Suresh Subramani

Title(s)Recall Faculty, Molecular Biology
SchoolVc-academic Affairs
Address9500 Gilman Drive #
La Jolla CA 92093
ORCID ORCID Icon0000-0003-0180-1742 Additional info
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    Collapse Research 
    Collapse Research Activities and Funding
    Developing AIM/LIR-independent fluorescent protein sensors for mAtg8s
    NIH R03AI142388Feb 1, 2019 - Jan 31, 2021
    Role: Principal Investigator
    Mechanisms involved in Pexophagy
    NIH R01GM069373Aug 1, 2006 - Dec 31, 2014
    Role: Principal Investigator
    Shuttling of Peroxisomal Targeting Sequence Receptors
    NIH R01DK059844Aug 1, 2002 - Jul 31, 2007
    Role: Principal Investigator
    Comprehensive Biology: Exploiting the Yeast Genome
    NIH P41RR011823Sep 30, 1996 - Jun 30, 2016
    Role: Co-Investigator
    Targeting of Proteins into Peroxisomes
    NIH R01DK041737May 10, 1990 - Aug 31, 2022
    Role: Principal Investigator
    Targeting of Proteins into Peroxisomes
    NIH R56DK041737May 10, 1990 - Sep 24, 2014
    Role: Principal Investigator
    Targeting of proteins into peroxisomes
    NIH R37DK041737May 10, 1990 - Apr 30, 2014
    Role: Principal Investigator
    MECHANISMS OF GENE REGULATION AND TRANSFORMATION
    NIH R01CA044997Apr 1, 1987 - Mar 31, 1990
    Role: Principal Investigator
    MECHANISM FOR GENETIC RECOMBINATION IN MAMMALIAN CELLS
    NIH K04CA001062Jul 1, 1985 - Jun 30, 1990
    Role: Principal Investigator
    MECHANISM FOR DNA RECOMBINATION AND REPAIR
    NIH R01GM031253Jul 1, 1982 - Jun 30, 1996
    Role: Principal Investigator

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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Bulk and selective autophagy cooperate to remodel a fungal proteome in response to changing nutrient availability. bioRxiv. 2024 Sep 26. Telusma B, Farre JC, Cui DS, Subramani S, Davis JH. PMID: 39386609; PMCID: PMC11463512.
      View in: PubMed   Mentions:
    2. Automated, image-based quantification of peroxisome characteristics with perox-per-cell. Bioinformatics. 2024 Jul 13. Neal ML, Shukla N, Mast FD, Farré JC, Pacio TM, Raney-Plourde KE, Prasad S, Subramani S, Aitchison JD. PMID: 39001800; PMCID: PMC11269463.
      View in: PubMed   Mentions:    Fields:    
    3. Automated, image-based quantification of peroxisome characteristics with perox-per-cell. bioRxiv. 2024 Apr 12. Neal ML, Shukla N, Mast FD, Farré JC, Pacio TM, Raney-Plourde KE, Prasad S, Subramani S, Aitchison JD. PMID: 38645222; PMCID: PMC11030360.
      View in: PubMed   Mentions:
    4. Aeroplane wing, a new recessive autosomal phenotypic marker in the malaria vector, Anopheles stephensi Liston. Heliyon. 2024 Jan 15; 10(1):e23693. Ghosh C, Soumya M, Kumar N, Kumar R C, Joshi SG, Kumar S, Subramani S, Swain S. PMID: 38187285; PMCID: PMC10770597.
      View in: PubMed   Mentions:
    5. Convergent and divergent mechanisms of peroxisomal and mitochondrial division. J Cell Biol. 2023 09 04; 222(9). Subramani S, Shukla N, Farre JC. PMID: 37530713; PMCID: PMC10397058.
      View in: PubMed   Mentions: 1     Fields:    Translation:Cells
    6. Enrichment of phenotype among biological forms of Anopheles stephensi Liston through establishment of isofemale lines. Parasit Vectors. 2023 Feb 28; 16(1):79. Ghosh C, Kumar N, Kushwah RBS, M S, Joshi SG, Ramanjini CK, Alalamath T, Srinivasan S, Subramani S, Kumar S, Swain S. PMID: 36855157; PMCID: PMC9976541.
      View in: PubMed   Mentions: 2     Fields:    Translation:AnimalsPHPublic Health
    7. Identification of a TNF-TNFR-like system in malaria vectors (Anopheles stephensi) likely to influence Plasmodium resistance. Sci Rep. 2022 11 09; 12(1):19079. Srinivasan S, Ghosh C, Das S, Thakare A, Singh S, Ganesh A, Mahawar H, Jaisimha A, Krishna M, Chattopadhyay A, Borah R, Singh V, M S, Kumar N, Kumar S, Swain S, Subramani S. PMID: 36351999; PMCID: PMC9646898.
      View in: PubMed   Mentions: 4     Fields:    Translation:AnimalsPHPublic Health
    8. Author Correction: Hidden genomic features of an invasive malaria vector, Anopheles stephensi, revealed by a chromosome-level genome assembly. BMC Biol. 2022 May 02; 20(1):96. Chakraborty M, Ramaiah A, Adolfi A, Halas P, Kaduskar B, Ngo LT, Jayaprasad S, Paul K, Whadgar S, Srinivasan S, Subramani S, Bier E, James AA, Emerson JJ. PMID: 35501892; PMCID: PMC9059397.
      View in: PubMed   Mentions: 3     Fields:    
    9. OXPHOS deficiencies affect peroxisome proliferation by downregulating genes controlled by the SNF1 signaling pathway. Elife. 2022 04 25; 11. Farre JC, Carolino K, Devanneaux L, Subramani S. PMID: 35467529; PMCID: PMC9094750.
      View in: PubMed   Mentions: 3     Fields:    Translation:HumansAnimalsCells
    10. The genome trilogy of Anopheles stephensi, an urban malaria vector, reveals structure of a locus associated with adaptation to environmental heterogeneity. Sci Rep. 2022 03 04; 12(1):3610. Thakare A, Ghosh C, Alalamath T, Kumar N, Narang H, Whadgar S, Paul K, Shrotri S, Kumar S, Soumya M, Rao R, Chakraborty M, Choudhary B, Ghosh SK, Subramani S, Swain S, Srinivasan S. PMID: 35246568; PMCID: PMC8897464.
      View in: PubMed   Mentions: 7     Fields:    Translation:AnimalsPHPublic Health
    11. Recognition and Chaperoning by Pex19, Followed by Trafficking and Membrane Insertion of the Peroxisome Proliferation Protein, Pex11. Cells. 2022 01 04; 11(1). Zientara-Rytter KM, Mahalingam SS, Farré JC, Carolino K, Subramani S. PMID: 35011719; PMCID: PMC8750153.
      View in: PubMed   Mentions: 4     Fields:    Translation:HumansCells
    12. BiFC Method Based on Intraorganellar Protein Crowding Detects Oleate-Dependent Peroxisomal Targeting of Pichia pastoris Malate Dehydrogenase. Int J Mol Sci. 2021 May 05; 22(9). Farré JC, Li P, Subramani S. PMID: 34063066; PMCID: PMC8124512.
      View in: PubMed   Mentions: 2     Fields:    Translation:AnimalsCells
    13. Hidden genomic features of an invasive malaria vector, Anopheles stephensi, revealed by a chromosome-level genome assembly. BMC Biol. 2021 02 10; 19(1):28. Chakraborty M, Ramaiah A, Adolfi A, Halas P, Kaduskar B, Ngo LT, Jayaprasad S, Paul K, Whadgar S, Srinivasan S, Subramani S, Bier E, James AA, Emerson JJ. PMID: 33568145; PMCID: PMC7876825.
      View in: PubMed   Mentions: 18     Fields:    Translation:AnimalsPHPublic Health
    14. Rare Case Report of Closed Traumatic Dislocation of Second to Fifth Metatarsophalangeal Joints. Cureus. 2020 Nov 28; 12(11):e11745. Raj S, Subramani S, Babar SJ, Balaji MS, Anand V. PMID: 33403175; PMCID: PMC7773289.
      View in: PubMed   Mentions:
    15. A Near-Chromosome Level Genome Assembly of Anopheles stephensi. Front Genet. 2020; 11:565626. Chida AR, Ravi S, Jayaprasad S, Paul K, Saha J, Suresh C, Whadgar S, Kumar N, Rao K R, Ghosh C, Choudhary B, Subramani S, Srinivasan S. PMID: 33312190; PMCID: PMC7703621.
      View in: PubMed   Mentions: 10  
    16. Balancing the Opposing Principles That Govern Peroxisome Homeostasis. Trends Biochem Sci. 2021 03; 46(3):200-212. Mahalingam SS, Shukla N, Farré JC, Zientara-Rytter K, Subramani S. PMID: 33046344; PMCID: PMC7880872.
      View in: PubMed   Mentions: 14     Fields:    Translation:Cells
    17. Axis vertebral dimensions for safe screw placement: A CT normative data analysis. J Clin Orthop Trauma. 2020 Sep-Oct; 11(5):871-875. Pragash V, Douraiswami B, Subramani S. PMID: 32879573; PMCID: PMC7452170.
      View in: PubMed   Mentions: 1  
    18. Unprecedented clinical presentation of fungal spondylodiscitis as an extradural mass in an immunocompetent individual. J Clin Orthop Trauma. 2020 Sep-Oct; 11(5):942-946. Douraiswami B, Subramani S, Varman M. PMID: 32904184; PMCID: PMC7452353.
      View in: PubMed   Mentions: 2  
    19. Late-onset retinal degeneration pathology due to mutations in CTRP5 is mediated through HTRA1. Aging Cell. 2019 12; 18(6):e13011. Chekuri A, Zientara-Rytter K, Soto-Hermida A, Borooah S, Voronchikhina M, Biswas P, Kumar V, Goodsell D, Hayward C, Shaw P, Stanton C, Garland D, Subramani S, Ayyagari R. PMID: 31385385; PMCID: PMC6826137.
      View in: PubMed   Mentions: 13     Fields:    Translation:HumansAnimals
    20. Mechanistic Insights into the Role of Atg11 in Selective Autophagy. J Mol Biol. 2020 01 03; 432(1):104-122. Zientara-Rytter K, Subramani S. PMID: 31238043; PMCID: PMC6925662.
      View in: PubMed   Mentions: 36     Fields:    Translation:HumansAnimalsCells
    21. The autophagic degradation of cytosolic pools of peroxisomal proteins by a new selective pathway. Autophagy. 2020 01; 16(1):154-166. Wang X, Wang P, Zhang Z, Farré JC, Li X, Wang R, Xia Z, Subramani S, Ma C. PMID: 31007124; PMCID: PMC6984484.
      View in: PubMed   Mentions: 8     Fields:    Translation:AnimalsCells
    22. The Roles of Ubiquitin-Binding Protein Shuttles in the Degradative Fate of Ubiquitinated Proteins in the Ubiquitin-Proteasome System and Autophagy. Cells. 2019 01 10; 8(1). Zientara-Rytter K, Subramani S. PMID: 30634694; PMCID: PMC6357184.
      View in: PubMed   Mentions: 49     Fields:    Translation:HumansAnimalsCells
    23. Factors affecting compliance to hospital visit among clubfoot patients: A cross-sectional study from a tertiary referral clubfoot clinic in the developing country. J Orthop Surg (Hong Kong). 2019 Jan-Apr; 27(1):2309499019825598. Poudel RR, Kumar VS, Tiwari V, Subramani S, Khan SA. PMID: 30744526.
      View in: PubMed   Mentions: 6     Fields:    Translation:Humans
    24. Peroxisome biogenesis, membrane contact sites, and quality control. EMBO Rep. 2019 01; 20(1). Farré JC, Mahalingam SS, Proietto M, Subramani S. PMID: 30530632; PMCID: PMC6322382.
      View in: PubMed   Mentions: 62     Fields:    Translation:HumansCells
    25. TRIM37 deficiency induces autophagy through deregulating the MTORC1-TFEB axis. Autophagy. 2018; 14(9):1574-1585. Wang W, Xia Z, Farré JC, Subramani S. PMID: 29940807; PMCID: PMC6135569.
      View in: PubMed   Mentions: 20     Fields:    Translation:HumansCells
    26. AIM/LIR-based fluorescent sensors-new tools to monitor mAtg8 functions. Autophagy. 2018; 14(6):1074-1078. Zientara-Rytter K, Subramani S. PMID: 29749795; PMCID: PMC6103413.
      View in: PubMed   Mentions: 3     Fields:    Translation:HumansAnimalsCells
    27. Outcome of transforaminal lumbar interbody fusion in spondylolisthesis-A clinico-radiological correlation. J Orthop. 2018 Jun; 15(2):359-362. Balasubramanian VA, Douraiswami B, Subramani S. PMID: 29881153; PMCID: PMC5990121.
      View in: PubMed   Mentions: 1  
    28. Pex3 and Atg37 compete to regulate the interaction between the pexophagy receptor, Atg30, and the Hrr25 kinase. Autophagy. 2018; 14(3):368-384. Zientara-Rytter K, Ozeki K, Nazarko TY, Subramani S. PMID: 29260977; PMCID: PMC5915033.
      View in: PubMed   Mentions: 20     Fields:    Translation:HumansAnimals
    29. A rare cause of late onset neurological deficit in post tuberculous kyphotic deformity-case report. J Spine Surg. 2017 Dec; 3(4):740-743. Subramani S, Shetty AP, Kanna RM, Rajasekaran S. PMID: 29354759; PMCID: PMC5760418.
      View in: PubMed   Mentions: 3  
    30. A New Yeast Peroxin, Pex36, a Functional Homolog of Mammalian PEX16, Functions in the ER-to-Peroxisome Traffic of Peroxisomal Membrane Proteins. J Mol Biol. 2017 11 24; 429(23):3743-3762. Farré JC, Carolino K, Stasyk OV, Stasyk OG, Hodzic Z, Agrawal G, Till A, Proietto M, Cregg J, Sibirny AA, Subramani S. PMID: 29037759; PMCID: PMC5693695.
      View in: PubMed   Mentions: 13     Fields:    Translation:HumansAnimalsCells
    31. Role of PEX5 ubiquitination in maintaining peroxisome dynamics and homeostasis. Cell Cycle. 2017; 16(21):2037-2045. Wang W, Subramani S. PMID: 28933989; PMCID: PMC5731411.
      View in: PubMed   Mentions: 28     Fields:    Translation:HumansAnimalsCells
    32. TRIM37, a novel E3 ligase for PEX5-mediated peroxisomal matrix protein import. J Cell Biol. 2017 09 04; 216(9):2843-2858. Wang W, Xia ZJ, Farré JC, Subramani S. PMID: 28724525; PMCID: PMC5584156.
      View in: PubMed   Mentions: 35     Fields:    Translation:HumansAnimalsCells
    33. Functional regions of the peroxin Pex19 necessary for peroxisome biogenesis. J Biol Chem. 2017 07 07; 292(27):11547-11560. Agrawal G, Shang HH, Xia ZJ, Subramani S. PMID: 28526747; PMCID: PMC5500816.
      View in: PubMed   Mentions: 10     Fields:    Translation:AnimalsCells
    34. Active Interaction Mapping as a tool to elucidate hierarchical functions of biological processes. Autophagy. 2017 Jul 03; 13(7):1248-1249. Farré JC, Kramer M, Ideker T, Subramani S. PMID: 28486053; PMCID: PMC5529073.
      View in: PubMed   Mentions:    Fields:    Translation:Animals
    35. Active Interaction Mapping Reveals the Hierarchical Organization of Autophagy. Mol Cell. 2017 Feb 16; 65(4):761-774.e5. Kramer MH, Farré JC, Mitra K, Yu MK, Ono K, Demchak B, Licon K, Flagg M, Balakrishnan R, Cherry JM, Subramani S, Ideker T. PMID: 28132844; PMCID: PMC5439305.
      View in: PubMed   Mentions: 21     Fields:    Translation:HumansAnimals
    36. Ossified ligamentum flavum causing neurological deficit above the level of post-tuberculous kyphotic deformity. J Clin Orthop Trauma. 2017 Apr-Jun; 8(2):174-177. Subramani S, Shetty AP, Kanna RM, Shanmuganathan R. PMID: 28720997; PMCID: PMC5498738.
      View in: PubMed   Mentions: 2  
    37. Role of actin in shaping autophagosomes. Autophagy. 2016 12; 12(12):2512-2515. Zientara-Rytter K, Subramani S. PMID: 27723370; PMCID: PMC5173263.
      View in: PubMed   Mentions: 15     Fields:    Translation:HumansAnimalsCells
    38. Overview of the interactive task in BioCreative V. Database (Oxford). 2016; 2016. Wang Q, S Abdul S, Almeida L, Ananiadou S, Balderas-Martínez YI, Batista-Navarro R, Campos D, Chilton L, Chou HJ, Contreras G, Cooper L, Dai HJ, Ferrell B, Fluck J, Gama-Castro S, George N, Gkoutos G, Irin AK, Jensen LJ, Jimenez S, Jue TR, Keseler I, Madan S, Matos S, McQuilton P, Milacic M, Mort M, Natarajan J, Pafilis E, Pereira E, Rao S, Rinaldi F, Rothfels K, Salgado D, Silva RM, Singh O, Stefancsik R, Su CH, Subramani S, Tadepally HD, Tsaprouni L, Vasilevsky N, Wang X, Chatr-Aryamontri A, Laulederkind SJ, Matis-Mitchell S, McEntyre J, Orchard S, Pundir S, Rodriguez-Esteban R, Van Auken K, Lu Z, Schaeffer M, Wu CH, Hirschman L, Arighi CN. PMID: 27589961; PMCID: PMC5009325.
      View in: PubMed   Mentions: 22     Fields:    
    39. Mechanistic insights into selective autophagy pathways: lessons from yeast. Nat Rev Mol Cell Biol. 2016 09; 17(9):537-52. Farré JC, Subramani S. PMID: 27381245; PMCID: PMC5549613.
      View in: PubMed   Mentions: 186     Fields:    Translation:HumansAnimalsCells
    40. Autophagic degradation of peroxisomes in mammals. Biochem Soc Trans. 2016 04 15; 44(2):431-40. Zientara-Rytter K, Subramani S. PMID: 27068951; PMCID: PMC4958620.
      View in: PubMed   Mentions: 31     Fields:    Translation:HumansAnimalsCells
    41. Distinct requirements for intra-ER sorting and budding of peroxisomal membrane proteins from the ER. J Cell Biol. 2016 Feb 01; 212(3):335-48. Agrawal G, Fassas SN, Xia ZJ, Subramani S. PMID: 26833788; PMCID: PMC4748575.
      View in: PubMed   Mentions: 26     Fields:    Translation:AnimalsCells
    42. A mammalian pexophagy target. Nat Cell Biol. 2015 Nov; 17(11):1371-3. Subramani S. PMID: 26458245; PMCID: PMC4957398.
      View in: PubMed   Mentions: 10     Fields:    Translation:HumansAnimalsCells
    43. De novo peroxisome biogenesis: Evolving concepts and conundrums. Biochim Biophys Acta. 2016 May; 1863(5):892-901. Agrawal G, Subramani S. PMID: 26381541; PMCID: PMC4791208.
      View in: PubMed   Mentions: 49     Fields:    Translation:HumansAnimalsCells
    44. Peroxisomal Pex3 activates selective autophagy of peroxisomes via interaction with the pexophagy receptor Atg30. J Biol Chem. 2015 Mar 27; 290(13):8623-31. Burnett SF, Farré JC, Nazarko TY, Subramani S. PMID: 25694426; PMCID: PMC4375511.
      View in: PubMed   Mentions: 25     Fields:    Translation:AnimalsCells
    45. HPIminer: A text mining system for building and visualizing human protein interaction networks and pathways. J Biomed Inform. 2015 Apr; 54:121-31. Subramani S, Kalpana R, Monickaraj PM, Natarajan J. PMID: 25659452.
      View in: PubMed   Mentions: 6     Fields:    Translation:Humans
    46. Evolutionary trends and functional anatomy of the human expanded autophagy network. Autophagy. 2015; 11(9):1652-67. Till A, Saito R, Merkurjev D, Liu JJ, Syed GH, Kolnik M, Siddiqui A, Glas M, Scheffler B, Ideker T, Subramani S. PMID: 26103419; PMCID: PMC4590607.
      View in: PubMed   Mentions: 15     Fields:    Translation:HumansCells
    47. The role of autophagy during group B Streptococcus infection of blood-brain barrier endothelium. J Biol Chem. 2014 Dec 26; 289(52):35711-23. Cutting AS, Del Rosario Y, Mu R, Rodriguez A, Till A, Subramani S, Gottlieb RA, Doran KS. PMID: 25371213; PMCID: PMC4276841.
      View in: PubMed   Mentions: 35     Fields:    Translation:HumansAnimalsCells
    48. Prospective randomized trial comparing open reduction and internal fixation with minimally invasive reduction and percutaneous fixation in managing displaced intra-articular calcaneal fractures. Int Orthop. 2014 Dec; 38(12):2505-12. Sampath Kumar V, Marimuthu K, Subramani S, Sharma V, Bera J, Kotwal P. PMID: 25139716.
      View in: PubMed   Mentions: 21     Fields:    Translation:Humans
    49. The unique degradation pathway of the PTS2 receptor, Pex7, is dependent on the PTS receptor/coreceptor, Pex5 and Pex20. Mol Biol Cell. 2014 Sep 01; 25(17):2634-43. Hagstrom D, Ma C, Guha-Polley S, Subramani S. PMID: 25009284; PMCID: PMC4148252.
      View in: PubMed   Mentions: 11     Fields:    Translation:AnimalsCells
    50. Evaluation of online health information on clubfoot using the DISCERN tool. J Pediatr Orthop B. 2014 Mar; 23(2):135-8. Kumar VS, Subramani S, Veerapan S, Khan SA. PMID: 24048196.
      View in: PubMed   Mentions: 3     Fields:    Translation:Humans
    51. Defects in GABA metabolism affect selective autophagy pathways and are alleviated by mTOR inhibition. EMBO Mol Med. 2014 04; 6(4):551-66. Lakhani R, Vogel KR, Till A, Liu J, Burnett SF, Gibson KM, Subramani S. PMID: 24578415; PMCID: PMC3992080.
      View in: PubMed   Mentions: 41     Fields:    Translation:HumansAnimals
    52. Peroxisomal Atg37 binds Atg30 or palmitoyl-CoA to regulate phagophore formation during pexophagy. J Cell Biol. 2014 Feb 17; 204(4):541-57. Nazarko TY, Ozeki K, Till A, Ramakrishnan G, Lotfi P, Yan M, Subramani S. PMID: 24535825; PMCID: PMC3926955.
      View in: PubMed   Mentions: 60     Fields:    Translation:HumansAnimalsCells
    53. A hybrid named entity tagger for tagging human proteins/genes. Int J Data Min Bioinform. 2014; 10(3):315-28. Raja K, Subramani S, Natarajan J. PMID: 25946866.
      View in: PubMed   Mentions: 8     Fields:    Translation:Humans
    54. Hepatitis B virus disrupts mitochondrial dynamics: induces fission and mitophagy to attenuate apoptosis. PLoS Pathog. 2013; 9(12):e1003722. Kim SJ, Khan M, Quan J, Till A, Subramani S, Siddiqui A. PMID: 24339771; PMCID: PMC3855539.
      View in: PubMed   Mentions: 177     Fields:    Translation:HumansCells
    55. ProNormz--an integrated approach for human proteins and protein kinases normalization. J Biomed Inform. 2014 Feb; 47:131-8. Subramani S, Raja K, Natarajan J. PMID: 24144801.
      View in: PubMed   Mentions: 4     Fields:    Translation:HumansCells
    56. Emerging role of the endoplasmic reticulum in peroxisome biogenesis. Front Physiol. 2013 Oct 08; 4:286. Agrawal G, Subramani S. PMID: 24115935; PMCID: PMC3792350.
      View in: PubMed   Mentions: 26  
    57. Redox-regulated cargo binding and release by the peroxisomal targeting signal receptor, Pex5. J Biol Chem. 2013 Sep 20; 288(38):27220-27231. Ma C, Hagstrom D, Polley SG, Subramani S. PMID: 23902771; PMCID: PMC3779719.
      View in: PubMed   Mentions: 38     Fields:    Translation:AnimalsCells
    58. Autophagy receptor CALCOCO2/NDP52 takes center stage in Crohn disease. Autophagy. 2013 Aug; 9(8):1256-7. Till A, Lipinski S, Ellinghaus D, Mayr G, Subramani S, Rosenstiel P, Franke A. PMID: 23820297; PMCID: PMC3748200.
      View in: PubMed   Mentions: 17     Fields:    Translation:Humans
    59. Association between variants of PRDM1 and NDP52 and Crohn's disease, based on exome sequencing and functional studies. Gastroenterology. 2013 Aug; 145(2):339-47. Ellinghaus D, Zhang H, Zeissig S, Lipinski S, Till A, Jiang T, Stade B, Bromberg Y, Ellinghaus E, Keller A, Rivas MA, Skieceviciene J, Doncheva NT, Liu X, Liu Q, Jiang F, Forster M, Mayr G, Albrecht M, Häsler R, Boehm BO, Goodall J, Berzuini CR, Lee J, Andersen V, Vogel U, Kupcinskas L, Kayser M, Krawczak M, Nikolaus S, Weersma RK, Ponsioen CY, Sans M, Wijmenga C, Strachan DP, McArdle WL, Vermeire S, Rutgeerts P, Sanderson JD, Mathew CG, Vatn MH, Wang J, Nöthen MM, Duerr RH, Büning C, Brand S, Glas J, Winkelmann J, Illig T, Latiano A, Annese V, Halfvarson J, D'Amato M, Daly MJ, Nothnagel M, Karlsen TH, Subramani S, Rosenstiel P, Schreiber S, Parkes M, Franke A. PMID: 23624108; PMCID: PMC3753067.
      View in: PubMed   Mentions: 91     Fields:    Translation:Humans
    60. Phosphorylation of mitophagy and pexophagy receptors coordinates their interaction with Atg8 and Atg11. EMBO Rep. 2013 May; 14(5):441-9. Farré JC, Burkenroad A, Burnett SF, Subramani S. PMID: 23559066; PMCID: PMC3642380.
      View in: PubMed   Mentions: 85     Fields:    Translation:AnimalsCells
    61. Unique requirements for mono- and polyubiquitination of the peroxisomal targeting signal co-receptor, Pex20. J Biol Chem. 2013 Mar 08; 288(10):7230-40. Liu X, Subramani S. PMID: 23344950; PMCID: PMC3591631.
      View in: PubMed   Mentions: 25     Fields:    Translation:AnimalsCells
    62. Non-autophagic roles of autophagy-related proteins. EMBO Rep. 2013 Feb; 14(2):143-51. Subramani S, Malhotra V. PMID: 23337627; PMCID: PMC3566844.
      View in: PubMed   Mentions: 137     Fields:    Translation:HumansAnimalsCells
    63. An overview of the BioCreative 2012 Workshop Track III: interactive text mining task. Database (Oxford). 2013; 2013:bas056. Arighi CN, Carterette B, Cohen KB, Krallinger M, Wilbur WJ, Fey P, Dodson R, Cooper L, Van Slyke CE, Dahdul W, Mabee P, Li D, Harris B, Gillespie M, Jimenez S, Roberts P, Matthews L, Becker K, Drabkin H, Bello S, Licata L, Chatr-aryamontri A, Schaeffer ML, Park J, Haendel M, Van Auken K, Li Y, Chan J, Muller HM, Cui H, Balhoff JP, Chi-Yang Wu J, Lu Z, Wei CH, Tudor CO, Raja K, Subramani S, Natarajan J, Cejuela JM, Dubey P, Wu C. PMID: 23327936; PMCID: PMC3625048.
      View in: PubMed   Mentions: 48     Fields:    Translation:Humans
    64. PPInterFinder--a mining tool for extracting causal relations on human proteins from literature. Database (Oxford). 2013; 2013:bas052. Raja K, Subramani S, Natarajan J. PMID: 23325628; PMCID: PMC3548331.
      View in: PubMed   Mentions: 21     Fields:    Translation:Humans
    65. Recent advances in peroxisomal matrix protein import. Curr Opin Cell Biol. 2012 Aug; 24(4):484-9. Liu X, Ma C, Subramani S. PMID: 22683191; PMCID: PMC3425728.
      View in: PubMed   Mentions: 30     Fields:    Translation:HumansCells
    66. Pexophagy: the selective degradation of peroxisomes. Int J Cell Biol. 2012; 2012:512721. Till A, Lakhani R, Burnett SF, Subramani S. PMID: 22536249; PMCID: PMC3320016.
      View in: PubMed   Mentions: 72  
    67. Phosphorylation-dependent Pex11p and Fis1p interaction regulates peroxisome division. Mol Biol Cell. 2012 Apr; 23(7):1307-15. Joshi S, Agrawal G, Subramani S. PMID: 22337771; PMCID: PMC3315806.
      View in: PubMed   Mentions: 24     Fields:    Translation:AnimalsCells
    68. Cell-free sorting of peroxisomal membrane proteins from the endoplasmic reticulum. Proc Natl Acad Sci U S A. 2011 May 31; 108(22):9113-8. Agrawal G, Joshi S, Subramani S. PMID: 21576455; PMCID: PMC3107335.
      View in: PubMed   Mentions: 53     Fields:    Translation:AnimalsCells
    69. Peroxisome assembly: matrix and membrane protein biogenesis. J Cell Biol. 2011 Apr 04; 193(1):7-16. Ma C, Agrawal G, Subramani S. PMID: 21464226; PMCID: PMC3082194.
      View in: PubMed   Mentions: 85     Fields:    Translation:HumansAnimalsCells
    70. Atg35, a micropexophagy-specific protein that regulates micropexophagic apparatus formation in Pichia pastoris. Autophagy. 2011 Apr; 7(4):375-85. Nazarko VY, Nazarko TY, Farré JC, Stasyk OV, Warnecke D, Ulaszewski S, Cregg JM, Sibirny AA, Subramani S. PMID: 21169734; PMCID: PMC3127218.
      View in: PubMed   Mentions: 19     Fields:    Translation:AnimalsCells
    71. Rallying the exocyst as an autophagy scaffold. Cell. 2011 Jan 21; 144(2):172-4. Farré JC, Subramani S. PMID: 21241888; PMCID: PMC3030914.
      View in: PubMed   Mentions: 8     Fields:    
    72. Autophagy: a broad role in unconventional protein secretion? Trends Cell Biol. 2011 Feb; 21(2):67-73. Manjithaya R, Subramani S. PMID: 20961762; PMCID: PMC3025270.
      View in: PubMed   Mentions: 46     Fields:    Translation:HumansAnimalsCells
    73. Role of autophagy in unconventional protein secretion. Autophagy. 2010 Jul; 6(5):650-1. Manjithaya R, Subramani S. PMID: 20473033; PMCID: PMC3677939.
      View in: PubMed   Mentions: 18     Fields:    Translation:Animals
    74. A balancing act for autophagin. J Clin Invest. 2010 Jul; 120(7):2273-6. Till A, Subramani S. PMID: 20577044; PMCID: PMC2898612.
      View in: PubMed   Mentions: 8     Fields:    Translation:HumansAnimals
    75. A yeast MAPK cascade regulates pexophagy but not other autophagy pathways. J Cell Biol. 2010 Apr 19; 189(2):303-10. Manjithaya R, Jain S, Farré JC, Subramani S. PMID: 20385774; PMCID: PMC2856896.
      View in: PubMed   Mentions: 38     Fields:    Translation:AnimalsCells
    76. Unconventional secretion of Pichia pastoris Acb1 is dependent on GRASP protein, peroxisomal functions, and autophagosome formation. J Cell Biol. 2010 Feb 22; 188(4):537-46. Manjithaya R, Anjard C, Loomis WF, Subramani S. PMID: 20156962; PMCID: PMC2828923.
      View in: PubMed   Mentions: 191     Fields:    Translation:AnimalsCells
    77. Molecular mechanism and physiological role of pexophagy. FEBS Lett. 2010 Apr 02; 584(7):1367-73. Manjithaya R, Nazarko TY, Farré JC, Subramani S. PMID: 20083110; PMCID: PMC2843806.
      View in: PubMed   Mentions: 66     Fields:    Translation:AnimalsCells
    78. Roles of Pichia pastoris Uvrag in vacuolar protein sorting and the phosphatidylinositol 3-kinase complex in phagophore elongation in autophagy pathways. Autophagy. 2010 Jan; 6(1):86-99. Farré JC, Mathewson RD, Manjithaya R, Subramani S. PMID: 19946209; PMCID: PMC2945526.
      View in: PubMed   Mentions: 13     Fields:    Translation:AnimalsCells
    79. Peroxisome size provides insights into the function of autophagy-related proteins. Mol Biol Cell. 2009 Sep; 20(17):3828-39. Nazarko TY, Farré JC, Subramani S. PMID: 19605559; PMCID: PMC2735482.
      View in: PubMed   Mentions: 42     Fields:    Translation:HumansAnimalsCells
    80. The peroxisomal matrix import of Pex8p requires only PTS receptors and Pex14p. Mol Biol Cell. 2009 Aug; 20(16):3680-9. Ma C, Schumann U, Rayapuram N, Subramani S. PMID: 19570913; PMCID: PMC2777928.
      View in: PubMed   Mentions: 28     Fields:    Translation:AnimalsCells
    81. Peroxisome matrix and membrane protein biogenesis. IUBMB Life. 2009 Jul; 61(7):713-22. Ma C, Subramani S. PMID: 19455563; PMCID: PMC2712931.
      View in: PubMed   Mentions: 21     Fields:    Translation:HumansCells
    82. Turnover of organelles by autophagy in yeast. Curr Opin Cell Biol. 2009 Aug; 21(4):522-30. Farré JC, Krick R, Subramani S, Thumm M. PMID: 19515549; PMCID: PMC2725217.
      View in: PubMed   Mentions: 56     Fields:    Translation:AnimalsCells
    83. Special delivery from mitochondria to peroxisomes. Trends Cell Biol. 2008 Jun; 18(6):253-6. Schumann U, Subramani S. PMID: 18468897; PMCID: PMC3697091.
      View in: PubMed   Mentions: 30     Fields:    Translation:HumansAnimalsCells
    84. Activity versus peroxisomal targeting of PerCR. Structure. 2008 Mar; 16(3):331-2. Baker ME, Subramani S. PMID: 18334204.
      View in: PubMed   Mentions:    Fields:    Translation:HumansAnimalsCells
    85. PpAtg30 tags peroxisomes for turnover by selective autophagy. Dev Cell. 2008 Mar; 14(3):365-76. Farré JC, Manjithaya R, Mathewson RD, Subramani S. PMID: 18331717; PMCID: PMC3763908.
      View in: PubMed   Mentions: 180     Fields:    Translation:AnimalsCells
    86. Dysferlin domain-containing proteins, Pex30p and Pex31p, localized to two compartments, control the number and size of oleate-induced peroxisomes in Pichia pastoris. Mol Biol Cell. 2008 Mar; 19(3):885-98. Yan M, Rachubinski DA, Joshi S, Rachubinski RA, Subramani S. PMID: 18094040; PMCID: PMC2262989.
      View in: PubMed   Mentions: 40     Fields:    Translation:AnimalsCells
    87. A ubiquitin-like protein involved in membrane fusion. Cell. 2007 Jul 13; 130(1):18-20. Subramani S, Farré JC. PMID: 17632052.
      View in: PubMed   Mentions: 6     Fields:    Translation:AnimalsCells
    88. Autophagy-related pathways and specific role of sterol glucoside in yeasts. Autophagy. 2007 May-Jun; 3(3):263-5. Nazarko TY, Farré JC, Polupanov AS, Sibirny AA, Subramani S. PMID: 17329963.
      View in: PubMed   Mentions: 7     Fields:    Translation:AnimalsCells
    89. A cytoplasm to vacuole targeting pathway in P. pastoris. Autophagy. 2007 May-Jun; 3(3):230-4. Farré JC, Vidal J, Subramani S. PMID: 17329961.
      View in: PubMed   Mentions: 17     Fields:    Translation:AnimalsCells
    90. A conserved cysteine residue of Pichia pastoris Pex20p is essential for its recycling from the peroxisome to the cytosol. J Biol Chem. 2007 Mar 09; 282(10):7424-30. Léon S, Subramani S. PMID: 17209040; PMCID: PMC3682499.
      View in: PubMed   Mentions: 33     Fields:    Translation:AnimalsCells
    91. Localization of proteins and organelles using fluorescence microscopy. Methods Mol Biol. 2007; 389:239-50. Farre JC, Shirahama-Noda K, Zhang L, Booher K, Subramani S. PMID: 17951647.
      View in: PubMed   Mentions: 2     Fields:    Translation:AnimalsCells
    92. Characterization of protein-protein interactions: application to the understanding of peroxisome biogenesis. Methods Mol Biol. 2007; 389:219-38. Leon S, Suriapranata I, Yan M, Rayapuram N, Patel A, Subramani S. PMID: 17951646.
      View in: PubMed   Mentions: 1     Fields:    Translation:AnimalsCells
    93. The requirement of sterol glucoside for pexophagy in yeast is dependent on the species and nature of peroxisome inducers. Mol Biol Cell. 2007 Jan; 18(1):106-18. Nazarko TY, Polupanov AS, Manjithaya RR, Subramani S, Sibirny AA. PMID: 17079731; PMCID: PMC1751328.
      View in: PubMed   Mentions: 25     Fields:    Translation:AnimalsCells
    94. Uniqueness of the mechanism of protein import into the peroxisome matrix: transport of folded, co-factor-bound and oligomeric proteins by shuttling receptors. Biochim Biophys Acta. 2006 Dec; 1763(12):1552-64. Léon S, Goodman JM, Subramani S. PMID: 17011644.
      View in: PubMed   Mentions: 52     Fields:    Translation:HumansCells
    95. The importomer--a peroxisomal membrane complex involved in protein translocation into the peroxisome matrix. Biochim Biophys Acta. 2006 Dec; 1763(12):1613-9. Rayapuram N, Subramani S. PMID: 17027097.
      View in: PubMed   Mentions: 20     Fields:    Translation:Cells
    96. Mxr1p, a key regulator of the methanol utilization pathway and peroxisomal genes in Pichia pastoris. Mol Cell Biol. 2006 Feb; 26(3):883-97. Lin-Cereghino GP, Godfrey L, de la Cruz BJ, Johnson S, Khuongsathiene S, Tolstorukov I, Yan M, Lin-Cereghino J, Veenhuis M, Subramani S, Cregg JM. PMID: 16428444; PMCID: PMC1347016.
      View in: PubMed   Mentions: 64     Fields:    Translation:AnimalsCells
    97. Atg28, a novel coiled-coil protein involved in autophagic degradation of peroxisomes in the methylotrophic yeast Pichia pastoris. Autophagy. 2006 Jan-Mar; 2(1):30-8. Stasyk OV, Stasyk OG, Mathewson RD, Farré JC, Nazarko VY, Krasovska OS, Subramani S, Cregg JM, Sibirny AA. PMID: 16874081.
      View in: PubMed   Mentions: 17     Fields:    Translation:AnimalsCells
    98. Dynamics of the peroxisomal import cycle of PpPex20p: ubiquitin-dependent localization and regulation. J Cell Biol. 2006 Jan 02; 172(1):67-78. Léon S, Zhang L, McDonald WH, Yates J, Cregg JM, Subramani S. PMID: 16390998; PMCID: PMC2063535.
      View in: PubMed   Mentions: 43     Fields:    Translation:AnimalsCells
    99. Two independent pathways traffic the intraperoxisomal peroxin PpPex8p into peroxisomes: mechanism and evolutionary implications. Mol Biol Cell. 2006 Feb; 17(2):690-9. Zhang L, Léon S, Subramani S. PMID: 16319171; PMCID: PMC1356580.
      View in: PubMed   Mentions: 16     Fields:    Translation:AnimalsCells
    100. The control of peroxisome number and size during division and proliferation. Curr Opin Cell Biol. 2005 Aug; 17(4):376-83. Yan M, Rayapuram N, Subramani S. PMID: 15978793.
      View in: PubMed   Mentions: 53     Fields:    Translation:HumansAnimalsCells
    101. Peroxisome turnover by micropexophagy: an autophagy-related process. Trends Cell Biol. 2004 Sep; 14(9):515-23. Farré JC, Subramani S. PMID: 15350980.
      View in: PubMed   Mentions: 56     Fields:    Translation:HumansAnimalsCells
    102. A unified nomenclature for yeast autophagy-related genes. Dev Cell. 2003 Oct; 5(4):539-45. Klionsky DJ, Cregg JM, Dunn WA, Emr SD, Sakai Y, Sandoval IV, Sibirny A, Subramani S, Thumm M, Veenhuis M, Ohsumi Y. PMID: 14536056.
      View in: PubMed   Mentions: 510     Fields:    Translation:Animals
    103. Peroxisome remnants in pex3delta cells and the requirement of Pex3p for interactions between the peroxisomal docking and translocation subcomplexes. Traffic. 2002 Aug; 3(8):560-74. Hazra PP, Suriapranata I, Snyder WB, Subramani S. PMID: 12121419.
      View in: PubMed   Mentions: 39     Fields:    Translation:AnimalsCells
    104. Hitchhiking fads en route to peroxisomes. J Cell Biol. 2002 Feb 04; 156(3):415-7. Subramani S. PMID: 11827979; PMCID: PMC2173331.
      View in: PubMed   Mentions: 7     Fields:    Translation:HumansAnimalsCells
    105. Import of peroxisomal matrix and membrane proteins. Annu Rev Biochem. 2000; 69:399-418. Subramani S, Koller A, Snyder WB. PMID: 10966464.
      View in: PubMed   Mentions: 71     Fields:    Translation:HumansCells
    106. Protein translocation into peroxisomes. J Biol Chem. 1996 Dec 20; 271(51):32483-6. Subramani S. PMID: 8955066.
      View in: PubMed   Mentions: 20     Fields:    Translation:AnimalsCells
    107. Convergence of model systems for peroxisome biogenesis. Curr Opin Cell Biol. 1996 Aug; 8(4):513-8. Subramani S. PMID: 8791450.
      View in: PubMed   Mentions: 8     Fields:    Translation:HumansCells
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