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    Jens Lykke-andersen

    TitleProfessor
    SchoolUniversity of California, San Diego
    DepartmentMolecular Biology
    Address9500 Gilman Drive #0322
    CA La Jolla 92093
    Phone858-822-3659
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      Collapse Research 
      Collapse Research Activities and Funding
      Mechanisms of human RNA turnover and quality control
      NIH/NIGMS R35GM118069Jun 1, 2016 - May 31, 2021
      Role: Principal Investigator
      Mechanisms of mRNP remodeling in mRNA turnover
      NIH/NIGMS R01GM099717Feb 1, 2012 - Jan 31, 2016
      Role: Principal Investigator
      Mechanisms of activation of human mRNA decapping
      NIH/NIGMS R01GM077243Aug 13, 2007 - May 31, 2017
      Role: Principal Investigator
      Deadenylation in Mammalian mRNA Turnover
      NIH/NIGMS R01GM066811Apr 1, 2004 - Mar 31, 2010
      Role: Principal Investigator

      Collapse Bibliographic 
      Collapse Publications
      Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help.
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      1. Lardelli RM, Schaffer AE, Eggens VR, Zaki MS, Grainger S, Sathe S, Van Nostrand EL, Schlachetzki Z, Rosti B, Akizu N, Scott E, Silhavy JL, Heckman LD, Rosti RO, Dikoglu E, Gregor A, Guemez-Gamboa A, Musaev D, Mande R, Widjaja A, Shaw TL, Markmiller S, Marin-Valencia I, Davies JH, de Meirleir L, Kayserili H, Altunoglu U, Freckmann ML, Warwick L, Chitayat D, Blaser S, Çaglayan AO, Bilguvar K, Per H, Fagerberg C, Christesen HT, Kibaek M, Aldinger KA, Manchester D, Matsumoto N, Muramatsu K, Saitsu H, Shiina M, Ogata K, Foulds N, Dobyns WB, Chi NC, Traver D, Spaccini L, Bova SM, Gabriel SB, Gunel M, Valente EM, Nassogne MC, Bennett EJ, Yeo GW, Baas F, Lykke-Andersen J, Gleeson JG. Biallelic mutations in the 3' exonuclease TOE1 cause pontocerebellar hypoplasia and uncover a role in snRNA processing. Nat Genet. 2017 Jan 16. PMID: 28092684.
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      2. D'Lima NG, Ma J, Winkler L, Chu Q, Loh KH, Corpuz EO, Budnik BA, Lykke-Andersen J, Saghatelian A, Slavoff SA. A human microprotein that interacts with the mRNA decapping complex. Nat Chem Biol. 2016 Dec 05. PMID: 27918561.
        View in: PubMed
      3. Martinez FJ, Pratt GA, Van Nostrand EL, Batra R, Huelga SC, Kapeli K, Freese P, Chun SJ, Ling K, Gelboin-Burkhart C, Fijany L, Wang HC, Nussbacher JK, Broski SM, Kim HJ, Lardelli R, Sundararaman B, Donohue JP, Javaherian A, Lykke-Andersen J, Finkbeiner S, Bennett F, Ares M, Burge CB, Taylor JP, Rigo F, Yeo GW. Protein-RNA Networks Regulated by Normal and ALS-Associated Mutant HNRNPA2B1 in the Nervous System. Neuron. 2016 Oct 13. PMID: 27773581.
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      4. Arribas-Layton M, Dennis J, Bennett EJ, Damgaard CK, Lykke-Andersen J. The C-Terminal RGG Domain of Human Lsm4 Promotes Processing Body Formation Stimulated by Arginine Dimethylation. Mol Cell Biol. 2016 Sep 1; 36(17):2226-35. PMID: 27247266.
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      5. Durand S, Franks TM, Lykke-Andersen J. Hyperphosphorylation amplifies UPF1 activity to resolve stalls in nonsense-mediated mRNA decay. Nat Commun. 2016; 7:12434. PMID: 27511142.
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      6. Fu R, Olsen MT, Webb K, Bennett EJ, Lykke-Andersen J. Recruitment of the 4EHP-GYF2 cap-binding complex to tetraproline motifs of tristetraprolin promotes repression and degradation of mRNAs with AU-rich elements. RNA. 2016 Mar; 22(3):373-82. PMID: 26763119.
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      7. Wang Y, Arribas-Layton M, Chen Y, Lykke-Andersen J, Sen GL. DDX6 Orchestrates Mammalian Progenitor Function through the mRNA Degradation and Translation Pathways. Mol Cell. 2015 Oct 1; 60(1):118-30. PMID: 26412305.
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      8. Lee SR, Pratt GA, Martinez FJ, Yeo GW, Lykke-Andersen J. Target Discrimination in Nonsense-Mediated mRNA Decay Requires Upf1 ATPase Activity. Mol Cell. 2015 Aug 6; 59(3):413-25. PMID: 26253027.
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      9. Erickson SL, Corpuz EO, Maloy JP, Fillman C, Webb K, Bennett EJ, Lykke-Andersen J. Competition between Decapping Complex Formation and Ubiquitin-Mediated Proteasomal Degradation Controls Human Dcp2 Decapping Activity. Mol Cell Biol. 2015 Jun 15; 35(12):2144-53. PMID: 25870104.
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      10. Hausburg MA, Doles JD, Clement SL, Cadwallader AB, Hall MN, Blackshear PJ, Lykke-Andersen J, Olwin BB. Post-transcriptional regulation of satellite cell quiescence by TTP-mediated mRNA decay. Elife. 2015; 4. PMID: 25815583.
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      11. Toma KG, Rebbapragada I, Durand S, Lykke-Andersen J. Identification of elements in human long 3' UTRs that inhibit nonsense-mediated decay. RNA. 2015 May; 21(5):887-97. PMID: 25805855.
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      12. Reznik B, Clement SL, Lykke-Andersen J. hnRNP F Complexes with Tristetraprolin and Stimulates ARE-mRNA Decay. PLoS One. 2014; 9(6):e100992. PMID: 24978456.
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      13. Lykke-Andersen J, Bennett EJ. Quality control: Protecting the proteome: Eukaryotic cotranslational quality control pathways. J Cell Biol. 2014 Feb 17; 204(4):467-76. PMID: 24535822.
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      14. Lee SR, Lykke-Andersen J. Emerging roles for ribonucleoprotein modification and remodeling in controlling RNA fate. Trends Cell Biol. 2013 Oct; 23(10):504-10. PMID: 23756094.
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      15. Durand S, Lykke-Andersen J. Nonsense-mediated mRNA decay occurs during eIF4F-dependent translation in human cells. Nat Struct Mol Biol. 2013 Jun; 20(6):702-9. PMID: 23665580.
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      16. Damgaard CK, Lykke-Andersen J. Regulation of ARE-mRNA Stability by Cellular Signaling: Implications for Human Cancer. Cancer Treat Res. 2013; 158:153-80. PMID: 24222358.
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      17. Arribas-Layton M, Wu D, Lykke-Andersen J, Song H. Structural and functional control of the eukaryotic mRNA decapping machinery. Biochim Biophys Acta. 2013 Jun-Jul; 1829(6-7):580-9. PMID: 23287066.
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      18. Brannan K, Kim H, Erickson B, Glover-Cutter K, Kim S, Fong N, Kiemele L, Hansen K, Davis R, Lykke-Andersen J, Bentley DL. mRNA decapping factors and the exonuclease Xrn2 function in widespread premature termination of RNA polymerase II transcription. Mol Cell. 2012 May 11; 46(3):311-24. PMID: 22483619.
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      19. Damgaard CK, Lykke-Andersen J. Translational coregulation of 5'TOP mRNAs by TIA-1 and TIAR. Genes Dev. 2011 Oct 1; 25(19):2057-68. PMID: 21979918.
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      20. Durand S, Lykke-Andersen J. SnapShot: Nonsense-mediated mRNA decay. Cell. 2011 Apr 15; 145(2):324-324.e2. PMID: 21496649.
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      21. Erickson SL, Lykke-Andersen J. Cytoplasmic mRNP granules at a glance. J Cell Sci. 2011 Feb 1; 124(Pt 3):293-7. PMID: 21242308.
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      22. Franks TM, Singh G, Lykke-Andersen J. Upf1 ATPase-dependent mRNP disassembly is required for completion of nonsense- mediated mRNA decay. Cell. 2010 Dec 10; 143(6):938-50. PMID: 21145460.
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      23. Reznik B, Lykke-Andersen J. Regulated and quality-control mRNA turnover pathways in eukaryotes. Biochem Soc Trans. 2010 Dec; 38(6):1506-10. PMID: 21118116.
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      24. Clement SL, Scheckel C, Stoecklin G, Lykke-Andersen J. Phosphorylation of tristetraprolin by MK2 impairs AU-rich element mRNA decay by preventing deadenylase recruitment. Mol Cell Biol. 2011 Jan; 31(2):256-66. PMID: 21078877.
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      25. Mühlemann O, Lykke-Andersen J. How and where are nonsense mRNAs degraded in mammalian cells? RNA Biol. 2010 Jan-Feb; 7(1):28-32. PMID: 20023408.
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      26. Rebbapragada I, Lykke-Andersen J. Execution of nonsense-mediated mRNA decay: what defines a substrate? Curr Opin Cell Biol. 2009 Jun; 21(3):394-402. PMID: 19359157.
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      27. Franks TM, Lykke-Andersen J. The control of mRNA decapping and P-body formation. Mol Cell. 2008 Dec 5; 32(5):605-15. PMID: 19061636.
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      28. Singh G, Rebbapragada I, Lykke-Andersen J. A competition between stimulators and antagonists of Upf complex recruitment governs human nonsense-mediated mRNA decay. PLoS Biol. 2008 Apr 29; 6(4):e111. PMID: 18447585.
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      29. Clement SL, Lykke-Andersen J. A tethering approach to study proteins that activate mRNA turnover in human cells. Methods Mol Biol. 2008; 419:121-33. PMID: 18369979.
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      30. Singh G, Jakob S, Kleedehn MG, Lykke-Andersen J. Communication with the exon-junction complex and activation of nonsense-mediated decay by human Upf proteins occur in the cytoplasm. Mol Cell. 2007 Sep 7; 27(5):780-92. PMID: 17803942.
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      31. Franks TM, Lykke-Andersen J. TTP and BRF proteins nucleate processing body formation to silence mRNAs with AU-rich elements. Genes Dev. 2007 Mar 15; 21(6):719-35. PMID: 17369404.
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      32. Wagner E, Clement SL, Lykke-Andersen J. An unconventional human Ccr4-Caf1 deadenylase complex in nuclear cajal bodies. Mol Cell Biol. 2007 Mar; 27(5):1686-95. PMID: 17178830.
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      33. Clement SL, Lykke-Andersen J. No mercy for messages that mess with the ribosome. Nat Struct Mol Biol. 2006 Apr; 13(4):299-301. PMID: 16715045.
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      34. Fenger-Grøn M, Fillman C, Norrild B, Lykke-Andersen J. Multiple processing body factors and the ARE binding protein TTP activate mRNA decapping. Mol Cell. 2005 Dec 22; 20(6):905-15. PMID: 16364915.
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      35. Weischenfeldt J, Lykke-Andersen J, Porse B. Messenger RNA surveillance: neutralizing natural nonsense. Curr Biol. 2005 Jul 26; 15(14):R559-62. PMID: 16051166.
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      36. Kedersha N, Stoecklin G, Ayodele M, Yacono P, Lykke-Andersen J, Fritzler MJ, Scheuner D, Kaufman RJ, Golan DE, Anderson P. Stress granules and processing bodies are dynamically linked sites of mRNP remodeling. J Cell Biol. 2005 Jun 20; 169(6):871-84. PMID: 15967811.
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      37. Fillman C, Lykke-Andersen J. RNA decapping inside and outside of processing bodies. Curr Opin Cell Biol. 2005 Jun; 17(3):326-31. PMID: 15901504.
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      38. Lykke-Andersen J, Wagner E. Recruitment and activation of mRNA decay enzymes by two ARE-mediated decay activation domains in the proteins TTP and BRF-1. Genes Dev. 2005 Feb 1; 19(3):351-61. PMID: 15687258.
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      39. Lykke-Andersen J. Making structural sense of nonsense-mediated decay. Nat Struct Mol Biol. 2004 Apr; 11(4):305-6. PMID: 15048104.
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      40. Nielsen J, Adolph SK, Rajpert-De Meyts E, Lykke-Andersen J, Koch G, Christiansen J, Nielsen FC. Nuclear transit of human zipcode-binding protein IMP1. Biochem J. 2003 Dec 1; 376(Pt 2):383-91. PMID: 12921532.
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      41. Singh G, Lykke-Andersen J. New insights into the formation of active nonsense-mediated decay complexes. Trends Biochem Sci. 2003 Sep; 28(9):464-6. PMID: 13678954.
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      42. Lykke-Andersen J. Identification of a human decapping complex associated with hUpf proteins in nonsense-mediated decay. Mol Cell Biol. 2002 Dec; 22(23):8114-21. PMID: 12417715.
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      43. Wagner E, Lykke-Andersen J. mRNA surveillance: the perfect persist. J Cell Sci. 2002 Aug 1; 115(Pt 15):3033-8. PMID: 12118059.
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      44. Lykke-Andersen J, Shu MD, Steitz JA. Communication of the position of exon-exon junctions to the mRNA surveillance machinery by the protein RNPS1. Science. 2001 Sep 7; 293(5536):1836-9. PMID: 11546874.
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      45. Lykke-Andersen J. mRNA quality control: Marking the message for life or death. Curr Biol. 2001 Feb 6; 11(3):R88-91. PMID: 11231165.
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      46. Lykke-Andersen J, Shu MD, Steitz JA. Human Upf proteins target an mRNA for nonsense-mediated decay when bound downstream of a termination codon. Cell. 2000 Dec 22; 103(7):1121-31. PMID: 11163187.
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      47. Runge S, Nielsen FC, Nielsen J, Lykke-Andersen J, Wewer UM, Christiansen J. H19 RNA binds four molecules of insulin-like growth factor II mRNA-binding protein. J Biol Chem. 2000 Sep 22; 275(38):29562-9. PMID: 10875929.
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      48. Nielsen J, Christiansen J, Lykke-Andersen J, Johnsen AH, Wewer UM, Nielsen FC. A family of insulin-like growth factor II mRNA-binding proteins represses translation in late development. Mol Cell Biol. 1999 Feb; 19(2):1262-70. PMID: 9891060.
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      49. Lykke-Andersen J, Christiansen J. The C-terminal carboxy group of T7 RNA polymerase ensures efficient magnesium ion-dependent catalysis. Nucleic Acids Res. 1998 Dec 15; 26(24):5630-5. PMID: 9837993.
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      50. Lykke-Andersen J, Garrett RA. RNA-protein interactions of an archaeal homotetrameric splicing endoribonuclease with an exceptional evolutionary history. EMBO J. 1997 Oct 15; 16(20):6290-300. PMID: 9321408.
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      51. Lykke-Andersen J, Aagaard C, Semionenkov M, Garrett RA. Archaeal introns: splicing, intercellular mobility and evolution. Trends Biochem Sci. 1997 Sep; 22(9):326-31. PMID: 9301331.
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      52. Lykke-Andersen J, Garrett RA, Kjems J. Mapping metal ions at the catalytic centres of two intron-encoded endonucleases. EMBO J. 1997 Jun 2; 16(11):3272-81. PMID: 9214642.
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      53. Lykke-Andersen J, Garrett RA, Kjems J. Protein footprinting approach to mapping DNA binding sites of two archaeal homing enzymes: evidence for a two-domain protein structure. Nucleic Acids Res. 1996 Oct 15; 24(20):3982-9. PMID: 8918801.
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      54. Lykke-Andersen J, Garrett RA. Structural characteristics of the stable RNA introns of archaeal hyperthermophiles and their splicing junctions. J Mol Biol. 1994 Nov 11; 243(5):846-55. PMID: 7966305.
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      55. Lykke-Andersen J, Thi-Ngoc HP, Garrett RA. DNA substrate specificity and cleavage kinetics of an archaeal homing-type endonuclease from Pyrobaculum organotrophum. Nucleic Acids Res. 1994 Nov 11; 22(22):4583-90. PMID: 7984405.
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