Matthew Daugherty

Title(s)Associate Professor, Molecular Biology
SchoolVc-academic Affairs
Address9500 Gilman Drive #
La Jolla CA 92093
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    Collapse Research 
    Collapse Research Activities and Funding
    Pathogen-driven evolution of innate antiviral defense mechanisms
    NIH R35GM133633Aug 1, 2019 - Jun 30, 2024
    Role: Principal Investigator
    Consequences of IFIT Gene Evolution on Species-Specific Antiviral Immunity
    NIH K22AI119017May 12, 2016 - Apr 30, 2018
    Role: Principal Investigator

    Collapse Bibliographic 
    Collapse Publications
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Structure of LRRK1 and mechanisms of autoinhibition and activation. Nat Struct Mol Biol. 2023 Oct 19. Reimer JM, Dickey AM, Lin YX, Abrisch RG, Mathea S, Chatterjee D, Fay EJ, Knapp S, Daugherty MD, Reck-Peterson SL, Leschziner AE. PMID: 37857821.
      View in: PubMed   Mentions:    Fields:    
    2. Progression of Xylella fastidiosa Infection in Grapevines Under Field Conditions. Phytopathology. 2023 Aug; 113(8):1465-1473. Kahn AK, Sicard A, Cooper ML, Daugherty MP, Donegan MA, Almeida RPP. PMID: 37080548.
      View in: PubMed   Mentions:    Fields:    
    3. Acquired stress resilience through bacteria-to-nematode horizontal gene transfer. bioRxiv. 2023 Aug 21. Pandey T, Kalluraya C, Wang B, Xu T, Huang X, Guang S, Daugherty MD, Ma DK. PMID: 37662235; PMCID: PMC10473587.
      View in: PubMed   Mentions:
    4. Reply to Redmond and McLysaght: Uncertainty in the origin of amphioxus IRBP homologs. Proc Natl Acad Sci U S A. 2023 Aug 22; 120(34):e2310867120. Kalluraya CA, Weitzel AJ, Tsu BV, Daugherty MD. PMID: 37579166; PMCID: PMC10450401.
      View in: PubMed   Mentions:    Fields:    
    5. Tripping the wire: sensing of viral protease activity by CARD8 and NLRP1 inflammasomes. Curr Opin Immunol. 2023 08; 83:102354. Castro LK, Daugherty MD. PMID: 37311351; PMCID: PMC10528193.
      View in: PubMed   Mentions: 2     Fields:    Translation:Humans
    6. Host-specific sensing of coronaviruses and picornaviruses by the CARD8 inflammasome. PLoS Biol. 2023 Jun; 21(6):e3002144. Tsu BV, Agarwal R, Gokhale NS, Kulsuptrakul J, Ryan AP, Fay EJ, Castro LK, Beierschmitt C, Yap C, Turcotte EA, Delgado-Rodriguez SE, Vance RE, Hyde JL, Savan R, Mitchell PS, Daugherty MD. PMID: 37289745; PMCID: PMC10249858.
      View in: PubMed   Mentions: 5     Fields:    Translation:HumansCells
    7. Recurrent Loss of Macrodomain Activity in Host Immunity and Viral Proteins. Pathogens. 2023 May 03; 12(5). Delgado-Rodriguez SE, Ryan AP, Daugherty MD. PMID: 37242344; PMCID: PMC10221186.
      View in: PubMed   Mentions: 1  
    8. Bacterial origin of a key innovation in the evolution of the vertebrate eye. Proc Natl Acad Sci U S A. 2023 04 18; 120(16):e2214815120. Kalluraya CA, Weitzel AJ, Tsu BV, Daugherty MD. PMID: 37036996; PMCID: PMC10120077.
      View in: PubMed   Mentions: 4     Fields:    Translation:AnimalsCells
    9. SARS-CoV-2 Uses Nonstructural Protein 16 To Evade Restriction by IFIT1 and IFIT3. J Virol. 2023 02 28; 97(2):e0153222. Schindewolf C, Lokugamage K, Vu MN, Johnson BA, Scharton D, Plante JA, Kalveram B, Crocquet-Valdes PA, Sotcheff S, Jaworski E, Alvarado RE, Debbink K, Daugherty MD, Weaver SC, Routh AL, Walker DH, Plante KS, Menachery VD. PMID: 36722972; PMCID: PMC9973020.
      View in: PubMed   Mentions: 2     Fields:    Translation:AnimalsCells
    10. Virology under the Microscope-a Call for Rational Discourse. J Virol. 2023 02 28; 97(2):e0008923. Goodrum F, Lowen AC, Lakdawala S, Alwine J, Casadevall A, Imperiale MJ, Atwood W, Avgousti D, Baines J, Banfield B, Banks L, Bhaduri-McIntosh S, Bhattacharya D, Blanco-Melo D, Bloom D, Boon A, Boulant S, Brandt C, Broadbent A, Brooke C, Cameron C, Campos S, Caposio P, Chan G, Cliffe A, Coffin J, Collins K, Damania B, Daugherty M, Debbink K, DeCaprio J, Dermody T, Dikeakos J, DiMaio D, Dinglasan R, Duprex WP, Dutch R, Elde N, Emerman M, Enquist L, Fane B, Fernandez-Sesma A, Flenniken M, Frappier L, Frieman M, Frueh K, Gack M, Gaglia M, Gallagher T, Galloway D, García-Sastre A, Geballe A, Glaunsinger B, Goff S, Greninger A, Hancock M, Harris E, Heaton N, Heise M, Heldwein E, Hogue B, Horner S, Hutchinson E, Hyser J, Jackson W, Kalejta R, Kamil J, Karst S, Kirchhoff F, Knipe D, Kowalik T, Lagunoff M, Laimins L, Langlois R, Lauring A, Lee B, Leib D, Liu SL, Longnecker R, Lopez C, Luftig M, Lund J, Manicassamy B, McFadden G, McIntosh M, Mehle A, Miller WA, Mohr I, Moody C, Moorman N, Moscona A, Mounce B, Munger J, Münger K, Murphy E, Naghavi M, Nelson J, Neufeldt C, Nikolich J, O'Connor C, Ono A, Orenstein W, Ornelles D, Ou JH, Parker J, Parrish C, Pekosz A, Pellett P, Pfeiffer J, Plemper R, Polyak S, Purdy J, Pyeon D, Quinones-Mateu M, Renne R, Rice C, Schoggins J, Roller R, Russell C, Sandri-Goldin R, Sapp M, Schang L, Schmid S, Schultz-Cherry S, Semler B, Shenk T, Silvestri G, Simon V, Smith G, Smith J, Spindler K, Stanifer M, Subbarao K, Sundquist W, Suthar M, Sutton T, Tai A, Tarakanova V, tenOever B, Tibbetts S, Tompkins S, Toth Z, van Doorslaer K, Vignuzzi M, Wallace N, Walsh D, Weekes M, Weinberg J, Weitzman M, Weller S, Whelan S, White E, Williams B, Wobus C, Wong S, Yurochko A. PMID: 36700640; PMCID: PMC9972907.
      View in: PubMed   Mentions: 4     Fields:    Translation:HumansCellsPHPublic Health
    11. Virology under the Microscope-a Call for Rational Discourse. mSphere. 2023 04 20; 8(2):e0003423. Goodrum F, Lowen AC, Lakdawala S, Alwine J, Casadevall A, Imperiale MJ, Atwood W, Avgousti D, Baines J, Banfield B, Banks L, Bhaduri-McIntosh S, Bhattacharya D, Blanco-Melo D, Bloom D, Boon A, Boulant S, Brandt C, Broadbent A, Brooke C, Cameron C, Campos S, Caposio P, Chan G, Cliffe A, Coffin J, Collins K, Damania B, Daugherty M, Debbink K, DeCaprio J, Dermody T, Dikeakos J, DiMaio D, Dinglasan R, Duprex WP, Dutch R, Elde N, Emerman M, Enquist L, Fane B, Fernandez-Sesma A, Flenniken M, Frappier L, Frieman M, Frueh K, Gack M, Gaglia M, Gallagher T, Galloway D, García-Sastre A, Geballe A, Glaunsinger B, Goff S, Greninger A, Hancock M, Harris E, Heaton N, Heise M, Heldwein E, Hogue B, Horner S, Hutchinson E, Hyser J, Jackson W, Kalejta R, Kamil J, Karst S, Kirchhoff F, Knipe D, Kowalik T, Lagunoff M, Laimins L, Langlois R, Lauring A, Lee B, Leib D, Liu SL, Longnecker R, Lopez C, Luftig M, Lund J, Manicassamy B, McFadden G, McIntosh M, Mehle A, Miller WA, Mohr I, Moody C, Moorman N, Moscona A, Mounce B, Munger J, Münger K, Murphy E, Naghavi M, Nelson J, Neufeldt C, Nikolich J, O'Connor C, Ono A, Orenstein W, Ornelles D, Ou JH, Parker J, Parrish C, Pekosz A, Pellett P, Pfeiffer J, Plemper R, Polyak S, Purdy J, Pyeon D, Quinones-Mateu M, Renne R, Rice C, Schoggins J, Roller R, Russell C, Sandri-Goldin R, Sapp M, Schang L, Schmid S, Schultz-Cherry S, Semler B, Shenk T, Silvestri G, Simon V, Smith G, Smith J, Spindler K, Stanifer M, Subbarao K, Sundquist W, Suthar M, Sutton T, Tai A, Tarakanova V, tenOever B, Tibbetts S, Tompkins S, Toth Z, van Doorslaer K, Vignuzzi M, Wallace N, Walsh D, Weekes M, Weinberg J, Weitzman M, Weller S, Whelan S, White E, Williams B, Wobus C, Wong S, Yurochko A. PMID: 36700653; PMCID: PMC10117089.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansCellsPHPublic Health
    12. Virology under the Microscope-a Call for Rational Discourse. mBio. 2023 02 28; 14(1):e0018823. Goodrum F, Lowen AC, Lakdawala S, Alwine J, Casadevall A, Imperiale MJ, Atwood W, Avgousti D, Baines J, Banfield B, Banks L, Bhaduri-McIntosh S, Bhattacharya D, Blanco-Melo D, Bloom D, Boon A, Boulant S, Brandt C, Broadbent A, Brooke C, Cameron C, Campos S, Caposio P, Chan G, Cliffe A, Coffin J, Collins K, Damania B, Daugherty M, Debbink K, DeCaprio J, Dermody T, Dikeakos J, DiMaio D, Dinglasan R, Duprex WP, Dutch R, Elde N, Emerman M, Enquist L, Fane B, Fernandez-Sesma A, Flenniken M, Frappier L, Frieman M, Frueh K, Gack M, Gaglia M, Gallagher T, Galloway D, García-Sastre A, Geballe A, Glaunsinger B, Goff S, Greninger A, Hancock M, Harris E, Heaton N, Heise M, Heldwein E, Hogue B, Horner S, Hutchinson E, Hyser J, Jackson W, Kalejta R, Kamil J, Karst S, Kirchhoff F, Knipe D, Kowalik T, Lagunoff M, Laimins L, Langlois R, Lauring A, Lee B, Leib D, Liu SL, Longnecker R, Lopez C, Luftig M, Lund J, Manicassamy B, McFadden G, McIntosh M, Mehle A, Miller WA, Mohr I, Moody C, Moorman N, Moscona A, Mounce B, Munger J, Münger K, Murphy E, Naghavi M, Nelson J, Neufeldt C, Nikolich J, O'Connor C, Ono A, Orenstein W, Ornelles D, Ou JH, Parker J, Parrish C, Pekosz A, Pellett P, Pfeiffer J, Plemper R, Polyak S, Purdy J, Pyeon D, Quinones-Mateu M, Renne R, Rice C, Schoggins J, Roller R, Russell C, Sandri-Goldin R, Sapp M, Schang L, Schmid S, Schultz-Cherry S, Semler B, Shenk T, Silvestri G, Simon V, Smith G, Smith J, Spindler K, Stanifer M, Subbarao K, Sundquist W, Suthar M, Sutton T, Tai A, Tarakanova V, tenOever B, Tibbetts S, Tompkins S, Toth Z, van Doorslaer K, Vignuzzi M, Wallace N, Walsh D, Weekes M, Weinberg J, Weitzman M, Weller S, Whelan S, White E, Williams B, Wobus C, Wong S, Yurochko A. PMID: 36700642; PMCID: PMC9973315.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansCellsPHPublic Health
    13. Antiviral function and viral antagonism of the rapidly evolving dynein activating adaptor NINL. Elife. 2022 10 12; 11. Stevens DA, Beierschmitt C, Mahesula S, Corley MR, Salogiannis J, Tsu BV, Cao B, Ryan AP, Hakozawki H, Reck-Peterson SL, Daugherty MD. PMID: 36222652; PMCID: PMC9651953.
      View in: PubMed   Mentions: 3     Fields:    Translation:Cells
    14. Co-opted genes of algal origin protect C. elegans against cyanogenic toxins. Curr Biol. 2022 Nov 21; 32(22):4941-4948.e3. Wang B, Pandey T, Long Y, Delgado-Rodriguez SE, Daugherty MD, Ma DK. PMID: 36223775; PMCID: PMC9691542.
      View in: PubMed   Mentions: 2     Fields:    Translation:Animals
    15. SARS-CoV-2 Uses Nonstructural Protein 16 to Evade Restriction by IFIT1 and IFIT3. bioRxiv. 2022 Sep 26. Schindewolf C, Lokugamage K, Vu MN, Johnson BA, Scharton D, Plante JA, Kalveram B, Crocquet-Valdes PA, Sotcheff S, Jaworski E, Alvarado RE, Debbink K, Daugherty MD, Weaver SC, Routh AL, Walker DH, Plante KS, Menachery VD. PMID: 36203546; PMCID: PMC9536030.
      View in: PubMed   Mentions:
    16. Host specific sensing of coronaviruses and picornaviruses by the CARD8 inflammasome. bioRxiv. 2022 Sep 22. Tsu BV, Agarwal R, Gokhale NS, Kulsuptrakul J, Ryan AP, Castro LK, Beierschmitt CM, Turcotte EA, Fay EJ, Vance RE, Hyde JL, Savan R, Mitchell PS, Daugherty MD. PMID: 36172130; PMCID: PMC9516851.
      View in: PubMed   Mentions:
    17. Running With Scissors: Evolutionary Conflicts Between Viral Proteases and the Host Immune System. Front Immunol. 2021; 12:769543. Tsu BV, Fay EJ, Nguyen KT, Corley MR, Hosuru B, Dominguez VA, Daugherty MD. PMID: 34790204; PMCID: PMC8591160.
      View in: PubMed   Mentions: 15     Fields:    Translation:HumansAnimals
    18. ADP-ribosyltransferases, an update on function and nomenclature. FEBS J. 2022 12; 289(23):7399-7410. Lüscher B, Ahel I, Altmeyer M, Ashworth A, Bai P, Chang P, Cohen M, Corda D, Dantzer F, Daugherty MD, Dawson TM, Dawson VL, Deindl S, Fehr AR, Feijs KLH, Filippov DV, Gagné JP, Grimaldi G, Guettler S, Hoch NC, Hottiger MO, Korn P, Kraus WL, Ladurner A, Lehtiö L, Leung AKL, Lord CJ, Mangerich A, Matic I, Matthews J, Moldovan GL, Moss J, Natoli G, Nielsen ML, Niepel M, Nolte F, Pascal J, Paschal BM, Pawlowski K, Poirier GG, Smith S, Timinszky G, Wang ZQ, Yélamos J, Yu X, Zaja R, Ziegler M. PMID: 34323016; PMCID: PMC9027952.
      View in: PubMed   Mentions: 78     Fields:    Translation:Cells
    19. Ribosome quality control activity potentiates vaccinia virus protein synthesis during infection. J Cell Sci. 2021 04 15; 134(8). Sundaramoorthy E, Ryan AP, Fulzele A, Leonard M, Daugherty MD, Bennett EJ. PMID: 33912921; PMCID: PMC8106952.
      View in: PubMed   Mentions: 11     Fields:    Translation:HumansCells
    20. Diverse viral proteases activate the NLRP1 inflammasome. Elife. 2021 01 07; 10. Tsu BV, Beierschmitt C, Ryan AP, Agarwal R, Mitchell PS, Daugherty MD. PMID: 33410748; PMCID: PMC7857732.
      View in: PubMed   Mentions: 53     Fields:    Translation:Humans
    21. Cell-cycle-gated feedback control mediates desensitization to interferon stimulation. Elife. 2020 09 18; 9. Mudla A, Jiang Y, Arimoto KI, Xu B, Rajesh A, Ryan AP, Wang W, Daugherty MD, Zhang DE, Hao N. PMID: 32945770; PMCID: PMC7500952.
      View in: PubMed   Mentions: 9     Fields:    Translation:HumansCells
    22. Diversification of the Caenorhabditis heat shock response by Helitron transposable elements. Elife. 2019 12 11; 8. Garrigues JM, Tsu BV, Daugherty MD, Pasquinelli AE. PMID: 31825311; PMCID: PMC6927752.
      View in: PubMed   Mentions: 14     Fields:    Translation:AnimalsCells
    23. RNA-binding protein isoforms ZAP-S and ZAP-L have distinct antiviral and immune resolution functions. Nat Immunol. 2019 12; 20(12):1610-1620. Schwerk J, Soveg FW, Ryan AP, Thomas KR, Hatfield LD, Ozarkar S, Forero A, Kell AM, Roby JA, So L, Hyde JL, Gale M, Daugherty MD, Savan R. PMID: 31740798; PMCID: PMC7240801.
      View in: PubMed   Mentions: 48     Fields:    Translation:HumansCells
    24. Gene conversion generates evolutionary novelty that fuels genetic conflicts. Curr Opin Genet Dev. 2019 10; 58-59:49-54. Daugherty MD, Zanders SE. PMID: 31466040; PMCID: PMC6889005.
      View in: PubMed   Mentions: 11     Fields:    Translation:Animals
    25. ICTV Virus Taxonomy Profile: Polyomaviridae. J Gen Virol. 2017 Jun; 98(6):1159-1160. Moens U, Calvignac-Spencer S, Lauber C, Ramqvist T, Feltkamp MCW, Daugherty MD, Verschoor EJ, Ehlers B. PMID: 28640744; PMCID: PMC5656788.
      View in: PubMed   Mentions: 69     Fields:    Translation:HumansAnimalsCells
    26. Functional and Evolutionary Analyses Identify Proteolysis as a General Mechanism for NLRP1 Inflammasome Activation. PLoS Pathog. 2016 Dec; 12(12):e1006052. Chavarría-Smith J, Mitchell PS, Ho AM, Daugherty MD, Vance RE. PMID: 27926929; PMCID: PMC5142783.
      View in: PubMed   Mentions: 54     Fields:    Translation:HumansAnimalsCells
    27. Evolution-guided functional analyses reveal diverse antiviral specificities encoded by IFIT1 genes in mammals. Elife. 2016 05 31; 5. Daugherty MD, Schaller AM, Geballe AP, Malik HS. PMID: 27240734; PMCID: PMC4887208.
      View in: PubMed   Mentions: 50     Fields:    Translation:HumansAnimalsCells
    28. A taxonomy update for the family Polyomaviridae. Arch Virol. 2016 Jun; 161(6):1739-50. Polyomaviridae Study Group of the International Committee on Taxonomy of Viruses, Calvignac-Spencer S, Feltkamp MC, Daugherty MD, Moens U, Ramqvist T, Johne R, Ehlers B. PMID: 26923930.
      View in: PubMed   Mentions: 67     Fields:    Translation:HumansAnimalsCells
    29. Transferred interbacterial antagonism genes augment eukaryotic innate immune function. Nature. 2015 Feb 05; 518(7537):98-101. Chou S, Daugherty MD, Peterson SB, Biboy J, Yang Y, Jutras BL, Fritz-Laylin LK, Ferrin MA, Harding BN, Jacobs-Wagner C, Yang XF, Vollmer W, Malik HS, Mougous JD. PMID: 25470067; PMCID: PMC4713192.
      View in: PubMed   Mentions: 45     Fields:    Translation:AnimalsCells
    30. How a virus blocks a cellular emergency access lane to the nucleus, STAT! Cell Host Microbe. 2014 Aug 13; 16(2):150-152. Daugherty MD, Malik HS. PMID: 25121743.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansCells
    31. Rapid evolution of PARP genes suggests a broad role for ADP-ribosylation in host-virus conflicts. PLoS Genet. 2014; 10(5):e1004403. Daugherty MD, Young JM, Kerns JA, Malik HS. PMID: 24875882; PMCID: PMC4038475.
      View in: PubMed   Mentions: 97     Fields:    Translation:HumansCells
    32. Molecular basis for specific recognition of bacterial ligands by NAIP/NLRC4 inflammasomes. Mol Cell. 2014 Apr 10; 54(1):17-29. Tenthorey JL, Kofoed EM, Daugherty MD, Malik HS, Vance RE. PMID: 24657167; PMCID: PMC3988258.
      View in: PubMed   Mentions: 94     Fields:    Translation:HumansAnimalsCells
    33. Identification of an overprinting gene in Merkel cell polyomavirus provides evolutionary insight into the birth of viral genes. Proc Natl Acad Sci U S A. 2013 Jul 30; 110(31):12744-9. Carter JJ, Daugherty MD, Qi X, Bheda-Malge A, Wipf GC, Robinson K, Roman A, Malik HS, Galloway DA. PMID: 23847207; PMCID: PMC3732942.
      View in: PubMed   Mentions: 80     Fields:    Translation:Cells
    34. Rules of engagement: molecular insights from host-virus arms races. Annu Rev Genet. 2012; 46:677-700. Daugherty MD, Malik HS. PMID: 23145935.
      View in: PubMed   Mentions: 258     Fields:    Translation:HumansAnimalsCells
    35. Comparative analysis of RNA/protein dynamics for the arginine-rich-binding motif and zinc-finger-binding motif proteins encoded by HIV-1. Biophys J. 2010 Nov 17; 99(10):3454-62. Wang H, Ma X, Yeh YS, Zhu Y, Daugherty MD, Frankel AD, Musier-Forsyth K, Barbara PF. PMID: 21081095; PMCID: PMC2980704.
      View in: PubMed   Mentions: 3     Fields:    Translation:Cells
    36. Structural basis for cooperative RNA binding and export complex assembly by HIV Rev. Nat Struct Mol Biol. 2010 Nov; 17(11):1337-42. Daugherty MD, Liu B, Frankel AD. PMID: 20953181; PMCID: PMC2988976.
      View in: PubMed   Mentions: 102     Fields:    Translation:Cells
    37. HIV Rev response element (RRE) directs assembly of the Rev homooligomer into discrete asymmetric complexes. Proc Natl Acad Sci U S A. 2010 Jul 13; 107(28):12481-6. Daugherty MD, Booth DS, Jayaraman B, Cheng Y, Frankel AD. PMID: 20616058; PMCID: PMC2906596.
      View in: PubMed   Mentions: 55     Fields:    Translation:Cells
    38. A solution to limited genomic capacity: using adaptable binding surfaces to assemble the functional HIV Rev oligomer on RNA. Mol Cell. 2008 Sep 26; 31(6):824-34. Daugherty MD, D'Orso I, Frankel AD. PMID: 18922466; PMCID: PMC2651398.
      View in: PubMed   Mentions: 74     Fields:    Translation:Cells
    39. Subangstrom crystallography reveals that short ionic hydrogen bonds, and not a His-Asp low-barrier hydrogen bond, stabilize the transition state in serine protease catalysis. J Am Chem Soc. 2006 Jul 19; 128(28):9086-102. Fuhrmann CN, Daugherty MD, Agard DA. PMID: 16834383.
      View in: PubMed   Mentions: 37     Fields:    Translation:Cells
    40. An alpha-helical peptidomimetic inhibitor of the HIV-1 Rev-RRE interaction. J Am Chem Soc. 2006 Mar 22; 128(11):3496-7. Mills NL, Daugherty MD, Frankel AD, Guy RK. PMID: 16536504; PMCID: PMC2566309.
      View in: PubMed   Mentions: 21     Fields:    Translation:Cells
    41. A simple motif for protein recognition in DNA secondary structures. J Mol Biol. 2005 Sep 02; 351(5):982-94. Landt SG, Ramirez A, Daugherty MD, Frankel AD. PMID: 16055152.
      View in: PubMed   Mentions: 6     Fields:    Translation:Cells
    42. Should we expect population thresholds for wildlife disease? Trends Ecol Evol. 2005 Sep; 20(9):511-9. Lloyd-Smith JO, Cross PC, Briggs CJ, Daugherty M, Getz WM, Latto J, Sanchez MS, Smith AB, Swei A. PMID: 16701428.
      View in: PubMed   Mentions: 170     Fields:    
    43. A single intermolecular contact mediates intramolecular stabilization of both RNA and protein. Proc Natl Acad Sci U S A. 2005 May 10; 102(19):6849-54. Calabro V, Daugherty MD, Frankel AD. PMID: 15857951; PMCID: PMC1100766.
      View in: PubMed   Mentions: 10     Fields:    Translation:Cells
    44. Experimental determination and system level analysis of essential genes in Escherichia coli MG1655. J Bacteriol. 2003 Oct; 185(19):5673-84. Gerdes SY, Scholle MD, Campbell JW, Balázsi G, Ravasz E, Daugherty MD, Somera AL, Kyrpides NC, Anderson I, Gelfand MS, Bhattacharya A, Kapatral V, D'Souza M, Baev MV, Grechkin Y, Mseeh F, Fonstein MY, Overbeek R, Barabási AL, Oltvai ZN, Osterman AL. PMID: 13129938; PMCID: PMC193955.
      View in: PubMed   Mentions: 341     Fields:    Translation:Cells
    45. From genetic footprinting to antimicrobial drug targets: examples in cofactor biosynthetic pathways. J Bacteriol. 2002 Aug; 184(16):4555-72. Gerdes SY, Scholle MD, D'Souza M, Bernal A, Baev MV, Farrell M, Kurnasov OV, Daugherty MD, Mseeh F, Polanuyer BM, Campbell JW, Anantha S, Shatalin KY, Chowdhury SA, Fonstein MY, Osterman AL. PMID: 12142426; PMCID: PMC135229.
      View in: PubMed   Mentions: 105     Fields:    Translation:Cells
    46. Complete reconstitution of the human coenzyme A biosynthetic pathway via comparative genomics. J Biol Chem. 2002 Jun 14; 277(24):21431-9. Daugherty M, Polanuyer B, Farrell M, Scholle M, Lykidis A, de Crécy-Lagard V, Osterman A. PMID: 11923312.
      View in: PubMed   Mentions: 85     Fields:    Translation:HumansCells
    47. Archaeal shikimate kinase, a new member of the GHMP-kinase family. J Bacteriol. 2001 Jan; 183(1):292-300. Daugherty M, Vonstein V, Overbeek R, Osterman A. PMID: 11114929; PMCID: PMC94878.
      View in: PubMed   Mentions: 35     Fields:    Translation:Cells
    48. Structure and mechanism of homoserine kinase: prototype for the GHMP kinase superfamily. Structure. 2000 Dec 15; 8(12):1247-57. Zhou T, Daugherty M, Grishin NV, Osterman AL, Zhang H. PMID: 11188689.
      View in: PubMed   Mentions: 42     Fields:    Translation:HumansCells
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