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Adam Klie

Title(s)Postdoctoral Scholar, Medicine
SchoolVc-health Sciences-schools
Address9500 Gilman Drive #
La Jolla CA 92093
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. GAME: Genomic API for Model Evaluation. bioRxiv. 2025 Jul 08. Luthra I, Priyadarshi S, Guo R, Mahieu L, Kempynck N, Dooley D, Penzar D, Vorontsov I, Sheng Y, Tu X, Klie A, Drusinsky S, Floren A, Armand E, Alasoo K, Seelig G, Tewhey R, Koo P, Agarwal V, Gosai S, Pinello L, White MA, Lal A, Zeitlinger J, Pollard KS, Libbrecht M, Carter H, Mostafavi S, Kulakovskiy I, Hsiao W, Aerts S, Zhou J, de Boer CG. PMID: 40672207; PMCID: PMC12265512.
      View in: PubMed   Mentions:
    2. VADEr: Vision Transformer-Inspired Framework for Polygenic Risk Reveals Underlying Genetic Heterogeneity in Prostate Cancer. medRxiv. 2025 May 18. Talwar JV, Klie A, Pagadala MS, Pasternak G, Rose B, Seibert TM, Gymrek M, Carter H. PMID: 40463543; PMCID: PMC12132116.
      View in: PubMed   Mentions:
    3. GenVarLoader: An accelerated dataloader for applying deep learning to personalized genomics. bioRxiv. 2025 Jan 17. Laub D, Ho A, Jaureguy J, Klie A, Salem RM, McVicker G, Carter H. PMID: 39868273; PMCID: PMC11761601.
      View in: PubMed   Mentions:
    4. Pre-operative stereotactic radiosurgery and peri-operative dexamethasone for resectable brain metastases: a two-arm pilot study evaluating clinical outcomes and immunological correlates. Nat Commun. 2024 10 14; 15(1):8854. Jansen CS, Pagadala MS, Cardenas MA, Prabhu RS, Goyal S, Zhou C, Chappa P, Vo BT, Ye C, Hopkins B, Zhong J, Klie A, Daniels T, Admassu M, Green I, Pfister NT, Neill SG, Switchenko JM, Prokhnevska N, Hoang KB, Torres MA, Logan S, Olson JJ, Nduom EK, Del Balzo L, Patel K, Burri SH, Asher AL, Wilkinson S, Lake R, Kesarwala AH, Higgins KA, Patel P, Dhere V, Sowalsky AG, Carter H, Khan MK, Kissick H, Buchwald ZS. PMID: 39402027; PMCID: PMC11473782.
      View in: PubMed   Mentions: 5     Fields:    Translation:HumansCellsCTClinical Trials
    5. GRIEVOUS: your command-line general for resolving cross-dataset genotype inconsistencies. Bioinformatics. 2024 08 02; 40(8). Talwar JV, Klie A, Pagadala MS, Carter H. PMID: 39078222; PMCID: PMC11322043.
      View in: PubMed   Mentions: 1     Fields:    Translation:Humans
    6. In vitro evolution and whole genome analysis to study chemotherapy drug resistance in haploid human cells. Sci Rep. 2024 06 18; 14(1):13989. Jado JC, Dow M, Carolino K, Klie A, Fonseca GJ, Ideker T, Carter H, Winzeler EA. PMID: 38886371; PMCID: PMC11183241.
      View in: PubMed   Mentions:    Fields:    Translation:HumansCells
    7. Predictive analyses of regulatory sequences with EUGENe. Nat Comput Sci. 2023 Nov; 3(11):946-956. Klie A, Laub D, Talwar JV, Stites H, Jores T, Solvason JJ, Farley EK, Carter H. PMID: 38177592; PMCID: PMC10768637.
      View in: PubMed   Mentions: 8     Fields:    
    8. Single-nucleotide variants within heart enhancers increase binding affinity and disrupt heart development. Dev Cell. 2023 11 06; 58(21):2206-2216.e5. Jindal GA, Bantle AT, Solvason JJ, Grudzien JL, D'Antonio-Chronowska A, Lim F, Le SH, Song BP, Ragsac MF, Klie A, Larsen RO, Frazer KA, Farley EK. PMID: 37848026; PMCID: PMC10720985.
      View in: PubMed   Mentions: 20     Fields:    Translation:HumansCells
    9. Epigenetic Germline Variants Predict Cancer Prognosis and Risk and Distribute Uniquely in Topologically Associating Domains. bioRxiv. 2023 Jul 07. Goudarzi S, Pagadala M, Klie A, Talwar JV, Carter H. PMID: 37461500; PMCID: PMC10349948.
      View in: PubMed   Mentions:
    10. Increasing metadata coverage of SRA BioSample entries using deep learning-based named entity recognition. Database (Oxford). 2021 04 29; 2021. Klie A, Tsui BY, Mollah S, Skola D, Dow M, Hsu CN, Carter H. PMID: 33914028; PMCID: PMC8083811.
      View in: PubMed   Mentions: 8     Fields:    
    11. Text Processing for Detection of Fungal Ocular Involvement in Critical Care Patients: Cross-Sectional Study. J Med Internet Res. 2020 08 14; 22(8):e18855. Baxter SL, Klie AR, Radha Saseendrakumar B, Ye GY, Hogarth M. PMID: 32795984; PMCID: PMC7455861.
      View in: PubMed   Mentions: 7     Fields:    Translation:Humans
    12. Predicting Mortality in Critical Care Patients with Fungemia Using Structured and Unstructured Data. Annu Int Conf IEEE Eng Med Biol Soc. 2020 07; 2020:5459-5463. Baxter SL, Klie AR, Saseendrakumar BR, Ye GY, Hogarth M, Nemati S. PMID: 33019215; PMCID: PMC7709796.
      View in: PubMed   Mentions: 1     Fields:    Translation:Humans
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