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ADP-ribosyltransferases, an update on function and nomenclature. FEBS J. 2021 Jul 29.
Lüscher B, Ahel I, Altmeyer M, Ashworth A, Bai P, Chang P, Cohen M, Corda D, Dantzer F, Daugherty MD, Dawson TM, Dawson VL, Deindl S, Fehr AR, Feijs KLH, Filippov DV, Gagné JP, Grimaldi G, Guettler S, Hoch NC, Hottiger MO, Korn P, Kraus WL, Ladurner A, Lehtiö L, Leung AKL, Lord CJ, Mangerich A, Matic I, Matthews J, Moldovan GL, Moss J, Natoli G, Nielsen ML, Niepel M, Nolte F, Pascal J, Paschal BM, Pawlowski K, Poirier GG, Smith S, Timinszky G, Wang ZQ, Yélamos J, Yu X, Zaja R, Ziegler M. PMID: 34323016.
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Ribosome quality control activity potentiates vaccinia virus protein synthesis during infection. J Cell Sci. 2021 04 15; 134(8).
Sundaramoorthy E, Ryan AP, Fulzele A, Leonard M, Daugherty MD, Bennett EJ. PMID: 33912921.
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HumansCells
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Diverse viral proteases activate the NLRP1 inflammasome. Elife. 2021 Jan 07; 10.
Tsu BV, Beierschmitt C, Ryan AP, Agarwal R, Mitchell PS, Daugherty MD. PMID: 33410748.
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Cell-cycle-gated feedback control mediates desensitization to interferon stimulation. Elife. 2020 09 18; 9.
Mudla A, Jiang Y, Arimoto KI, Xu B, Rajesh A, Ryan AP, Wang W, Daugherty MD, Zhang DE, Hao N. PMID: 32945770.
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2 Fields:
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HumansCells
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Diversification of the Caenorhabditis heat shock response by Helitron transposable elements. Elife. 2019 12 11; 8.
Garrigues JM, Tsu BV, Daugherty MD, Pasquinelli AE. PMID: 31825311.
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2 Fields:
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AnimalsCells
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RNA-binding protein isoforms ZAP-S and ZAP-L have distinct antiviral and immune resolution functions. Nat Immunol. 2019 12; 20(12):1610-1620.
Schwerk J, Soveg FW, Ryan AP, Thomas KR, Hatfield LD, Ozarkar S, Forero A, Kell AM, Roby JA, So L, Hyde JL, Gale M, Daugherty MD, Savan R. PMID: 31740798.
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16 Fields:
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HumansCells
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Gene conversion generates evolutionary novelty that fuels genetic conflicts. Curr Opin Genet Dev. 2019 10; 58-59:49-54.
Daugherty MD, Zanders SE. PMID: 31466040.
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5 Fields:
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Animals
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ICTV Virus Taxonomy Profile: Polyomaviridae. J Gen Virol. 2017 Jun; 98(6):1159-1160.
Moens U, Calvignac-Spencer S, Lauber C, Ramqvist T, Feltkamp MCW, Daugherty MD, Verschoor EJ, Ehlers B, Ictv Report Consortium . PMID: 28640744.
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40 Fields:
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HumansAnimalsCells
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Functional and Evolutionary Analyses Identify Proteolysis as a General Mechanism for NLRP1 Inflammasome Activation. PLoS Pathog. 2016 Dec; 12(12):e1006052.
Chavarría-Smith J, Mitchell PS, Ho AM, Daugherty MD, Vance RE. PMID: 27926929.
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28 Fields:
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HumansAnimalsCells
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Evolution-guided functional analyses reveal diverse antiviral specificities encoded by IFIT1 genes in mammals. Elife. 2016 05 31; 5.
Daugherty MD, Schaller AM, Geballe AP, Malik HS. PMID: 27240734.
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30 Fields:
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HumansAnimalsCells
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A taxonomy update for the family Polyomaviridae. Arch Virol. 2016 Jun; 161(6):1739-50.
Polyomaviridae Study Group of the International Committee on Taxonomy of Viruses , Calvignac-Spencer S, Feltkamp MC, Daugherty MD, Moens U, Ramqvist T, Johne R, Ehlers B. PMID: 26923930.
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51 Fields:
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HumansAnimalsCells
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Transferred interbacterial antagonism genes augment eukaryotic innate immune function. Nature. 2015 Feb 05; 518(7537):98-101.
Chou S, Daugherty MD, Peterson SB, Biboy J, Yang Y, Jutras BL, Fritz-Laylin LK, Ferrin MA, Harding BN, Jacobs-Wagner C, Yang XF, Vollmer W, Malik HS, Mougous JD. PMID: 25470067.
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32 Fields:
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AnimalsCells
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How a virus blocks a cellular emergency access lane to the nucleus, STAT! . 2014 Aug 13; 16(2):150-152.
Daugherty MD, Malik HS. PMID: 25121743.
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Rapid evolution of PARP genes suggests a broad role for ADP-ribosylation in host-virus conflicts. PLoS Genet. 2014; 10(5):e1004403.
Daugherty MD, Young JM, Kerns JA, Malik HS. PMID: 24875882.
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62 Fields:
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HumansCells
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Molecular basis for specific recognition of bacterial ligands by NAIP/NLRC4 inflammasomes. Mol Cell. 2014 Apr 10; 54(1):17-29.
Tenthorey JL, Kofoed EM, Daugherty MD, Malik HS, Vance RE. PMID: 24657167.
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77 Fields:
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HumansAnimalsCells
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Identification of an overprinting gene in Merkel cell polyomavirus provides evolutionary insight into the birth of viral genes. Proc Natl Acad Sci U S A. 2013 Jul 30; 110(31):12744-9.
Carter JJ, Daugherty MD, Qi X, Bheda-Malge A, Wipf GC, Robinson K, Roman A, Malik HS, Galloway DA. PMID: 23847207.
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59 Fields:
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Cells
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Rules of engagement: molecular insights from host-virus arms races. Annu Rev Genet. 2012; 46:677-700.
Daugherty MD, Malik HS. PMID: 23145935.
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177 Fields:
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HumansAnimalsCells
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Comparative analysis of RNA/protein dynamics for the arginine-rich-binding motif and zinc-finger-binding motif proteins encoded by HIV-1. Biophys J. 2010 Nov 17; 99(10):3454-62.
Wang H, Ma X, Yeh YS, Zhu Y, Daugherty MD, Frankel AD, Musier-Forsyth K, Barbara PF. PMID: 21081095.
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PubMed Mentions:
3 Fields:
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Cells
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Structural basis for cooperative RNA binding and export complex assembly by HIV Rev. Nat Struct Mol Biol. 2010 Nov; 17(11):1337-42.
Daugherty MD, Liu B, Frankel AD. PMID: 20953181.
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88 Fields:
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Cells
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HIV Rev response element (RRE) directs assembly of the Rev homooligomer into discrete asymmetric complexes. Proc Natl Acad Sci U S A. 2010 Jul 13; 107(28):12481-6.
Daugherty MD, Booth DS, Jayaraman B, Cheng Y, Frankel AD. PMID: 20616058.
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47 Fields:
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Cells
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A solution to limited genomic capacity: using adaptable binding surfaces to assemble the functional HIV Rev oligomer on RNA. Mol Cell. 2008 Sep 26; 31(6):824-34.
Daugherty MD, D'Orso I, Frankel AD. PMID: 18922466.
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64 Fields:
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Cells
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Subangstrom crystallography reveals that short ionic hydrogen bonds, and not a His-Asp low-barrier hydrogen bond, stabilize the transition state in serine protease catalysis. J Am Chem Soc. 2006 Jul 19; 128(28):9086-102.
Fuhrmann CN, Daugherty MD, Agard DA. PMID: 16834383.
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30 Fields:
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Cells
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An alpha-helical peptidomimetic inhibitor of the HIV-1 Rev-RRE interaction. J Am Chem Soc. 2006 Mar 22; 128(11):3496-7.
Mills NL, Daugherty MD, Frankel AD, Guy RK. PMID: 16536504.
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18 Fields:
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Cells
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A simple motif for protein recognition in DNA secondary structures. J Mol Biol. 2005 Sep 02; 351(5):982-94.
Landt SG, Ramirez A, Daugherty MD, Frankel AD. PMID: 16055152.
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6 Fields:
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Cells
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Should we expect population thresholds for wildlife disease? Trends Ecol Evol. 2005 Sep; 20(9):511-9.
Lloyd-Smith JO, Cross PC, Briggs CJ, Daugherty M, Getz WM, Latto J, Sanchez MS, Smith AB, Swei A. PMID: 16701428.
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129 Fields:
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A single intermolecular contact mediates intramolecular stabilization of both RNA and protein. Proc Natl Acad Sci U S A. 2005 May 10; 102(19):6849-54.
Calabro V, Daugherty MD, Frankel AD. PMID: 15857951.
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9 Fields:
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Cells
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Experimental determination and system level analysis of essential genes in Escherichia coli MG1655. J Bacteriol. 2003 Oct; 185(19):5673-84.
Gerdes SY, Scholle MD, Campbell JW, Balázsi G, Ravasz E, Daugherty MD, Somera AL, Kyrpides NC, Anderson I, Gelfand MS, Bhattacharya A, Kapatral V, D'Souza M, Baev MV, Grechkin Y, Mseeh F, Fonstein MY, Overbeek R, Barabási AL, Oltvai ZN, Osterman AL. PMID: 13129938.
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304 Fields:
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Cells
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From genetic footprinting to antimicrobial drug targets: examples in cofactor biosynthetic pathways. J Bacteriol. 2002 Aug; 184(16):4555-72.
Gerdes SY, Scholle MD, D'Souza M, Bernal A, Baev MV, Farrell M, Kurnasov OV, Daugherty MD, Mseeh F, Polanuyer BM, Campbell JW, Anantha S, Shatalin KY, Chowdhury SA, Fonstein MY, Osterman AL. PMID: 12142426.
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96 Fields:
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Cells
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Complete reconstitution of the human coenzyme A biosynthetic pathway via comparative genomics. J Biol Chem. 2002 Jun 14; 277(24):21431-9.
Daugherty M, Polanuyer B, Farrell M, Scholle M, Lykidis A, de Crécy-Lagard V, Osterman A. PMID: 11923312.
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64 Fields:
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HumansCells
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Structural basis for the catalysis and substrate specificity of homoserine kinase. Biochemistry. 2001 Sep 11; 40(36):10810-8.
Krishna SS, Zhou T, Daugherty M, Osterman A, Zhang H. PMID: 11535056.
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24 Fields:
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HumansAnimalsCells
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Archaeal shikimate kinase, a new member of the GHMP-kinase family. J Bacteriol. 2001 Jan; 183(1):292-300.
Daugherty M, Vonstein V, Overbeek R, Osterman A. PMID: 11114929.
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36 Fields:
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Cells
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Structure and mechanism of homoserine kinase: prototype for the GHMP kinase superfamily. Structure. 2000 Dec 15; 8(12):1247-57.
Zhou T, Daugherty M, Grishin NV, Osterman AL, Zhang H. PMID: 11188689.
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PubMed Mentions:
37 Fields:
Translation:
HumansCells