahmani H, Grotjahn D, Villa E, Gilson M, Wang W, Ideker T, Xing E, Xie P. PMID: 41990738; PMCID: PMC13198128.

View in: PubMed Mentions: Fields:
Cel Cell Biology Mol Molecular Biology
Translation:Cells
scLong: a billion-parameter foundation model for capturing long-range gene context in single-cell transcriptomics. Nat Commun. 2026 Feb 05; 17(1). Bai D, Mo S, Zhang R, Luo Y, Gao J, Yang JP, Wu Q, Rahmani H, Amariuta T, Grotjahn D, Zhong S, Lewis N, Wang W, Ideker T, Xie P, Xing E. PMID: 41639087; PMCID: PMC12982784.

View in: PubMed Mentions: 1 Fields:
Bio Biology Sci Science
Translation:Humans Cells
AI-Driven Tacrolimus Dosing in Transplant Care: Cohort Study. JMIR AI. 2025 Sep 02; 4:e67302. Huo M, Perez S, Awdishu L, Kerr JS, Xie P, Khan A, Mekeel K, Nemati S. PMID: 40893105; PMCID: PMC12404564.

View in: PubMed Mentions: 1
Generative AI enables medical image segmentation in ultra low-data regimes. Nat Commun. 2025 Jul 14; 16(1):6486. Zhang L, Jindal B, Alaa A, Weinreb R, Wilson D, Segal E, Zou J, Xie P. PMID: 40659619; PMCID: PMC12260076.

View in: PubMed Mentions: 5 Fields:
Bio Biology Sci Science
Translation:Humans
Transformer Architecture Search for Improving Out-of-Domain Generalization in Machine Translation. Transact Mach Learn Res. 2024 Dec; 2024. He Y, Zhang R, Somayajula SA, Xie P. PMID: 40822983; PMCID: PMC12356094.

View in: PubMed Mentions:
Detection of glaucoma progression on longitudinal series of en-face macular optical coherence tomography angiography images with a deep learning model. Br J Ophthalmol. 2024 11 22; 108(12):1688-1693. Mohammadzadeh V, Liang Y, Moghimi S, Xie P, Nishida T, Mahmoudinezhad G, Eslani M, Walker E, Kamalipour A, Micheletti E, Wu JH, Christopher M, Zangwill LM, Javidi T, Weinreb RN. PMID: 39117359; PMCID: PMC11585450.

View in: PubMed Mentions: 3 Fields:
Oph Ophthalmology
Translation:Humans Cells
Diagnosing Solid Lesions in the Pancreas With Multimodal Artificial Intelligence: A Randomized Crossover Trial. JAMA Netw Open. 2024 07 01; 7(7):e2422454. Cui H, Zhao Y, Xiong S, Feng Y, Li P, Lv Y, Chen Q, Wang R, Xie P, Luo Z, Cheng S, Wang W, Li X, Xiong D, Cao X, Bai S, Yang A, Cheng B. PMID: 39028670; PMCID: PMC11259905.

View in: PubMed Mentions:
Improving image classification of gastrointestinal endoscopy using curriculum self-supervised learning. Sci Rep. 2024 03 13; 14(1):6100. Guo H, Somayajula SA, Hosseini R, Xie P. PMID: 38480815; PMCID: PMC10937990.

View in: PubMed Mentions: 3 Fields:
Sci Science
Translation:Humans
Improving long COVID-related text classification: a novel end-to-end domain-adaptive paraphrasing framework. Sci Rep. 2024 01 02; 14(1):85. Somayajula SA, Litake O, Liang Y, Hosseini R, Nemati S, Wilson DO, Weinreb RN, Malhotra A, Xie P. PMID: 38168099; PMCID: PMC10761882.

View in: PubMed Mentions: Fields:
Sci Science
Translation:Humans PHPublic Health
Interpretable unsupervised learning enables accurate clustering with high-throughput imaging flow cytometry. Sci Rep. 2023 11 23; 13(1):20533. Zhang Z, Chen X, Tang R, Zhu Y, Guo H, Qu Y, Xie P, Lian IY, Wang Y, Lo YH. PMID: 37996496; PMCID: PMC10667244.

View in: PubMed Mentions: 3 Fields:
Sci Science
Translation:Humans
Improve the performance of CT-based pneumonia classification via source data reweighting. Sci Rep. 2023 06 09; 13(1):9401. Xie P, Zhao X, He X. PMID: 37296239; PMCID: PMC10251339.

View in: PubMed Mentions: 2 Fields:
Sci Science
Translation:Humans
Assessment of Motor Dysfunction with Virtual Reality in Patients Undergoing [123I]FP-CIT SPECT/CT Brain Imaging. Tomography. 2021 03 26; 7(2):95-106. Vu JP, Yamin G, Reyes Z, Shin A, Young A, Litvan I, Xie P, Obrzut S. PMID: 33810475; PMCID: PMC8103274.

View in: PubMed Mentions: 2 Fields:
Dia Diagnostic Imaging
Translation:Humans