Matthew Daugherty

Title(s)Professor, Molecular Biology
SchoolVc-academic Affairs
Address9500 Gilman Drive #
La Jolla CA 92093
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    Collapse Research 
    Collapse research activities and funding
    Pathogen-driven evolution of innate antiviral defense mechanisms
    NIH R35GM133633Aug 1, 2019 - Jun 30, 2024
    Role: Principal Investigator
    Consequences of IFIT Gene Evolution on Species-Specific Antiviral Immunity
    NIH K22AI119017May 12, 2016 - Apr 30, 2018
    Role: Principal Investigator

    Collapse Bibliographic 
    Collapse selected publications
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Short 5' UTRs serve as a marker for viral mRNA translation inhibition by the IFIT2-IFIT3 antiviral complex. bioRxiv. 2025 Feb 11. Glasner DR, Todd C, Cook B, D'Urso A, Khosla S, Estrada E, Wagner JD, Bartels MD, Ford P, Prych J, Hatch K, Yee BA, Ego KM, Liang Q, Holland SR, Case JB, Corbett KD, Diamond MS, Yeo GW, Herzik MA, Van Nostrand EL, Daugherty MD. PMID: 39990370; PMCID: PMC11844544.
      View in: PubMed   Mentions:
    2. Evolutionary and functional analyses reveal a role for the RHIM in tuning RIPK3 activity across vertebrates. bioRxiv. 2025 Jan 31. Fay EJ, Isterabadi K, Rezanka CM, Le J, Daugherty MD. PMID: 39149247; PMCID: PMC11326134.
      View in: PubMed   Mentions:
    3. Zinc-finger PARP proteins ADP-ribosylate alphaviral proteins and are required for interferon-γ-mediated antiviral immunity. Sci Adv. 2025 Jan 31; 11(5):eadm6812. Ryan AP, Delgado-Rodriguez SE, Daugherty MD. PMID: 39888989; PMCID: PMC11784840.
      View in: PubMed   Mentions:    Fields:    
    4. Unchecked growth: Pushing the limits on RNA virus genome size in the absence of known proofreading. Proc Natl Acad Sci U S A. 2024 Sep 03; 121(36):e2414223121. Glasner DR, Daugherty MD. PMID: 39186661; PMCID: PMC11388401.
      View in: PubMed   Mentions:    Fields:    Translation:HumansCells
    5. Structure of the E3 ligase CRL2-ZYG11B with substrates reveals the molecular basis for N-degron recognition and ubiquitination. bioRxiv. 2024 Jun 24. Liu X, Li Y, Castro L, Yu Z, Cheng Y, Daugherty MD, Gross JD. PMID: 38979164; PMCID: PMC11230176.
      View in: PubMed   Mentions:
    6. Correction for Rasmussen et al., "Virology-the path forward". J Virol. 2024 Mar 19; 98(3):e0007424. Rasmussen AL, Gronvall GK, Lowen AC, Goodrum F, Alwine J, Andersen KG, Anthony SJ, Baines J, Banerjee A, Broadbent AJ, Brooke CB, Campos SK, Caposio P, Casadevall A, Chan GC, Cliffe AR, Collins-McMillen D, Connell N, Damania B, Daugherty MD, Debbink K, Dermody TS, DiMaio D, Duprex WP, Emerman M, Galloway DA, Garry RF, Goldstein SA, Greninger AL, Hartman AL, Hogue BG, Horner SM, Hotez PJ, Jung JU, Kamil JP, Karst SM, Laimins L, Lakdawala SS, Landais I, Letko M, Lindenbach B, Liu S-L, Luftig M, McFadden G, Mehle A, Morrison J, Moscona A, Mühlberger E, Munger J, Münger K, Murphy E, Neufeldt CJ, Nikolich JZ, O'Connor CM, Pekosz A, Permar SR, Pfeiffer JK, Popescu SV, Purdy JG, Racaniello VR, Rice CM, Runstadler JA, Sapp MJ, Scott RS, Smith GA, Sorrell EM, Speranza E, Streblow D, Tibbetts SA, Toth Z, Van Doorslaer K, Weiss SR, White EA, White TM, Wobus CE, Worobey M, Yamaoka S, Yurochko A. PMID: 38334328; PMCID: PMC10949460.
      View in: PubMed   Mentions: 2     Fields:    
    7. Virology-the path forward. J Virol. 2024 Jan 23; 98(1):e0179123. Rasmussen AL, Gronvall GK, Lowen AC, Goodrum F, Alwine J, Andersen KG, Anthony SJ, Baines J, Banerjee A, Broadbent AJ, Brooke CB, Campos SK, Caposio P, Casadevall A, Chan GC, Cliffe AR, Collins-McMillen D, Connell N, Damania B, Daugherty MD, Debbink K, Dermody TS, DiMaio D, Duprex WP, Emerman M, Galloway DA, Garry RF, Goldstein SA, Greninger AL, Hartman AL, Hogue BG, Horner SM, Hotez PJ, Jung JU, Kamil JP, Karst SM, Laimins L, Lakdawala SS, Landais I, Letko M, Lindenbach B, Liu S-L, Luftig M, McFadden G, Mehle A, Morrison J, Moscona A, Mühlberger E, Munger J, Münger K, Murphy E, Neufeldt CJ, Nikolich JZ, O'Connor CM, Pekosz A, Permar SR, Pfeiffer JK, Popescu SV, Purdy JG, Racaniello VR, Rice CM, Runstadler JA, Sapp MJ, Scott RS, Smith GA, Sorrell EM, Speranza E, Streblow D, Tibbetts SA, Toth Z, Van Doorslaer K, Weiss SR, White EA, White TM, Wobus CE, Worobey M, Yamaoka S, Yurochko A. PMID: 38168672; PMCID: PMC10804978.
      View in: PubMed   Mentions: 4     Fields:    
    8. Acquired stress resilience through bacteria-to-nematode interdomain horizontal gene transfer. EMBO J. 2023 Dec 11; 42(24):e114835. Pandey T, Kalluraya CA, Wang B, Xu T, Huang X, Guang S, Daugherty MD, Ma DK. PMID: 37953666; PMCID: PMC10711659.
      View in: PubMed   Mentions: 2     Fields:    Translation:AnimalsCells
    9. Structure of LRRK1 and mechanisms of autoinhibition and activation. Nat Struct Mol Biol. 2023 Nov; 30(11):1735-1745. Reimer JM, Dickey AM, Lin YX, Abrisch RG, Mathea S, Chatterjee D, Fay EJ, Knapp S, Daugherty MD, Reck-Peterson SL, Leschziner AE. PMID: 37857821; PMCID: PMC10643122.
      View in: PubMed   Mentions: 1     Fields:    Translation:Humans
    10. Progression of Xylella fastidiosa Infection in Grapevines Under Field Conditions. Phytopathology. 2023 Aug; 113(8):1465-1473. Kahn AK, Sicard A, Cooper ML, Daugherty MP, Donegan MA, Almeida RPP. PMID: 37080548.
      View in: PubMed   Mentions:    Fields:    
    11. Acquired stress resilience through bacteria-to-nematode horizontal gene transfer. bioRxiv. 2023 Aug 21. Pandey T, Kalluraya C, Wang B, Xu T, Huang X, Guang S, Daugherty MD, Ma DK. PMID: 37662235; PMCID: PMC10473587.
      View in: PubMed   Mentions:
    12. Reply to Redmond and McLysaght: Uncertainty in the origin of amphioxus IRBP homologs. Proc Natl Acad Sci U S A. 2023 Aug 22; 120(34):e2310867120. Kalluraya CA, Weitzel AJ, Tsu BV, Daugherty MD. PMID: 37579166; PMCID: PMC10450401.
      View in: PubMed   Mentions:    Fields:    
    13. Tripping the wire: sensing of viral protease activity by CARD8 and NLRP1 inflammasomes. Curr Opin Immunol. 2023 08; 83:102354. Castro LK, Daugherty MD. PMID: 37311351; PMCID: PMC10528193.
      View in: PubMed   Mentions: 6     Fields:    Translation:Humans
    14. Host-specific sensing of coronaviruses and picornaviruses by the CARD8 inflammasome. PLoS Biol. 2023 Jun; 21(6):e3002144. Tsu BV, Agarwal R, Gokhale NS, Kulsuptrakul J, Ryan AP, Fay EJ, Castro LK, Beierschmitt C, Yap C, Turcotte EA, Delgado-Rodriguez SE, Vance RE, Hyde JL, Savan R, Mitchell PS, Daugherty MD. PMID: 37289745; PMCID: PMC10249858.
      View in: PubMed   Mentions: 12     Fields:    Translation:HumansCells
    15. Recurrent Loss of Macrodomain Activity in Host Immunity and Viral Proteins. Pathogens. 2023 May 03; 12(5). Delgado-Rodriguez SE, Ryan AP, Daugherty MD. PMID: 37242344; PMCID: PMC10221186.
      View in: PubMed   Mentions: 5  
    16. Bacterial origin of a key innovation in the evolution of the vertebrate eye. Proc Natl Acad Sci U S A. 2023 04 18; 120(16):e2214815120. Kalluraya CA, Weitzel AJ, Tsu BV, Daugherty MD. PMID: 37036996; PMCID: PMC10120077.
      View in: PubMed   Mentions: 6     Fields:    Translation:AnimalsCells
    17. SARS-CoV-2 Uses Nonstructural Protein 16 To Evade Restriction by IFIT1 and IFIT3. J Virol. 2023 02 28; 97(2):e0153222. Schindewolf C, Lokugamage K, Vu MN, Johnson BA, Scharton D, Plante JA, Kalveram B, Crocquet-Valdes PA, Sotcheff S, Jaworski E, Alvarado RE, Debbink K, Daugherty MD, Weaver SC, Routh AL, Walker DH, Plante KS, Menachery VD. PMID: 36722972; PMCID: PMC9973020.
      View in: PubMed   Mentions: 11     Fields:    Translation:AnimalsCells
    18. Virology under the Microscope-a Call for Rational Discourse. J Virol. 2023 02 28; 97(2):e0008923. Goodrum F, Lowen AC, Lakdawala S, Alwine J, Casadevall A, Imperiale MJ, Atwood W, Avgousti D, Baines J, Banfield B, Banks L, Bhaduri-McIntosh S, Bhattacharya D, Blanco-Melo D, Bloom D, Boon A, Boulant S, Brandt C, Broadbent A, Brooke C, Cameron C, Campos S, Caposio P, Chan G, Cliffe A, Coffin J, Collins K, Damania B, Daugherty M, Debbink K, DeCaprio J, Dermody T, Dikeakos J, DiMaio D, Dinglasan R, Duprex WP, Dutch R, Elde N, Emerman M, Enquist L, Fane B, Fernandez-Sesma A, Flenniken M, Frappier L, Frieman M, Frueh K, Gack M, Gaglia M, Gallagher T, Galloway D, García-Sastre A, Geballe A, Glaunsinger B, Goff S, Greninger A, Hancock M, Harris E, Heaton N, Heise M, Heldwein E, Hogue B, Horner S, Hutchinson E, Hyser J, Jackson W, Kalejta R, Kamil J, Karst S, Kirchhoff F, Knipe D, Kowalik T, Lagunoff M, Laimins L, Langlois R, Lauring A, Lee B, Leib D, Liu SL, Longnecker R, Lopez C, Luftig M, Lund J, Manicassamy B, McFadden G, McIntosh M, Mehle A, Miller WA, Mohr I, Moody C, Moorman N, Moscona A, Mounce B, Munger J, Münger K, Murphy E, Naghavi M, Nelson J, Neufeldt C, Nikolich J, O'Connor C, Ono A, Orenstein W, Ornelles D, Ou JH, Parker J, Parrish C, Pekosz A, Pellett P, Pfeiffer J, Plemper R, Polyak S, Purdy J, Pyeon D, Quinones-Mateu M, Renne R, Rice C, Schoggins J, Roller R, Russell C, Sandri-Goldin R, Sapp M, Schang L, Schmid S, Schultz-Cherry S, Semler B, Shenk T, Silvestri G, Simon V, Smith G, Smith J, Spindler K, Stanifer M, Subbarao K, Sundquist W, Suthar M, Sutton T, Tai A, Tarakanova V, tenOever B, Tibbetts S, Tompkins S, Toth Z, van Doorslaer K, Vignuzzi M, Wallace N, Walsh D, Weekes M, Weinberg J, Weitzman M, Weller S, Whelan S, White E, Williams B, Wobus C, Wong S, Yurochko A. PMID: 36700640; PMCID: PMC9972907.
      View in: PubMed   Mentions: 6     Fields:    Translation:HumansCellsPHPublic Health
    19. Virology under the Microscope-a Call for Rational Discourse. mBio. 2023 02 28; 14(1):e0018823. Goodrum F, Lowen AC, Lakdawala S, Alwine J, Casadevall A, Imperiale MJ, Atwood W, Avgousti D, Baines J, Banfield B, Banks L, Bhaduri-McIntosh S, Bhattacharya D, Blanco-Melo D, Bloom D, Boon A, Boulant S, Brandt C, Broadbent A, Brooke C, Cameron C, Campos S, Caposio P, Chan G, Cliffe A, Coffin J, Collins K, Damania B, Daugherty M, Debbink K, DeCaprio J, Dermody T, Dikeakos J, DiMaio D, Dinglasan R, Duprex WP, Dutch R, Elde N, Emerman M, Enquist L, Fane B, Fernandez-Sesma A, Flenniken M, Frappier L, Frieman M, Frueh K, Gack M, Gaglia M, Gallagher T, Galloway D, García-Sastre A, Geballe A, Glaunsinger B, Goff S, Greninger A, Hancock M, Harris E, Heaton N, Heise M, Heldwein E, Hogue B, Horner S, Hutchinson E, Hyser J, Jackson W, Kalejta R, Kamil J, Karst S, Kirchhoff F, Knipe D, Kowalik T, Lagunoff M, Laimins L, Langlois R, Lauring A, Lee B, Leib D, Liu SL, Longnecker R, Lopez C, Luftig M, Lund J, Manicassamy B, McFadden G, McIntosh M, Mehle A, Miller WA, Mohr I, Moody C, Moorman N, Moscona A, Mounce B, Munger J, Münger K, Murphy E, Naghavi M, Nelson J, Neufeldt C, Nikolich J, O'Connor C, Ono A, Orenstein W, Ornelles D, Ou JH, Parker J, Parrish C, Pekosz A, Pellett P, Pfeiffer J, Plemper R, Polyak S, Purdy J, Pyeon D, Quinones-Mateu M, Renne R, Rice C, Schoggins J, Roller R, Russell C, Sandri-Goldin R, Sapp M, Schang L, Schmid S, Schultz-Cherry S, Semler B, Shenk T, Silvestri G, Simon V, Smith G, Smith J, Spindler K, Stanifer M, Subbarao K, Sundquist W, Suthar M, Sutton T, Tai A, Tarakanova V, tenOever B, Tibbetts S, Tompkins S, Toth Z, van Doorslaer K, Vignuzzi M, Wallace N, Walsh D, Weekes M, Weinberg J, Weitzman M, Weller S, Whelan S, White E, Williams B, Wobus C, Wong S, Yurochko A. PMID: 36700642; PMCID: PMC9973315.
      View in: PubMed   Mentions: 2     Fields:    Translation:HumansCellsPHPublic Health
    20. Virology under the Microscope-a Call for Rational Discourse. mSphere. 2023 04 20; 8(2):e0003423. Goodrum F, Lowen AC, Lakdawala S, Alwine J, Casadevall A, Imperiale MJ, Atwood W, Avgousti D, Baines J, Banfield B, Banks L, Bhaduri-McIntosh S, Bhattacharya D, Blanco-Melo D, Bloom D, Boon A, Boulant S, Brandt C, Broadbent A, Brooke C, Cameron C, Campos S, Caposio P, Chan G, Cliffe A, Coffin J, Collins K, Damania B, Daugherty M, Debbink K, DeCaprio J, Dermody T, Dikeakos J, DiMaio D, Dinglasan R, Duprex WP, Dutch R, Elde N, Emerman M, Enquist L, Fane B, Fernandez-Sesma A, Flenniken M, Frappier L, Frieman M, Frueh K, Gack M, Gaglia M, Gallagher T, Galloway D, García-Sastre A, Geballe A, Glaunsinger B, Goff S, Greninger A, Hancock M, Harris E, Heaton N, Heise M, Heldwein E, Hogue B, Horner S, Hutchinson E, Hyser J, Jackson W, Kalejta R, Kamil J, Karst S, Kirchhoff F, Knipe D, Kowalik T, Lagunoff M, Laimins L, Langlois R, Lauring A, Lee B, Leib D, Liu SL, Longnecker R, Lopez C, Luftig M, Lund J, Manicassamy B, McFadden G, McIntosh M, Mehle A, Miller WA, Mohr I, Moody C, Moorman N, Moscona A, Mounce B, Munger J, Münger K, Murphy E, Naghavi M, Nelson J, Neufeldt C, Nikolich J, O'Connor C, Ono A, Orenstein W, Ornelles D, Ou JH, Parker J, Parrish C, Pekosz A, Pellett P, Pfeiffer J, Plemper R, Polyak S, Purdy J, Pyeon D, Quinones-Mateu M, Renne R, Rice C, Schoggins J, Roller R, Russell C, Sandri-Goldin R, Sapp M, Schang L, Schmid S, Schultz-Cherry S, Semler B, Shenk T, Silvestri G, Simon V, Smith G, Smith J, Spindler K, Stanifer M, Subbarao K, Sundquist W, Suthar M, Sutton T, Tai A, Tarakanova V, tenOever B, Tibbetts S, Tompkins S, Toth Z, van Doorslaer K, Vignuzzi M, Wallace N, Walsh D, Weekes M, Weinberg J, Weitzman M, Weller S, Whelan S, White E, Williams B, Wobus C, Wong S, Yurochko A. PMID: 36700653; PMCID: PMC10117089.
      View in: PubMed   Mentions: 3     Fields:    Translation:HumansCellsPHPublic Health
    21. Antiviral function and viral antagonism of the rapidly evolving dynein activating adaptor NINL. Elife. 2022 10 12; 11. Stevens DA, Beierschmitt C, Mahesula S, Corley MR, Salogiannis J, Tsu BV, Cao B, Ryan AP, Hakozawki H, Reck-Peterson SL, Daugherty MD. PMID: 36222652; PMCID: PMC9651953.
      View in: PubMed   Mentions: 6     Fields:    Translation:Cells
    22. Co-opted genes of algal origin protect C. elegans against cyanogenic toxins. Curr Biol. 2022 11 21; 32(22):4941-4948.e3. Wang B, Pandey T, Long Y, Delgado-Rodriguez SE, Daugherty MD, Ma DK. PMID: 36223775; PMCID: PMC9691542.
      View in: PubMed   Mentions: 8     Fields:    Translation:Animals
    23. SARS-CoV-2 Uses Nonstructural Protein 16 to Evade Restriction by IFIT1 and IFIT3. bioRxiv. 2022 Sep 26. Schindewolf C, Lokugamage K, Vu MN, Johnson BA, Scharton D, Plante JA, Kalveram B, Crocquet-Valdes PA, Sotcheff S, Jaworski E, Alvarado RE, Debbink K, Daugherty MD, Weaver SC, Routh AL, Walker DH, Plante KS, Menachery VD. PMID: 36203546; PMCID: PMC9536030.
      View in: PubMed   Mentions:
    24. Host specific sensing of coronaviruses and picornaviruses by the CARD8 inflammasome. bioRxiv. 2022 Sep 22. Tsu BV, Agarwal R, Gokhale NS, Kulsuptrakul J, Ryan AP, Castro LK, Beierschmitt CM, Turcotte EA, Fay EJ, Vance RE, Hyde JL, Savan R, Mitchell PS, Daugherty MD. PMID: 36172130; PMCID: PMC9516851.
      View in: PubMed   Mentions:
    25. Running With Scissors: Evolutionary Conflicts Between Viral Proteases and the Host Immune System. Front Immunol. 2021; 12:769543. Tsu BV, Fay EJ, Nguyen KT, Corley MR, Hosuru B, Dominguez VA, Daugherty MD. PMID: 34790204; PMCID: PMC8591160.
      View in: PubMed   Mentions: 21     Fields:    Translation:HumansAnimals
    26. ADP-ribosyltransferases, an update on function and nomenclature. FEBS J. 2022 12; 289(23):7399-7410. Lüscher B, Ahel I, Altmeyer M, Ashworth A, Bai P, Chang P, Cohen M, Corda D, Dantzer F, Daugherty MD, Dawson TM, Dawson VL, Deindl S, Fehr AR, Feijs KLH, Filippov DV, Gagné JP, Grimaldi G, Guettler S, Hoch NC, Hottiger MO, Korn P, Kraus WL, Ladurner A, Lehtiö L, Leung AKL, Lord CJ, Mangerich A, Matic I, Matthews J, Moldovan GL, Moss J, Natoli G, Nielsen ML, Niepel M, Nolte F, Pascal J, Paschal BM, Pawlowski K, Poirier GG, Smith S, Timinszky G, Wang ZQ, Yélamos J, Yu X, Zaja R, Ziegler M. PMID: 34323016; PMCID: PMC9027952.
      View in: PubMed   Mentions: 122     Fields:    Translation:Cells
    27. Ribosome quality control activity potentiates vaccinia virus protein synthesis during infection. J Cell Sci. 2021 04 15; 134(8). Sundaramoorthy E, Ryan AP, Fulzele A, Leonard M, Daugherty MD, Bennett EJ. PMID: 33912921; PMCID: PMC8106952.
      View in: PubMed   Mentions: 15     Fields:    Translation:HumansCells
    28. Diverse viral proteases activate the NLRP1 inflammasome. Elife. 2021 01 07; 10. Tsu BV, Beierschmitt C, Ryan AP, Agarwal R, Mitchell PS, Daugherty MD. PMID: 33410748; PMCID: PMC7857732.
      View in: PubMed   Mentions: 70     Fields:    Translation:Humans
    29. Cell-cycle-gated feedback control mediates desensitization to interferon stimulation. Elife. 2020 09 18; 9. Mudla A, Jiang Y, Arimoto KI, Xu B, Rajesh A, Ryan AP, Wang W, Daugherty MD, Zhang DE, Hao N. PMID: 32945770; PMCID: PMC7500952.
      View in: PubMed   Mentions: 10     Fields:    Translation:HumansCells
    30. Diversification of the Caenorhabditis heat shock response by Helitron transposable elements. Elife. 2019 12 11; 8. Garrigues JM, Tsu BV, Daugherty MD, Pasquinelli AE. PMID: 31825311; PMCID: PMC6927752.
      View in: PubMed   Mentions: 16     Fields:    Translation:AnimalsCells
    31. RNA-binding protein isoforms ZAP-S and ZAP-L have distinct antiviral and immune resolution functions. Nat Immunol. 2019 12; 20(12):1610-1620. Schwerk J, Soveg FW, Ryan AP, Thomas KR, Hatfield LD, Ozarkar S, Forero A, Kell AM, Roby JA, So L, Hyde JL, Gale M, Daugherty MD, Savan R. PMID: 31740798; PMCID: PMC7240801.
      View in: PubMed   Mentions: 62     Fields:    Translation:HumansCells
    32. Gene conversion generates evolutionary novelty that fuels genetic conflicts. Curr Opin Genet Dev. 2019 10; 58-59:49-54. Daugherty MD, Zanders SE. PMID: 31466040; PMCID: PMC6889005.
      View in: PubMed   Mentions: 14     Fields:    Translation:Animals
    33. ICTV Virus Taxonomy Profile: Polyomaviridae. J Gen Virol. 2017 Jun; 98(6):1159-1160. Moens U, Calvignac-Spencer S, Lauber C, Ramqvist T, Feltkamp MCW, Daugherty MD, Verschoor EJ, Ehlers B. PMID: 28640744; PMCID: PMC5656788.
      View in: PubMed   Mentions: 81     Fields:    Translation:HumansAnimalsCells
    34. Functional and Evolutionary Analyses Identify Proteolysis as a General Mechanism for NLRP1 Inflammasome Activation. PLoS Pathog. 2016 Dec; 12(12):e1006052. Chavarría-Smith J, Mitchell PS, Ho AM, Daugherty MD, Vance RE. PMID: 27926929; PMCID: PMC5142783.
      View in: PubMed   Mentions: 62     Fields:    Translation:HumansAnimalsCells
    35. Evolution-guided functional analyses reveal diverse antiviral specificities encoded by IFIT1 genes in mammals. Elife. 2016 05 31; 5. Daugherty MD, Schaller AM, Geballe AP, Malik HS. PMID: 27240734; PMCID: PMC4887208.
      View in: PubMed   Mentions: 51     Fields:    Translation:HumansAnimalsCells
    36. A taxonomy update for the family Polyomaviridae. Arch Virol. 2016 Jun; 161(6):1739-50. Polyomaviridae Study Group of the International Committee on Taxonomy of Viruses, Calvignac-Spencer S, Feltkamp MC, Daugherty MD, Moens U, Ramqvist T, Johne R, Ehlers B. PMID: 26923930.
      View in: PubMed   Mentions: 74     Fields:    Translation:HumansAnimalsCells
    37. Transferred interbacterial antagonism genes augment eukaryotic innate immune function. Nature. 2015 Feb 05; 518(7537):98-101. Chou S, Daugherty MD, Peterson SB, Biboy J, Yang Y, Jutras BL, Fritz-Laylin LK, Ferrin MA, Harding BN, Jacobs-Wagner C, Yang XF, Vollmer W, Malik HS, Mougous JD. PMID: 25470067; PMCID: PMC4713192.
      View in: PubMed   Mentions: 56     Fields:    Translation:AnimalsCells
    38. How a virus blocks a cellular emergency access lane to the nucleus, STAT! Cell Host Microbe. 2014 Aug 13; 16(2):150-152. Daugherty MD, Malik HS. PMID: 25121743.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansCells
    39. Rapid evolution of PARP genes suggests a broad role for ADP-ribosylation in host-virus conflicts. PLoS Genet. 2014; 10(5):e1004403. Daugherty MD, Young JM, Kerns JA, Malik HS. PMID: 24875882; PMCID: PMC4038475.
      View in: PubMed   Mentions: 100     Fields:    Translation:HumansCells
    40. Molecular basis for specific recognition of bacterial ligands by NAIP/NLRC4 inflammasomes. Mol Cell. 2014 Apr 10; 54(1):17-29. Tenthorey JL, Kofoed EM, Daugherty MD, Malik HS, Vance RE. PMID: 24657167; PMCID: PMC3988258.
      View in: PubMed   Mentions: 105     Fields:    Translation:HumansAnimalsCells
    41. Identification of an overprinting gene in Merkel cell polyomavirus provides evolutionary insight into the birth of viral genes. Proc Natl Acad Sci U S A. 2013 Jul 30; 110(31):12744-9. Carter JJ, Daugherty MD, Qi X, Bheda-Malge A, Wipf GC, Robinson K, Roman A, Malik HS, Galloway DA. PMID: 23847207; PMCID: PMC3732942.
      View in: PubMed   Mentions: 89     Fields:    Translation:Cells
    42. Rules of engagement: molecular insights from host-virus arms races. Annu Rev Genet. 2012; 46:677-700. Daugherty MD, Malik HS. PMID: 23145935.
      View in: PubMed   Mentions: 278     Fields:    Translation:HumansAnimalsCells
    43. Comparative analysis of RNA/protein dynamics for the arginine-rich-binding motif and zinc-finger-binding motif proteins encoded by HIV-1. Biophys J. 2010 Nov 17; 99(10):3454-62. Wang H, Ma X, Yeh YS, Zhu Y, Daugherty MD, Frankel AD, Musier-Forsyth K, Barbara PF. PMID: 21081095; PMCID: PMC2980704.
      View in: PubMed   Mentions: 3     Fields:    Translation:Cells
    44. Structural basis for cooperative RNA binding and export complex assembly by HIV Rev. Nat Struct Mol Biol. 2010 Nov; 17(11):1337-42. Daugherty MD, Liu B, Frankel AD. PMID: 20953181; PMCID: PMC2988976.
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    45. HIV Rev response element (RRE) directs assembly of the Rev homooligomer into discrete asymmetric complexes. Proc Natl Acad Sci U S A. 2010 Jul 13; 107(28):12481-6. Daugherty MD, Booth DS, Jayaraman B, Cheng Y, Frankel AD. PMID: 20616058; PMCID: PMC2906596.
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    46. A solution to limited genomic capacity: using adaptable binding surfaces to assemble the functional HIV Rev oligomer on RNA. Mol Cell. 2008 Sep 26; 31(6):824-34. Daugherty MD, D'Orso I, Frankel AD. PMID: 18922466; PMCID: PMC2651398.
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    47. Subangstrom crystallography reveals that short ionic hydrogen bonds, and not a His-Asp low-barrier hydrogen bond, stabilize the transition state in serine protease catalysis. J Am Chem Soc. 2006 Jul 19; 128(28):9086-102. Fuhrmann CN, Daugherty MD, Agard DA. PMID: 16834383.
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    48. An alpha-helical peptidomimetic inhibitor of the HIV-1 Rev-RRE interaction. J Am Chem Soc. 2006 Mar 22; 128(11):3496-7. Mills NL, Daugherty MD, Frankel AD, Guy RK. PMID: 16536504; PMCID: PMC2566309.
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    49. A simple motif for protein recognition in DNA secondary structures. J Mol Biol. 2005 Sep 02; 351(5):982-94. Landt SG, Ramirez A, Daugherty MD, Frankel AD. PMID: 16055152.
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    50. Should we expect population thresholds for wildlife disease? Trends Ecol Evol. 2005 Sep; 20(9):511-9. Lloyd-Smith JO, Cross PC, Briggs CJ, Daugherty M, Getz WM, Latto J, Sanchez MS, Smith AB, Swei A. PMID: 16701428.
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    51. A single intermolecular contact mediates intramolecular stabilization of both RNA and protein. Proc Natl Acad Sci U S A. 2005 May 10; 102(19):6849-54. Calabro V, Daugherty MD, Frankel AD. PMID: 15857951; PMCID: PMC1100766.
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    52. Experimental determination and system level analysis of essential genes in Escherichia coli MG1655. J Bacteriol. 2003 Oct; 185(19):5673-84. Gerdes SY, Scholle MD, Campbell JW, Balázsi G, Ravasz E, Daugherty MD, Somera AL, Kyrpides NC, Anderson I, Gelfand MS, Bhattacharya A, Kapatral V, D'Souza M, Baev MV, Grechkin Y, Mseeh F, Fonstein MY, Overbeek R, Barabási AL, Oltvai ZN, Osterman AL. PMID: 13129938; PMCID: PMC193955.
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    53. From genetic footprinting to antimicrobial drug targets: examples in cofactor biosynthetic pathways. J Bacteriol. 2002 Aug; 184(16):4555-72. Gerdes SY, Scholle MD, D'Souza M, Bernal A, Baev MV, Farrell M, Kurnasov OV, Daugherty MD, Mseeh F, Polanuyer BM, Campbell JW, Anantha S, Shatalin KY, Chowdhury SA, Fonstein MY, Osterman AL. PMID: 12142426; PMCID: PMC135229.
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    54. Complete reconstitution of the human coenzyme A biosynthetic pathway via comparative genomics. J Biol Chem. 2002 Jun 14; 277(24):21431-9. Daugherty M, Polanuyer B, Farrell M, Scholle M, Lykidis A, de Crécy-Lagard V, Osterman A. PMID: 11923312.
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    55. Structural basis for the catalysis and substrate specificity of homoserine kinase. Biochemistry. 2001 Sep 11; 40(36):10810-8. Krishna SS, Zhou T, Daugherty M, Osterman A, Zhang H. PMID: 11535056.
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    56. Archaeal shikimate kinase, a new member of the GHMP-kinase family. J Bacteriol. 2001 Jan; 183(1):292-300. Daugherty M, Vonstein V, Overbeek R, Osterman A. PMID: 11114929; PMCID: PMC94878.
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    57. Structure and mechanism of homoserine kinase: prototype for the GHMP kinase superfamily. Structure. 2000 Dec 15; 8(12):1247-57. Zhou T, Daugherty M, Grishin NV, Osterman AL, Zhang H. PMID: 11188689.
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